Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033513.t1 | XP_024625682.1 | 64.8 | 557 | 20 | 1 | 1 | 381 | 27 | 583 | 2.10E-188 | 668.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033513.t1 | Q9M219 | 49.5 | 303 | 153 | 0 | 76 | 378 | 250 | 552 | 8.3e-85 | 315.5 |
| MS.gene033513.t1 | Q9M219 | 37.1 | 70 | 40 | 1 | 2 | 71 | 8 | 73 | 3.8e-05 | 50.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033513.t1 | A0A396H3S7 | 64.8 | 557 | 20 | 1 | 1 | 381 | 27 | 583 | 1.5e-188 | 668.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene033513.t1 | TR | mTERF |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033513.t1 | MTR_7g080620 | 94.498 | 309 | 17 | 0 | 71 | 379 | 273 | 581 | 0.0 | 610 |
| MS.gene033513.t1 | MTR_7g080620 | 94.521 | 73 | 4 | 0 | 1 | 73 | 27 | 99 | 3.54e-39 | 149 |
| MS.gene033513.t1 | MTR_8g005155 | 58.033 | 305 | 127 | 1 | 70 | 374 | 253 | 556 | 5.62e-126 | 374 |
| MS.gene033513.t1 | MTR_8g005155 | 48.529 | 68 | 34 | 1 | 5 | 71 | 9 | 76 | 3.17e-12 | 68.2 |
| MS.gene033513.t1 | MTR_7g093000 | 22.951 | 305 | 222 | 7 | 70 | 372 | 268 | 561 | 9.45e-21 | 94.4 |
| MS.gene033513.t1 | MTR_5g084810 | 24.390 | 246 | 173 | 4 | 127 | 370 | 341 | 575 | 2.78e-20 | 92.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033513.t1 | AT3G60400 | 49.505 | 303 | 153 | 0 | 76 | 378 | 250 | 552 | 1.49e-104 | 319 |
| MS.gene033513.t1 | AT4G19650 | 25.279 | 269 | 187 | 4 | 104 | 370 | 328 | 584 | 1.90e-22 | 99.4 |
| MS.gene033513.t1 | AT4G19650 | 25.279 | 269 | 187 | 4 | 104 | 370 | 311 | 567 | 3.20e-22 | 99.0 |
| MS.gene033513.t1 | AT5G06811 | 27.679 | 336 | 210 | 10 | 41 | 369 | 261 | 570 | 1.74e-21 | 96.7 |
| MS.gene033513.t1 | AT5G06810 | 26.838 | 272 | 179 | 7 | 103 | 369 | 318 | 574 | 1.74e-18 | 87.4 |
| MS.gene033513.t1 | AT5G45113 | 25.540 | 278 | 186 | 6 | 98 | 370 | 145 | 406 | 7.90e-17 | 82.0 |
Find 82 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTCTATAATTTCATAATTT+TGG | 0.097711 | 7.4:+22316151 | None:intergenic |
| TGCATTGACTATGAATCTTT+TGG | 0.189736 | 7.4:-22316289 | MS.gene033513:CDS |
| GAGGATGTTATTGAAAATTT+TGG | 0.244503 | 7.4:-22316561 | MS.gene033513:CDS |
| CCAAAGTTGTTCCCATTTCC+TGG | 0.259323 | 7.4:+22316109 | None:intergenic |
| TCTGTGTCTGATGGGGATTT+TGG | 0.281143 | 7.4:+22317466 | None:intergenic |
| TTTGGAGAGGTTTGGGAAGT+TGG | 0.299547 | 7.4:+22317484 | None:intergenic |
| GTAGAGTATTTCTGTGGATT+TGG | 0.306808 | 7.4:-22316711 | MS.gene033513:CDS |
| TGAAGTGTTAAAGCTTGATT+TGG | 0.312206 | 7.4:-22316646 | MS.gene033513:CDS |
| AATTGCTCGAACCAATGTTT+TGG | 0.329948 | 7.4:+22315901 | None:intergenic |
| TGGCATGAGCTCTAAAGATT+TGG | 0.330860 | 7.4:-22316583 | MS.gene033513:CDS |
| CGGCACAAGCAGTGAGTTAC+AGG | 0.339180 | 7.4:-22316256 | MS.gene033513:CDS |
| ATGGTTCTGTGATAAGTTAA+AGG | 0.357332 | 7.4:-22316472 | MS.gene033513:CDS |
| GAGCTATGGGTTTGCAAGAA+TGG | 0.361647 | 7.4:-22316491 | MS.gene033513:CDS |
| ATTCAATTCTTGAGCGTAGA+AGG | 0.364335 | 7.4:+22316220 | None:intergenic |
| AGTTAAAGGGTGGGCATTAT+CGG | 0.373850 | 7.4:-22316458 | MS.gene033513:CDS |
| AAGTGATAATGCAACATTGC+TGG | 0.384343 | 7.4:+22316069 | None:intergenic |
| GGGAACAACTTTGGACTGTC+TGG | 0.390764 | 7.4:-22316100 | MS.gene033513:CDS |
| TTCTTACATAGATTAGGCTT+TGG | 0.390843 | 7.4:-22316318 | MS.gene033513:CDS |
| TTAAATTTCTTACATAGATT+AGG | 0.396832 | 7.4:-22316324 | MS.gene033513:CDS |
| CTGTGGATTTGGTGGAAAGA+AGG | 0.405320 | 7.4:-22316700 | MS.gene033513:CDS |
| ATCTGTACCTAGGTATAATT+CGG | 0.410370 | 7.4:+22316040 | None:intergenic |
| CCCATAGCTCTCATCACATT+TGG | 0.415076 | 7.4:+22316504 | None:intergenic |
| TTTGGTGTTGTGGAGGTAAT+CGG | 0.422094 | 7.4:+22317409 | None:intergenic |
| ATCGGTGATCATACTTTGAA+TGG | 0.423686 | 7.4:+22315972 | None:intergenic |
| CCAGGAAATGGGAACAACTT+TGG | 0.424489 | 7.4:-22316109 | MS.gene033513:CDS |
| AAATCAAGCTTTAACACTTC+AGG | 0.444612 | 7.4:+22316648 | None:intergenic |
| CATGAGCTCTAAAGATTTGG+AGG | 0.452449 | 7.4:-22316580 | MS.gene033513:CDS |
| ATTATTACATTGGCAATTGA+CGG | 0.455169 | 7.4:+22315872 | None:intergenic |
| AAGATTATCAAGATGGTTTG+AGG | 0.456096 | 7.4:-22316389 | MS.gene033513:CDS |
| TGGTGGAAAGAAGGAGGAAG+TGG | 0.471562 | 7.4:-22316691 | MS.gene033513:CDS |
| GAGTATTTCTGTGGATTTGG+TGG | 0.478331 | 7.4:-22316708 | MS.gene033513:CDS |
| CCATACGTGGCTTACTGAAA+GGG | 0.479203 | 7.4:-22316016 | MS.gene033513:CDS |
| CGGGATAAAGATTATCAAGA+TGG | 0.492595 | 7.4:-22316396 | MS.gene033513:CDS |
| ATAGGTGAAGGGTATGGATT+TGG | 0.493429 | 7.4:+22317391 | None:intergenic |
| CCCTTTCAGTAAGCCACGTA+TGG | 0.493524 | 7.4:+22316016 | None:intergenic |
| AATGGATGGAAGGGTAATGT+AGG | 0.497129 | 7.4:-22316798 | MS.gene033513:intron |
| TGGTTCTGTGATAAGTTAAA+GGG | 0.503197 | 7.4:-22316471 | MS.gene033513:CDS |
| CAAGTGATCGCAATGAAGAC+CGG | 0.503592 | 7.4:-22316416 | MS.gene033513:CDS |
| CATCTTGATAATCTTTATCC+CGG | 0.516234 | 7.4:+22316397 | None:intergenic |
| AGCAATGTTGCATTATCACT+TGG | 0.516606 | 7.4:-22316067 | MS.gene033513:CDS |
| TCCATACGTGGCTTACTGAA+AGG | 0.518843 | 7.4:-22316017 | MS.gene033513:CDS |
| AAATACCACAATTATTACAT+TGG | 0.521406 | 7.4:+22315862 | None:intergenic |
| CCAAATGTGATGAGAGCTAT+GGG | 0.525151 | 7.4:-22316504 | MS.gene033513:CDS |
| ACCAAATGTGATGAGAGCTA+TGG | 0.530073 | 7.4:-22316505 | MS.gene033513:CDS |
| ACATGGTTTCTGTGTCTGAT+GGG | 0.535641 | 7.4:+22317458 | None:intergenic |
| TGTGTTGGGAACAATTAGAA+TGG | 0.537589 | 7.4:-22316535 | MS.gene033513:CDS |
| CCTCACAAATCTCATTTCAA+AGG | 0.541683 | 7.4:-22317336 | MS.gene033513:intron |
| AGGGTATGGATTTGGTGTTG+TGG | 0.544585 | 7.4:+22317399 | None:intergenic |
| GTTGCCAATGTGTTCTGCAT+AGG | 0.550077 | 7.4:+22317373 | None:intergenic |
| ATCCAGCTGCTCCAAAACAT+TGG | 0.550499 | 7.4:-22315912 | MS.gene033513:CDS |
| TTGGAGCTGTTGAAACACTT+TGG | 0.555886 | 7.4:-22316603 | MS.gene033513:CDS |
| GACATGGTTTCTGTGTCTGA+TGG | 0.564066 | 7.4:+22317457 | None:intergenic |
| ATTCTCAAAGCTCTGCATGA+TGG | 0.566277 | 7.4:-22316199 | MS.gene033513:CDS |
| GGGTAATGTAGGAGAACTCA+TGG | 0.567143 | 7.4:-22316787 | MS.gene033513:CDS |
| AAAGCTTGATTTGGAGAAGA+CGG | 0.572369 | 7.4:-22316637 | MS.gene033513:CDS |
| CTTTGAAATGAGATTTGTGA+GGG | 0.572972 | 7.4:+22317337 | None:intergenic |
| CATAAAGTAGAGTATTTCTG+TGG | 0.577594 | 7.4:-22316717 | MS.gene033513:CDS |
| TTCTGTGATAAGTTAAAGGG+TGG | 0.581828 | 7.4:-22316468 | MS.gene033513:CDS |
| TGGATTTGGTGGAAAGAAGG+AGG | 0.582914 | 7.4:-22316697 | MS.gene033513:CDS |
| ATTTGTTGATCACAAAGAAG+AGG | 0.582958 | 7.4:-22316748 | MS.gene033513:CDS |
| TTTGAGCTTCGTGAATGACA+TGG | 0.585863 | 7.4:+22317441 | None:intergenic |
| GAAGACGGTGATTAATGTGT+TGG | 0.586071 | 7.4:-22316622 | MS.gene033513:CDS |
| AAGTGATCGCAATGAAGACC+GGG | 0.587085 | 7.4:-22316415 | MS.gene033513:CDS |
| GGTAATGTAGGAGAACTCAT+GGG | 0.593941 | 7.4:-22316786 | MS.gene033513:CDS |
| CATGGTTTCTGTGTCTGATG+GGG | 0.598267 | 7.4:+22317459 | None:intergenic |
| GTTGTGGAGGTAATCGGTGA+GGG | 0.598909 | 7.4:+22317415 | None:intergenic |
| TTCTGCATAGGTGAAGGGTA+TGG | 0.599546 | 7.4:+22317385 | None:intergenic |
| ATGTGTTCTGCATAGGTGAA+GGG | 0.618433 | 7.4:+22317380 | None:intergenic |
| GTATGGATTTGGTGTTGTGG+AGG | 0.635398 | 7.4:+22317402 | None:intergenic |
| CATACGTGGCTTACTGAAAG+GGG | 0.635482 | 7.4:-22316015 | MS.gene033513:CDS |
| TGGGCATTATCGGCTGCTAG+CGG | 0.639965 | 7.4:-22316448 | MS.gene033513:CDS |
| TTCACCTATGCAGAACACAT+TGG | 0.649247 | 7.4:-22317377 | MS.gene033513:CDS |
| TGTTGTGGAGGTAATCGGTG+AGG | 0.650161 | 7.4:+22317414 | None:intergenic |
| AATGTGTTCTGCATAGGTGA+AGG | 0.659720 | 7.4:+22317379 | None:intergenic |
| TGGATGACCGAATTATACCT+AGG | 0.659803 | 7.4:-22316047 | MS.gene033513:CDS |
| CTAGGTACAGATTCCATACG+TGG | 0.660432 | 7.4:-22316029 | MS.gene033513:CDS |
| GTAATGTAGGAGAACTCATG+GGG | 0.661705 | 7.4:-22316785 | MS.gene033513:CDS |
| TCTGTGATAAGTTAAAGGGT+GGG | 0.664345 | 7.4:-22316467 | MS.gene033513:CDS |
| ATGTAGGAGAACTCATGGGG+AGG | 0.683085 | 7.4:-22316782 | MS.gene033513:CDS |
| CACGTATGGAATCTGTACCT+AGG | 0.683828 | 7.4:+22316030 | None:intergenic |
| CCTTTGAAATGAGATTTGTG+AGG | 0.730568 | 7.4:+22317336 | None:intergenic |
| GCGGTGGAGGAAGAAGAACA+TGG | 0.740499 | 7.4:+22317529 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAATTTCTTACATAGATT+AGG | - | chr7.4:22317079-22317098 | MS.gene033513:intron | 15.0% |
| !! | ATAACATTAAAAGAGTCATT+AGG | - | chr7.4:22316117-22316136 | MS.gene033513:CDS | 20.0% |
| !!! | AATTTTCTTGGATAATTCTT+TGG | - | chr7.4:22316511-22316530 | MS.gene033513:CDS | 20.0% |
| !!! | ATTTTCTTGGATAATTCTTT+GGG | - | chr7.4:22316512-22316531 | MS.gene033513:CDS | 20.0% |
| !!! | GCTCTATAATTTCATAATTT+TGG | + | chr7.4:22317255-22317274 | None:intergenic | 20.0% |
| !!! | TGATCTAAAGTTAATTTTCT+TGG | - | chr7.4:22316499-22316518 | MS.gene033513:CDS | 20.0% |
| !!! | TTAATGTTATTTGAGAAAGT+GGG | + | chr7.4:22316107-22316126 | None:intergenic | 20.0% |
| !!! | TTTAATGTTATTTGAGAAAG+TGG | + | chr7.4:22316108-22316127 | None:intergenic | 20.0% |
| ! | AAAGACTTCAAATTCGTTAA+TGG | + | chr7.4:22316150-22316169 | None:intergenic | 25.0% |
| ! | AAGACTTCAAATTCGTTAAT+GGG | + | chr7.4:22316149-22316168 | None:intergenic | 25.0% |
| !! | GAGGATGTTATTGAAAATTT+TGG | - | chr7.4:22316842-22316861 | MS.gene033513:intron | 25.0% |
| !! | TACAAATTTCTTTTCGCTAT+CGG | + | chr7.4:22317452-22317471 | None:intergenic | 25.0% |
| !! | TTTTCTTGGATAATTCTTTG+GGG | - | chr7.4:22316513-22316532 | MS.gene033513:CDS | 25.0% |
| !!! | AAAAGTGAATTTTTTCAACC+AGG | - | chr7.4:22317276-22317295 | MS.gene033513:intron | 25.0% |
| !!! | AAGTCTTTTTTGAAAGCATA+GGG | - | chr7.4:22316162-22316181 | MS.gene033513:CDS | 25.0% |
| !!! | AATTTTTTCAACCAGGAAAT+GGG | - | chr7.4:22317283-22317302 | MS.gene033513:intron | 25.0% |
| !!! | CGATTTTTTTACGATTTGAA+TGG | - | chr7.4:22316587-22316606 | MS.gene033513:CDS | 25.0% |
| !!! | CTTTGTTGGTTTAAAAGATT+TGG | - | chr7.4:22316368-22316387 | MS.gene033513:CDS | 25.0% |
| !!! | TGGTTTAAAAGATTTGGTTT+TGG | - | chr7.4:22316374-22316393 | MS.gene033513:CDS | 25.0% |
| !!! | TTGGTAATGTTGAAGTTATT+GGG | - | chr7.4:22316393-22316412 | MS.gene033513:CDS | 25.0% |
| !!! | TTTGGTAATGTTGAAGTTAT+TGG | - | chr7.4:22316392-22316411 | MS.gene033513:CDS | 25.0% |
| !!! | TTTTTTACGATTTGAATGGA+TGG | - | chr7.4:22316591-22316610 | MS.gene033513:CDS | 25.0% |
| AAGATTATCAAGATGGTTTG+AGG | - | chr7.4:22317014-22317033 | MS.gene033513:intron | 30.0% | |
| AGACTTCAAATTCGTTAATG+GGG | + | chr7.4:22316148-22316167 | None:intergenic | 30.0% | |
| ATCTGTACCTAGGTATAATT+CGG | + | chr7.4:22317366-22317385 | None:intergenic | 30.0% | |
| ATGGAGAAGAGTTCTATATT+TGG | - | chr7.4:22316317-22316336 | MS.gene033513:CDS | 30.0% | |
| CATAGGGATAGATTATACTT+TGG | - | chr7.4:22316178-22316197 | MS.gene033513:CDS | 30.0% | |
| GAAAAGAACAGCTTATCATT+CGG | + | chr7.4:22316218-22316237 | None:intergenic | 30.0% | |
| TGGAGAAGAGTTCTATATTT+GGG | - | chr7.4:22316318-22316337 | MS.gene033513:CDS | 30.0% | |
| TTCTTACATAGATTAGGCTT+TGG | - | chr7.4:22317085-22317104 | MS.gene033513:intron | 30.0% | |
| ! | AAATCAAGCTTTAACACTTC+AGG | + | chr7.4:22316758-22316777 | None:intergenic | 30.0% |
| ! | ATGGTTCTGTGATAAGTTAA+AGG | - | chr7.4:22316931-22316950 | MS.gene033513:intron | 30.0% |
| ! | ATTTGTTGATCACAAAGAAG+AGG | - | chr7.4:22316655-22316674 | MS.gene033513:CDS | 30.0% |
| ! | CATAAAGTAGAGTATTTCTG+TGG | - | chr7.4:22316686-22316705 | MS.gene033513:CDS | 30.0% |
| ! | CATCTTGATAATCTTTATCC+CGG | + | chr7.4:22317009-22317028 | None:intergenic | 30.0% |
| ! | CTGGATGAATTTTAAACACT+CGG | + | chr7.4:22317477-22317496 | None:intergenic | 30.0% |
| ! | TGAAGTGTTAAAGCTTGATT+TGG | - | chr7.4:22316757-22316776 | MS.gene033513:CDS | 30.0% |
| ! | TGAAGTTATTGGGATTTGTT+TGG | - | chr7.4:22316403-22316422 | MS.gene033513:CDS | 30.0% |
| ! | TGGATGAATTTTAAACACTC+GGG | + | chr7.4:22317476-22317495 | None:intergenic | 30.0% |
| ! | TGGTTCTGTGATAAGTTAAA+GGG | - | chr7.4:22316932-22316951 | MS.gene033513:intron | 30.0% |
| !! | CTTTGAAATGAGATTTGTGA+GGG | + | chr7.4:22316069-22316088 | None:intergenic | 30.0% |
| !! | GAAAATTTTGGTCATGTGTT+GGG | - | chr7.4:22316854-22316873 | MS.gene033513:intron | 30.0% |
| !! | TGAAAATTTTGGTCATGTGT+TGG | - | chr7.4:22316853-22316872 | MS.gene033513:intron | 30.0% |
| !!! | AATTTTGGTTCAGAATCCTT+GGG | + | chr7.4:22317240-22317259 | None:intergenic | 30.0% |
| !!! | CAAATTCAAAAGGGTGTTTT+TGG | - | chr7.4:22316458-22316477 | MS.gene033513:CDS | 30.0% |
| !!! | GAAGTCTTTTTTGAAAGCAT+AGG | - | chr7.4:22316161-22316180 | MS.gene033513:CDS | 30.0% |
| !!! | GAATTTTTTCAACCAGGAAA+TGG | - | chr7.4:22317282-22317301 | MS.gene033513:intron | 30.0% |
| !!! | TAATTTTGGTTCAGAATCCT+TGG | + | chr7.4:22317241-22317260 | None:intergenic | 30.0% |
| !!! | TGCATTGACTATGAATCTTT+TGG | - | chr7.4:22317114-22317133 | MS.gene033513:intron | 30.0% |
| !!! | TTTTCCTTTTGTTTTGAGTG+AGG | - | chr7.4:22316427-22316446 | MS.gene033513:CDS | 30.0% |
| AAATGTAGATTCATGGCATG+AGG | - | chr7.4:22316550-22316569 | MS.gene033513:CDS | 35.0% | |
| ACTTCCTCACTCAAAACAAA+AGG | + | chr7.4:22316434-22316453 | None:intergenic | 35.0% | |
| AGCAATGTTGCATTATCACT+TGG | - | chr7.4:22317336-22317355 | MS.gene033513:intron | 35.0% | |
| ATCGGTGATCATACTTTGAA+TGG | + | chr7.4:22317434-22317453 | None:intergenic | 35.0% | |
| ATTCAATTCTTGAGCGTAGA+AGG | + | chr7.4:22317186-22317205 | None:intergenic | 35.0% | |
| CCTCACAAATCTCATTTCAA+AGG | - | chr7.4:22316067-22316086 | MS.gene033513:CDS | 35.0% | |
| CGGGATAAAGATTATCAAGA+TGG | - | chr7.4:22317007-22317026 | MS.gene033513:intron | 35.0% | |
| GAAGTGGGTCAAATTCAAAA+GGG | - | chr7.4:22316449-22316468 | MS.gene033513:CDS | 35.0% | |
| GAAGTTAGGTGTGTTGTATA+TGG | - | chr7.4:22316298-22316317 | MS.gene033513:CDS | 35.0% | |
| GTGTTGAAGAGTTGAAATTG+AGG | - | chr7.4:22316345-22316364 | MS.gene033513:CDS | 35.0% | |
| TACGATTTGAATGGATGGAA+GGG | - | chr7.4:22316596-22316615 | MS.gene033513:CDS | 35.0% | |
| TCTGTGATAAGTTAAAGGGT+GGG | - | chr7.4:22316936-22316955 | MS.gene033513:intron | 35.0% | |
| TGTGTTGGGAACAATTAGAA+TGG | - | chr7.4:22316868-22316887 | MS.gene033513:intron | 35.0% | |
| TTACGATTTGAATGGATGGA+AGG | - | chr7.4:22316595-22316614 | MS.gene033513:CDS | 35.0% | |
| TTCTGTGATAAGTTAAAGGG+TGG | - | chr7.4:22316935-22316954 | MS.gene033513:intron | 35.0% | |
| TTGAGGGAAATGTAGATTCA+TGG | - | chr7.4:22316543-22316562 | MS.gene033513:CDS | 35.0% | |
| ! | AAGTGATAATGCAACATTGC+TGG | + | chr7.4:22317337-22317356 | None:intergenic | 35.0% |
| ! | AATCTTTTGGATCGTTTGCA+CGG | - | chr7.4:22317127-22317146 | MS.gene033513:intron | 35.0% |
| ! | AATTGCTCGAACCAATGTTT+TGG | + | chr7.4:22317505-22317524 | None:intergenic | 35.0% |
| ! | AGTTGAAATTGAGGCTTTGT+TGG | - | chr7.4:22316354-22316373 | MS.gene033513:CDS | 35.0% |
| ! | CTTGTGTGCTTTGTGATTTT+GGG | - | chr7.4:22316264-22316283 | MS.gene033513:CDS | 35.0% |
| ! | GTAGAGTATTTCTGTGGATT+TGG | - | chr7.4:22316692-22316711 | MS.gene033513:CDS | 35.0% |
| ! | TGATAAGCTGTTCTTTTCAG+AGG | - | chr7.4:22316220-22316239 | MS.gene033513:CDS | 35.0% |
| !! | AAAGCTTGATTTGGAGAAGA+CGG | - | chr7.4:22316766-22316785 | MS.gene033513:CDS | 35.0% |
| !! | CCTTTGAAATGAGATTTGTG+AGG | + | chr7.4:22316070-22316089 | None:intergenic | 35.0% |
| !!! | ATTTTGGTTCAGAATCCTTG+GGG | + | chr7.4:22317239-22317258 | None:intergenic | 35.0% |
| !!! | TTGTGATTTTGGGTTTCCTT+GGG | - | chr7.4:22316274-22316293 | MS.gene033513:CDS | 35.0% |
| !!! | TTTGTGATTTTGGGTTTCCT+TGG | - | chr7.4:22316273-22316292 | MS.gene033513:CDS | 35.0% |
| !!! | TTTGTTTTGAGTGAGGAAGT+GGG | - | chr7.4:22316434-22316453 | MS.gene033513:CDS | 35.0% |
| !!! | TTTTGTTTTGAGTGAGGAAG+TGG | - | chr7.4:22316433-22316452 | MS.gene033513:CDS | 35.0% |
| !!! | TTTTTGTGGTGGTGGAAAAA+TGG | + | chr7.4:22315899-22315918 | None:intergenic | 35.0% |
| AATGGATGGAAGGGTAATGT+AGG | - | chr7.4:22316605-22316624 | MS.gene033513:CDS | 40.0% | |
| AATGTGTTCTGCATAGGTGA+AGG | + | chr7.4:22316027-22316046 | None:intergenic | 40.0% | |
| ACATGGTTTCTGTGTCTGAT+GGG | + | chr7.4:22315948-22315967 | None:intergenic | 40.0% | |
| ACCAAATGTGATGAGAGCTA+TGG | - | chr7.4:22316898-22316917 | MS.gene033513:intron | 40.0% | |
| AGTTAAAGGGTGGGCATTAT+CGG | - | chr7.4:22316945-22316964 | MS.gene033513:intron | 40.0% | |
| ATGTGTTCTGCATAGGTGAA+GGG | + | chr7.4:22316026-22316045 | None:intergenic | 40.0% | |
| ATTCTCAAAGCTCTGCATGA+TGG | - | chr7.4:22317204-22317223 | MS.gene033513:intron | 40.0% | |
| CCAAATGTGATGAGAGCTAT+GGG | - | chr7.4:22316899-22316918 | MS.gene033513:intron | 40.0% | |
| GAAGACGGTGATTAATGTGT+TGG | - | chr7.4:22316781-22316800 | MS.gene033513:CDS | 40.0% | |
| GGAAGTGGGTCAAATTCAAA+AGG | - | chr7.4:22316448-22316467 | MS.gene033513:CDS | 40.0% | |
| GGTAATGTAGGAGAACTCAT+GGG | - | chr7.4:22316617-22316636 | MS.gene033513:CDS | 40.0% | |
| GTAATGTAGGAGAACTCATG+GGG | - | chr7.4:22316618-22316637 | MS.gene033513:CDS | 40.0% | |
| TGATGGTAAGAAAAACCCCA+AGG | - | chr7.4:22317221-22317240 | MS.gene033513:intron | 40.0% | |
| TGGATGACCGAATTATACCT+AGG | - | chr7.4:22317356-22317375 | MS.gene033513:CDS | 40.0% | |
| TTCACCTATGCAGAACACAT+TGG | - | chr7.4:22316026-22316045 | MS.gene033513:CDS | 40.0% | |
| TTGGAGCTGTTGAAACACTT+TGG | - | chr7.4:22316800-22316819 | MS.gene033513:intron | 40.0% | |
| TTTGAGCTTCGTGAATGACA+TGG | + | chr7.4:22315965-22315984 | None:intergenic | 40.0% | |
| ! | AGCTGTTCTTTTCAGAGGAT+AGG | - | chr7.4:22316225-22316244 | MS.gene033513:CDS | 40.0% |
| ! | ATAGGTGAAGGGTATGGATT+TGG | + | chr7.4:22316015-22316034 | None:intergenic | 40.0% |
| ! | GAGTATTTCTGTGGATTTGG+TGG | - | chr7.4:22316695-22316714 | MS.gene033513:CDS | 40.0% |
| ! | GCTTGTGTGCTTTGTGATTT+TGG | - | chr7.4:22316263-22316282 | MS.gene033513:CDS | 40.0% |
| ! | TCTTTGGGGAGTTATGTTGA+GGG | - | chr7.4:22316527-22316546 | MS.gene033513:CDS | 40.0% |
| ! | TTCTTTGGGGAGTTATGTTG+AGG | - | chr7.4:22316526-22316545 | MS.gene033513:CDS | 40.0% |
| !! | CATGAGCTCTAAAGATTTGG+AGG | - | chr7.4:22316823-22316842 | MS.gene033513:intron | 40.0% |
| !! | TGGCATGAGCTCTAAAGATT+TGG | - | chr7.4:22316820-22316839 | MS.gene033513:intron | 40.0% |
| !! | TTTGGTGTTGTGGAGGTAAT+CGG | + | chr7.4:22315997-22316016 | None:intergenic | 40.0% |
| !!! | GTTTGGGAAGTTGGTTTTTG+TGG | + | chr7.4:22315913-22315932 | None:intergenic | 40.0% |
| AACACACCTAACTTCTCCCA+AGG | + | chr7.4:22316293-22316312 | None:intergenic | 45.0% | |
| AAGTGATCGCAATGAAGACC+GGG | - | chr7.4:22316988-22317007 | MS.gene033513:intron | 45.0% | |
| ATCCAGCTGCTCCAAAACAT+TGG | - | chr7.4:22317491-22317510 | MS.gene033513:CDS | 45.0% | |
| CAAGTGATCGCAATGAAGAC+CGG | - | chr7.4:22316987-22317006 | MS.gene033513:intron | 45.0% | |
| CACGTATGGAATCTGTACCT+AGG | + | chr7.4:22317376-22317395 | None:intergenic | 45.0% | |
| CATACGTGGCTTACTGAAAG+GGG | - | chr7.4:22317388-22317407 | MS.gene033513:CDS | 45.0% | |
| CATGGTTTCTGTGTCTGATG+GGG | + | chr7.4:22315947-22315966 | None:intergenic | 45.0% | |
| CCAAAGTTGTTCCCATTTCC+TGG | + | chr7.4:22317297-22317316 | None:intergenic | 45.0% | |
| CCAGGAAATGGGAACAACTT+TGG | - | chr7.4:22317294-22317313 | MS.gene033513:intron | 45.0% | |
| CCATACGTGGCTTACTGAAA+GGG | - | chr7.4:22317387-22317406 | MS.gene033513:CDS | 45.0% | |
| CCCATAGCTCTCATCACATT+TGG | + | chr7.4:22316902-22316921 | None:intergenic | 45.0% | |
| CTAGGTACAGATTCCATACG+TGG | - | chr7.4:22317374-22317393 | MS.gene033513:CDS | 45.0% | |
| GACATGGTTTCTGTGTCTGA+TGG | + | chr7.4:22315949-22315968 | None:intergenic | 45.0% | |
| GAGCTATGGGTTTGCAAGAA+TGG | - | chr7.4:22316912-22316931 | MS.gene033513:intron | 45.0% | |
| GGGTAATGTAGGAGAACTCA+TGG | - | chr7.4:22316616-22316635 | MS.gene033513:CDS | 45.0% | |
| GTTGCCAATGTGTTCTGCAT+AGG | + | chr7.4:22316033-22316052 | None:intergenic | 45.0% | |
| TCCATACGTGGCTTACTGAA+AGG | - | chr7.4:22317386-22317405 | MS.gene033513:CDS | 45.0% | |
| TTCTGCATAGGTGAAGGGTA+TGG | + | chr7.4:22316021-22316040 | None:intergenic | 45.0% | |
| TTTGGAGAGGTTTGGGAAGT+TGG | + | chr7.4:22315922-22315941 | None:intergenic | 45.0% | |
| ! | TCTGTGTCTGATGGGGATTT+TGG | + | chr7.4:22315940-22315959 | None:intergenic | 45.0% |
| !! | AGGGTATGGATTTGGTGTTG+TGG | + | chr7.4:22316007-22316026 | None:intergenic | 45.0% |
| !! | ATGGGGATTTTGGAGAGGTT+TGG | + | chr7.4:22315930-22315949 | None:intergenic | 45.0% |
| !! | CTGTGGATTTGGTGGAAAGA+AGG | - | chr7.4:22316703-22316722 | MS.gene033513:CDS | 45.0% |
| !! | GTATGGATTTGGTGTTGTGG+AGG | + | chr7.4:22316004-22316023 | None:intergenic | 45.0% |
| !! | TGGATTTGGTGGAAAGAAGG+AGG | - | chr7.4:22316706-22316725 | MS.gene033513:CDS | 45.0% |
| !! | TGGGGATTTTGGAGAGGTTT+GGG | + | chr7.4:22315929-22315948 | None:intergenic | 45.0% |
| !! | TTGTGGTGGTGGAAAAATGG+CGG | + | chr7.4:22315896-22315915 | None:intergenic | 45.0% |
| !!! | AACCAATGTTTTGGAGCAGC+TGG | + | chr7.4:22317496-22317515 | None:intergenic | 45.0% |
| !!! | GAAGTTGGTTTTTGTGGTGG+TGG | + | chr7.4:22315907-22315926 | None:intergenic | 45.0% |
| !!! | TGGGAAGTTGGTTTTTGTGG+TGG | + | chr7.4:22315910-22315929 | None:intergenic | 45.0% |
| ATGTAGGAGAACTCATGGGG+AGG | - | chr7.4:22316621-22316640 | MS.gene033513:CDS | 50.0% | |
| CCCTTTCAGTAAGCCACGTA+TGG | + | chr7.4:22317390-22317409 | None:intergenic | 50.0% | |
| GGGAACAACTTTGGACTGTC+TGG | - | chr7.4:22317303-22317322 | MS.gene033513:intron | 50.0% | |
| GGGTTTCCTTGGGAGAAGTT+AGG | - | chr7.4:22316284-22316303 | MS.gene033513:CDS | 50.0% | |
| GTTGTGGAGGTAATCGGTGA+GGG | + | chr7.4:22315991-22316010 | None:intergenic | 50.0% | |
| TGGTGGAAAGAAGGAGGAAG+TGG | - | chr7.4:22316712-22316731 | MS.gene033513:CDS | 50.0% | |
| TGTTGTGGAGGTAATCGGTG+AGG | + | chr7.4:22315992-22316011 | None:intergenic | 50.0% | |
| !! | GTCTGATGGGGATTTTGGAG+AGG | + | chr7.4:22315935-22315954 | None:intergenic | 50.0% |
| CGGCACAAGCAGTGAGTTAC+AGG | - | chr7.4:22317147-22317166 | MS.gene033513:intron | 55.0% | |
| TGGTGGAAAAATGGCGGTGG+AGG | + | chr7.4:22315890-22315909 | None:intergenic | 55.0% | |
| ! | TGGGCATTATCGGCTGCTAG+CGG | - | chr7.4:22316955-22316974 | MS.gene033513:intron | 55.0% |
| !! | TGGTGGTGGAAAAATGGCGG+TGG | + | chr7.4:22315893-22315912 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 22315876 | 22317549 | 22315876 | ID=MS.gene033513 |
| chr7.4 | mRNA | 22315876 | 22317549 | 22315876 | ID=MS.gene033513.t1;Parent=MS.gene033513 |
| chr7.4 | exon | 22317337 | 22317549 | 22317337 | ID=MS.gene033513.t1.exon1;Parent=MS.gene033513.t1 |
| chr7.4 | CDS | 22317337 | 22317549 | 22317337 | ID=cds.MS.gene033513.t1;Parent=MS.gene033513.t1 |
| chr7.4 | exon | 22315876 | 22316808 | 22315876 | ID=MS.gene033513.t1.exon2;Parent=MS.gene033513.t1 |
| chr7.4 | CDS | 22315876 | 22316808 | 22315876 | ID=cds.MS.gene033513.t1;Parent=MS.gene033513.t1 |
| Gene Sequence |
| Protein sequence |
