Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033691.t1 | XP_003624470.1 | 84.8 | 296 | 20 | 2 | 1 | 275 | 23 | 314 | 5.90E-124 | 453.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033691.t1 | Q9LW31 | 52.1 | 240 | 65 | 5 | 78 | 275 | 82 | 313 | 9.1e-57 | 221.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033691.t1 | Q2HUJ5 | 84.8 | 296 | 20 | 2 | 1 | 275 | 23 | 314 | 4.2e-124 | 453.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene033691.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033691.t1 | MTR_7g083700 | 89.865 | 296 | 5 | 2 | 1 | 275 | 23 | 314 | 0.0 | 540 |
| MS.gene033691.t1 | MTR_7g059330 | 54.054 | 111 | 51 | 0 | 82 | 192 | 618 | 728 | 1.61e-33 | 129 |
| MS.gene033691.t1 | MTR_2g011940 | 39.394 | 132 | 71 | 3 | 87 | 213 | 352 | 479 | 4.03e-21 | 93.2 |
| MS.gene033691.t1 | MTR_2g011940 | 39.394 | 132 | 71 | 3 | 87 | 213 | 352 | 479 | 4.36e-21 | 93.2 |
| MS.gene033691.t1 | MTR_5g075410 | 49.412 | 85 | 42 | 1 | 87 | 171 | 321 | 404 | 2.51e-20 | 90.9 |
| MS.gene033691.t1 | MTR_4g028130 | 39.806 | 103 | 61 | 1 | 87 | 189 | 314 | 415 | 2.77e-20 | 90.9 |
| MS.gene033691.t1 | MTR_4g088605 | 35.714 | 154 | 91 | 4 | 44 | 191 | 56 | 207 | 4.21e-20 | 87.8 |
| MS.gene033691.t1 | MTR_3g467380 | 40.777 | 103 | 60 | 1 | 87 | 189 | 338 | 439 | 5.18e-20 | 90.1 |
| MS.gene033691.t1 | MTR_2g011940 | 41.463 | 123 | 63 | 3 | 87 | 204 | 343 | 461 | 1.45e-19 | 88.6 |
| MS.gene033691.t1 | MTR_4g028130 | 39.048 | 105 | 63 | 1 | 87 | 191 | 314 | 417 | 6.66e-19 | 86.7 |
| MS.gene033691.t1 | MTR_4g028130 | 39.048 | 105 | 63 | 1 | 87 | 191 | 314 | 417 | 8.45e-19 | 86.7 |
| MS.gene033691.t1 | MTR_7g073240 | 32.500 | 160 | 91 | 4 | 36 | 189 | 74 | 222 | 1.82e-18 | 84.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033691.t1 | AT3G26790 | 50.680 | 294 | 100 | 10 | 23 | 275 | 24 | 313 | 9.62e-85 | 256 |
| MS.gene033691.t1 | AT3G24650 | 57.407 | 108 | 46 | 0 | 81 | 188 | 565 | 672 | 8.30e-35 | 132 |
| MS.gene033691.t1 | AT1G28300 | 49.606 | 127 | 64 | 0 | 79 | 205 | 162 | 288 | 1.09e-34 | 128 |
| MS.gene033691.t1 | AT2G30470 | 39.806 | 103 | 61 | 1 | 87 | 189 | 294 | 395 | 1.43e-21 | 94.7 |
| MS.gene033691.t1 | AT4G32010 | 37.500 | 128 | 70 | 2 | 87 | 214 | 281 | 398 | 2.99e-21 | 93.6 |
| MS.gene033691.t1 | AT4G32010 | 37.500 | 128 | 70 | 2 | 87 | 214 | 285 | 402 | 3.00e-21 | 93.6 |
| MS.gene033691.t1 | AT4G21550 | 34.848 | 132 | 79 | 4 | 87 | 218 | 327 | 451 | 1.65e-17 | 82.4 |
| MS.gene033691.t1 | AT4G21550 | 34.848 | 132 | 79 | 4 | 87 | 218 | 327 | 451 | 1.66e-17 | 82.4 |
| MS.gene033691.t1 | AT4G21550 | 38.835 | 103 | 60 | 2 | 87 | 189 | 327 | 426 | 1.79e-17 | 82.4 |
| MS.gene033691.t1 | AT1G13260 | 32.000 | 150 | 92 | 6 | 49 | 193 | 151 | 295 | 2.01e-11 | 63.9 |
| MS.gene033691.t1 | AT4G01500 | 31.405 | 121 | 79 | 3 | 56 | 175 | 4 | 121 | 2.35e-11 | 63.5 |
Find 49 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTGTTCTTCAACTCCTTT+TGG | 0.172423 | 7.3:+24732486 | None:intergenic |
| TGATCCAATTCTTGAGTAAT+TGG | 0.227933 | 7.3:+24731420 | None:intergenic |
| ATTATCTTGGTAAACCATAA+TGG | 0.319330 | 7.3:+24731778 | None:intergenic |
| GGTTTAGTTGCTGCTGCATT+TGG | 0.326686 | 7.3:-24734508 | MS.gene033691:CDS |
| ATTGGATCAGTTGAAACATT+TGG | 0.328924 | 7.3:-24731406 | MS.gene033691:CDS |
| TACATTCGACTGTTATTGTT+AGG | 0.354796 | 7.3:+24731946 | None:intergenic |
| TGCATTACTACAGGTAATTC+AGG | 0.355023 | 7.3:-24731641 | MS.gene033691:intron |
| ATGACCAATTACTCAAGAAT+TGG | 0.363460 | 7.3:-24731424 | MS.gene033691:CDS |
| ACGCTTTGGAGACTCCATTA+TGG | 0.373590 | 7.3:-24731792 | MS.gene033691:CDS |
| GAATTCCTTCCTTCGATTCA+AGG | 0.374741 | 7.3:+24732283 | None:intergenic |
| CTGCATTTGGAACTGTTCAT+AGG | 0.379357 | 7.3:-24734495 | MS.gene033691:CDS |
| AACAACAACAACAAGATTAA+CGG | 0.429296 | 7.3:-24734559 | MS.gene033691:CDS |
| AGCACACATGGTCTACGCTT+TGG | 0.436188 | 7.3:-24731806 | MS.gene033691:CDS |
| TTGTGATCAAGATGAGTATA+TGG | 0.437591 | 7.3:-24731608 | MS.gene033691:CDS |
| CCTTCCTTCGATTCAAGGAC+AGG | 0.443951 | 7.3:+24732288 | None:intergenic |
| GAACTGTTCATAGGAAGAAA+AGG | 0.451838 | 7.3:-24734486 | MS.gene033691:CDS |
| GTTTATAGGAAATCGATCAT+AGG | 0.469630 | 7.3:-24732526 | MS.gene033691:intron |
| ATATAGATGGTCTTCATGTA+TGG | 0.471743 | 7.3:-24732245 | MS.gene033691:CDS |
| ACAACAACAACAAGATTAAC+GGG | 0.472192 | 7.3:-24734558 | MS.gene033691:CDS |
| TATCTTCGTCGATGATTATG+AGG | 0.472524 | 7.3:-24731560 | MS.gene033691:CDS |
| TCTCTTGATGACTTCTATTG+AGG | 0.486619 | 7.3:-24731367 | None:intergenic |
| ATGTATGGAGTTTCAAGTAC+AGG | 0.489515 | 7.3:-24732230 | MS.gene033691:intron |
| GAGGCGTGTGGTTTCATGGC+AGG | 0.489847 | 7.3:-24734622 | None:intergenic |
| CTCAGCATGAATGATATAGA+TGG | 0.492894 | 7.3:-24732258 | MS.gene033691:CDS |
| ATACTTGTATCATTCATTGC+AGG | 0.501561 | 7.3:+24731508 | None:intergenic |
| CCTTCCTGTCCTTGAATCGA+AGG | 0.505006 | 7.3:-24732292 | MS.gene033691:CDS |
| TAGGAGAATGGTGTTGCCTA+AGG | 0.511895 | 7.3:-24732450 | MS.gene033691:intron |
| TAGGCAACACCATTCTCCTA+AGG | 0.515359 | 7.3:+24732453 | None:intergenic |
| AGATTAACGGGTCGGGTCAA+CGG | 0.518369 | 7.3:-24734546 | MS.gene033691:CDS |
| TGTTAGCTCCCTTAGGAGAA+TGG | 0.536299 | 7.3:-24732462 | MS.gene033691:CDS |
| CAACGGATCCATCATGATCA+TGG | 0.538714 | 7.3:-24734529 | MS.gene033691:CDS |
| CTAGGGTTTGTCAACGTGAA+AGG | 0.540011 | 7.3:-24734586 | MS.gene033691:CDS |
| GGAGACTTTGTTAGCACACA+TGG | 0.544519 | 7.3:-24731818 | MS.gene033691:CDS |
| GCAGGTGTTGAAGATGAACT+AGG | 0.544873 | 7.3:-24734604 | MS.gene033691:CDS |
| CAACTAAACCATGATCATGA+TGG | 0.545398 | 7.3:+24734521 | None:intergenic |
| AACAACAAGATTAACGGGTC+GGG | 0.549708 | 7.3:-24734553 | MS.gene033691:CDS |
| ATAGGAAGAAAAGGATGGCT+AGG | 0.560627 | 7.3:-24734477 | MS.gene033691:CDS |
| CAACAACAAGATTAACGGGT+CGG | 0.560654 | 7.3:-24734554 | MS.gene033691:CDS |
| ACAGTGATGTTAGCTCCCTT+AGG | 0.583324 | 7.3:-24732469 | MS.gene033691:CDS |
| CAGGTGTTGAAGATGAACTA+GGG | 0.583873 | 7.3:-24734603 | MS.gene033691:CDS |
| CCTGTCCTTGAATCGAAGGA+AGG | 0.585425 | 7.3:-24732288 | MS.gene033691:CDS |
| TATAGGAAATCGATCATAGG+AGG | 0.597683 | 7.3:-24732523 | MS.gene033691:intron |
| AGGCAACACCATTCTCCTAA+GGG | 0.607377 | 7.3:+24732454 | None:intergenic |
| CCTTCGATTCAAGGACAGGA+AGG | 0.620428 | 7.3:+24732292 | None:intergenic |
| TGGAGAGATTGGCACGTGCG+AGG | 0.625104 | 7.3:+24734384 | None:intergenic |
| ATGTATGTACTTGAAAACAC+TGG | 0.631186 | 7.3:-24731928 | MS.gene033691:intron |
| TGTTCATAGGAAGAAAAGGA+TGG | 0.632115 | 7.3:-24734482 | MS.gene033691:CDS |
| AAGTGGTGAGTCATTTGAGA+TGG | 0.633283 | 7.3:+24731465 | None:intergenic |
| TAACTTGCAGAAAGCAGCAG+AGG | 0.635910 | 7.3:-24732319 | MS.gene033691:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAATTTATTATATTATA+AGG | + | chr7.3:24733636-24733655 | None:intergenic | 0.0% |
| !! | AAAAAAAAAAAAAAACTTCT+TGG | + | chr7.3:24731934-24731953 | None:intergenic | 10.0% |
| !! | AGTAATAATATGTATAAAAA+TGG | - | chr7.3:24732289-24732308 | MS.gene033691:CDS | 10.0% |
| !!! | TTAAAATATTTGATGATTAT+TGG | - | chr7.3:24733118-24733137 | MS.gene033691:intron | 10.0% |
| !!! | TTTTTATACATATTATTACT+TGG | + | chr7.3:24732289-24732308 | None:intergenic | 10.0% |
| !! | AAAATCTATACAATTAACAT+CGG | + | chr7.3:24731813-24731832 | None:intergenic | 15.0% |
| !! | AAATTAGTTAATACCATAAA+TGG | - | chr7.3:24733408-24733427 | MS.gene033691:intron | 15.0% |
| !! | AAATTTAATGCAATTACATT+CGG | - | chr7.3:24733827-24733846 | MS.gene033691:intron | 15.0% |
| !! | ATATGTATAAAAATGGAAAA+AGG | - | chr7.3:24732296-24732315 | MS.gene033691:CDS | 15.0% |
| !! | ATTATATTATAAGGTTATGA+TGG | + | chr7.3:24733627-24733646 | None:intergenic | 15.0% |
| !! | TGTTAATTAATACTATTCAT+CGG | - | chr7.3:24732459-24732478 | MS.gene033691:CDS | 15.0% |
| !! | TGTTGGATATAAATATAATA+TGG | - | chr7.3:24733262-24733281 | MS.gene033691:intron | 15.0% |
| !!! | AATTACGAAAGTTAATTTTA+CGG | - | chr7.3:24732854-24732873 | MS.gene033691:intron | 15.0% |
| !!! | TGAATGAATAAACATTATTT+TGG | + | chr7.3:24732401-24732420 | None:intergenic | 15.0% |
| !!! | TTAGTTTGTTAAATATTTTC+AGG | - | chr7.3:24734137-24734156 | MS.gene033691:intron | 15.0% |
| !! | AATTGCATTAAATTTCATTC+TGG | + | chr7.3:24733822-24733841 | None:intergenic | 20.0% |
| !! | ATAATTAAATAAAAGGGAAG+TGG | - | chr7.3:24732152-24732171 | MS.gene033691:intron | 20.0% |
| !! | CAATTCAAAAGATTAATCTT+TGG | + | chr7.3:24731993-24732012 | None:intergenic | 20.0% |
| !! | TTAACTATATCAATGTGTAT+AGG | - | chr7.3:24732545-24732564 | MS.gene033691:intron | 20.0% |
| !!! | AAATATTTGATGATTATTGG+TGG | - | chr7.3:24733121-24733140 | MS.gene033691:intron | 20.0% |
| !!! | AAGTAATGCTTATAGAATTT+TGG | - | chr7.3:24732504-24732523 | MS.gene033691:CDS | 20.0% |
| !!! | AATTGTACTTTAAAGTCATT+TGG | - | chr7.3:24733931-24733950 | MS.gene033691:intron | 20.0% |
| !!! | AATTGTGATTTTGATTATCT+TGG | + | chr7.3:24734214-24734233 | None:intergenic | 20.0% |
| !!! | ACAATTTTCATTCTGTTTAT+AGG | - | chr7.3:24733436-24733455 | MS.gene033691:intron | 20.0% |
| !!! | ATTACGAAAGTTAATTTTAC+GGG | - | chr7.3:24732855-24732874 | MS.gene033691:intron | 20.0% |
| !!! | ATTGTACTTTAAAGTCATTT+GGG | - | chr7.3:24733932-24733951 | MS.gene033691:intron | 20.0% |
| !!! | CAAAGATTAATCTTTTGAAT+TGG | - | chr7.3:24731991-24732010 | MS.gene033691:intron | 20.0% |
| ! | AAACAGAATGAAAATTGTCA+AGG | + | chr7.3:24733434-24733453 | None:intergenic | 25.0% |
| ! | AACAACAACAACAAGATTAA+CGG | - | chr7.3:24731417-24731436 | MS.gene033691:CDS | 25.0% |
| ! | AATTCAGAAGTCAATTTCAT+AGG | - | chr7.3:24732691-24732710 | MS.gene033691:intron | 25.0% |
| ! | ACATAAATTCCCAAATGTAA+AGG | + | chr7.3:24733156-24733175 | None:intergenic | 25.0% |
| ! | ATAAAAATGGAAAAAGGAAG+AGG | - | chr7.3:24732302-24732321 | MS.gene033691:CDS | 25.0% |
| ! | ATAGTTAAACCAAAAAGACA+AGG | + | chr7.3:24732533-24732552 | None:intergenic | 25.0% |
| ! | ATTATCTTGGTAAACCATAA+TGG | + | chr7.3:24734201-24734220 | None:intergenic | 25.0% |
| ! | TAAATAGAGCCTTTACATTT+GGG | - | chr7.3:24733144-24733163 | MS.gene033691:intron | 25.0% |
| ! | TACTAGTAGTTTGATCTTAA+TGG | - | chr7.3:24731871-24731890 | MS.gene033691:intron | 25.0% |
| ! | TACTCAATTGTCTATTCTAT+GGG | - | chr7.3:24732569-24732588 | MS.gene033691:intron | 25.0% |
| ! | TGACAGGAAAAAAAAATACA+TGG | + | chr7.3:24734313-24734332 | None:intergenic | 25.0% |
| ! | TTACTCAATTGTCTATTCTA+TGG | - | chr7.3:24732568-24732587 | MS.gene033691:intron | 25.0% |
| !! | TATTTCTATTTCAATACTGC+AGG | - | chr7.3:24734001-24734020 | MS.gene033691:intron | 25.0% |
| !! | TTATCTTCATTTTCTTGTGT+GGG | + | chr7.3:24732099-24732118 | None:intergenic | 25.0% |
| !! | TTTATCTTCATTTTCTTGTG+TGG | + | chr7.3:24732100-24732119 | None:intergenic | 25.0% |
| !! | TTTTTATTATCTGTCCTAGT+TGG | - | chr7.3:24731707-24731726 | MS.gene033691:intron | 25.0% |
| !!! | ATTTCGAAAGTCGATTTTAT+TGG | - | chr7.3:24732789-24732808 | MS.gene033691:intron | 25.0% |
| !!! | ATTTTTGAGATGAATAGTGA+TGG | + | chr7.3:24731547-24731566 | None:intergenic | 25.0% |
| AAAATTGTCAAGGCCATTTA+TGG | + | chr7.3:24733424-24733443 | None:intergenic | 30.0% | |
| ACAACAACAACAAGATTAAC+GGG | - | chr7.3:24731418-24731437 | MS.gene033691:CDS | 30.0% | |
| AGCAAAGTTTAACTCTCAAA+TGG | + | chr7.3:24734107-24734126 | None:intergenic | 30.0% | |
| AGTAAATGCTGCAAAAAGTT+GGG | + | chr7.3:24733355-24733374 | None:intergenic | 30.0% | |
| ATACTTGTATCATTCATTGC+AGG | + | chr7.3:24734471-24734490 | None:intergenic | 30.0% | |
| ATATAGATGGTCTTCATGTA+TGG | - | chr7.3:24733731-24733750 | MS.gene033691:intron | 30.0% | |
| ATGACCAATTACTCAAGAAT+TGG | - | chr7.3:24734552-24734571 | MS.gene033691:CDS | 30.0% | |
| ATGTATGTACTTGAAAACAC+TGG | - | chr7.3:24734048-24734067 | MS.gene033691:intron | 30.0% | |
| ATTGGATCAGTTGAAACATT+TGG | - | chr7.3:24734570-24734589 | MS.gene033691:CDS | 30.0% | |
| GAAATGAAGTCTATAAGCAA+AGG | + | chr7.3:24733557-24733576 | None:intergenic | 30.0% | |
| GGTCAACTATATCATGTATA+CGG | - | chr7.3:24732712-24732731 | MS.gene033691:intron | 30.0% | |
| GTAAATAGAGCCTTTACATT+TGG | - | chr7.3:24733143-24733162 | MS.gene033691:intron | 30.0% | |
| GTATTTCAAGATAAGCCATA+AGG | - | chr7.3:24733174-24733193 | MS.gene033691:intron | 30.0% | |
| GTCAATCATTCTTTATCTGA+CGG | + | chr7.3:24733901-24733920 | None:intergenic | 30.0% | |
| GTTTATAGGAAATCGATCAT+AGG | - | chr7.3:24733450-24733469 | MS.gene033691:intron | 30.0% | |
| TACATTCGACTGTTATTGTT+AGG | + | chr7.3:24734033-24734052 | None:intergenic | 30.0% | |
| TAGTAAATGCTGCAAAAAGT+TGG | + | chr7.3:24733356-24733375 | None:intergenic | 30.0% | |
| TGATCCAATTCTTGAGTAAT+TGG | + | chr7.3:24734559-24734578 | None:intergenic | 30.0% | |
| TTGTGATCAAGATGAGTATA+TGG | - | chr7.3:24734368-24734387 | MS.gene033691:intron | 30.0% | |
| ! | AAGTTAATTTTACGGGTCAA+CGG | - | chr7.3:24732862-24732881 | MS.gene033691:intron | 30.0% |
| ! | AAGTTTTTGCAAATCCAACT+AGG | + | chr7.3:24731724-24731743 | None:intergenic | 30.0% |
| ! | TATTTCAATACTGCAGGTTT+TGG | - | chr7.3:24734007-24734026 | MS.gene033691:intron | 30.0% |
| !! | ATTTCGGAAGTCGATTTTAT+GGG | - | chr7.3:24732740-24732759 | MS.gene033691:intron | 30.0% |
| !! | CTACTCATTTTAGAAGTCAA+CGG | - | chr7.3:24732612-24732631 | MS.gene033691:intron | 30.0% |
| !! | TTTTAACTCTTTGCTAGAAG+AGG | - | chr7.3:24732326-24732345 | MS.gene033691:intron | 30.0% |
| AAAAAAAAACTCACACGTGC+GGG | + | chr7.3:24731645-24731664 | None:intergenic | 35.0% | |
| AAACTTCTTGGCACAATTCT+TGG | + | chr7.3:24731922-24731941 | None:intergenic | 35.0% | |
| AAGAACTTCGTCATCTATTG+TGG | + | chr7.3:24732023-24732042 | None:intergenic | 35.0% | |
| AGATTTAGGGAACCAAAAGT+AGG | + | chr7.3:24733083-24733102 | None:intergenic | 35.0% | |
| ATAAAAGGGAAGTGGATGTA+TGG | - | chr7.3:24732160-24732179 | MS.gene033691:intron | 35.0% | |
| ATCGAGTCGATCTAAGTTAT+TGG | + | chr7.3:24732985-24733004 | None:intergenic | 35.0% | |
| CAACTAAACCATGATCATGA+TGG | + | chr7.3:24731458-24731477 | None:intergenic | 35.0% | |
| CACGTATATGCTACTCATTT+CGG | - | chr7.3:24732638-24732657 | MS.gene033691:intron | 35.0% | |
| CTCAGCATGAATGATATAGA+TGG | - | chr7.3:24733718-24733737 | MS.gene033691:intron | 35.0% | |
| GAAAAAAAAACTCACACGTG+CGG | + | chr7.3:24731646-24731665 | None:intergenic | 35.0% | |
| GAACTGTTCATAGGAAGAAA+AGG | - | chr7.3:24731490-24731509 | MS.gene033691:CDS | 35.0% | |
| GAATGAAAAAGAGGTGGAAT+TGG | + | chr7.3:24731615-24731634 | None:intergenic | 35.0% | |
| GGGTGTGTATAAATTAGTGT+AGG | + | chr7.3:24732079-24732098 | None:intergenic | 35.0% | |
| GTAGTAGTAGTAGTAGAAGA+AGG | + | chr7.3:24731573-24731592 | None:intergenic | 35.0% | |
| TAAAAGGGAAGTGGATGTAT+GGG | - | chr7.3:24732161-24732180 | MS.gene033691:intron | 35.0% | |
| TATAGGAAATCGATCATAGG+AGG | - | chr7.3:24733453-24733472 | MS.gene033691:intron | 35.0% | |
| TATATGCTACTCATTTCGGA+AGG | - | chr7.3:24732642-24732661 | MS.gene033691:intron | 35.0% | |
| TATCTTCGTCGATGATTATG+AGG | - | chr7.3:24734416-24734435 | MS.gene033691:CDS | 35.0% | |
| TCTCGATCGTTTATAGAGAT+CGG | - | chr7.3:24732901-24732920 | MS.gene033691:intron | 35.0% | |
| TGCATTACTACAGGTAATTC+AGG | - | chr7.3:24734335-24734354 | MS.gene033691:intron | 35.0% | |
| TGTTCATAGGAAGAAAAGGA+TGG | - | chr7.3:24731494-24731513 | MS.gene033691:CDS | 35.0% | |
| TTTACTCGATGCTCTTATGT+TGG | - | chr7.3:24733245-24733264 | MS.gene033691:intron | 35.0% | |
| ! | AAGCTGAAAACTCCTACTTT+TGG | - | chr7.3:24733068-24733087 | MS.gene033691:intron | 35.0% |
| ! | ATGTATGGAGTTTCAAGTAC+AGG | - | chr7.3:24733746-24733765 | MS.gene033691:intron | 35.0% |
| ! | GTTGAGATTCCTTTTCCAAA+AGG | - | chr7.3:24733475-24733494 | MS.gene033691:intron | 35.0% |
| !! | CAACGGTGTTAAGTCATTTT+AGG | + | chr7.3:24732046-24732065 | None:intergenic | 35.0% |
| !! | CATTTCGGAAGTCGATTTTA+TGG | - | chr7.3:24732739-24732758 | MS.gene033691:intron | 35.0% |
| !! | TCTTCAACTCCTTTTGGAAA+AGG | + | chr7.3:24733487-24733506 | None:intergenic | 35.0% |
| !! | TTTTGGTGACCTTGTCTTTT+TGG | - | chr7.3:24732521-24732540 | MS.gene033691:CDS | 35.0% |
| !!! | CTTTTGGTTCCCTAAATCTT+TGG | - | chr7.3:24733084-24733103 | MS.gene033691:intron | 35.0% |
| !!! | GACTCACCACTTGATTTTTT+GGG | - | chr7.3:24734522-24734541 | MS.gene033691:CDS | 35.0% |
| !!! | TGACTCACCACTTGATTTTT+TGG | - | chr7.3:24734521-24734540 | MS.gene033691:CDS | 35.0% |
| AAAGAGTAACGGTGGTAAAG+AGG | + | chr7.3:24733228-24733247 | None:intergenic | 40.0% | |
| AAGTGGTGAGTCATTTGAGA+TGG | + | chr7.3:24734514-24734533 | None:intergenic | 40.0% | |
| ACACCACCACCAAAGATTTA+GGG | + | chr7.3:24733096-24733115 | None:intergenic | 40.0% | |
| AGGCAGAATCTATGTCTGTA+CGG | - | chr7.3:24732346-24732365 | MS.gene033691:intron | 40.0% | |
| ATAAGCAAAGGTCAGACCTT+AGG | + | chr7.3:24733545-24733564 | None:intergenic | 40.0% | |
| ATAGGAAGAAAAGGATGGCT+AGG | - | chr7.3:24731499-24731518 | MS.gene033691:CDS | 40.0% | |
| CATGTATACGGCACTCATTT+CGG | - | chr7.3:24732724-24732743 | MS.gene033691:intron | 40.0% | |
| CCTGTAGTAATGCATATGAC+AGG | + | chr7.3:24734329-24734348 | None:intergenic | 40.0% | |
| CCTGTCATATGCATTACTAC+AGG | - | chr7.3:24734326-24734345 | MS.gene033691:intron | 40.0% | |
| CTTAGTCAATGTCTAGTCCT+TGG | - | chr7.3:24733045-24733064 | MS.gene033691:intron | 40.0% | |
| CTTTCGCAAATTGGGAAGTT+AGG | + | chr7.3:24732938-24732957 | None:intergenic | 40.0% | |
| GAATTCCTTCCTTCGATTCA+AGG | + | chr7.3:24733696-24733715 | None:intergenic | 40.0% | |
| GATCCACCCAAAAAATCAAG+TGG | + | chr7.3:24734531-24734550 | None:intergenic | 40.0% | |
| GTGTAGGTCTGAGAATACAA+CGG | + | chr7.3:24732063-24732082 | None:intergenic | 40.0% | |
| TCACGTGACTTTCGCAAATT+GGG | + | chr7.3:24732946-24732965 | None:intergenic | 40.0% | |
| TGTACAGTCACACACTTACA+CGG | - | chr7.3:24733862-24733881 | MS.gene033691:intron | 40.0% | |
| TTGGTTCCCTAAATCTTTGG+TGG | - | chr7.3:24733087-24733106 | MS.gene033691:intron | 40.0% | |
| ! | AACAACAAGATTAACGGGTC+GGG | - | chr7.3:24731423-24731442 | MS.gene033691:CDS | 40.0% |
| ! | CAACAACAAGATTAACGGGT+CGG | - | chr7.3:24731422-24731441 | MS.gene033691:CDS | 40.0% |
| ! | CACTGTTCTTCAACTCCTTT+TGG | + | chr7.3:24733493-24733512 | None:intergenic | 40.0% |
| ! | CTGCATTTGGAACTGTTCAT+AGG | - | chr7.3:24731481-24731500 | MS.gene033691:CDS | 40.0% |
| !! | CAGGTGTTGAAGATGAACTA+GGG | - | chr7.3:24731373-24731392 | MS.gene033691:CDS | 40.0% |
| !! | GAGCATCGAGTAAAGAGTAA+CGG | + | chr7.3:24733239-24733258 | None:intergenic | 40.0% |
| !!! | ATTATTTTGGTCATTGCCCG+TGG | + | chr7.3:24732388-24732407 | None:intergenic | 40.0% |
| !!! | TCACCACTTGATTTTTTGGG+TGG | - | chr7.3:24734525-24734544 | MS.gene033691:CDS | 40.0% |
| ACAGTGATGTTAGCTCCCTT+AGG | - | chr7.3:24733507-24733526 | MS.gene033691:intron | 45.0% | |
| AGAGGTGGAATTGGAGAGAT+TGG | + | chr7.3:24731606-24731625 | None:intergenic | 45.0% | |
| AGGCAACACCATTCTCCTAA+GGG | + | chr7.3:24733525-24733544 | None:intergenic | 45.0% | |
| AGGCATGCTAGACAATGCTT+TGG | - | chr7.3:24733194-24733213 | MS.gene033691:intron | 45.0% | |
| CAACGGATCCATCATGATCA+TGG | - | chr7.3:24731447-24731466 | MS.gene033691:CDS | 45.0% | |
| CACACCACCACCAAAGATTT+AGG | + | chr7.3:24733097-24733116 | None:intergenic | 45.0% | |
| CATCGAGTAAAGAGTAACGG+TGG | + | chr7.3:24733236-24733255 | None:intergenic | 45.0% | |
| CTAGGGTTTGTCAACGTGAA+AGG | - | chr7.3:24731390-24731409 | MS.gene033691:CDS | 45.0% | |
| CTCACGTGACTTTCGCAAAT+TGG | + | chr7.3:24732947-24732966 | None:intergenic | 45.0% | |
| CTGCTGTGTGCATACATTGT+TGG | - | chr7.3:24733770-24733789 | MS.gene033691:intron | 45.0% | |
| GCATTGTCTAGCATGCCTTA+TGG | + | chr7.3:24733192-24733211 | None:intergenic | 45.0% | |
| GGAGACTTTGTTAGCACACA+TGG | - | chr7.3:24734158-24734177 | MS.gene033691:intron | 45.0% | |
| GGAGGGAGAGAATGAAAAAG+AGG | + | chr7.3:24731624-24731643 | None:intergenic | 45.0% | |
| GGCATGCTAGACAATGCTTT+GGG | - | chr7.3:24733195-24733214 | MS.gene033691:intron | 45.0% | |
| GGGAGAGAATGAAAAAGAGG+TGG | + | chr7.3:24731621-24731640 | None:intergenic | 45.0% | |
| GGTTTAGTTGCTGCTGCATT+TGG | - | chr7.3:24731468-24731487 | MS.gene033691:CDS | 45.0% | |
| GTTCCCTAAATCTTTGGTGG+TGG | - | chr7.3:24733090-24733109 | MS.gene033691:intron | 45.0% | |
| TAGGCAACACCATTCTCCTA+AGG | + | chr7.3:24733526-24733545 | None:intergenic | 45.0% | |
| TGTTAGCTCCCTTAGGAGAA+TGG | - | chr7.3:24733514-24733533 | MS.gene033691:intron | 45.0% | |
| ! | GTAGGAGTTTTCAGCTTCCA+AGG | + | chr7.3:24733065-24733084 | None:intergenic | 45.0% |
| ! | TAACTTGCAGAAAGCAGCAG+AGG | - | chr7.3:24733657-24733676 | MS.gene033691:intron | 45.0% |
| !! | ACGCTTTGGAGACTCCATTA+TGG | - | chr7.3:24734184-24734203 | MS.gene033691:intron | 45.0% |
| !! | CTAAATCTTTGGTGGTGGTG+TGG | - | chr7.3:24733095-24733114 | MS.gene033691:intron | 45.0% |
| !! | GCAGGTGTTGAAGATGAACT+AGG | - | chr7.3:24731372-24731391 | MS.gene033691:CDS | 45.0% |
| !! | TAGGAGAATGGTGTTGCCTA+AGG | - | chr7.3:24733526-24733545 | MS.gene033691:intron | 45.0% |
| !! | AAATACAATAATTAAATAAA+AGG | - | chr7.3:24732145-24732164 | MS.gene033691:intron | 5.0% |
| !! | AATACAATAATTAAATAAAA+GGG | - | chr7.3:24732146-24732165 | MS.gene033691:intron | 5.0% |
| AAAAAACTCACACGTGCGGG+AGG | + | chr7.3:24731642-24731661 | None:intergenic | 50.0% | |
| AAAAACTCACACGTGCGGGA+GGG | + | chr7.3:24731641-24731660 | None:intergenic | 50.0% | |
| AATTTGCCTCGTGGATCCAC+GGG | - | chr7.3:24732369-24732388 | MS.gene033691:intron | 50.0% | |
| AGCACACATGGTCTACGCTT+TGG | - | chr7.3:24734170-24734189 | MS.gene033691:intron | 50.0% | |
| CCTGTCCTTGAATCGAAGGA+AGG | - | chr7.3:24733688-24733707 | MS.gene033691:intron | 50.0% | |
| CCTTCCTGTCCTTGAATCGA+AGG | - | chr7.3:24733684-24733703 | MS.gene033691:intron | 50.0% | |
| CCTTCCTTCGATTCAAGGAC+AGG | + | chr7.3:24733691-24733710 | None:intergenic | 50.0% | |
| CCTTCGATTCAAGGACAGGA+AGG | + | chr7.3:24733687-24733706 | None:intergenic | 50.0% | |
| GAATTTGCCTCGTGGATCCA+CGG | - | chr7.3:24732368-24732387 | MS.gene033691:intron | 50.0% | |
| TCTGTACGGAATTTGCCTCG+TGG | - | chr7.3:24732360-24732379 | MS.gene033691:intron | 50.0% | |
| ! | AGATTAACGGGTCGGGTCAA+CGG | - | chr7.3:24731430-24731449 | MS.gene033691:CDS | 50.0% |
| TCATTGCCCGTGGATCCACG+AGG | + | chr7.3:24732378-24732397 | None:intergenic | 60.0% | |
| TGGAGAGATTGGCACGTGCG+AGG | + | chr7.3:24731595-24731614 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 24731369 | 24734629 | 24731369 | ID=MS.gene033691 |
| chr7.3 | mRNA | 24731369 | 24734629 | 24731369 | ID=MS.gene033691.t1;Parent=MS.gene033691 |
| chr7.3 | exon | 24734399 | 24734629 | 24734399 | ID=MS.gene033691.t1.exon1;Parent=MS.gene033691.t1 |
| chr7.3 | CDS | 24734399 | 24734629 | 24734399 | ID=cds.MS.gene033691.t1;Parent=MS.gene033691.t1 |
| chr7.3 | exon | 24732451 | 24732540 | 24732451 | ID=MS.gene033691.t1.exon2;Parent=MS.gene033691.t1 |
| chr7.3 | CDS | 24732451 | 24732540 | 24732451 | ID=cds.MS.gene033691.t1;Parent=MS.gene033691.t1 |
| chr7.3 | exon | 24732231 | 24732331 | 24732231 | ID=MS.gene033691.t1.exon3;Parent=MS.gene033691.t1 |
| chr7.3 | CDS | 24732231 | 24732331 | 24732231 | ID=cds.MS.gene033691.t1;Parent=MS.gene033691.t1 |
| chr7.3 | exon | 24731929 | 24731975 | 24731929 | ID=MS.gene033691.t1.exon4;Parent=MS.gene033691.t1 |
| chr7.3 | CDS | 24731929 | 24731975 | 24731929 | ID=cds.MS.gene033691.t1;Parent=MS.gene033691.t1 |
| chr7.3 | exon | 24731763 | 24731839 | 24731763 | ID=MS.gene033691.t1.exon5;Parent=MS.gene033691.t1 |
| chr7.3 | CDS | 24731763 | 24731839 | 24731763 | ID=cds.MS.gene033691.t1;Parent=MS.gene033691.t1 |
| chr7.3 | exon | 24731369 | 24731650 | 24731369 | ID=MS.gene033691.t1.exon6;Parent=MS.gene033691.t1 |
| chr7.3 | CDS | 24731369 | 24731650 | 24731369 | ID=cds.MS.gene033691.t1;Parent=MS.gene033691.t1 |
| Gene Sequence |
| Protein sequence |
