Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033722.t1 | XP_003624511.2 | 99.5 | 198 | 1 | 0 | 1 | 198 | 23 | 220 | 7.70E-110 | 406.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033722.t1 | O80438 | 86.8 | 159 | 21 | 0 | 13 | 171 | 8 | 166 | 7.9e-79 | 294.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033722.t1 | G7KXA5 | 99.5 | 198 | 1 | 0 | 1 | 198 | 1 | 198 | 5.6e-110 | 406.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene033722.t1 | TR | GNAT |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033722.t1 | MTR_7g084140 | 99.495 | 198 | 1 | 0 | 1 | 198 | 1 | 198 | 1.33e-147 | 408 |
| MS.gene033722.t1 | MTR_3g034200 | 32.117 | 137 | 90 | 3 | 43 | 176 | 23 | 159 | 1.10e-13 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033722.t1 | AT2G38130 | 86.076 | 158 | 22 | 0 | 16 | 173 | 11 | 168 | 6.91e-103 | 295 |
| MS.gene033722.t1 | AT2G38130 | 86.076 | 158 | 22 | 0 | 16 | 173 | 11 | 168 | 6.91e-103 | 295 |
| MS.gene033722.t1 | AT5G13780 | 31.746 | 126 | 83 | 3 | 43 | 165 | 23 | 148 | 6.72e-11 | 59.3 |
Find 50 sgRNAs with CRISPR-Local
Find 219 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGCCGCCTTGGCTTTATT+AGG | 0.293449 | 7.4:+22868207 | MS.gene033722:CDS |
| TGGCCGCCTTGGCTTTATTA+GGG | 0.308261 | 7.4:+22868208 | MS.gene033722:CDS |
| GATTTCTGTTTCGTCTTTGT+TGG | 0.315027 | 7.4:-22864950 | None:intergenic |
| GGGCACGGTGGTTTGTAAAA+TGG | 0.322086 | 7.4:+22865272 | MS.gene033722:CDS |
| TCTAGAGGTGCGTGCAAGTC+TGG | 0.341191 | 7.4:-22868299 | None:intergenic |
| GGCACGGTGGTTTGTAAAAT+GGG | 0.366067 | 7.4:+22865273 | MS.gene033722:CDS |
| CTTGCTCTGTATGGCCGCCT+TGG | 0.385195 | 7.4:+22868197 | MS.gene033722:CDS |
| GAGGCAGAAGTCACAAATAA+AGG | 0.404911 | 7.4:+22868170 | MS.gene033722:CDS |
| ATCGCTACTTCGTCTATCTA+TGG | 0.412371 | 7.4:+22865094 | MS.gene033722:CDS |
| ATTTCTGTTTCGTCTTTGTT+GGG | 0.419367 | 7.4:-22864949 | None:intergenic |
| CTAGACTCACCGGATAAATA+CGG | 0.441585 | 7.4:+22868317 | MS.gene033722:CDS |
| CCAATGCCTCTTCCTCTGTA+GGG | 0.454470 | 7.4:-22865348 | None:intergenic |
| CGCTGAGTTCTTCGTCGACA+AGG | 0.454965 | 7.4:-22865050 | None:intergenic |
| CAGCCACAGAACTTGTTACT+AGG | 0.457121 | 7.4:+22865788 | MS.gene033722:intron |
| CGATAGGTGAAGATGGAGTA+AGG | 0.474230 | 7.4:-22865075 | None:intergenic |
| ATGTGGCTCCCGTATTTATC+CGG | 0.481987 | 7.4:-22868326 | None:intergenic |
| AAAGGAGCACTTGCTCTGTA+TGG | 0.485924 | 7.4:+22868188 | MS.gene033722:CDS |
| ATCAAAGTGATGATGGAATC+TGG | 0.488662 | 7.4:+22865814 | MS.gene033722:CDS |
| CCCTACAGAGGAAGAGGCAT+TGG | 0.495396 | 7.4:+22865348 | MS.gene033722:CDS |
| TAGGTCTATCAAAGTGATGA+TGG | 0.496415 | 7.4:+22865807 | MS.gene033722:CDS |
| GAAGTAGCGATAGGTGAAGA+TGG | 0.509096 | 7.4:-22865082 | None:intergenic |
| ACCAATGCCTCTTCCTCTGT+AGG | 0.521245 | 7.4:-22865349 | None:intergenic |
| ATCAAACCCTACAGAGGAAG+AGG | 0.528144 | 7.4:+22865342 | MS.gene033722:CDS |
| TATACATTTACAGGTTACAT+TGG | 0.534888 | 7.4:+22868148 | MS.gene033722:intron |
| ACATTTACAGGTTACATTGG+AGG | 0.550007 | 7.4:+22868151 | MS.gene033722:intron |
| TTTCATAAGGGTAAATGTGT+GGG | 0.560965 | 7.4:+22865252 | MS.gene033722:CDS |
| CAAGGTTCATGATGAGAGGT+AGG | 0.571066 | 7.4:-22865032 | None:intergenic |
| GTAGCTGATGTATTCAATCT+CGG | 0.580445 | 7.4:-22864995 | None:intergenic |
| TAGACTCACCGGATAAATAC+GGG | 0.590980 | 7.4:+22868318 | MS.gene033722:CDS |
| GCACGCACCTCTAGACTCAC+CGG | 0.601943 | 7.4:+22868307 | MS.gene033722:CDS |
| TAAGGGTAAATGTGTGGGCA+CGG | 0.602307 | 7.4:+22865257 | MS.gene033722:CDS |
| CGCCACGATCACTATGCATG+TGG | 0.608007 | 7.4:-22868343 | None:intergenic |
| GAGATTGAATACATCAGCTA+CGG | 0.624186 | 7.4:+22864997 | MS.gene033722:CDS |
| TATTTATCCGGTGAGTCTAG+AGG | 0.626348 | 7.4:-22868314 | None:intergenic |
| GGTGCGTGCAAGTCTGGACG+AGG | 0.630380 | 7.4:-22868293 | None:intergenic |
| GAGGAAATAAAAGTTTAAGA+CGG | 0.630576 | 7.4:-22868274 | None:intergenic |
| GCTTAGCCCTAATAAAGCCA+AGG | 0.631068 | 7.4:-22868214 | None:intergenic |
| TAGATAGACGAAGTAGCGAT+AGG | 0.633007 | 7.4:-22865091 | None:intergenic |
| AGCCACATGCATAGTGATCG+TGG | 0.635530 | 7.4:+22868341 | MS.gene033722:CDS |
| TCGACAAGGTTCATGATGAG+AGG | 0.638163 | 7.4:-22865036 | None:intergenic |
| CACGGTGGTTTGTAAAATGG+GGG | 0.647644 | 7.4:+22865275 | MS.gene033722:CDS |
| GTTGTTATCAAACCCTACAG+AGG | 0.653909 | 7.4:+22865336 | MS.gene033722:CDS |
| GCACGGTGGTTTGTAAAATG+GGG | 0.655026 | 7.4:+22865274 | MS.gene033722:CDS |
| ATTGAATACATCAGCTACGG+CGG | 0.665233 | 7.4:+22865000 | MS.gene033722:CDS |
| AGACCTAGTAACAAGTTCTG+TGG | 0.674745 | 7.4:-22865791 | None:intergenic |
| GGTACCAGAAAAGAAAGATG+AGG | 0.680873 | 7.4:-22865117 | None:intergenic |
| GGGTAAATGTGTGGGCACGG+TGG | 0.700892 | 7.4:+22865260 | MS.gene033722:CDS |
| TTGGCTTTATTAGGGCTAAG+CGG | 0.719008 | 7.4:+22868216 | MS.gene033722:CDS |
| GATGGAATCTGGTTGTGACG+AGG | 0.743372 | 7.4:+22865825 | MS.gene033722:CDS |
| TAGCCCTAATAAAGCCAAGG+CGG | 0.755354 | 7.4:-22868211 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAACTTTTTTATTTTCATT+TGG | + | chr7.4:22865408-22865427 | MS.gene033722:intron | 10.0% |
| !! | AACATTCAACATTATAAAAT+AGG | - | chr7.4:22868047-22868066 | None:intergenic | 15.0% |
| !! | TAATAAATCAAAGTGATTAA+CGG | - | chr7.4:22865193-22865212 | None:intergenic | 15.0% |
| !! | TTCTTAACATAATAAAAACT+AGG | + | chr7.4:22866313-22866332 | MS.gene033722:intron | 15.0% |
| !!! | AACAAATTATTTTCACATTT+AGG | + | chr7.4:22866768-22866787 | MS.gene033722:intron | 15.0% |
| !!! | AATGATTTTTTTTGCAAAAT+GGG | - | chr7.4:22867633-22867652 | None:intergenic | 15.0% |
| !!! | TAAATTGTGTTTAGATTTTT+TGG | + | chr7.4:22868081-22868100 | MS.gene033722:intron | 15.0% |
| !!! | TTAAAATTAGTCATCTTTTT+AGG | - | chr7.4:22866544-22866563 | None:intergenic | 15.0% |
| !!! | TTATTTTCATTTGGTATAAT+GGG | + | chr7.4:22865417-22865436 | MS.gene033722:intron | 15.0% |
| !!! | TTTATTTTCATTTGGTATAA+TGG | + | chr7.4:22865416-22865435 | MS.gene033722:intron | 15.0% |
| !!! | TTTTTTTATACTTATTAGCT+GGG | + | chr7.4:22866808-22866827 | MS.gene033722:intron | 15.0% |
| !!! | TTTTTTTTATACTTATTAGC+TGG | + | chr7.4:22866807-22866826 | MS.gene033722:intron | 15.0% |
| !! | AAAAGAACTTATACTTACAT+AGG | + | chr7.4:22865620-22865639 | MS.gene033722:intron | 20.0% |
| !! | AAATATTATAGTCTCACATT+TGG | - | chr7.4:22867158-22867177 | None:intergenic | 20.0% |
| !! | AATCATAAGCACTTATTTAT+AGG | + | chr7.4:22865886-22865905 | MS.gene033722:intron | 20.0% |
| !! | ATCATAAGCACTTATTTATA+GGG | + | chr7.4:22865887-22865906 | MS.gene033722:intron | 20.0% |
| !! | GAAAATGTTATTAAGATAAG+TGG | - | chr7.4:22867249-22867268 | None:intergenic | 20.0% |
| !! | GTATATTTGGATTGTATTAT+TGG | + | chr7.4:22865439-22865458 | MS.gene033722:intron | 20.0% |
| !! | TCAAACAACACTATAATATT+TGG | + | chr7.4:22866232-22866251 | MS.gene033722:intron | 20.0% |
| !!! | AAAAACTAAAATGACTTGTT+TGG | + | chr7.4:22866658-22866677 | MS.gene033722:intron | 20.0% |
| !!! | AAAACTAAAATGACTTGTTT+GGG | + | chr7.4:22866659-22866678 | MS.gene033722:intron | 20.0% |
| !!! | AAAAGATGACTAATTTTAAG+TGG | + | chr7.4:22866545-22866564 | MS.gene033722:intron | 20.0% |
| !!! | AAAGATGACTAATTTTAAGT+GGG | + | chr7.4:22866546-22866565 | MS.gene033722:intron | 20.0% |
| !!! | AGTGTAATTTTTCATTGAAA+AGG | - | chr7.4:22867359-22867378 | None:intergenic | 20.0% |
| !!! | CAATGATTTTTTTTGCAAAA+TGG | - | chr7.4:22867634-22867653 | None:intergenic | 20.0% |
| !!! | CATAACAAGTTTAAAATCAA+CGG | - | chr7.4:22867847-22867866 | None:intergenic | 20.0% |
| !!! | TTAAGTTGTTTATACAAACA+AGG | + | chr7.4:22865680-22865699 | MS.gene033722:intron | 20.0% |
| !!! | TTCTTTCTTTGTTTTGTTTT+AGG | + | chr7.4:22865227-22865246 | MS.gene033722:intron | 20.0% |
| !!! | TTTTCACCTTTTTATTATCT+GGG | + | chr7.4:22865152-22865171 | MS.gene033722:intron | 20.0% |
| !!! | TTTTGCAAAAAAAATCATTG+CGG | + | chr7.4:22867634-22867653 | MS.gene033722:intron | 20.0% |
| !!! | TTTTTTATACTTATTAGCTG+GGG | + | chr7.4:22866809-22866828 | MS.gene033722:intron | 20.0% |
| ! | AAAAAACAAGCAAAAGCTAA+AGG | - | chr7.4:22865764-22865783 | None:intergenic | 25.0% |
| ! | AAATAGTCTATTATTAGACG+CGG | - | chr7.4:22866998-22867017 | None:intergenic | 25.0% |
| ! | AAATGACCCAGATAATAAAA+AGG | - | chr7.4:22865161-22865180 | None:intergenic | 25.0% |
| ! | AAATTCACAAATCACATGAT+CGG | - | chr7.4:22867896-22867915 | None:intergenic | 25.0% |
| ! | AACTCTTTATAATCACGTAT+AGG | - | chr7.4:22865706-22865725 | None:intergenic | 25.0% |
| ! | AAGGATAATCAAATAGTTAG+AGG | - | chr7.4:22867068-22867087 | None:intergenic | 25.0% |
| ! | ATGTTGTATAGATTGTATAC+AGG | - | chr7.4:22867316-22867335 | None:intergenic | 25.0% |
| ! | GAAACGATTCAAAAACTAAA+AGG | - | chr7.4:22866667-22866648 | None:intergenic | 25.0% |
| ! | GAGGAAATAAAAGTTTAAGA+CGG | - | chr7.4:22868277-22868296 | None:intergenic | 25.0% |
| ! | GTGAAATACTTCAATTATGT+CGG | + | chr7.4:22868007-22868026 | MS.gene033722:intron | 25.0% |
| ! | GTTCAAAGTTAAACACTTAT+AGG | + | chr7.4:22868109-22868128 | MS.gene033722:intron | 25.0% |
| ! | TAGCACTTAAATAAGGTAAA+CGG | - | chr7.4:22866131-22866150 | None:intergenic | 25.0% |
| ! | TATACATTTACAGGTTACAT+TGG | + | chr7.4:22868148-22868167 | MS.gene033722:intron | 25.0% |
| ! | TGTTGTATAGATTGTATACA+GGG | - | chr7.4:22867315-22867334 | None:intergenic | 25.0% |
| ! | TTCATCATTGTTCAACTTAT+TGG | + | chr7.4:22867979-22867998 | MS.gene033722:intron | 25.0% |
| !! | AAAAACTAAAAGGACTTGTT+TGG | - | chr7.4:22866436-22866455 | None:intergenic | 25.0% |
| !! | AAAACTAAAAGGACTTGTTT+GGG | - | chr7.4:22866435-22866454 | None:intergenic | 25.0% |
| !! | AATAAGTTGAAAACAGCTTA+TGG | - | chr7.4:22865520-22865539 | None:intergenic | 25.0% |
| !! | CTTCTTGTTTATACATTTAC+AGG | + | chr7.4:22868139-22868158 | MS.gene033722:intron | 25.0% |
| !! | CTTTTCACCTTTTTATTATC+TGG | + | chr7.4:22865151-22865170 | MS.gene033722:intron | 25.0% |
| !!! | ATTAGTCATCTTTTTAGGTA+TGG | - | chr7.4:22866539-22866558 | None:intergenic | 25.0% |
| !!! | CTTTTTCACTACTATTTGAA+TGG | + | chr7.4:22868239-22868258 | MS.gene033722:CDS | 25.0% |
| !!! | TTGTTTTAGGCTTTTCATAA+GGG | + | chr7.4:22865240-22865259 | MS.gene033722:intron | 25.0% |
| !!! | TTTGGTATAATGGGTATATT+TGG | + | chr7.4:22865426-22865445 | MS.gene033722:intron | 25.0% |
| !!! | TTTGTTTTAGGCTTTTCATA+AGG | + | chr7.4:22865239-22865258 | MS.gene033722:intron | 25.0% |
| AAATACTTCAATTATGTCGG+TGG | + | chr7.4:22868010-22868029 | MS.gene033722:intron | 30.0% | |
| AACAAAGATAGATAAGACGA+AGG | - | chr7.4:22867094-22867113 | None:intergenic | 30.0% | |
| AGACTGTCTATTAAAGCTTA+TGG | + | chr7.4:22865476-22865495 | MS.gene033722:intron | 30.0% | |
| AGGTGAAAAGATGAAAGATT+TGG | - | chr7.4:22865141-22865160 | None:intergenic | 30.0% | |
| ATAGATAAGACGAAGGAATA+AGG | - | chr7.4:22867087-22867106 | None:intergenic | 30.0% | |
| ATTTCTGTTTCGTCTTTGTT+GGG | - | chr7.4:22864952-22864971 | None:intergenic | 30.0% | |
| CAAAACTACTACAGATTGAA+GGG | - | chr7.4:22867801-22867820 | None:intergenic | 30.0% | |
| CCAACTATGCTATCTATAAT+AGG | + | chr7.4:22866617-22866636 | MS.gene033722:intron | 30.0% | |
| CCTATCAAACAAAATAACAG+GGG | - | chr7.4:22867441-22867460 | None:intergenic | 30.0% | |
| CCTATTATAGATAGCATAGT+TGG | - | chr7.4:22866620-22866639 | None:intergenic | 30.0% | |
| GCCTATCAAACAAAATAACA+GGG | - | chr7.4:22867442-22867461 | None:intergenic | 30.0% | |
| GGGAAAAACGAAAAACTTAA+AGG | + | chr7.4:22866708-22866727 | MS.gene033722:intron | 30.0% | |
| GGGAAAAACGAAAAACTTAA+AGG | - | chr7.4:22866727-22866708 | None:intergenic | 30.0% | |
| TACTACATCTCTTAGTAAAC+TGG | + | chr7.4:22867529-22867548 | MS.gene033722:intron | 30.0% | |
| TCAAAACTACTACAGATTGA+AGG | - | chr7.4:22867802-22867821 | None:intergenic | 30.0% | |
| TGTCTATTAAAGCTTATGGA+AGG | + | chr7.4:22865480-22865499 | MS.gene033722:intron | 30.0% | |
| TTTAGGTCAAATGCATCTAA+AGG | - | chr7.4:22866735-22866754 | None:intergenic | 30.0% | |
| TTTATTCGTACAAACTGACA+TGG | - | chr7.4:22866166-22866185 | None:intergenic | 30.0% | |
| TTTCATAAGGGTAAATGTGT+GGG | + | chr7.4:22865252-22865271 | MS.gene033722:CDS | 30.0% | |
| ! | GAAACTTAAAGGACTTGTTT+GGG | - | chr7.4:22866406-22866425 | None:intergenic | 30.0% |
| ! | GTCTTATCTATCTTTGTTGT+TGG | + | chr7.4:22867096-22867115 | MS.gene033722:intron | 30.0% |
| ! | TCTATTACAAGTTGACTTTC+CGG | + | chr7.4:22867275-22867294 | MS.gene033722:intron | 30.0% |
| ! | TGAAACTTAAAGGACTTGTT+TGG | - | chr7.4:22866407-22866426 | None:intergenic | 30.0% |
| ! | TGTTGACGATGATAGTTTTT+AGG | - | chr7.4:22866752-22866771 | None:intergenic | 30.0% |
| ! | TTTCAAACAAGTCCTTTTAG+AGG | + | chr7.4:22866462-22866481 | MS.gene033722:intron | 30.0% |
| ! | TTTTCATAAGGGTAAATGTG+TGG | + | chr7.4:22865251-22865270 | MS.gene033722:CDS | 30.0% |
| !! | ACTAATTTTAAGTGGGTGTT+AGG | + | chr7.4:22866553-22866572 | MS.gene033722:intron | 30.0% |
| !! | TTACACTTAAAGCATTGTTC+CGG | + | chr7.4:22867372-22867391 | MS.gene033722:intron | 30.0% |
| !!! | AAAGCTTTTAGTTTTGGTGT+TGG | + | chr7.4:22866098-22866117 | MS.gene033722:intron | 30.0% |
| !!! | ATCTTTTTAGGTATGGCAAA+TGG | - | chr7.4:22866532-22866551 | None:intergenic | 30.0% |
| !!! | GTAGAGAAAGCTTTTAGTTT+TGG | + | chr7.4:22866092-22866111 | MS.gene033722:intron | 30.0% |
| !!! | TTGGGACTTTTGAAACTTAA+AGG | + | chr7.4:22866677-22866696 | MS.gene033722:intron | 30.0% |
| !!! | TTGGGACTTTTGAAACTTAA+AGG | - | chr7.4:22866696-22866677 | None:intergenic | 30.0% |
| AAAATCATTGCGGAACCAAT+TGG | + | chr7.4:22867644-22867663 | MS.gene033722:intron | 35.0% | |
| AAATAGTTAGAGGTAGAGAG+AGG | - | chr7.4:22867058-22867077 | None:intergenic | 35.0% | |
| ACATTGCATATAACCTTGAG+TGG | + | chr7.4:22867332-22867351 | MS.gene033722:intron | 35.0% | |
| ACATTTACAGGTTACATTGG+AGG | + | chr7.4:22868151-22868170 | MS.gene033722:intron | 35.0% | |
| ACTAGGTCAAATGCATCTAA+AGG | + | chr7.4:22866330-22866349 | MS.gene033722:intron | 35.0% | |
| AGAGTCAACGAGATACTAAT+GGG | - | chr7.4:22867183-22867202 | None:intergenic | 35.0% | |
| ATCTTTGCAATGAACTCAAC+AGG | + | chr7.4:22867684-22867703 | MS.gene033722:intron | 35.0% | |
| ATGCATCAACTTATCAGAGT+TGG | - | chr7.4:22867728-22867747 | None:intergenic | 35.0% | |
| CAAACCAAAATCTCAGAAAC+GGG | + | chr7.4:22866856-22866875 | MS.gene033722:intron | 35.0% | |
| CGCCTATCAAACAAAATAAC+AGG | - | chr7.4:22867443-22867462 | None:intergenic | 35.0% | |
| CTAAATTGTATGTTTCCCCT+AGG | + | chr7.4:22866833-22866852 | MS.gene033722:intron | 35.0% | |
| CTAGGGGAAACATACAATTT+AGG | - | chr7.4:22866835-22866854 | None:intergenic | 35.0% | |
| GAAACTTAAAGGACCACTTT+GGG | + | chr7.4:22866688-22866707 | MS.gene033722:intron | 35.0% | |
| GAAACTTAAAGGACCACTTT+GGG | - | chr7.4:22866707-22866688 | None:intergenic | 35.0% | |
| GAGATTGAATACATCAGCTA+CGG | + | chr7.4:22864997-22865016 | MS.gene033722:CDS | 35.0% | |
| GATTTCTGTTTCGTCTTTGT+TGG | - | chr7.4:22864953-22864972 | None:intergenic | 35.0% | |
| GCAAACCAAAATCTCAGAAA+CGG | + | chr7.4:22866855-22866874 | MS.gene033722:intron | 35.0% | |
| GTAGCTGATGTATTCAATCT+CGG | - | chr7.4:22864998-22865017 | None:intergenic | 35.0% | |
| TACAAACTGACATGGAACTA+TGG | - | chr7.4:22866158-22866177 | None:intergenic | 35.0% | |
| TACCATCACAACTCAATTGA+TGG | - | chr7.4:22867921-22867940 | None:intergenic | 35.0% | |
| TAGGTCTATCAAAGTGATGA+TGG | + | chr7.4:22865807-22865826 | MS.gene033722:CDS | 35.0% | |
| TGAAACTTAAAGGACCACTT+TGG | + | chr7.4:22866687-22866706 | MS.gene033722:intron | 35.0% | |
| TGAAACTTAAAGGACCACTT+TGG | - | chr7.4:22866706-22866687 | None:intergenic | 35.0% | |
| TGAGTTGTGATGGTATGTTT+GGG | + | chr7.4:22867926-22867945 | MS.gene033722:intron | 35.0% | |
| TGCATCAACTTATCAGAGTT+GGG | - | chr7.4:22867727-22867746 | None:intergenic | 35.0% | |
| TGGAAGCTAGCACTTAAATA+AGG | - | chr7.4:22866138-22866157 | None:intergenic | 35.0% | |
| ! | TTGAGTTGTGATGGTATGTT+TGG | + | chr7.4:22867925-22867944 | MS.gene033722:intron | 35.0% |
| !! | ATCAAAGTGATGATGGAATC+TGG | + | chr7.4:22865814-22865833 | MS.gene033722:CDS | 35.0% |
| !! | GTTTTTCGTTTTTCCCAAAG+TGG | + | chr7.4:22866361-22866380 | MS.gene033722:intron | 35.0% |
| !! | GTTTTTCGTTTTTCCCAAAG+TGG | - | chr7.4:22866380-22866361 | None:intergenic | 35.0% |
| !! | TTTGTTGTTGGTGTTTCTGT+GGG | + | chr7.4:22867108-22867127 | MS.gene033722:intron | 35.0% |
| !!! | ACTGGCTTTTCATATAGTAC+TGG | + | chr7.4:22867547-22867566 | MS.gene033722:intron | 35.0% |
| !!! | ATTGAGAGTATTTTTCCACC+AGG | + | chr7.4:22866915-22866934 | MS.gene033722:intron | 35.0% |
| !!! | CCCCTGTTATTTTGTTTGAT+AGG | + | chr7.4:22867438-22867457 | MS.gene033722:intron | 35.0% |
| !!! | CTTTTAGTTTTGGTGTTGGT+TGG | + | chr7.4:22866102-22866121 | MS.gene033722:intron | 35.0% |
| !!! | TTTTTAGGTATGGCAAATGG+TGG | - | chr7.4:22866529-22866548 | None:intergenic | 35.0% |
| ACTACAGATTGAAGGGTAGT+GGG | - | chr7.4:22867794-22867813 | None:intergenic | 40.0% | |
| AGACAAGATAGGATCAAGGA+CGG | - | chr7.4:22867219-22867238 | None:intergenic | 40.0% | |
| AGACCTACAGAGACAAACTT+TGG | - | chr7.4:22867605-22867624 | None:intergenic | 40.0% | |
| AGACCTAGTAACAAGTTCTG+TGG | - | chr7.4:22865794-22865813 | None:intergenic | 40.0% | |
| AGTTGTATCCCAATGTCATG+TGG | + | chr7.4:22866060-22866079 | MS.gene033722:intron | 40.0% | |
| ATACCTAGACCACATGACAT+TGG | - | chr7.4:22866072-22866091 | None:intergenic | 40.0% | |
| ATCGCTACTTCGTCTATCTA+TGG | + | chr7.4:22865094-22865113 | MS.gene033722:CDS | 40.0% | |
| ATGAACTCAACAGGTCAATG+AGG | + | chr7.4:22867693-22867712 | MS.gene033722:intron | 40.0% | |
| ATTGAATACATCAGCTACGG+CGG | + | chr7.4:22865000-22865019 | MS.gene033722:CDS | 40.0% | |
| CATCACCATCATCCTCTAAA+AGG | - | chr7.4:22866477-22866496 | None:intergenic | 40.0% | |
| CTAGACTCACCGGATAAATA+CGG | + | chr7.4:22868317-22868336 | MS.gene033722:CDS | 40.0% | |
| CTCATCTTTGGTACCAAATC+TGG | - | chr7.4:22866581-22866600 | None:intergenic | 40.0% | |
| CTTCCAAAGTTTGTCTCTGT+AGG | + | chr7.4:22867599-22867618 | MS.gene033722:intron | 40.0% | |
| GAGAGTCAACGAGATACTAA+TGG | - | chr7.4:22867184-22867203 | None:intergenic | 40.0% | |
| GAGGCAGAAGTCACAAATAA+AGG | + | chr7.4:22868170-22868189 | MS.gene033722:CDS | 40.0% | |
| GATTCATGCAGGTGATAAAC+CGG | - | chr7.4:22867394-22867413 | None:intergenic | 40.0% | |
| GGAACACTGCATGTTTGAAA+AGG | - | chr7.4:22867031-22867050 | None:intergenic | 40.0% | |
| GGTACCAGAAAAGAAAGATG+AGG | - | chr7.4:22865120-22865139 | None:intergenic | 40.0% | |
| GGTATGTTTGGGTACTAGTT+TGG | + | chr7.4:22867937-22867956 | MS.gene033722:intron | 40.0% | |
| GTACAAACTGACATTGAAGC+AGG | - | chr7.4:22866882-22866901 | None:intergenic | 40.0% | |
| GTTGTTATCAAACCCTACAG+AGG | + | chr7.4:22865336-22865355 | MS.gene033722:CDS | 40.0% | |
| TAAAGAGTGATGCAAACCCT+AGG | - | chr7.4:22867416-22867435 | None:intergenic | 40.0% | |
| TACCTAGACCACATGACATT+GGG | - | chr7.4:22866071-22866090 | None:intergenic | 40.0% | |
| TACTACAGATTGAAGGGTAG+TGG | - | chr7.4:22867795-22867814 | None:intergenic | 40.0% | |
| TAGACTCACCGGATAAATAC+GGG | + | chr7.4:22868318-22868337 | MS.gene033722:CDS | 40.0% | |
| TAGATAGACGAAGTAGCGAT+AGG | - | chr7.4:22865094-22865113 | None:intergenic | 40.0% | |
| TATCACCTGCATGAATCCTA+GGG | + | chr7.4:22867397-22867416 | MS.gene033722:intron | 40.0% | |
| TATTAGACGCGGTTCAAGAT+GGG | - | chr7.4:22866987-22867006 | None:intergenic | 40.0% | |
| TATTTATCCGGTGAGTCTAG+AGG | - | chr7.4:22868317-22868336 | None:intergenic | 40.0% | |
| TCATTGAAAAGGACCACTCA+AGG | - | chr7.4:22867348-22867367 | None:intergenic | 40.0% | |
| TGCTTCCTTGAACTCATCTT+TGG | - | chr7.4:22866593-22866612 | None:intergenic | 40.0% | |
| TGGTACCAAAGATGAGTTCA+AGG | + | chr7.4:22866585-22866604 | MS.gene033722:intron | 40.0% | |
| TTATCACCTGCATGAATCCT+AGG | + | chr7.4:22867396-22867415 | MS.gene033722:intron | 40.0% | |
| TTATTAGACGCGGTTCAAGA+TGG | - | chr7.4:22866988-22867007 | None:intergenic | 40.0% | |
| ! | AGCTTAATCTAGCTTCAACG+AGG | + | chr7.4:22867758-22867777 | MS.gene033722:intron | 40.0% |
| ! | ATGGCCTCATCTTTCTTTTC+TGG | + | chr7.4:22865113-22865132 | MS.gene033722:CDS | 40.0% |
| ! | CTTAATCTAGCTTCAACGAG+GGG | + | chr7.4:22867760-22867779 | MS.gene033722:intron | 40.0% |
| ! | GAACATCGTAGCACTTTTAG+AGG | + | chr7.4:22865297-22865316 | MS.gene033722:CDS | 40.0% |
| ! | GACCATCAATTGAGTTGTGA+TGG | + | chr7.4:22867916-22867935 | MS.gene033722:intron | 40.0% |
| ! | GCTTAATCTAGCTTCAACGA+GGG | + | chr7.4:22867759-22867778 | MS.gene033722:intron | 40.0% |
| ! | GGTACTAGTTTGGTTTAGTC+TGG | + | chr7.4:22867947-22867966 | MS.gene033722:intron | 40.0% |
| !! | AGAGTATTTTTCCACCAGGT+GGG | + | chr7.4:22866196-22866215 | MS.gene033722:intron | 40.0% |
| !! | CAAGTCCTTTTAGAGGATGA+TGG | + | chr7.4:22866469-22866488 | MS.gene033722:intron | 40.0% |
| !! | CTTTGTTGTTGGTGTTTCTG+TGG | + | chr7.4:22867107-22867126 | MS.gene033722:intron | 40.0% |
| !! | TTGGCTTTATTAGGGCTAAG+CGG | + | chr7.4:22868216-22868235 | MS.gene033722:CDS | 40.0% |
| !!! | AGTGAGAGTATTTTTCCACC+AGG | + | chr7.4:22866192-22866211 | MS.gene033722:intron | 40.0% |
| !!! | CTGAGATTTTGGTTTGCCTA+GGG | - | chr7.4:22866852-22866871 | None:intergenic | 40.0% |
| !!! | TCTGAGATTTTGGTTTGCCT+AGG | - | chr7.4:22866853-22866872 | None:intergenic | 40.0% |
| !!! | TGAGATTTTGGTTTGCCTAG+GGG | - | chr7.4:22866851-22866870 | None:intergenic | 40.0% |
| ATCAAACCCTACAGAGGAAG+AGG | + | chr7.4:22865342-22865361 | MS.gene033722:CDS | 45.0% | |
| ATCCCAATGTCATGTGGTCT+AGG | + | chr7.4:22866066-22866085 | MS.gene033722:intron | 45.0% | |
| ATCTCATAACTAACCCCACC+TGG | - | chr7.4:22866213-22866232 | None:intergenic | 45.0% | |
| ATGTGGCTCCCGTATTTATC+CGG | - | chr7.4:22868329-22868348 | None:intergenic | 45.0% | |
| CAAGGTTCATGATGAGAGGT+AGG | - | chr7.4:22865035-22865054 | None:intergenic | 45.0% | |
| CACGAGACAAGATAGGATCA+AGG | - | chr7.4:22867223-22867242 | None:intergenic | 45.0% | |
| CGATAGGTGAAGATGGAGTA+AGG | - | chr7.4:22865078-22865097 | None:intergenic | 45.0% | |
| GAAGTAGCGATAGGTGAAGA+TGG | - | chr7.4:22865085-22865104 | None:intergenic | 45.0% | |
| GCTTAGCCCTAATAAAGCCA+AGG | - | chr7.4:22868217-22868236 | None:intergenic | 45.0% | |
| TAAGGGTAAATGTGTGGGCA+CGG | + | chr7.4:22865257-22865276 | MS.gene033722:CDS | 45.0% | |
| TAGCCCTAATAAAGCCAAGG+CGG | - | chr7.4:22868214-22868233 | None:intergenic | 45.0% | |
| TCGACAAGGTTCATGATGAG+AGG | - | chr7.4:22865039-22865058 | None:intergenic | 45.0% | |
| TCTGTGTGAGCAGATCCAAT+TGG | - | chr7.4:22867662-22867681 | None:intergenic | 45.0% | |
| TTAGAGGTAGAGAGAGGTCA+AGG | - | chr7.4:22867052-22867071 | None:intergenic | 45.0% | |
| ! | CACGGTGGTTTGTAAAATGG+GGG | + | chr7.4:22865275-22865294 | MS.gene033722:CDS | 45.0% |
| ! | GAGTATTTTTCCACCAGGTG+GGG | + | chr7.4:22866197-22866216 | MS.gene033722:intron | 45.0% |
| ! | GCACGGTGGTTTGTAAAATG+GGG | + | chr7.4:22865274-22865293 | MS.gene033722:CDS | 45.0% |
| ! | GGCACGGTGGTTTGTAAAAT+GGG | + | chr7.4:22865273-22865292 | MS.gene033722:CDS | 45.0% |
| ! | TACAAGTTGACTTTCCGGTC+AGG | + | chr7.4:22867280-22867299 | MS.gene033722:intron | 45.0% |
| !! | AAAGGAGCACTTGCTCTGTA+TGG | + | chr7.4:22868188-22868207 | MS.gene033722:CDS | 45.0% |
| !! | AGATTGAAGGGTAGTGGGAT+TGG | - | chr7.4:22867789-22867808 | None:intergenic | 45.0% |
| !! | CAGCCACAGAACTTGTTACT+AGG | + | chr7.4:22865788-22865807 | MS.gene033722:intron | 45.0% |
| !! | GATTGAAGGGTAGTGGGATT+GGG | - | chr7.4:22867788-22867807 | None:intergenic | 45.0% |
| !!! | GAGAGTATTTTTCCACCAGG+TGG | + | chr7.4:22866195-22866214 | MS.gene033722:intron | 45.0% |
| ACCAATGCCTCTTCCTCTGT+AGG | - | chr7.4:22865352-22865371 | None:intergenic | 50.0% | |
| AGCCACATGCATAGTGATCG+TGG | + | chr7.4:22868341-22868360 | MS.gene033722:CDS | 50.0% | |
| CCAATGCCTCTTCCTCTGTA+GGG | - | chr7.4:22865351-22865370 | None:intergenic | 50.0% | |
| GATGGAATCTGGTTGTGACG+AGG | + | chr7.4:22865825-22865844 | MS.gene033722:CDS | 50.0% | |
| GCAAACCCTAGGATTCATGC+AGG | - | chr7.4:22867405-22867424 | None:intergenic | 50.0% | |
| GTGGTCACACGAGACAAGAT+AGG | - | chr7.4:22867230-22867249 | None:intergenic | 50.0% | |
| TCATAACTAACCCCACCTGG+TGG | - | chr7.4:22866210-22866229 | None:intergenic | 50.0% | |
| TGGGTGTTAGGAGCCAGATT+TGG | + | chr7.4:22866565-22866584 | MS.gene033722:intron | 50.0% | |
| ! | GGGCACGGTGGTTTGTAAAA+TGG | + | chr7.4:22865272-22865291 | MS.gene033722:CDS | 50.0% |
| !! | ATGGCCGCCTTGGCTTTATT+AGG | + | chr7.4:22868207-22868226 | MS.gene033722:CDS | 50.0% |
| !! | TGGCCGCCTTGGCTTTATTA+GGG | + | chr7.4:22868208-22868227 | MS.gene033722:CDS | 50.0% |
| !!! | CAGGCCCGTTTCTGAGATTT+TGG | - | chr7.4:22866863-22866882 | None:intergenic | 50.0% |
| CAGGGCAGAAAAAGCCTGAC+CGG | - | chr7.4:22867297-22867316 | None:intergenic | 55.0% | |
| CGCCACGATCACTATGCATG+TGG | - | chr7.4:22868346-22868365 | None:intergenic | 55.0% | |
| CGCTGAGTTCTTCGTCGACA+AGG | - | chr7.4:22865053-22865072 | None:intergenic | 55.0% | |
| ! | CCCTACAGAGGAAGAGGCAT+TGG | + | chr7.4:22865348-22865367 | MS.gene033722:CDS | 55.0% |
| ! | TCTAGAGGTGCGTGCAAGTC+TGG | - | chr7.4:22868302-22868321 | None:intergenic | 55.0% |
| CTTGCTCTGTATGGCCGCCT+TGG | + | chr7.4:22868197-22868216 | MS.gene033722:CDS | 60.0% | |
| GCACGCACCTCTAGACTCAC+CGG | + | chr7.4:22868307-22868326 | MS.gene033722:CDS | 60.0% | |
| GGGTAAATGTGTGGGCACGG+TGG | + | chr7.4:22865260-22865279 | MS.gene033722:CDS | 60.0% | |
| GGTGCGTGCAAGTCTGGACG+AGG | - | chr7.4:22868296-22868315 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 22864940 | 22868385 | 22864940 | ID=MS.gene033722 |
| chr7.4 | mRNA | 22864940 | 22868385 | 22864940 | ID=MS.gene033722.t1;Parent=MS.gene033722 |
| chr7.4 | exon | 22864940 | 22865134 | 22864940 | ID=MS.gene033722.t1.exon1;Parent=MS.gene033722.t1 |
| chr7.4 | CDS | 22864940 | 22865134 | 22864940 | ID=cds.MS.gene033722.t1;Parent=MS.gene033722.t1 |
| chr7.4 | exon | 22865249 | 22865369 | 22865249 | ID=MS.gene033722.t1.exon2;Parent=MS.gene033722.t1 |
| chr7.4 | CDS | 22865249 | 22865369 | 22865249 | ID=cds.MS.gene033722.t1;Parent=MS.gene033722.t1 |
| chr7.4 | exon | 22865791 | 22865846 | 22865791 | ID=MS.gene033722.t1.exon3;Parent=MS.gene033722.t1 |
| chr7.4 | CDS | 22865791 | 22865846 | 22865791 | ID=cds.MS.gene033722.t1;Parent=MS.gene033722.t1 |
| chr7.4 | exon | 22868161 | 22868385 | 22868161 | ID=MS.gene033722.t1.exon4;Parent=MS.gene033722.t1 |
| chr7.4 | CDS | 22868161 | 22868385 | 22868161 | ID=cds.MS.gene033722.t1;Parent=MS.gene033722.t1 |
| Gene Sequence |
| Protein sequence |
