AlfalfaGEDB | MS.gene033664

M. sativa cultivar XinJiangDaYe / MS.gene033664

KEGG: -
GO: GO:0003674 GO:0003676 GO:0005488 GO:0097159 GO:1901363
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene033664.t1	XP_003624437.1	83	200	21	5	1	199	1	188	1.10E-39	173.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene033664.t1	Q9FFX4	87.9	33	4	0	40	72	36	68	3.9e-09	63.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene033664.t1	G7KW55	83.0	200	21	5	1	199	1	188	8.0e-40	173.3

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene033664.t1	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene033664.t1	MTR_7g083210	77.000	200	33	7	1	199	1	188	1.88e-89	260
MS.gene033664.t1	MTR_7g086860	32.381	210	74	7	1	199	1	153	1.30e-19	81.6
MS.gene033664.t1	MTR_1g107055	52.830	53	19	1	39	85	63	115	1.98e-12	63.5
MS.gene033664.t1	MTR_1g013130	75.758	33	8	0	40	72	94	126	7.35e-12	62.8
MS.gene033664.t1	MTR_4g128340	75.758	33	8	0	40	72	45	77	9.23e-12	61.2
MS.gene033664.t1	MTR_3g065020	72.727	33	9	0	40	72	86	118	5.54e-11	60.1
MS.gene033664.t1	MTR_4g006575	75.758	33	8	0	40	72	67	99	5.71e-11	60.1
MS.gene033664.t1	MTR_4g006600	75.758	33	8	0	40	72	67	99	5.71e-11	60.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene033664.t1	AT5G14010	66.000	50	17	0	40	89	36	85	7.11e-15	69.3
MS.gene033664.t1	AT5G57520	54.545	55	24	1	40	94	50	103	1.10e-13	65.9
MS.gene033664.t1	AT1G24625	72.727	33	9	0	40	72	57	89	9.42e-11	59.3

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Find 38 sgRNAs with CRISPR-Local

Find 39 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACATTGTTGGTGTTGTTGT+TGG	0.428219	7.4:-23732010	None:intergenic
AAGTTTGTTGTTGTTTCATG+AGG	0.595946	7.4:-23731792	None:intergenic
AATGGTTATGGTTATGCTTC+TGG	0.361952	7.4:+23732204	MS.gene033664:CDS
AGAAGCAGAAGCAGCATTGT+TGG	0.377902	7.4:-23732271	None:intergenic
AGGAACTCGTAGATGGCTGA+AGG	0.562270	7.4:-23731772	None:intergenic
ATGCTTCCTTGCAATGGTTA+TGG	0.317002	7.4:+23732192	MS.gene033664:CDS
ATTGTTGGTGTTGTTGTTGG+TGG	0.489563	7.4:-23732007	None:intergenic
CATCCTATGCTTCCTTGCAA+TGG	0.462936	7.4:+23732186	MS.gene033664:CDS
CTTCTGCTAGTTGTTCTTGG+TGG	0.497901	7.4:-23731823	None:intergenic
CTTGAGAAGTGTAGAACTTA+CGG	0.498780	7.4:-23731906	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGAAAAAGGAACAACATTGT+TGG	-	chr7.4:23732025-23732044	None:intergenic	30.0%
TTCATCATCATTACCCTTAT+TGG	+	chr7.4:23732097-23732116	MS.gene033664:CDS	30.0%
AATGGTTATGGTTATGCTTC+TGG	+	chr7.4:23732204-23732223	MS.gene033664:CDS	35.0%
GTTTCTGAACAACATGAACA+AGG	+	chr7.4:23732066-23732085	MS.gene033664:CDS	35.0%
TTACCCTTATTGGCAACAAA+TGG	+	chr7.4:23732107-23732126	MS.gene033664:CDS	35.0%
ATGCTTCCTTGCAATGGTTA+TGG	+	chr7.4:23732192-23732211	MS.gene033664:CDS	40.0%
GATCTTCTGCTAGTTGTTCT+TGG	-	chr7.4:23731829-23731848	None:intergenic	40.0%
GCATAACCATAACCATTGCA+AGG	-	chr7.4:23732201-23732220	None:intergenic	40.0%
GCTTCAACATGTTGATGTTG+TGG	-	chr7.4:23732153-23732172	None:intergenic	40.0%
TCTGAACAACATGAACAAGG+TGG	+	chr7.4:23732069-23732088	MS.gene033664:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.4	gene	23731763	23732362	23731763	ID=MS.gene033664
chr7.4	mRNA	23731763	23732362	23731763	ID=MS.gene033664.t1;Parent=MS.gene033664
chr7.4	exon	23731763	23732362	23731763	ID=MS.gene033664.t1.exon1;Parent=MS.gene033664.t1
chr7.4	CDS	23731763	23732362	23731763	ID=cds.MS.gene033664.t1;Parent=MS.gene033664.t1

Gene Sequence

>MS.gene033664

ATGGCAGACCCTTCAGCCATCTACGAGTTCCTCATGAAACAACAACAAACTTCATCATCACCACCAAGAACAACTAGCAGAAGATCATCACAGCAACAACTTGCAGCTTCAACAACAAGAACTTTTCAGTGTCAATATTGTCACCGTAAGTTCTACACTTCTCAAGCTCTTGGTGGTCACCAAAATGCTCACAAACTTGAAAGAGCTGCTGCTAGATCAAAAACCATCAACCTGATCAACACCACCACCAACAACAACACCAACAATGTTGTTCCTTTTTCATCACCACCACCACAGTCACATGTTTCTGAACAACATGAACAAGGTGGTTTCTTTCATCATCATTACCCTTATTGGCAACAAATGGAACCTATACAGTTTCAAACACCACAACATCAACATGTTGAAGCAACAAACACTTTTCATCCTATGCTTCCTTGCAATGGTTATGGTTATGCTTCTGGTTTTGGTTTTGGTGCTTCATCTTCAACTCCTCACTATGTTTTCACCAACAATGCTGCTTCTGCTTCTGCTTCTACTACTCCTCAGTTTGTTGATGCTTCTGACCATGTCAATCTTGACCTCACTCTTCATCTCTGA

Protein sequence

>MS.gene033664.t1

MADPSAIYEFLMKQQQTSSSPPRTTSRRSSQQQLAASTTRTFQCQYCHRKFYTSQALGGHQNAHKLERAAARSKTINLINTTTNNNTNNVVPFSSPPPQSHVSEQHEQGGFFHHHYPYWQQMEPIQFQTPQHQHVEATNTFHPMLPCNGYGYASGFGFGASSSTPHYVFTNNAASASASTTPQFVDASDHVNLDLTLHL