AlfalfaGEDB | MS.gene033722

M. sativa cultivar XinJiangDaYe / MS.gene033722

KEGG: K00670
GO: GO:0003674 GO:0003824 GO:0008080 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747
PFAM: PF00583.28

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene033722.t1	XP_003624511.2	99.5	198	1	0	1	198	23	220	7.70E-110	406.4

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene033722.t1	O80438	86.8	159	21	0	13	171	8	166	7.9e-79	294.7

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene033722.t1	G7KXA5	99.5	198	1	0	1	198	1	198	5.6e-110	406.4

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MS.gene033722.t1	TR	GNAT

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene033722.t1	MTR_7g084140	99.495	198	1	0	1	198	1	198	1.33e-147	408
MS.gene033722.t1	MTR_3g034200	32.117	137	90	3	43	176	23	159	1.10e-13	66.6

Showing 1 to 2 of 2 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene033722.t1	AT2G38130	86.076	158	22	0	16	173	11	168	6.91e-103	295
MS.gene033722.t1	AT2G38130	86.076	158	22	0	16	173	11	168	6.91e-103	295
MS.gene033722.t1	AT5G13780	31.746	126	83	3	43	165	23	148	6.72e-11	59.3

Showing 1 to 3 of 3 entries

Previous1Next

Find 50 sgRNAs with CRISPR-Local

Find 219 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGAGCACTTGCTCTGTA+TGG	0.485924	7.4:+22868188	MS.gene033722:CDS
ACATTTACAGGTTACATTGG+AGG	0.550007	7.4:+22868151	MS.gene033722:intron
ACCAATGCCTCTTCCTCTGT+AGG	0.521245	7.4:-22865349	None:intergenic
AGACCTAGTAACAAGTTCTG+TGG	0.674745	7.4:-22865791	None:intergenic
AGCCACATGCATAGTGATCG+TGG	0.635530	7.4:+22868341	MS.gene033722:CDS
ATCAAACCCTACAGAGGAAG+AGG	0.528144	7.4:+22865342	MS.gene033722:CDS
ATCAAAGTGATGATGGAATC+TGG	0.488662	7.4:+22865814	MS.gene033722:CDS
ATCGCTACTTCGTCTATCTA+TGG	0.412371	7.4:+22865094	MS.gene033722:CDS
ATGGCCGCCTTGGCTTTATT+AGG	0.293449	7.4:+22868207	MS.gene033722:CDS
ATGTGGCTCCCGTATTTATC+CGG	0.481987	7.4:-22868326	None:intergenic

Showing 1 to 10 of 50 entries

Previous1 2 3 4 5Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAATACTTCAATTATGTCGG+TGG	+	chr7.4:22868010-22868029	MS.gene033722:intron	30.0%
AACAAAGATAGATAAGACGA+AGG	-	chr7.4:22867094-22867113	None:intergenic	30.0%
AGACTGTCTATTAAAGCTTA+TGG	+	chr7.4:22865476-22865495	MS.gene033722:intron	30.0%
AGGTGAAAAGATGAAAGATT+TGG	-	chr7.4:22865141-22865160	None:intergenic	30.0%
ATAGATAAGACGAAGGAATA+AGG	-	chr7.4:22867087-22867106	None:intergenic	30.0%
ATTTCTGTTTCGTCTTTGTT+GGG	-	chr7.4:22864952-22864971	None:intergenic	30.0%
CAAAACTACTACAGATTGAA+GGG	-	chr7.4:22867801-22867820	None:intergenic	30.0%
CCAACTATGCTATCTATAAT+AGG	+	chr7.4:22866617-22866636	MS.gene033722:intron	30.0%
CCTATCAAACAAAATAACAG+GGG	-	chr7.4:22867441-22867460	None:intergenic	30.0%
CCTATTATAGATAGCATAGT+TGG	-	chr7.4:22866620-22866639	None:intergenic	30.0%

Showing 1 to 10 of 219 entries

Previous1 2 3 4 5…22Next

Chromosome	Type	Strat	End	Strand	Name
chr7.4	gene	22864940	22868385	22864940	ID=MS.gene033722
chr7.4	mRNA	22864940	22868385	22864940	ID=MS.gene033722.t1;Parent=MS.gene033722
chr7.4	exon	22864940	22865134	22864940	ID=MS.gene033722.t1.exon1;Parent=MS.gene033722.t1
chr7.4	CDS	22864940	22865134	22864940	ID=cds.MS.gene033722.t1;Parent=MS.gene033722.t1
chr7.4	exon	22865249	22865369	22865249	ID=MS.gene033722.t1.exon2;Parent=MS.gene033722.t1
chr7.4	CDS	22865249	22865369	22865249	ID=cds.MS.gene033722.t1;Parent=MS.gene033722.t1
chr7.4	exon	22865791	22865846	22865791	ID=MS.gene033722.t1.exon3;Parent=MS.gene033722.t1
chr7.4	CDS	22865791	22865846	22865791	ID=cds.MS.gene033722.t1;Parent=MS.gene033722.t1
chr7.4	exon	22868161	22868385	22868161	ID=MS.gene033722.t1.exon4;Parent=MS.gene033722.t1
chr7.4	CDS	22868161	22868385	22868161	ID=cds.MS.gene033722.t1;Parent=MS.gene033722.t1

Gene Sequence

>MS.gene033722

ATGGAAACTCCCAACAAAGACGAAACAGAAATCTCGAAAGTAGAATTCAATGATTCCGAGATTGAATACATCAGCTACGGCGGCGAACATCACCTACCTCTCATCATGAACCTTGTCGACGAAGAACTCAGCGAACCTTACTCCATCTTCACCTATCGCTACTTCGTCTATCTATGGCCTCATCTTTCTTTTCTGGTACCAAATCTTTCATCTTTTCACCTTTTTATTATCTGGGTCATTTTTCAATTCACCGTTAATCACTTTGATTTATTAACATTTGTGTTTTCTTCTTTCTTTGTTTTGTTTTAGGCTTTTCATAAGGGTAAATGTGTGGGCACGGTGGTTTGTAAAATGGGGGAACATCGTAGCACTTTTAGAGGATACATTGCTATGCTTGTTGTTATCAAACCCTACAGAGGAAGAGGCATTGGTAATTTTAATTCACTTTGTTGTATTTTCTTTTTAAATTTAACTTTTTTATTTTCATTTGGTATAATGGGTATATTTGGATTGTATTATTGGAGCTTATACTTGTGAGACTGTCTATTAAAGCTTATGGAAGGAGCTCATTACATGTCCATAAGCTGTTTTCAACTTATTTTCATAAGCTCTTTTGTATAGCAAATGAAAACAGTTTATAGCTTGCAATAGAGTTTGACTTTATTTTATCTCTTGTTATAAAAAGAACTTATACTTACATAGGCTTTAATTTGATAAGTGCTTATGCTATAAGCACTTAATTAAGTTGTTTATACAAACAAGGCCTATACGTGATTATAAAGAGTTATTGAAAAATGTATGTTTTATGCTGCTGATTGTGACCTTTAGCTTTTGCTTGTTTTTTTATGCAGCCACAGAACTTGTTACTAGGTCTATCAAAGTGATGATGGAATCTGGTTGTGACGAGGTATGTATAATCGTGTGTAACTGTGAGATATAAAATTGAAATCATAAGCACTTATTTATAGGGAAATAAAATTGAAACAATTTTATCTTCTAAATATTTTTTCGCTTCTTGTATCTTTGAACTTTAAAGATATTTTTGTTTGTCAGAAATCAATTACTTATCAATCAAAAAGTTTGTACTAGTCAGAAGTTGAGCTAAACTATGTCTATGTCTAGTTGTATCCCAATGTCATGTGGTCTAGGTATGTAGAGAAAGCTTTTAGTTTTGGTGTTGGTTGGCAGCCGTTTACCTTATTTAAGTGCTAGCTTCCATAGTTCCATGTCAGTTTGTACGAATAAAAACAATAGTGAGAGTATTTTTCCACCAGGTGGGGTTAGTTATGAGATCAAACAACACTATAATATTTGGATATTAGATAAAAAATTCAATGTTTTTTGCATGAAGTTTGATGTTTTTCTTAGATTATTTCTTAACATAATAAAAACTAGGTCAAATGCATCTAAAGGTCCTTTAAGTTTTTCGTTTTTCCCAAAGTGGTCCTTTAAGTTTCAAAAGTCCCAAACAAGTCCTTTAAGTTTCAAAAGTCCCAAACAAGTCCTTTTAGTTTTTGAATCGTTTCAAACAAGTCCTTTTAGAGGATGATGGTGATGATTCAGATGATAGCAACAAAGAGCATTATCCACCATTTGCCATACCTAAAAAGATGACTAATTTTAAGTGGGTGTTAGGAGCCAGATTTGGTACCAAAGATGAGTTCAAGGAAGCAATTACCAACTATGCTATCTATAATAGGACTTGTATGAAACGATTCAAAAACTAAAATGACTTGTTTGGGACTTTTGAAACTTAAAGGACCACTTTGGGAAAAACGAAAAACTTAAAGGACCTTTAGATGCATTTGACCTAAAAACTATCATCGTCAACAAATTATTTTCACATTTAGGAATTCAATTTTTTTATTTTTTTTTATACTTATTAGCTGGGGCCTAAATTGTATGTTTCCCCTAGGCAAACCAAAATCTCAGAAACGGGCCTGCTTCAATGTCAGTTTGTACGAATAAAAACAACATTGAGAGTATTTTTCCACCAGGTGGGGTTAGTTATGAGATCAAACAACAGTATAATAACAGTGTACGTCCCATCTTGAACCGCGTCTAATAATAGACTATTTAACATCAAATCCTTTTCAAACATGCAGTGTTCCTTGACCTCTCTCTACCTCTAACTATTTGATTATCCTTATTCCTTCGTCTTATCTATCTTTGTTGTTGGTGTTTCTGTGGGTATTCTTTGCATATACTCTGATCGCCAAATGTGAGACTATAATATTTCTCCCATTAGTATCTCGTTGACTCTCTGTGTGATGTTTCCGTCCTTGATCCTATCTTGTCTCGTGTGACCACTTATCTTAATAACATTTTCATCTAGTCTATTACAAGTTGACTTTCCGGTCAGGCTTTTTCTGCCCTGTATACAATCTATACAACATTGCATATAACCTTGAGTGGTCCTTTTCAATGAAAAATTACACTTAAAGCATTGTTCCGGTTTATCACCTGCATGAATCCTAGGGTTTGCATCACTCTTTATTCCCCTGTTATTTTGTTTGATAGGCGCAAAGCAAACAAACTGTATGATTTAAAATACATTGTGTTCTCAAATTTCATCTCTAAGCTAGAATTTACTACATCTCTTAGTAAACTGGCTTTTCATATAGTACTGGTTTACTTCTATTTAAGTGAAAATCATGTGCTTCCAAAGTTTGTCTCTGTAGGTCTAACTTCCCATTTTGCAAAAAAAATCATTGCGGAACCAATTGGATCTGCTCACACAGAAAATCTTTGCAATGAACTCAACAGGTCAATGAGGTCACTCAGCCCAACTCTGATAAGTTGATGCATAAATCTACAAAGCTTAATCTAGCTTCAACGAGGGGAACCCAATCCCACTACCCTTCAATCTGTAGTAGTTTTGAATCTTGTGATTTGTCAAGTTATCCGTTGATTTTAAACTTGTTATGCTTTTTTTGTGTGCTTATTTTGTGAACCGATCATGTGATTTGTGAATTTGACCATCAATTGAGTTGTGATGGTATGTTTGGGTACTAGTTTGGTTTAGTCTGGAGAAATGAATTCATCATTGTTCAACTTATTGGTGCTTGTGAAATACTTCAATTATGTCGGTGGTTTGCTTTATTCCTATTTTATAATGTTGAATGTTTACTAGACATATAGTAAATTGTGTTTAGATTTTTTGGTAGATGTTCAAAGTTAAACACTTATAGGTTACATTCTTCTTGTTTATACATTTACAGGTTACATTGGAGGCAGAAGTCACAAATAAAGGAGCACTTGCTCTGTATGGCCGCCTTGGCTTTATTAGGGCTAAGCGGCTTTTTCACTACTATTTGAATGGAGTCGATGCTTTCCGTCTTAAACTTTTATTTCCTCGTCCAGACTTGCACGCACCTCTAGACTCACCGGATAAATACGGGAGCCACATGCATAGTGATCGTGGCGATTCACTTATTGAGCAATGA

Protein sequence

>MS.gene033722.t1

METPNKDETEISKVEFNDSEIEYISYGGEHHLPLIMNLVDEELSEPYSIFTYRYFVYLWPHLSFLAFHKGKCVGTVVCKMGEHRSTFRGYIAMLVVIKPYRGRGIATELVTRSIKVMMESGCDEVTLEAEVTNKGALALYGRLGFIRAKRLFHYYLNGVDAFRLKLLFPRPDLHAPLDSPDKYGSHMHSDRGDSLIEQ