Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033528.t1 | XP_003624235.1 | 94 | 336 | 17 | 3 | 1 | 334 | 1 | 335 | 3.30E-161 | 577.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033528.t1 | Q9T072 | 39.0 | 223 | 115 | 6 | 118 | 326 | 109 | 324 | 3.4e-26 | 120.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033528.t1 | G7KSG4 | 94.0 | 336 | 17 | 3 | 1 | 334 | 1 | 335 | 2.4e-161 | 577.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene033528.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033528.t1 | MTR_7g080780 | 94.048 | 336 | 17 | 3 | 1 | 334 | 1 | 335 | 0.0 | 599 |
| MS.gene033528.t1 | MTR_7g080780 | 93.808 | 323 | 17 | 3 | 14 | 334 | 1 | 322 | 0.0 | 573 |
| MS.gene033528.t1 | MTR_8g009020 | 45.528 | 246 | 104 | 5 | 115 | 332 | 84 | 327 | 6.95e-57 | 187 |
| MS.gene033528.t1 | MTR_4g009540 | 36.986 | 365 | 159 | 11 | 1 | 328 | 1 | 331 | 4.52e-52 | 175 |
| MS.gene033528.t1 | MTR_2g104490 | 36.182 | 351 | 154 | 9 | 1 | 326 | 1 | 306 | 6.62e-52 | 174 |
| MS.gene033528.t1 | MTR_2g104550 | 36.901 | 355 | 152 | 10 | 1 | 327 | 1 | 311 | 4.15e-51 | 172 |
| MS.gene033528.t1 | MTR_4g009110 | 35.121 | 373 | 174 | 11 | 1 | 328 | 1 | 350 | 3.38e-49 | 168 |
| MS.gene033528.t1 | MTR_8g009010 | 44.000 | 225 | 79 | 7 | 116 | 323 | 73 | 267 | 1.45e-48 | 166 |
| MS.gene033528.t1 | MTR_2g104490 | 36.145 | 332 | 142 | 9 | 1 | 307 | 1 | 287 | 1.09e-47 | 162 |
| MS.gene033528.t1 | MTR_4g009540 | 36.919 | 344 | 146 | 11 | 1 | 307 | 1 | 310 | 8.82e-47 | 160 |
| MS.gene033528.t1 | MTR_5g014600 | 35.461 | 282 | 133 | 5 | 95 | 327 | 53 | 334 | 9.54e-43 | 150 |
| MS.gene033528.t1 | MTR_5g014520 | 42.408 | 191 | 101 | 1 | 148 | 329 | 141 | 331 | 6.48e-41 | 146 |
| MS.gene033528.t1 | MTR_0250s0040 | 39.806 | 206 | 108 | 4 | 132 | 328 | 63 | 261 | 1.11e-40 | 143 |
| MS.gene033528.t1 | MTR_4g097940 | 45.251 | 179 | 91 | 2 | 155 | 326 | 146 | 324 | 2.65e-40 | 144 |
| MS.gene033528.t1 | MTR_4g092700 | 40.164 | 244 | 123 | 6 | 101 | 323 | 85 | 326 | 6.06e-40 | 143 |
| MS.gene033528.t1 | MTR_2g104560 | 43.548 | 186 | 97 | 3 | 153 | 331 | 44 | 228 | 4.26e-39 | 138 |
| MS.gene033528.t1 | MTR_5g014640 | 41.243 | 177 | 98 | 1 | 157 | 327 | 147 | 323 | 1.99e-38 | 139 |
| MS.gene033528.t1 | MTR_4g097920 | 43.575 | 179 | 94 | 2 | 155 | 326 | 131 | 309 | 4.21e-38 | 138 |
| MS.gene033528.t1 | MTR_4g097920 | 43.575 | 179 | 94 | 2 | 155 | 326 | 146 | 324 | 6.06e-38 | 138 |
| MS.gene033528.t1 | MTR_6g047570 | 43.529 | 170 | 87 | 2 | 163 | 323 | 158 | 327 | 1.34e-36 | 134 |
| MS.gene033528.t1 | MTR_0246s0020 | 38.579 | 197 | 106 | 2 | 152 | 334 | 186 | 381 | 2.63e-36 | 135 |
| MS.gene033528.t1 | MTR_0011s0210 | 41.111 | 180 | 97 | 1 | 163 | 333 | 182 | 361 | 3.67e-36 | 134 |
| MS.gene033528.t1 | MTR_0011s0260 | 41.520 | 171 | 91 | 1 | 163 | 324 | 182 | 352 | 8.01e-36 | 133 |
| MS.gene033528.t1 | MTR_2g104500 | 37.054 | 224 | 128 | 5 | 110 | 328 | 57 | 272 | 3.77e-35 | 129 |
| MS.gene033528.t1 | MTR_4g067010 | 36.792 | 212 | 110 | 4 | 127 | 328 | 120 | 317 | 8.86e-35 | 129 |
| MS.gene033528.t1 | MTR_4g066460 | 37.379 | 206 | 120 | 3 | 132 | 328 | 120 | 325 | 5.17e-34 | 127 |
| MS.gene033528.t1 | MTR_8g069740 | 33.333 | 297 | 146 | 8 | 23 | 306 | 8 | 265 | 7.49e-34 | 125 |
| MS.gene033528.t1 | MTR_2g104650 | 44.565 | 184 | 88 | 3 | 152 | 323 | 83 | 264 | 7.61e-33 | 123 |
| MS.gene033528.t1 | MTR_5g014560 | 38.636 | 176 | 99 | 1 | 163 | 329 | 130 | 305 | 1.11e-32 | 123 |
| MS.gene033528.t1 | MTR_0246s0020 | 38.798 | 183 | 95 | 3 | 152 | 318 | 186 | 367 | 1.91e-32 | 124 |
| MS.gene033528.t1 | MTR_2g010450 | 41.860 | 172 | 90 | 2 | 162 | 323 | 175 | 346 | 3.54e-32 | 123 |
| MS.gene033528.t1 | MTR_2g104530 | 38.674 | 181 | 106 | 1 | 154 | 329 | 95 | 275 | 6.13e-31 | 118 |
| MS.gene033528.t1 | MTR_4g066380 | 35.071 | 211 | 125 | 4 | 132 | 330 | 118 | 328 | 1.04e-30 | 119 |
| MS.gene033528.t1 | MTR_0246s0050 | 30.196 | 255 | 160 | 5 | 82 | 323 | 63 | 312 | 6.40e-30 | 116 |
| MS.gene033528.t1 | MTR_4g098035 | 30.000 | 260 | 164 | 5 | 82 | 328 | 84 | 338 | 7.53e-30 | 117 |
| MS.gene033528.t1 | MTR_4g097950 | 35.950 | 242 | 123 | 7 | 117 | 328 | 11 | 250 | 1.16e-29 | 114 |
| MS.gene033528.t1 | MTR_2g104590 | 37.500 | 184 | 81 | 4 | 152 | 323 | 58 | 219 | 8.42e-27 | 106 |
| MS.gene033528.t1 | MTR_4g009420 | 38.000 | 150 | 83 | 3 | 174 | 323 | 53 | 192 | 1.29e-22 | 94.0 |
| MS.gene033528.t1 | MTR_7g451650 | 37.143 | 140 | 81 | 2 | 187 | 323 | 57 | 192 | 3.47e-22 | 92.8 |
| MS.gene033528.t1 | MTR_4g009510 | 37.748 | 151 | 91 | 3 | 174 | 323 | 52 | 200 | 2.98e-20 | 87.8 |
| MS.gene033528.t1 | MTR_7g050350 | 35.821 | 134 | 79 | 2 | 193 | 323 | 1 | 130 | 9.68e-20 | 84.3 |
| MS.gene033528.t1 | MTR_7g451650 | 35.821 | 134 | 79 | 2 | 193 | 323 | 1 | 130 | 9.68e-20 | 84.3 |
| MS.gene033528.t1 | MTR_4g009420 | 38.060 | 134 | 73 | 3 | 174 | 307 | 53 | 176 | 3.60e-18 | 82.0 |
| MS.gene033528.t1 | MTR_7g451650 | 37.097 | 124 | 71 | 2 | 187 | 307 | 57 | 176 | 7.57e-18 | 80.9 |
| MS.gene033528.t1 | MTR_6g047550 | 48.101 | 79 | 40 | 1 | 146 | 224 | 156 | 233 | 3.79e-16 | 77.8 |
| MS.gene033528.t1 | MTR_5g014550 | 35.246 | 122 | 70 | 2 | 194 | 306 | 54 | 175 | 4.99e-14 | 70.1 |
| MS.gene033528.t1 | MTR_8g024790 | 25.500 | 200 | 127 | 6 | 134 | 313 | 256 | 453 | 3.31e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033528.t1 | AT4G37850 | 39.013 | 223 | 115 | 6 | 118 | 326 | 109 | 324 | 3.12e-36 | 133 |
| MS.gene033528.t1 | AT4G37850 | 39.013 | 223 | 115 | 6 | 118 | 326 | 109 | 324 | 3.12e-36 | 133 |
| MS.gene033528.t1 | AT2G22770 | 40.609 | 197 | 93 | 2 | 156 | 328 | 124 | 320 | 8.64e-36 | 132 |
| MS.gene033528.t1 | AT2G22750 | 38.636 | 264 | 117 | 7 | 73 | 322 | 65 | 297 | 1.32e-32 | 123 |
| MS.gene033528.t1 | AT2G22750 | 38.636 | 264 | 117 | 7 | 73 | 322 | 89 | 321 | 2.34e-32 | 123 |
| MS.gene033528.t1 | AT2G22750 | 38.636 | 264 | 117 | 7 | 73 | 322 | 93 | 325 | 2.53e-32 | 123 |
| MS.gene033528.t1 | AT2G22760 | 40.556 | 180 | 94 | 3 | 157 | 323 | 112 | 291 | 3.04e-32 | 122 |
| MS.gene033528.t1 | AT2G22750 | 39.015 | 264 | 115 | 8 | 73 | 322 | 65 | 296 | 8.42e-32 | 121 |
| MS.gene033528.t1 | AT2G22750 | 39.015 | 264 | 115 | 8 | 73 | 322 | 93 | 324 | 1.24e-31 | 121 |
| MS.gene033528.t1 | AT2G22760 | 38.650 | 163 | 88 | 2 | 157 | 307 | 112 | 274 | 6.40e-27 | 107 |
| MS.gene033528.t1 | AT4G09820 | 31.452 | 124 | 74 | 2 | 165 | 288 | 364 | 476 | 2.20e-14 | 74.3 |
| MS.gene033528.t1 | AT5G57150 | 28.485 | 165 | 99 | 5 | 165 | 311 | 55 | 218 | 2.20e-12 | 66.6 |
| MS.gene033528.t1 | AT5G57150 | 28.758 | 153 | 91 | 4 | 165 | 299 | 55 | 207 | 2.55e-12 | 65.9 |
| MS.gene033528.t1 | AT5G57150 | 28.758 | 153 | 91 | 4 | 165 | 299 | 56 | 208 | 2.72e-12 | 65.9 |
| MS.gene033528.t1 | AT5G57150 | 28.758 | 153 | 91 | 4 | 165 | 299 | 56 | 208 | 2.90e-12 | 65.9 |
| MS.gene033528.t1 | AT5G46760 | 22.881 | 236 | 154 | 4 | 75 | 291 | 329 | 555 | 8.27e-12 | 66.6 |
| MS.gene033528.t1 | AT5G57150 | 27.215 | 158 | 87 | 4 | 165 | 299 | 56 | 208 | 1.20e-11 | 64.7 |
| MS.gene033528.t1 | AT4G29930 | 25.490 | 153 | 112 | 2 | 165 | 316 | 55 | 206 | 2.94e-11 | 62.8 |
Find 48 sgRNAs with CRISPR-Local
Find 111 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAGAATTTGATTTCTTATA+TGG | 0.194480 | 7.3:-26627330 | MS.gene033528:intron |
| GCCACATACCTTCTATCTTT+TGG | 0.267929 | 7.3:-26626901 | MS.gene033528:CDS |
| CTCCAACTCAATCAAGTCTT+TGG | 0.295695 | 7.3:-26626947 | MS.gene033528:CDS |
| TCAAAAGCGCATTAAAGAAT+TGG | 0.305540 | 7.3:-26625880 | MS.gene033528:CDS |
| GATTTCCACTTGAATATTGC+TGG | 0.322703 | 7.3:+26625828 | None:intergenic |
| CATGATACCTGGCTTGAAAA+AGG | 0.331924 | 7.3:-26626695 | MS.gene033528:intron |
| GAAGAGGGTTCACATGATTC+TGG | 0.333045 | 7.3:+26627129 | None:intergenic |
| GACAGTACAAGATCACTTAA+TGG | 0.377290 | 7.3:-26626770 | MS.gene033528:CDS |
| TGTGACATTGGTTCAATGAT+TGG | 0.382838 | 7.3:+26626862 | None:intergenic |
| AGTTGTTGTACTATTGCCTT+GGG | 0.387217 | 7.3:+26627086 | None:intergenic |
| CACATGATTCTGGTTCTTCA+AGG | 0.387684 | 7.3:+26627139 | None:intergenic |
| AAATCTGAGAAAATATCTAT+TGG | 0.423346 | 7.3:-26624741 | MS.gene033528:CDS |
| TGTAATCAACATTTGTGCTC+AGG | 0.432810 | 7.3:-26625610 | MS.gene033528:intron |
| TAGTTGTTGTACTATTGCCT+TGG | 0.441021 | 7.3:+26627085 | None:intergenic |
| TTGAGTTACCAAAAGATAGA+AGG | 0.445013 | 7.3:+26626893 | None:intergenic |
| AAGCAACAAAGAAGGTTAGA+AGG | 0.446951 | 7.3:-26626801 | MS.gene033528:CDS |
| TGGCTGAGAGGAAGAGGAGA+AGG | 0.451096 | 7.3:-26626750 | MS.gene033528:CDS |
| GCACTTTCAGCCATGATACC+TGG | 0.455730 | 7.3:-26626706 | MS.gene033528:CDS |
| TTCCAAAGACTTGATTGAGT+TGG | 0.458779 | 7.3:+26626945 | None:intergenic |
| AAAGGACAAAATACTATTTG+TGG | 0.476362 | 7.3:+26627032 | None:intergenic |
| TGCAACAATGGAGGATTCAC+TGG | 0.488783 | 7.3:-26627351 | None:intergenic |
| AAGGACAAAATACTATTTGT+GGG | 0.492056 | 7.3:+26627033 | None:intergenic |
| GGCTGAGAGGAAGAGGAGAA+GGG | 0.495214 | 7.3:-26626749 | MS.gene033528:CDS |
| TGAAGCTAGAGTCAAAGAAA+AGG | 0.495694 | 7.3:-26625757 | MS.gene033528:CDS |
| ACTTAATGGCTGAGAGGAAG+AGG | 0.503095 | 7.3:-26626756 | MS.gene033528:CDS |
| ACAACTATAATAAATGTTGA+AGG | 0.516555 | 7.3:-26627069 | MS.gene033528:CDS |
| TCTGAGAAAATATCTATTGG+AGG | 0.519320 | 7.3:-26624738 | MS.gene033528:CDS |
| CTTTGTTCCAATAAAACCCA+AGG | 0.520956 | 7.3:-26627102 | MS.gene033528:CDS |
| AATCTCAAGCAGTGATTCTG+AGG | 0.530393 | 7.3:+26625779 | None:intergenic |
| AATTCATTGTGAGAAGCAAA+AGG | 0.532564 | 7.3:-26625721 | MS.gene033528:CDS |
| AAAGATAGAAGGTATGTGGC+TGG | 0.543699 | 7.3:+26626904 | None:intergenic |
| ATTGGAACAAAGATAAGAAG+AGG | 0.546112 | 7.3:+26627113 | None:intergenic |
| AGTGAAGGAAGCAACAAAGA+AGG | 0.546734 | 7.3:-26626809 | MS.gene033528:CDS |
| TGAAGAAGACAGCATGGCCA+TGG | 0.560524 | 7.3:-26624777 | MS.gene033528:CDS |
| GACAGATGAAGCAAGAGTGA+AGG | 0.560915 | 7.3:-26626824 | MS.gene033528:CDS |
| TGTCACATAAAACTAAAAGA+AGG | 0.567489 | 7.3:-26626846 | MS.gene033528:CDS |
| AGTAGTAGCATGTTACCATT+CGG | 0.568567 | 7.3:-26625645 | MS.gene033528:CDS |
| ACCAAAAGATAGAAGGTATG+TGG | 0.570819 | 7.3:+26626900 | None:intergenic |
| TTGCTCATCAAATGTGGTGG+TGG | 0.571745 | 7.3:+26627182 | None:intergenic |
| CAAATCCAGCAATATTCAAG+TGG | 0.578490 | 7.3:-26625833 | MS.gene033528:CDS |
| AAATAAACTTGTCTCATCAA+AGG | 0.579876 | 7.3:+26627014 | None:intergenic |
| TTGGAACAAAGATAAGAAGA+GGG | 0.598491 | 7.3:+26627114 | None:intergenic |
| CATGGCCATGGATGACCTTG+TGG | 0.614537 | 7.3:-26624765 | MS.gene033528:CDS |
| CTCTTGCTCATCAAATGTGG+TGG | 0.624271 | 7.3:+26627179 | None:intergenic |
| AAACTCTTGCTCATCAAATG+TGG | 0.646764 | 7.3:+26627176 | None:intergenic |
| GATGGATGAAGAAGACAGCA+TGG | 0.648869 | 7.3:-26624783 | MS.gene033528:CDS |
| ACAAGAATAGAAGCACCGAA+TGG | 0.665943 | 7.3:+26625630 | None:intergenic |
| AAGATCACTTAATGGCTGAG+AGG | 0.675984 | 7.3:-26626762 | MS.gene033528:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTATATTTAAAAAAATT+AGG | - | chr7.3:26625535-26625554 | MS.gene033528:intron | 0.0% |
| !!! | AAGAAAAAAAAGTTTTATAA+TGG | + | chr7.3:26626507-26626526 | None:intergenic | 10.0% |
| !!! | ATAATTAATTATTTTATGCA+AGG | + | chr7.3:26626604-26626623 | None:intergenic | 10.0% |
| !!! | TAAATATACTTTTTTAAAAG+TGG | + | chr7.3:26627112-26627131 | None:intergenic | 10.0% |
| !!! | TAATTAATTATTTTATGCAA+GGG | + | chr7.3:26626603-26626622 | None:intergenic | 10.0% |
| !!! | TTATATCATTATTTGTTAAT+TGG | - | chr7.3:26624798-26624817 | MS.gene033528:intron | 10.0% |
| !! | AAAAAAATCAAAAAGAGTAA+AGG | - | chr7.3:26627172-26627191 | MS.gene033528:CDS | 15.0% |
| !! | AATTATTCTTATCAATTATC+TGG | + | chr7.3:26626910-26626929 | None:intergenic | 15.0% |
| !! | ATTATTCTTATCAATTATCT+GGG | + | chr7.3:26626909-26626928 | None:intergenic | 15.0% |
| !! | GAAATGATTAATATCTTATT+GGG | + | chr7.3:26626676-26626695 | None:intergenic | 15.0% |
| !! | TATATAAATTTGTACGATAA+TGG | + | chr7.3:26625477-26625496 | None:intergenic | 15.0% |
| !! | TGAAATGATTAATATCTTAT+TGG | + | chr7.3:26626677-26626696 | None:intergenic | 15.0% |
| !!! | ATAAATCAATCATTTTAGAA+CGG | - | chr7.3:26626979-26626998 | MS.gene033528:CDS | 15.0% |
| !!! | ATTGAAAGTATTTTTCATTT+TGG | + | chr7.3:26626775-26626794 | None:intergenic | 15.0% |
| !!! | TTGAAAGTATTTTTCATTTT+GGG | + | chr7.3:26626774-26626793 | None:intergenic | 15.0% |
| !!! | TTTTAACAAATCTTTGTTAT+TGG | - | chr7.3:26627085-26627104 | MS.gene033528:CDS | 15.0% |
| !!! | TTTTTTTTATCTTTGATCAT+AGG | - | chr7.3:26624827-26624846 | MS.gene033528:intron | 15.0% |
| !! | AAATCTGAGAAAATATCTAT+TGG | - | chr7.3:26627321-26627340 | MS.gene033528:intron | 20.0% |
| !! | AATTACAATATAAAGTCAGA+TGG | + | chr7.3:26626096-26626115 | None:intergenic | 20.0% |
| !! | ACAACTATAATAAATGTTGA+AGG | - | chr7.3:26624993-26625012 | MS.gene033528:intron | 20.0% |
| !! | ATTAATATCTTATTGGGTTA+AGG | + | chr7.3:26626670-26626689 | None:intergenic | 20.0% |
| !! | ATTACAATATAAAGTCAGAT+GGG | + | chr7.3:26626095-26626114 | None:intergenic | 20.0% |
| !! | ATTTCTCTAATTACTATAGA+TGG | - | chr7.3:26626113-26626132 | MS.gene033528:intron | 20.0% |
| !! | CTCGTATAATTGAATATTAA+AGG | - | chr7.3:26626062-26626081 | MS.gene033528:intron | 20.0% |
| !! | GTTTAATGCTGTATTATTAT+CGG | - | chr7.3:26625985-26626004 | MS.gene033528:intron | 20.0% |
| !!! | ACATTTTTATTTGTGTGAAA+TGG | - | chr7.3:26626952-26626971 | MS.gene033528:CDS | 20.0% |
| !!! | ACTTTTTAAGATGAATAAGT+AGG | - | chr7.3:26626555-26626574 | MS.gene033528:intron | 20.0% |
| !!! | CTTTTTAAGATGAATAAGTA+GGG | - | chr7.3:26626556-26626575 | MS.gene033528:intron | 20.0% |
| ! | AAAGGACAAAATACTATTTG+TGG | + | chr7.3:26625033-26625052 | None:intergenic | 25.0% |
| ! | AAATAAACTTGTCTCATCAA+AGG | + | chr7.3:26625051-26625070 | None:intergenic | 25.0% |
| ! | AAATTATCTTGAGCTTAAAC+TGG | - | chr7.3:26625734-26625753 | MS.gene033528:CDS | 25.0% |
| ! | AAGGACAAAATACTATTTGT+GGG | + | chr7.3:26625032-26625051 | None:intergenic | 25.0% |
| ! | AATTATCTTGAGCTTAAACT+GGG | - | chr7.3:26625735-26625754 | MS.gene033528:CDS | 25.0% |
| ! | TATATTGATAAACCTCATTG+TGG | - | chr7.3:26627011-26627030 | MS.gene033528:CDS | 25.0% |
| ! | TGTCACATAAAACTAAAAGA+AGG | - | chr7.3:26625216-26625235 | MS.gene033528:intron | 25.0% |
| ! | TTATCTTTGATCATAGGAAA+TGG | - | chr7.3:26624833-26624852 | MS.gene033528:intron | 25.0% |
| !! | AACATTTACATAACCCATTT+TGG | + | chr7.3:26627052-26627071 | None:intergenic | 25.0% |
| !! | GATCTCTAATTTGTAATGTT+GGG | - | chr7.3:26627219-26627238 | MS.gene033528:intron | 25.0% |
| !! | GGAGAATTTGATTTCTTATA+TGG | - | chr7.3:26624732-26624751 | MS.gene033528:CDS | 25.0% |
| !! | TAAAAGTCAATGAAAAGCAT+AGG | + | chr7.3:26625933-26625952 | None:intergenic | 25.0% |
| !! | TGATCTCTAATTTGTAATGT+TGG | - | chr7.3:26627218-26627237 | MS.gene033528:intron | 25.0% |
| !!! | AAAATGGGTTATGTAAATGT+TGG | - | chr7.3:26627051-26627070 | MS.gene033528:CDS | 25.0% |
| !!! | CTTTTAGTTTTATGTGACAT+TGG | + | chr7.3:26625215-26625234 | None:intergenic | 25.0% |
| !!! | GACAACTTTTTTCTTCAAAT+AGG | + | chr7.3:26626752-26626771 | None:intergenic | 25.0% |
| AATTCATTGTGAGAAGCAAA+AGG | - | chr7.3:26626341-26626360 | MS.gene033528:intron | 30.0% | |
| ATTATCTTGAGCTTAAACTG+GGG | - | chr7.3:26625736-26625755 | MS.gene033528:CDS | 30.0% | |
| ATTGGAACAAAGATAAGAAG+AGG | + | chr7.3:26624952-26624971 | None:intergenic | 30.0% | |
| TCTGAGAAAATATCTATTGG+AGG | - | chr7.3:26627324-26627343 | MS.gene033528:intron | 30.0% | |
| TTGAGTTACCAAAAGATAGA+AGG | + | chr7.3:26625172-26625191 | None:intergenic | 30.0% | |
| TTGGAACAAAGATAAGAAGA+GGG | + | chr7.3:26624951-26624970 | None:intergenic | 30.0% | |
| ! | AAGCCAAAACAGCTTTTATA+TGG | - | chr7.3:26625638-26625657 | MS.gene033528:CDS | 30.0% |
| ! | ATTTTCTCAGATTTTCCACA+AGG | + | chr7.3:26627315-26627334 | None:intergenic | 30.0% |
| ! | CAATGAAAAGCATAGGTATT+AGG | + | chr7.3:26625926-26625945 | None:intergenic | 30.0% |
| ! | CATCCATATAAAAGCTGTTT+TGG | + | chr7.3:26625644-26625663 | None:intergenic | 30.0% |
| ! | TCAAAAGCGCATTAAAGAAT+TGG | - | chr7.3:26626182-26626201 | MS.gene033528:intron | 30.0% |
| !!! | AATCAATCATTTTAGAACGG+AGG | - | chr7.3:26626982-26627001 | MS.gene033528:CDS | 30.0% |
| !!! | ATCAATCATTTTAGAACGGA+GGG | - | chr7.3:26626983-26627002 | MS.gene033528:CDS | 30.0% |
| !!! | GATGAGACAAGTTTATTTTG+TGG | - | chr7.3:26625053-26625072 | MS.gene033528:intron | 30.0% |
| AAACTCTTGCTCATCAAATG+TGG | + | chr7.3:26624889-26624908 | None:intergenic | 35.0% | |
| AAGCAACAAAGAAGGTTAGA+AGG | - | chr7.3:26625261-26625280 | MS.gene033528:intron | 35.0% | |
| ACAACATGTTTGTGTAAGAC+AGG | + | chr7.3:26626031-26626050 | None:intergenic | 35.0% | |
| AGTAGTAGCATGTTACCATT+CGG | - | chr7.3:26626417-26626436 | MS.gene033528:intron | 35.0% | |
| AGTTGTTGTACTATTGCCTT+GGG | + | chr7.3:26624979-26624998 | None:intergenic | 35.0% | |
| ATAGGTCAATCATTGTGAGA+AGG | + | chr7.3:26626734-26626753 | None:intergenic | 35.0% | |
| CAAATCCAGCAATATTCAAG+TGG | - | chr7.3:26626229-26626248 | MS.gene033528:intron | 35.0% | |
| CTTTGTTCCAATAAAACCCA+AGG | - | chr7.3:26624960-26624979 | MS.gene033528:intron | 35.0% | |
| GACAGTACAAGATCACTTAA+TGG | - | chr7.3:26625292-26625311 | MS.gene033528:intron | 35.0% | |
| GATTTCCACTTGAATATTGC+TGG | + | chr7.3:26626237-26626256 | None:intergenic | 35.0% | |
| GCTTATGTTCACACCAAAAT+GGG | - | chr7.3:26627036-26627055 | MS.gene033528:CDS | 35.0% | |
| TAGTTGTTGTACTATTGCCT+TGG | + | chr7.3:26624980-26624999 | None:intergenic | 35.0% | |
| TCAACTTAGTAATGCTCACA+GGG | - | chr7.3:26626629-26626648 | MS.gene033528:intron | 35.0% | |
| TGAAGCTAGAGTCAAAGAAA+AGG | - | chr7.3:26626305-26626324 | MS.gene033528:intron | 35.0% | |
| TGCTTATGTTCACACCAAAA+TGG | - | chr7.3:26627035-26627054 | MS.gene033528:CDS | 35.0% | |
| TGTAATCAACATTTGTGCTC+AGG | - | chr7.3:26626452-26626471 | MS.gene033528:intron | 35.0% | |
| TTCCAAAGACTTGATTGAGT+TGG | + | chr7.3:26625120-26625139 | None:intergenic | 35.0% | |
| ! | ACCAAAAGATAGAAGGTATG+TGG | + | chr7.3:26625165-26625184 | None:intergenic | 35.0% |
| ! | ATGAATAAGTAGGGTGTCTA+GGG | - | chr7.3:26626565-26626584 | MS.gene033528:intron | 35.0% |
| ! | TGAGCATTACTAAGTTGACA+GGG | + | chr7.3:26626627-26626646 | None:intergenic | 35.0% |
| !! | ACTATTGCCTTGGGTTTTAT+TGG | + | chr7.3:26624970-26624989 | None:intergenic | 35.0% |
| !! | AGTTGGAGCTATTACTTTTG+TGG | + | chr7.3:26625103-26625122 | None:intergenic | 35.0% |
| !! | ATTATTTTATGCAAGGGTCG+AGG | + | chr7.3:26626597-26626616 | None:intergenic | 35.0% |
| !! | TGTGACATTGGTTCAATGAT+TGG | + | chr7.3:26625203-26625222 | None:intergenic | 35.0% |
| !!! | AAACTAACCTTTTTCAAGCC+AGG | + | chr7.3:26625377-26625396 | None:intergenic | 35.0% |
| AAGATCACTTAATGGCTGAG+AGG | - | chr7.3:26625300-26625319 | MS.gene033528:intron | 40.0% | |
| AATCTCAAGCAGTGATTCTG+AGG | + | chr7.3:26626286-26626305 | None:intergenic | 40.0% | |
| AGTGAAGGAAGCAACAAAGA+AGG | - | chr7.3:26625253-26625272 | MS.gene033528:intron | 40.0% | |
| CTCCAACTCAATCAAGTCTT+TGG | - | chr7.3:26625115-26625134 | MS.gene033528:intron | 40.0% | |
| GAACATAAGCATCCACAATG+AGG | + | chr7.3:26627026-26627045 | None:intergenic | 40.0% | |
| GTCAACTTAGTAATGCTCAC+AGG | - | chr7.3:26626628-26626647 | MS.gene033528:intron | 40.0% | |
| GTCAATCATTGTGAGAAGGA+TGG | + | chr7.3:26626730-26626749 | None:intergenic | 40.0% | |
| ! | AAAGATAGAAGGTATGTGGC+TGG | + | chr7.3:26625161-26625180 | None:intergenic | 40.0% |
| ! | ATTTTCCACAAGGTCATCCA+TGG | + | chr7.3:26627305-26627324 | None:intergenic | 40.0% |
| ! | CATGATACCTGGCTTGAAAA+AGG | - | chr7.3:26625367-26625386 | MS.gene033528:intron | 40.0% |
| ! | GATGAATAAGTAGGGTGTCT+AGG | - | chr7.3:26626564-26626583 | MS.gene033528:intron | 40.0% |
| ! | GCCACATACCTTCTATCTTT+TGG | - | chr7.3:26625161-26625180 | MS.gene033528:intron | 40.0% |
| ! | GTGAGCATTACTAAGTTGAC+AGG | + | chr7.3:26626628-26626647 | None:intergenic | 40.0% |
| ! | TGCTAAAGCTTTGATGCAGA+TGG | - | chr7.3:26627261-26627280 | MS.gene033528:intron | 40.0% |
| !! | ACAAGAATAGAAGCACCGAA+TGG | + | chr7.3:26626435-26626454 | None:intergenic | 40.0% |
| !! | CACATGATTCTGGTTCTTCA+AGG | + | chr7.3:26624926-26624945 | None:intergenic | 40.0% |
| !!! | CTTTTTCAAGCCAGGTATCA+TGG | + | chr7.3:26625369-26625388 | None:intergenic | 40.0% |
| ACTTAATGGCTGAGAGGAAG+AGG | - | chr7.3:26625306-26625325 | MS.gene033528:intron | 45.0% | |
| CTCTTGCTCATCAAATGTGG+TGG | + | chr7.3:26624886-26624905 | None:intergenic | 45.0% | |
| GAAGAGGGTTCACATGATTC+TGG | + | chr7.3:26624936-26624955 | None:intergenic | 45.0% | |
| GACAGATGAAGCAAGAGTGA+AGG | - | chr7.3:26625238-26625257 | MS.gene033528:intron | 45.0% | |
| GATGGATGAAGAAGACAGCA+TGG | - | chr7.3:26627279-26627298 | MS.gene033528:intron | 45.0% | |
| TTGCTCATCAAATGTGGTGG+TGG | + | chr7.3:26624883-26624902 | None:intergenic | 45.0% | |
| GCACTTTCAGCCATGATACC+TGG | - | chr7.3:26625356-26625375 | MS.gene033528:intron | 50.0% | |
| TGAAGAAGACAGCATGGCCA+TGG | - | chr7.3:26627285-26627304 | MS.gene033528:intron | 50.0% | |
| CATGGCCATGGATGACCTTG+TGG | - | chr7.3:26627297-26627316 | MS.gene033528:intron | 55.0% | |
| GGCTGAGAGGAAGAGGAGAA+GGG | - | chr7.3:26625313-26625332 | MS.gene033528:intron | 55.0% | |
| TGGCTGAGAGGAAGAGGAGA+AGG | - | chr7.3:26625312-26625331 | MS.gene033528:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 26624718 | 26627366 | 26624718 | ID=MS.gene033528 |
| chr7.3 | mRNA | 26624718 | 26627366 | 26624718 | ID=MS.gene033528.t1;Parent=MS.gene033528 |
| chr7.3 | exon | 26627331 | 26627366 | 26627331 | ID=MS.gene033528.t1.exon1;Parent=MS.gene033528.t1 |
| chr7.3 | CDS | 26627331 | 26627366 | 26627331 | ID=cds.MS.gene033528.t1;Parent=MS.gene033528.t1 |
| chr7.3 | exon | 26626696 | 26627235 | 26626696 | ID=MS.gene033528.t1.exon2;Parent=MS.gene033528.t1 |
| chr7.3 | CDS | 26626696 | 26627235 | 26626696 | ID=cds.MS.gene033528.t1;Parent=MS.gene033528.t1 |
| chr7.3 | exon | 26625611 | 26625952 | 26625611 | ID=MS.gene033528.t1.exon3;Parent=MS.gene033528.t1 |
| chr7.3 | CDS | 26625611 | 26625952 | 26625611 | ID=cds.MS.gene033528.t1;Parent=MS.gene033528.t1 |
| chr7.3 | exon | 26624718 | 26624804 | 26624718 | ID=MS.gene033528.t1.exon4;Parent=MS.gene033528.t1 |
| chr7.3 | CDS | 26624718 | 26624804 | 26624718 | ID=cds.MS.gene033528.t1;Parent=MS.gene033528.t1 |
| Gene Sequence |
| Protein sequence |
