Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033565.t1 | XP_024626779.1 | 73.7 | 361 | 46 | 7 | 1 | 315 | 1 | 358 | 1.90E-81 | 312.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033565.t1 | Q9LJG8 | 35.1 | 94 | 55 | 3 | 43 | 136 | 83 | 170 | 1.3e-09 | 65.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033565.t1 | A2Q1W1 | 83.3 | 299 | 40 | 5 | 1 | 292 | 1 | 296 | 7.4e-80 | 307.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene033565.t1 | TF | Trihelix |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033565.t1 | MTR_7g081190 | 84.488 | 361 | 7 | 6 | 1 | 315 | 1 | 358 | 0.0 | 585 |
| MS.gene033565.t1 | MTR_4g117990 | 47.727 | 308 | 96 | 10 | 35 | 303 | 35 | 316 | 1.23e-62 | 202 |
| MS.gene033565.t1 | MTR_5g017500 | 45.926 | 135 | 61 | 4 | 23 | 156 | 8 | 131 | 7.73e-27 | 105 |
| MS.gene033565.t1 | MTR_4g079960 | 41.000 | 100 | 48 | 4 | 15 | 111 | 8 | 99 | 3.54e-13 | 69.3 |
| MS.gene033565.t1 | MTR_4g079960 | 35.211 | 142 | 78 | 6 | 15 | 153 | 8 | 138 | 3.95e-13 | 69.3 |
| MS.gene033565.t1 | MTR_4g079960 | 41.000 | 100 | 48 | 4 | 15 | 111 | 8 | 99 | 7.06e-13 | 68.6 |
| MS.gene033565.t1 | MTR_1g061600 | 34.951 | 103 | 59 | 3 | 44 | 146 | 133 | 227 | 2.55e-11 | 64.7 |
| MS.gene033565.t1 | MTR_2g016140 | 27.103 | 107 | 75 | 1 | 32 | 138 | 11 | 114 | 2.59e-11 | 63.9 |
| MS.gene033565.t1 | MTR_2g016140 | 27.103 | 107 | 75 | 1 | 32 | 138 | 11 | 114 | 2.82e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033565.t1 | AT2G44730 | 38.810 | 353 | 125 | 10 | 26 | 313 | 46 | 372 | 5.62e-52 | 176 |
| MS.gene033565.t1 | AT3G24860 | 37.037 | 135 | 69 | 4 | 29 | 159 | 50 | 172 | 6.27e-22 | 94.4 |
| MS.gene033565.t1 | AT3G14180 | 34.375 | 96 | 57 | 3 | 43 | 138 | 83 | 172 | 4.67e-14 | 72.8 |
| MS.gene033565.t1 | AT3G58630 | 32.374 | 139 | 80 | 4 | 30 | 159 | 15 | 148 | 3.61e-12 | 66.6 |
| MS.gene033565.t1 | AT3G58630 | 32.374 | 139 | 80 | 4 | 30 | 159 | 15 | 148 | 3.75e-12 | 66.6 |
| MS.gene033565.t1 | AT3G10030 | 32.632 | 95 | 57 | 2 | 44 | 138 | 161 | 248 | 1.09e-11 | 65.9 |
| MS.gene033565.t1 | AT3G10030 | 32.632 | 95 | 57 | 2 | 44 | 138 | 161 | 248 | 1.15e-11 | 65.9 |
| MS.gene033565.t1 | AT3G54390 | 33.628 | 113 | 63 | 3 | 38 | 149 | 32 | 133 | 4.38e-11 | 63.2 |
| MS.gene033565.t1 | AT3G54390 | 33.628 | 113 | 63 | 3 | 38 | 149 | 48 | 149 | 4.73e-11 | 63.2 |
Find 102 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGGTTGGTGGTGGTGGTGC+TGG | 0.178332 | 7.4:-25278295 | None:intergenic |
| CCGGTGGTGGGTTTCGGATT+AGG | 0.234801 | 7.4:+25278869 | MS.gene033565:CDS |
| CTTCAAAGCTATGGATTCTA+TGG | 0.250239 | 7.4:+25278606 | MS.gene033565:CDS |
| TATGGATATGATTATGATTA+GGG | 0.250658 | 7.4:-25278672 | None:intergenic |
| TCCGGTGGTTCGGGTGGTTT+TGG | 0.257177 | 7.4:+25278841 | MS.gene033565:CDS |
| TGAAATGGTGAATGCTATTA+AGG | 0.263524 | 7.4:+25279068 | MS.gene033565:CDS |
| AGCGCTGCGGGTGGTGGTTC+TGG | 0.286831 | 7.4:+25278772 | MS.gene033565:CDS |
| GCGGGTGGTGGTTCTGGTTC+TGG | 0.287442 | 7.4:+25278778 | MS.gene033565:CDS |
| AAAATGAACAATTCAGAATC+TGG | 0.292564 | 7.4:+25278940 | MS.gene033565:CDS |
| CTATGGATATGATTATGATT+AGG | 0.304409 | 7.4:-25278673 | None:intergenic |
| GTGTTTCACGGTGGTTAATA+AGG | 0.308149 | 7.4:-25278702 | None:intergenic |
| CTATACCGGAATGGAGTTTC+CGG | 0.308151 | 7.4:+25278823 | MS.gene033565:CDS |
| CACGGTGGTTAATAAGGTTA+TGG | 0.312262 | 7.4:-25278696 | None:intergenic |
| AGGTTGGTGGTGGTGGTGCT+GGG | 0.313697 | 7.4:-25278294 | None:intergenic |
| AATGGAGTTTCCGGTGGTTC+GGG | 0.316820 | 7.4:+25278832 | MS.gene033565:CDS |
| GGTGGTGCTGGGAGGGAAAG+AGG | 0.321617 | 7.4:-25278283 | None:intergenic |
| GAATGGAGTTTCCGGTGGTT+CGG | 0.324771 | 7.4:+25278831 | MS.gene033565:CDS |
| GTGGTTCCGGTGGTGGGTTT+CGG | 0.326675 | 7.4:+25278863 | MS.gene033565:CDS |
| TTGGTGGTGGTGGTGCTGGG+AGG | 0.341538 | 7.4:-25278291 | None:intergenic |
| CGTTCAGTGTCGTCACAAAA+TGG | 0.351174 | 7.4:+25278495 | MS.gene033565:CDS |
| AGAGAGAGGTTGAGAGAGAA+AGG | 0.363741 | 7.4:+25279028 | MS.gene033565:CDS |
| ATCTGCAACTTCTTGCCAAT+GGG | 0.370295 | 7.4:-25278425 | None:intergenic |
| TCTCAGATCGATAACGTTTA+CGG | 0.384665 | 7.4:-25278525 | None:intergenic |
| GCATTCACCATTTCACCAAT+TGG | 0.387583 | 7.4:-25279060 | None:intergenic |
| TTAGCGACGGGTGAAGCGTT+AGG | 0.398115 | 7.4:-25278466 | None:intergenic |
| TGGTGGTGGTGGTGCTGGGA+GGG | 0.406759 | 7.4:-25278290 | None:intergenic |
| ATCAGAGCAGAAGTTTCTTC+CGG | 0.420804 | 7.4:-25278349 | None:intergenic |
| GTATAGCTTATCAAGACTTC+TGG | 0.422110 | 7.4:-25278806 | None:intergenic |
| ATCTCGTTCTTCTTCTTCGT+GGG | 0.425078 | 7.4:+25278579 | MS.gene033565:CDS |
| GTGGGTTCTCTTCAAAGCTA+TGG | 0.427834 | 7.4:+25278597 | MS.gene033565:CDS |
| CGAGATGAGGTTGGTGGTGG+TGG | 0.430206 | 7.4:-25278301 | None:intergenic |
| TCCGGTGTCCAGCACGGTGG+TGG | 0.436860 | 7.4:-25278331 | None:intergenic |
| ACCAAAACCACCCGAACCAC+CGG | 0.441911 | 7.4:-25278842 | None:intergenic |
| CTTAGAAGCGCTGCGGGTGG+TGG | 0.446289 | 7.4:+25278766 | MS.gene033565:CDS |
| GATCTCGTTCTTCTTCTTCG+TGG | 0.446498 | 7.4:+25278578 | MS.gene033565:CDS |
| TTGTGTTGGGGAAGAGAGAG+AGG | 0.447145 | 7.4:+25279004 | MS.gene033565:CDS |
| CGTCGTTATTTAGTGTTTCA+CGG | 0.450882 | 7.4:-25278714 | None:intergenic |
| GCCGTCTTCCACCACCGTGC+TGG | 0.451370 | 7.4:+25278323 | MS.gene033565:CDS |
| AAGAGATCCAATTGGTGAAA+TGG | 0.455113 | 7.4:+25279053 | MS.gene033565:CDS |
| GTGGTGCTGGGAGGGAAAGA+GGG | 0.460638 | 7.4:-25278282 | None:intergenic |
| TGGTGGAACAAGGCTTGTTA+AGG | 0.460822 | 7.4:+25278975 | MS.gene033565:CDS |
| GAAGAACGAGATCTCGGAAC+AGG | 0.461981 | 7.4:-25278568 | None:intergenic |
| TAGCGACGGGTGAAGCGTTA+GGG | 0.470209 | 7.4:-25278465 | None:intergenic |
| GAAGAGAGAGAGGGAGAGAG+AGG | 0.473857 | 7.4:+25279014 | MS.gene033565:CDS |
| CATCTGCAACTTCTTGCCAA+TGG | 0.473979 | 7.4:-25278426 | None:intergenic |
| ATCGATTCAGTTGGAGAAGA+TGG | 0.479775 | 7.4:-25278232 | None:intergenic |
| GGTACGGCTGATGGTGGTGA+TGG | 0.482216 | 7.4:-25278256 | None:intergenic |
| GGTTAATAAGGTTATGGCTA+TGG | 0.487606 | 7.4:-25278690 | None:intergenic |
| TGATGATGATGATCTTTATG+AGG | 0.488793 | 7.4:+25278741 | MS.gene033565:CDS |
| GTTAAGGAGAGAGTTGTGTT+GGG | 0.490506 | 7.4:+25278991 | MS.gene033565:CDS |
| TGTTAAGGAGAGAGTTGTGT+TGG | 0.492890 | 7.4:+25278990 | MS.gene033565:CDS |
| AAATGAACAATTCAGAATCT+GGG | 0.505187 | 7.4:+25278941 | MS.gene033565:CDS |
| TCTGGTTTATGCGGTGGAGA+AGG | 0.505466 | 7.4:-25278646 | None:intergenic |
| ACAATTCAGAATCTGGGTCT+AGG | 0.507620 | 7.4:+25278947 | MS.gene033565:CDS |
| TGCGCCACGCTTACACCCGT+TGG | 0.515491 | 7.4:-25278895 | None:intergenic |
| AGAGGGAGAGGTACGGCTGA+TGG | 0.518443 | 7.4:-25278265 | None:intergenic |
| GAATCTGGGTCTAGGATCAA+TGG | 0.522025 | 7.4:+25278955 | MS.gene033565:CDS |
| GAGAGAGGTTGAGAGAGAAA+GGG | 0.525048 | 7.4:+25279029 | MS.gene033565:CDS |
| AACCACCGGAAACTCCATTC+CGG | 0.526038 | 7.4:-25278828 | None:intergenic |
| TCCACCACCGTGCTGGACAC+CGG | 0.527476 | 7.4:+25278330 | MS.gene033565:CDS |
| GAGGAACTTAGAAGCGCTGC+GGG | 0.530673 | 7.4:+25278760 | MS.gene033565:CDS |
| TCCAGCACGGTGGTGGAAGA+CGG | 0.531155 | 7.4:-25278324 | None:intergenic |
| GAAAGGGAAAGAGATCCAAT+TGG | 0.539477 | 7.4:+25279045 | MS.gene033565:CDS |
| GAAGTCTTGATAAGCTATAC+CGG | 0.544701 | 7.4:+25278809 | MS.gene033565:CDS |
| GCTGGGAGGGAAAGAGGGAG+AGG | 0.546456 | 7.4:-25278277 | None:intergenic |
| CGGCGAGATGAGGTTGGTGG+TGG | 0.548164 | 7.4:-25278304 | None:intergenic |
| GTTTCGGATTAGGATTCCAA+CGG | 0.549612 | 7.4:+25278879 | MS.gene033565:CDS |
| GCTATGGATTCTATGGAGAA+AGG | 0.554265 | 7.4:+25278613 | MS.gene033565:CDS |
| TTAAGGAGAGAGTTGTGTTG+GGG | 0.559890 | 7.4:+25278992 | MS.gene033565:CDS |
| GGAGTTTCCGGTGGTTCGGG+TGG | 0.560032 | 7.4:+25278835 | MS.gene033565:CDS |
| TTTCGGATTAGGATTCCAAC+GGG | 0.561959 | 7.4:+25278880 | MS.gene033565:CDS |
| GAAGAAGAAGAACGAGATCT+CGG | 0.565455 | 7.4:-25278574 | None:intergenic |
| TGCGGTGGAGAAGGAGGAGA+AGG | 0.574396 | 7.4:-25278637 | None:intergenic |
| CAAATCTCAAAGCAACCCAT+TGG | 0.579861 | 7.4:+25278410 | MS.gene033565:CDS |
| GAGGGAAAGAGGGAGAGGTA+CGG | 0.580802 | 7.4:-25278272 | None:intergenic |
| GGTGTAAGCGTGGCGCAACC+CGG | 0.584893 | 7.4:+25278901 | MS.gene033565:CDS |
| CTTGATAAGCTATACCGGAA+TGG | 0.585220 | 7.4:+25278814 | MS.gene033565:CDS |
| CTAGGATCAATGGTGGAACA+AGG | 0.587512 | 7.4:+25278965 | MS.gene033565:CDS |
| GTACGGCTGATGGTGGTGAT+GGG | 0.588413 | 7.4:-25278255 | None:intergenic |
| GGTTTATGCGGTGGAGAAGG+AGG | 0.594549 | 7.4:-25278643 | None:intergenic |
| TGTGTTGGGGAAGAGAGAGA+GGG | 0.597007 | 7.4:+25279005 | MS.gene033565:CDS |
| TTTCGGAGAAGAACAAGAAG+AGG | 0.600983 | 7.4:+25279238 | MS.gene033565:CDS |
| TGGTGGAAGACGGCGAGATG+AGG | 0.605549 | 7.4:-25278314 | None:intergenic |
| TACCGGAATGGAGTTTCCGG+TGG | 0.607715 | 7.4:+25278826 | MS.gene033565:CDS |
| CAAGAAGAGGAATCTACGCA+AGG | 0.608538 | 7.4:+25279251 | MS.gene033565:CDS |
| CCTAATCCGAAACCCACCAC+CGG | 0.609435 | 7.4:-25278869 | None:intergenic |
| GTTTCTTCCGGTGTCCAGCA+CGG | 0.611210 | 7.4:-25278337 | None:intergenic |
| GGAAGACGGCGAGATGAGGT+TGG | 0.615913 | 7.4:-25278310 | None:intergenic |
| GATTCCAACGGGTGTAAGCG+TGG | 0.625455 | 7.4:+25278891 | MS.gene033565:CDS |
| AGACGGCGAGATGAGGTTGG+TGG | 0.626962 | 7.4:-25278307 | None:intergenic |
| TGGTGGTGGTGATGTTGCCA+TGG | 0.630730 | 7.4:-25278212 | None:intergenic |
| AAGAAGAGGAATCTACGCAA+GGG | 0.633744 | 7.4:+25279252 | MS.gene033565:CDS |
| GGGAGAGGTACGGCTGATGG+TGG | 0.634889 | 7.4:-25278262 | None:intergenic |
| GAACTTAGAAGCGCTGCGGG+TGG | 0.634991 | 7.4:+25278763 | MS.gene033565:CDS |
| GGTGATGGGATCGATTCAGT+TGG | 0.645748 | 7.4:-25278241 | None:intergenic |
| GTTAGGGCAACGAACAGCGA+CGG | 0.651606 | 7.4:-25278449 | None:intergenic |
| TGAGGAACTTAGAAGCGCTG+CGG | 0.656102 | 7.4:+25278759 | MS.gene033565:CDS |
| TCTGGGTCTAGGATCAATGG+TGG | 0.665360 | 7.4:+25278958 | MS.gene033565:CDS |
| TCAGTTGGAGAAGATGGTGG+TGG | 0.673207 | 7.4:-25278226 | None:intergenic |
| GATTCAGTTGGAGAAGATGG+TGG | 0.693067 | 7.4:-25278229 | None:intergenic |
| TCTTCCGGTGTCCAGCACGG+TGG | 0.693283 | 7.4:-25278334 | None:intergenic |
| CGTTATTTAGTGTTTCACGG+TGG | 0.748281 | 7.4:-25278711 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAAAACTAAACTAGT+TGG | - | chr7.4:25279474-25279493 | None:intergenic | 15.0% |
| !!! | ACTAGTTTAGTTTTTATTTT+AGG | + | chr7.4:25279474-25279493 | MS.gene033565:intron | 15.0% |
| !! | TATGGATATGATTATGATTA+GGG | - | chr7.4:25278675-25278694 | None:intergenic | 20.0% |
| !!! | AAAAACATGATTTTATCTCA+TGG | - | chr7.4:25279450-25279469 | None:intergenic | 20.0% |
| !!! | AAAACATGATTTTATCTCAT+GGG | - | chr7.4:25279449-25279468 | None:intergenic | 20.0% |
| !!! | GTTTAGTTTTTATTTTAGGT+AGG | + | chr7.4:25279478-25279497 | MS.gene033565:intron | 20.0% |
| ! | AAAATGAACAATTCAGAATC+TGG | + | chr7.4:25278940-25278959 | MS.gene033565:CDS | 25.0% |
| ! | AAATGAACAATTCAGAATCT+GGG | + | chr7.4:25278941-25278960 | MS.gene033565:CDS | 25.0% |
| ! | CTATGGATATGATTATGATT+AGG | - | chr7.4:25278676-25278695 | None:intergenic | 25.0% |
| ! | TAAATCCATATAGTCAATAG+TGG | + | chr7.4:25279376-25279395 | MS.gene033565:intron | 25.0% |
| !! | AAACATGATTTTATCTCATG+GGG | - | chr7.4:25279448-25279467 | None:intergenic | 25.0% |
| !! | GATTCTGAATTGTTCATTTT+TGG | - | chr7.4:25278940-25278959 | None:intergenic | 25.0% |
| !!! | TTTTGGATAGAATTTTGATC+CGG | - | chr7.4:25278923-25278942 | None:intergenic | 25.0% |
| TGAAATGGTGAATGCTATTA+AGG | + | chr7.4:25279068-25279087 | MS.gene033565:CDS | 30.0% | |
| ! | AACATGATTTTATCTCATGG+GGG | - | chr7.4:25279447-25279466 | None:intergenic | 30.0% |
| ! | TGATGATGATGATCTTTATG+AGG | + | chr7.4:25278741-25278760 | MS.gene033565:CDS | 30.0% |
| ! | TGATTATGATTAGGGTTTTC+TGG | - | chr7.4:25278667-25278686 | None:intergenic | 30.0% |
| !! | TTTGGATAGAATTTTGATCC+GGG | - | chr7.4:25278922-25278941 | None:intergenic | 30.0% |
| !!! | CTATTAAGGTTTTGAGAGAT+GGG | + | chr7.4:25279082-25279101 | MS.gene033565:intron | 30.0% |
| AAGAGATCCAATTGGTGAAA+TGG | + | chr7.4:25279053-25279072 | MS.gene033565:CDS | 35.0% | |
| AGAGATTGAAACTATGCGTA+TGG | + | chr7.4:25279143-25279162 | MS.gene033565:intron | 35.0% | |
| ATCCATATAGTCAATAGTGG+TGG | + | chr7.4:25279379-25279398 | MS.gene033565:intron | 35.0% | |
| CGTCGTTATTTAGTGTTTCA+CGG | - | chr7.4:25278717-25278736 | None:intergenic | 35.0% | |
| CTTCAAAGCTATGGATTCTA+TGG | + | chr7.4:25278606-25278625 | MS.gene033565:CDS | 35.0% | |
| GAAGTCTTGATAAGCTATAC+CGG | + | chr7.4:25278809-25278828 | MS.gene033565:CDS | 35.0% | |
| GGATTTATCTACGATTCTGA+GGG | - | chr7.4:25279363-25279382 | None:intergenic | 35.0% | |
| GGTTAATAAGGTTATGGCTA+TGG | - | chr7.4:25278693-25278712 | None:intergenic | 35.0% | |
| GTATAGCTTATCAAGACTTC+TGG | - | chr7.4:25278809-25278828 | None:intergenic | 35.0% | |
| TCTCAGATCGATAACGTTTA+CGG | - | chr7.4:25278528-25278547 | None:intergenic | 35.0% | |
| TGGATTTATCTACGATTCTG+AGG | - | chr7.4:25279364-25279383 | None:intergenic | 35.0% | |
| ! | TACCACCACTATTGACTATA+TGG | - | chr7.4:25279384-25279403 | None:intergenic | 35.0% |
| !!! | GCTATTAAGGTTTTGAGAGA+TGG | + | chr7.4:25279081-25279100 | MS.gene033565:intron | 35.0% |
| !!! | TTAGGGTTTTCTGGTTTATG+CGG | - | chr7.4:25278658-25278677 | None:intergenic | 35.0% |
| AAGAAGAGGAATCTACGCAA+GGG | + | chr7.4:25279252-25279271 | MS.gene033565:CDS | 40.0% | |
| ACAATTCAGAATCTGGGTCT+AGG | + | chr7.4:25278947-25278966 | MS.gene033565:CDS | 40.0% | |
| ATCAGAGCAGAAGTTTCTTC+CGG | - | chr7.4:25278352-25278371 | None:intergenic | 40.0% | |
| ATCTCGTTCTTCTTCTTCGT+GGG | + | chr7.4:25278579-25278598 | MS.gene033565:CDS | 40.0% | |
| ATCTGCAACTTCTTGCCAAT+GGG | - | chr7.4:25278428-25278447 | None:intergenic | 40.0% | |
| CAAATCTCAAAGCAACCCAT+TGG | + | chr7.4:25278410-25278429 | MS.gene033565:CDS | 40.0% | |
| CACGGTGGTTAATAAGGTTA+TGG | - | chr7.4:25278699-25278718 | None:intergenic | 40.0% | |
| CGTTATTTAGTGTTTCACGG+TGG | - | chr7.4:25278714-25278733 | None:intergenic | 40.0% | |
| CTTGATAAGCTATACCGGAA+TGG | + | chr7.4:25278814-25278833 | MS.gene033565:CDS | 40.0% | |
| GAAAGGGAAAGAGATCCAAT+TGG | + | chr7.4:25279045-25279064 | MS.gene033565:CDS | 40.0% | |
| GAAGAAGAAGAACGAGATCT+CGG | - | chr7.4:25278577-25278596 | None:intergenic | 40.0% | |
| GCATTCACCATTTCACCAAT+TGG | - | chr7.4:25279063-25279082 | None:intergenic | 40.0% | |
| GCTATGGATTCTATGGAGAA+AGG | + | chr7.4:25278613-25278632 | MS.gene033565:CDS | 40.0% | |
| GTGTTTCACGGTGGTTAATA+AGG | - | chr7.4:25278705-25278724 | None:intergenic | 40.0% | |
| GTTAAGGAGAGAGTTGTGTT+GGG | + | chr7.4:25278991-25279010 | MS.gene033565:CDS | 40.0% | |
| TGAAACTATGCGTATGGAGA+TGG | + | chr7.4:25279149-25279168 | MS.gene033565:intron | 40.0% | |
| TGTTAAGGAGAGAGTTGTGT+TGG | + | chr7.4:25278990-25279009 | MS.gene033565:CDS | 40.0% | |
| TTAAGGAGAGAGTTGTGTTG+GGG | + | chr7.4:25278992-25279011 | MS.gene033565:CDS | 40.0% | |
| TTTCGGAGAAGAACAAGAAG+AGG | + | chr7.4:25279238-25279257 | MS.gene033565:CDS | 40.0% | |
| ! | AGCTTTTGCGAAAGCTGTTT+CGG | + | chr7.4:25279221-25279240 | MS.gene033565:CDS | 40.0% |
| ! | ATCGATTCAGTTGGAGAAGA+TGG | - | chr7.4:25278235-25278254 | None:intergenic | 40.0% |
| ! | CATTTTGTGACGACACTGAA+CGG | - | chr7.4:25278497-25278516 | None:intergenic | 40.0% |
| ! | GAAGCGTACTGAGATGATTT+TGG | + | chr7.4:25279176-25279195 | MS.gene033565:intron | 40.0% |
| ! | GTTTCGGATTAGGATTCCAA+CGG | + | chr7.4:25278879-25278898 | MS.gene033565:CDS | 40.0% |
| ! | TTTCGGATTAGGATTCCAAC+GGG | + | chr7.4:25278880-25278899 | MS.gene033565:CDS | 40.0% |
| AGAGAGAGGTTGAGAGAGAA+AGG | + | chr7.4:25279028-25279047 | MS.gene033565:CDS | 45.0% | |
| CAAGAAGAGGAATCTACGCA+AGG | + | chr7.4:25279251-25279270 | MS.gene033565:CDS | 45.0% | |
| CATCTGCAACTTCTTGCCAA+TGG | - | chr7.4:25278429-25278448 | None:intergenic | 45.0% | |
| CGCGAAAAATGGTACTCTCT+CGG | + | chr7.4:25278382-25278401 | MS.gene033565:CDS | 45.0% | |
| CGTTCAGTGTCGTCACAAAA+TGG | + | chr7.4:25278495-25278514 | MS.gene033565:CDS | 45.0% | |
| CTATACCGGAATGGAGTTTC+CGG | + | chr7.4:25278823-25278842 | MS.gene033565:CDS | 45.0% | |
| GAGAATGGAGCAGATGAAGA+TGG | + | chr7.4:25279110-25279129 | MS.gene033565:intron | 45.0% | |
| GAGAGAGGTTGAGAGAGAAA+GGG | + | chr7.4:25279029-25279048 | MS.gene033565:CDS | 45.0% | |
| GATCTCGTTCTTCTTCTTCG+TGG | + | chr7.4:25278578-25278597 | MS.gene033565:CDS | 45.0% | |
| GATTCAGTTGGAGAAGATGG+TGG | - | chr7.4:25278232-25278251 | None:intergenic | 45.0% | |
| GTGGGTTCTCTTCAAAGCTA+TGG | + | chr7.4:25278597-25278616 | MS.gene033565:CDS | 45.0% | |
| TCGATTCCTACCGCGAAAAA+TGG | + | chr7.4:25278371-25278390 | MS.gene033565:CDS | 45.0% | |
| ! | CTAGGATCAATGGTGGAACA+AGG | + | chr7.4:25278965-25278984 | MS.gene033565:CDS | 45.0% |
| ! | GAATCTGGGTCTAGGATCAA+TGG | + | chr7.4:25278955-25278974 | MS.gene033565:CDS | 45.0% |
| ! | GAGAGATGGGTTTGTGAGAA+TGG | + | chr7.4:25279095-25279114 | MS.gene033565:intron | 45.0% |
| !! | AGAGTACCATTTTTCGCGGT+AGG | - | chr7.4:25278380-25278399 | None:intergenic | 45.0% |
| !! | TGGTGGAACAAGGCTTGTTA+AGG | + | chr7.4:25278975-25278994 | MS.gene033565:CDS | 45.0% |
| !!! | CGAGAGAGTACCATTTTTCG+CGG | - | chr7.4:25278384-25278403 | None:intergenic | 45.0% |
| !!! | TGATTTTGGAGTCTCAGCAG+AGG | + | chr7.4:25279190-25279209 | MS.gene033565:intron | 45.0% |
| AACCACCGGAAACTCCATTC+CGG | - | chr7.4:25278831-25278850 | None:intergenic | 50.0% | |
| AATGGAGTTTCCGGTGGTTC+GGG | + | chr7.4:25278832-25278851 | MS.gene033565:CDS | 50.0% | |
| GAAGAACGAGATCTCGGAAC+AGG | - | chr7.4:25278571-25278590 | None:intergenic | 50.0% | |
| GAATGGAGTTTCCGGTGGTT+CGG | + | chr7.4:25278831-25278850 | MS.gene033565:CDS | 50.0% | |
| GGAGCAGATGAAGATGGAGA+TGG | + | chr7.4:25279116-25279135 | MS.gene033565:intron | 50.0% | |
| TGTGTTGGGGAAGAGAGAGA+GGG | + | chr7.4:25279005-25279024 | MS.gene033565:CDS | 50.0% | |
| TTGTGTTGGGGAAGAGAGAG+AGG | + | chr7.4:25279004-25279023 | MS.gene033565:CDS | 50.0% | |
| ! | TCAGTTGGAGAAGATGGTGG+TGG | - | chr7.4:25278229-25278248 | None:intergenic | 50.0% |
| ! | TCTGGGTCTAGGATCAATGG+TGG | + | chr7.4:25278958-25278977 | MS.gene033565:CDS | 50.0% |
| ! | TCTGGTTTATGCGGTGGAGA+AGG | - | chr7.4:25278649-25278668 | None:intergenic | 50.0% |
| !! | CTGAACGGCAGTTTTAGCGA+CGG | - | chr7.4:25278482-25278501 | None:intergenic | 50.0% |
| !! | GGTGATGGGATCGATTCAGT+TGG | - | chr7.4:25278244-25278263 | None:intergenic | 50.0% |
| !! | TGAACGGCAGTTTTAGCGAC+GGG | - | chr7.4:25278481-25278500 | None:intergenic | 50.0% |
| !! | TGAGGAACTTAGAAGCGCTG+CGG | + | chr7.4:25278759-25278778 | MS.gene033565:CDS | 50.0% |
| !!! | GGGTTTTCTGGTTTATGCGG+TGG | - | chr7.4:25278655-25278674 | None:intergenic | 50.0% |
| ACCAAAACCACCCGAACCAC+CGG | - | chr7.4:25278845-25278864 | None:intergenic | 55.0% | |
| CCTAATCCGAAACCCACCAC+CGG | - | chr7.4:25278872-25278891 | None:intergenic | 55.0% | |
| GAAGAGAGAGAGGGAGAGAG+AGG | + | chr7.4:25279014-25279033 | MS.gene033565:CDS | 55.0% | |
| GAGGGAAAGAGGGAGAGGTA+CGG | - | chr7.4:25278275-25278294 | None:intergenic | 55.0% | |
| GATTCCAACGGGTGTAAGCG+TGG | + | chr7.4:25278891-25278910 | MS.gene033565:CDS | 55.0% | |
| GGTTTATGCGGTGGAGAAGG+AGG | - | chr7.4:25278646-25278665 | None:intergenic | 55.0% | |
| GTTAGGGCAACGAACAGCGA+CGG | - | chr7.4:25278452-25278471 | None:intergenic | 55.0% | |
| GTTTCTTCCGGTGTCCAGCA+CGG | - | chr7.4:25278340-25278359 | None:intergenic | 55.0% | |
| TACCGGAATGGAGTTTCCGG+TGG | + | chr7.4:25278826-25278845 | MS.gene033565:CDS | 55.0% | |
| ! | TAGCGACGGGTGAAGCGTTA+GGG | - | chr7.4:25278468-25278487 | None:intergenic | 55.0% |
| ! | TTAGCGACGGGTGAAGCGTT+AGG | - | chr7.4:25278469-25278488 | None:intergenic | 55.0% |
| !! | GAGGAACTTAGAAGCGCTGC+GGG | + | chr7.4:25278760-25278779 | MS.gene033565:CDS | 55.0% |
| !! | GTACGGCTGATGGTGGTGAT+GGG | - | chr7.4:25278258-25278277 | None:intergenic | 55.0% |
| !! | GTTTTGGTGGTTCCGGTGGT+GGG | + | chr7.4:25278857-25278876 | MS.gene033565:CDS | 55.0% |
| !!! | TCGGGTGGTTTTGGTGGTTC+CGG | + | chr7.4:25278850-25278869 | MS.gene033565:CDS | 55.0% |
| AGACGGCGAGATGAGGTTGG+TGG | - | chr7.4:25278310-25278329 | None:intergenic | 60.0% | |
| GGAAGACGGCGAGATGAGGT+TGG | - | chr7.4:25278313-25278332 | None:intergenic | 60.0% | |
| TGCGGTGGAGAAGGAGGAGA+AGG | - | chr7.4:25278640-25278659 | None:intergenic | 60.0% | |
| TGGTGGAAGACGGCGAGATG+AGG | - | chr7.4:25278317-25278336 | None:intergenic | 60.0% | |
| ! | AGAGGGAGAGGTACGGCTGA+TGG | - | chr7.4:25278268-25278287 | None:intergenic | 60.0% |
| ! | GTGGTGCTGGGAGGGAAAGA+GGG | - | chr7.4:25278285-25278304 | None:intergenic | 60.0% |
| !! | AGGTTGGTGGTGGTGGTGCT+GGG | - | chr7.4:25278297-25278316 | None:intergenic | 60.0% |
| !! | CCGGTGGTGGGTTTCGGATT+AGG | + | chr7.4:25278869-25278888 | MS.gene033565:CDS | 60.0% |
| !! | CGAGATGAGGTTGGTGGTGG+TGG | - | chr7.4:25278304-25278323 | None:intergenic | 60.0% |
| !! | GAACTTAGAAGCGCTGCGGG+TGG | + | chr7.4:25278763-25278782 | MS.gene033565:CDS | 60.0% |
| !! | GGTACGGCTGATGGTGGTGA+TGG | - | chr7.4:25278259-25278278 | None:intergenic | 60.0% |
| !! | GGTTTTGGTGGTTCCGGTGG+TGG | + | chr7.4:25278856-25278875 | MS.gene033565:CDS | 60.0% |
| !! | GTGGTTCCGGTGGTGGGTTT+CGG | + | chr7.4:25278863-25278882 | MS.gene033565:CDS | 60.0% |
| !! | TCCAGCACGGTGGTGGAAGA+CGG | - | chr7.4:25278327-25278346 | None:intergenic | 60.0% |
| !! | TCCGGTGGTTCGGGTGGTTT+TGG | + | chr7.4:25278841-25278860 | MS.gene033565:CDS | 60.0% |
| !!! | GGTGGTTCGGGTGGTTTTGG+TGG | + | chr7.4:25278844-25278863 | MS.gene033565:CDS | 60.0% |
| !!! | GGTGGTTTTGGTGGTTCCGG+TGG | + | chr7.4:25278853-25278872 | MS.gene033565:CDS | 60.0% |
| GCTGGGAGGGAAAGAGGGAG+AGG | - | chr7.4:25278280-25278299 | None:intergenic | 65.0% | |
| GGTGTAAGCGTGGCGCAACC+CGG | + | chr7.4:25278901-25278920 | MS.gene033565:CDS | 65.0% | |
| TCCACCACCGTGCTGGACAC+CGG | + | chr7.4:25278330-25278349 | MS.gene033565:CDS | 65.0% | |
| TCTTCCGGTGTCCAGCACGG+TGG | - | chr7.4:25278337-25278356 | None:intergenic | 65.0% | |
| TGCGCCACGCTTACACCCGT+TGG | - | chr7.4:25278898-25278917 | None:intergenic | 65.0% | |
| ! | GGAGTTTCCGGTGGTTCGGG+TGG | + | chr7.4:25278835-25278854 | MS.gene033565:CDS | 65.0% |
| ! | GGGAGAGGTACGGCTGATGG+TGG | - | chr7.4:25278265-25278284 | None:intergenic | 65.0% |
| ! | GGTGGTGCTGGGAGGGAAAG+AGG | - | chr7.4:25278286-25278305 | None:intergenic | 65.0% |
| !! | CGGCGAGATGAGGTTGGTGG+TGG | - | chr7.4:25278307-25278326 | None:intergenic | 65.0% |
| !! | CTTAGAAGCGCTGCGGGTGG+TGG | + | chr7.4:25278766-25278785 | MS.gene033565:CDS | 65.0% |
| !! | GAGGTTGGTGGTGGTGGTGC+TGG | - | chr7.4:25278298-25278317 | None:intergenic | 65.0% |
| !! | GCGGGTGGTGGTTCTGGTTC+TGG | + | chr7.4:25278778-25278797 | MS.gene033565:CDS | 65.0% |
| !! | TGGTGGTGGTGGTGCTGGGA+GGG | - | chr7.4:25278293-25278312 | None:intergenic | 65.0% |
| !! | TTGGTGGTGGTGGTGCTGGG+AGG | - | chr7.4:25278294-25278313 | None:intergenic | 65.0% |
| GCCGTCTTCCACCACCGTGC+TGG | + | chr7.4:25278323-25278342 | MS.gene033565:CDS | 70.0% | |
| TCCGGTGTCCAGCACGGTGG+TGG | - | chr7.4:25278334-25278353 | None:intergenic | 70.0% | |
| ! | AGCGCTGCGGGTGGTGGTTC+TGG | + | chr7.4:25278772-25278791 | MS.gene033565:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 25278214 | 25279512 | 25278214 | ID=MS.gene033565 |
| chr7.4 | mRNA | 25278214 | 25279512 | 25278214 | ID=MS.gene033565.t1;Parent=MS.gene033565 |
| chr7.4 | exon | 25278214 | 25279089 | 25278214 | ID=MS.gene033565.t1.exon1;Parent=MS.gene033565.t1 |
| chr7.4 | CDS | 25278214 | 25279089 | 25278214 | ID=cds.MS.gene033565.t1;Parent=MS.gene033565.t1 |
| chr7.4 | exon | 25279207 | 25279273 | 25279207 | ID=MS.gene033565.t1.exon2;Parent=MS.gene033565.t1 |
| chr7.4 | CDS | 25279207 | 25279273 | 25279207 | ID=cds.MS.gene033565.t1;Parent=MS.gene033565.t1 |
| chr7.4 | exon | 25279496 | 25279512 | 25279496 | ID=MS.gene033565.t1.exon3;Parent=MS.gene033565.t1 |
| chr7.4 | CDS | 25279496 | 25279512 | 25279496 | ID=cds.MS.gene033565.t1;Parent=MS.gene033565.t1 |
| Gene Sequence |
| Protein sequence |
