AlfalfaGEDB | MS.gene033704

M. sativa cultivar XinJiangDaYe / MS.gene033704

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515 GO:0046983
PFAM: PF00010.29

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene033704.t1	GAU24683.1	78.7	502	76	11	1	481	1	492	1.10E-138	503.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene033704.t1	Q9LSE2	79.1	225	44	2	259	483	272	493	8.1e-93	342.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene033704.t1	A0A2Z6M3F1	78.7	502	76	11	1	481	1	492	8.2e-139	503.4

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene033704.t1	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene033704.t1	MTR_7g083900	97.113	485	3	6	1	484	1	475	0.0	942
MS.gene033704.t1	MTR_7g083900	96.914	486	3	7	1	484	1	476	0.0	938
MS.gene033704.t1	MTR_3g498695	46.809	517	177	17	21	483	12	484	2.00e-123	369
MS.gene033704.t1	MTR_3g498695	46.615	517	177	18	21	483	12	483	6.01e-121	363
MS.gene033704.t1	MTR_3g030700	50.368	272	114	5	222	481	113	375	3.93e-72	233
MS.gene033704.t1	MTR_2g081040	57.143	189	79	1	293	481	175	361	1.03e-66	219
MS.gene033704.t1	MTR_3g104100	54.187	203	91	1	279	481	179	379	8.79e-64	211
MS.gene033704.t1	MTR_3g111290	44.898	196	80	5	288	482	166	334	7.74e-39	144
MS.gene033704.t1	MTR_5g030770	44.878	205	85	5	283	482	141	322	3.57e-37	139
MS.gene033704.t1	MTR_5g030770	44.390	205	80	5	283	482	141	316	3.10e-35	134

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene033704.t1	AT3G26744	56.041	389	138	10	120	483	113	493	7.89e-118	355
MS.gene033704.t1	AT3G26744	56.041	389	138	10	120	483	113	493	7.89e-118	355
MS.gene033704.t1	AT3G26744	56.041	389	138	10	120	483	113	493	7.89e-118	355
MS.gene033704.t1	AT1G12860	57.377	366	109	10	129	483	120	449	4.17e-112	339
MS.gene033704.t1	AT3G26744	55.096	363	130	10	120	457	113	467	2.11e-101	312
MS.gene033704.t1	AT1G12860	56.119	335	110	10	129	457	120	423	2.17e-95	295
MS.gene033704.t1	AT5G65640	43.689	206	95	4	281	482	160	348	1.16e-36	139
MS.gene033704.t1	AT5G10570	43.655	197	81	4	288	482	144	312	1.43e-32	126
MS.gene033704.t1	AT2G16910	40.102	197	99	6	294	476	313	504	5.66e-31	126
MS.gene033704.t1	AT5G65640	68.919	74	19	1	281	350	160	233	2.13e-20	91.7

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Find 138 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAAGAATCACCTTCTTCA+TGG	0.390694	7.1:-21127650	MS.gene033704:CDS
AAGGTTATCCAAAGCCCTCA+TGG	0.562752	7.1:+21125670	None:intergenic
AATCTATGGTGTTTGTGTTT+TGG	0.283895	7.1:+21127424	None:intergenic
AATGATTTGAATAATTCAAA+TGG	0.403338	7.1:-21126925	MS.gene033704:CDS
AATGGGACTGTTGTTACTGG+TGG	0.595592	7.1:-21126907	MS.gene033704:CDS
AATTATGATTCTGATGAGAA+TGG	0.474232	7.1:-21126949	MS.gene033704:CDS
ACAAAACATATGAATGTTGA+CGG	0.497241	7.1:+21125721	None:intergenic
ACAGGGAAGAGTCGGTGGAG+TGG	0.614037	7.1:+21126039	None:intergenic
ACAGGTGGAAGTTAGAGTAA+GGG	0.540261	7.1:-21125753	MS.gene033704:intron
ACCAATAACCCATTTGAAAT+GGG	0.328953	7.1:-21127339	MS.gene033704:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATAGAACGTGCTAATGTT+AGG	-	chr7.1:21126811-21126830	MS.gene033704:CDS	30.0%
AAGGCAAACAAAAATTACCT+TGG	+	chr7.1:21127092-21127111	None:intergenic	30.0%
AATTATTTGGACGGTAATTG+AGG	-	chr7.1:21127242-21127261	MS.gene033704:CDS	30.0%
ACATGGCAAATAACTGAATA+AGG	-	chr7.1:21127206-21127225	MS.gene033704:CDS	30.0%
AGGCAAACAAAAATTACCTT+GGG	+	chr7.1:21127091-21127110	None:intergenic	30.0%
ATAATACTCTCACTATACCT+TGG	-	chr7.1:21125358-21125377	MS.gene033704:CDS	30.0%
ATGAGAAAATTGTCTGGTAA+GGG	+	chr7.1:21125603-21125622	None:intergenic	30.0%
ATGATAGGTTGTATATGCTT+AGG	-	chr7.1:21126240-21126259	MS.gene033704:intron	30.0%
CACAAAAAACAACCTAAAAG+AGG	+	chr7.1:21127571-21127590	None:intergenic	30.0%
CATGGCAAATAACTGAATAA+GGG	-	chr7.1:21127207-21127226	MS.gene033704:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.1	gene	21125318	21127754	21125318	ID=MS.gene033704
chr7.1	mRNA	21125318	21127754	21125318	ID=MS.gene033704.t1;Parent=MS.gene033704
chr7.1	exon	21126786	21127754	21126786	ID=MS.gene033704.t1.exon1;Parent=MS.gene033704.t1
chr7.1	CDS	21126786	21127754	21126786	ID=cds.MS.gene033704.t1;Parent=MS.gene033704.t1
chr7.1	exon	21125979	21126209	21125979	ID=MS.gene033704.t1.exon2;Parent=MS.gene033704.t1
chr7.1	CDS	21125979	21126209	21125979	ID=cds.MS.gene033704.t1;Parent=MS.gene033704.t1
chr7.1	exon	21125601	21125771	21125601	ID=MS.gene033704.t1.exon3;Parent=MS.gene033704.t1
chr7.1	CDS	21125601	21125771	21125601	ID=cds.MS.gene033704.t1;Parent=MS.gene033704.t1
chr7.1	exon	21125318	21125401	21125318	ID=MS.gene033704.t1.exon4;Parent=MS.gene033704.t1
chr7.1	CDS	21125318	21125401	21125318	ID=cds.MS.gene033704.t1;Parent=MS.gene033704.t1

Gene Sequence

>MS.gene033704

ATGGAGAGATACACGTTACCCTTACCACCTCAACAAGTTCATAATACTCTCACTATACCTTGGACTGAACCACAACAACAACAACAAGAATCACCTTCTTCATGGTCCACACCTAACTCCGAACCTAAACACAACAACCACGAACAAGACATTGCAATAGCTATTGCTATGGCTGGTTCTTCTATCCCTTTCTTCAAACCCGAACCACAACCCGAACCTGATAACAACAACAACAACTTCTACAACAACAACAACAACGTTGTTAATGTTAATAATGTTATTCCCTTACCAGACAATTTTCTCATGCACCAAAACACAAACACCATAGATTCAATTTCAAATCCACACTCTTTCTTTCACAACAATAACAACTACTTCTTCAACAACAATAATACCAATAACCCATTTGAAATGGGGTTTGAAAATGGATTCTTTATGGGAAACAACAACACTTCAAATTCCCCTGTTTTCATGGGTGGGTCCCTTTCAGCTTCTGAGTTTCCTCCGAGTCTTGAACTCGATGCTGCTCCAGTACCACCTTTCAGTGCTTCGTTTTCTATGCCTCTTGAGCTAGCTCAACCACAACCACAACAACATCATCATCATCATCAGCAACAACAACAACAACAACCCACGACGCTGTTTCAGAAGCGTCGTGGGGCGTTGGAGATTCCGAGGTTGGAGACCGTGGGGAACAAGAAGAAGAGAAAGGTGGAGAAGAGCTGGGAAGAAGAAGGAAGTGGTGGTGGTGGTGGTGATGATGTTGATGATTTTTCTGAGTTGAATTATGATTCTGATGAGAATGGGAATGATTTGAATAATTCAAATGGGACTGTTGTTACTGGTGGAGATCAGAAGGGGAAGAAGAAGGGGCTTCCTGCAAAGAATTTGATGGCTGAGAGGCGCCGGAGGAAGAAACTCAATGATAGGTTGTATATGCTTAGGTCTGTTGTGCCTAAAATTAGCAAGGTATATGGTAGAGATTTATTTACAAAATATTGTGAAATTGGATCCTTTTAGAAAAAATATTTGATGCATATTTATATTAACTTCCATTAATGTTTTAAATTGCGGTCGCAGTAATGGATTGTGATTCTTGATATTGCAAAAAATTGTTGTCAAATGCGGTTGATGTAGCCTTAATCGCGGTCACATAAAAATAAAAATCTTATCTTGATGTCTCATGTCTTTAGACAGAATCAATGTCTCCTATAATTAGAAATGCCATTGAATAAATAGTAAAATTAGTTTTTTTTCCTTCAAAAAACATAACATTTTTGTAGTCCTTGATTTGAATAATAGAAATCATGAAGGGAATTTTATTTATCAAACTAGTTTTTTGTATTTTGTTGGTCTAATTAGTCCTTGAAATGCTTGTGTGATGCCATCTTGTTGCTTTTGTAATTTTGTTTGGGGAATCTAGTGTTTGGGAATGTTGTTGCTTATGTTATTGGCAAGTGTTGCATTTGCTTTGTGTTAATTAACAACTTAGAAAATAGAACGTGCTAATGTTAGGTATTTTCATAAATTTCATTTATTTTATAGATGGACAGGGCTTCAATACTCGGAGATGCAGTTGACTACTTGAAGGAGCTGCTGCAGCGGATTAATAATCTTCATAATGAACTGGAATCAACTCCACCTGGCTCACTGCTGCAACCTTCTGCAAGTGCAAGCTTTCACCCGTTGACACCCACTCCACCGACTCTTCCCTGTCGAGTCAAAGAGGATCTATATCCCGGTGACTTGCTAAGCCCCAAAAACCAATCTCCCAAGGTAATTTTTGTTTGCCTTAATGCGAAGTTGTTTTAAGATACTGTCAGAATTGTAGTTTGTTGCTTGCAAACCATGCAAATTATTGTCACAAACGCCTTTATCTATACCAGTAACATGGCAAATAACTGAATAAGGGTACGTTGATGCAAATTATTTGGACGGTAATTGAGGAAATTGTTTAAACTTTCTTGTTTCTGAAATTTACAGGTGGAAGTTAGAGTAAGGGAAGGGAGAGCCGTCAACATTCATATGTTTTGTACTCGCAGACCAGGACTTTTGCTATCTACCATGAGGGCTTTGGATAACCTTGGATTGGATGTTCAGCAGGCTGTTATCAGTTGTTTCAATGGCTTTGCATTAGACGTGTTCAGAGCTGAGGTATTAGTTCTTTCTCCGGTTGCAAGCTTCACTCAAACATATCCATCATAAACCTTTCTTACATTTTACTGTATGCTTGCAATTGATGTTTATATGCCTCTTTTAGGTTGTTTTTTGTGAAGTATTTTGAGTTTAAATATTTCGAGTTCACTAATTATTGGATTTCTGGTGTTGATTTAGTCTTTTTGTTTCTTAGCAGCAATGCAGAGAAGGCCAGGATGTACTCCCCGAGCAAATTAAAGCAGTGCTGTTGGATTCAGCGGGCTACCATGGTTTGAATTGA

Protein sequence

>MS.gene033704.t1

MERYTLPLPPQQVHNTLTIPWTEPQQQQQESPSSWSTPNSEPKHNNHEQDIAIAIAMAGSSIPFFKPEPQPEPDNNNNNFYNNNNNVVNVNNVIPLPDNFLMHQNTNTIDSISNPHSFFHNNNNYFFNNNNTNNPFEMGFENGFFMGNNNTSNSPVFMGGSLSASEFPPSLELDAAPVPPFSASFSMPLELAQPQPQQHHHHHQQQQQQQPTTLFQKRRGALEIPRLETVGNKKKRKVEKSWEEEGSGGGGGDDVDDFSELNYDSDENGNDLNNSNGTVVTGGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAVDYLKELLQRINNLHNELESTPPGSLLQPSASASFHPLTPTPPTLPCRVKEDLYPGDLLSPKNQSPKVEVRVREGRAVNIHMFCTRRPGLLLSTMRALDNLGLDVQQAVISCFNGFALDVFRAEQCREGQDVLPEQIKAVLLDSAGYHGLN