AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene033845

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene033845.t1 MTR_8g017210 32.738 168 98 6 83 250 75 227 1.01e-20 92.0
MS.gene033845.t1 MTR_2g093960 30.102 196 122 6 83 278 45 225 2.00e-20 90.5
MS.gene033845.t1 MTR_1g093095 36.054 147 88 5 101 244 117 260 2.16e-20 89.0
MS.gene033845.t1 MTR_4g059870 32.203 177 105 6 78 254 46 207 2.91e-20 90.5
MS.gene033845.t1 MTR_2g099990 31.214 173 104 6 83 255 59 216 2.97e-19 87.4
MS.gene033845.t1 MTR_1g112270 31.373 153 94 5 78 230 52 193 1.74e-18 85.5
MS.gene033845.t1 MTR_1g016010 34.839 155 90 6 77 230 47 191 2.16e-18 85.1
MS.gene033845.t1 MTR_2g090745 33.987 153 90 5 78 230 15 156 3.33e-18 84.3
MS.gene033845.t1 MTR_1g112270 31.081 148 91 5 83 230 68 204 7.13e-18 84.0
MS.gene033845.t1 MTR_2g099990 32.099 162 95 6 94 255 1 147 1.22e-17 82.4
MS.gene033845.t1 MTR_1g094115 32.680 153 92 5 78 230 55 196 1.55e-17 82.8
MS.gene033845.t1 MTR_1g094115 34.351 131 75 5 100 230 60 179 2.40e-15 76.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene033845.t1 AT1G34370 51.913 183 82 3 84 261 19 200 1.60e-64 204
MS.gene033845.t1 AT1G34370 51.913 183 82 3 84 261 229 410 2.90e-63 207
MS.gene033845.t1 AT1G34370 51.913 183 82 3 84 261 229 410 2.90e-63 207
MS.gene033845.t1 AT5G22890 48.768 203 99 2 52 250 170 371 2.80e-62 201
MS.gene033845.t1 AT5G60470 33.333 156 92 5 75 230 51 194 4.53e-21 92.8
MS.gene033845.t1 AT1G13290 36.735 147 88 4 101 245 103 246 5.11e-21 90.9
MS.gene033845.t1 AT5G60470 33.333 156 92 5 75 230 47 190 5.44e-21 92.4
MS.gene033845.t1 AT1G08290 37.589 141 82 5 101 239 182 318 8.29e-21 90.9
MS.gene033845.t1 AT5G66730 35.135 148 85 5 83 230 45 181 8.79e-21 92.0
MS.gene033845.t1 AT5G60470 32.886 149 90 4 82 230 47 185 9.46e-21 92.0
MS.gene033845.t1 AT5G44160 33.784 148 87 5 83 230 11 147 1.61e-20 90.9
MS.gene033845.t1 AT5G44160 33.784 148 87 5 83 230 50 186 1.68e-20 91.3
MS.gene033845.t1 AT3G45260 30.814 172 105 5 83 254 52 209 1.74e-20 91.3
MS.gene033845.t1 AT3G45260 30.814 172 105 5 83 254 52 209 1.74e-20 91.3
MS.gene033845.t1 AT1G51220 37.838 148 85 5 101 246 180 322 2.01e-20 89.7
MS.gene033845.t1 AT5G03150 34.932 146 85 4 85 230 68 203 2.78e-20 90.9
MS.gene033845.t1 AT1G03840 33.775 151 89 5 80 230 49 188 2.95e-20 90.9
MS.gene033845.t1 AT3G20880 35.849 159 95 5 101 257 258 411 4.27e-20 89.7
MS.gene033845.t1 AT1G03840 33.784 148 87 5 83 230 54 190 8.19e-20 89.4
MS.gene033845.t1 AT3G50700 34.911 169 93 7 62 230 32 183 8.63e-20 89.0
MS.gene033845.t1 AT1G55110 31.737 167 100 5 83 249 76 228 2.07e-19 88.2
MS.gene033845.t1 AT1G55110 31.737 167 100 5 83 249 76 228 2.07e-19 88.2
MS.gene033845.t1 AT1G55110 31.737 167 100 5 83 249 76 228 2.07e-19 88.2
MS.gene033845.t1 AT3G13810 33.784 148 88 4 83 230 83 220 8.29e-19 86.7
MS.gene033845.t1 AT3G13810 33.784 148 88 4 83 230 83 220 8.29e-19 86.7
MS.gene033845.t1 AT3G13810 33.784 148 88 4 83 230 78 215 1.00e-18 86.3
MS.gene033845.t1 AT3G13810 33.784 148 88 4 83 230 64 201 1.05e-18 86.3
MS.gene033845.t1 AT3G13810 33.784 148 88 4 83 230 84 221 1.08e-18 86.3
MS.gene033845.t1 AT3G13810 33.784 148 88 4 83 230 70 207 1.25e-18 85.9
MS.gene033845.t1 AT2G02080 30.000 190 112 8 75 260 61 233 1.66e-18 85.5
MS.gene033845.t1 AT2G02080 30.000 190 112 8 75 260 61 233 1.66e-18 85.5
MS.gene033845.t1 AT2G02080 30.000 190 112 8 75 260 61 233 1.66e-18 85.5
MS.gene033845.t1 AT2G02080 30.000 190 112 8 75 260 61 233 1.66e-18 85.5
MS.gene033845.t1 AT2G02070 31.373 153 94 5 78 230 60 201 1.67e-18 85.9
MS.gene033845.t1 AT2G02070 31.373 153 94 5 78 230 60 201 1.67e-18 85.9
MS.gene033845.t1 AT1G34790 33.533 167 100 7 92 252 137 298 2.38e-18 83.6
MS.gene033845.t1 AT4G02670 34.459 148 87 5 83 230 68 205 4.15e-18 84.0
MS.gene033845.t1 AT4G02670 34.459 148 87 5 83 230 66 203 4.74e-18 84.0
MS.gene033845.t1 AT1G14580 31.410 156 94 6 75 230 60 202 5.94e-18 84.0
MS.gene033845.t1 AT1G14580 31.410 156 94 6 75 230 60 202 5.94e-18 84.0
MS.gene033845.t1 AT1G14580 31.410 156 94 6 75 230 74 216 6.05e-18 84.0
MS.gene033845.t1 AT3G57670 35.172 145 87 5 101 243 219 358 7.33e-18 83.2
MS.gene033845.t1 AT2G01940 35.849 159 81 8 78 230 52 195 1.24e-16 79.7
MS.gene033845.t1 AT1G25250 34.899 149 87 5 83 230 46 185 2.03e-16 79.0
MS.gene033845.t1 AT1G25250 34.899 149 87 5 83 230 23 162 2.09e-16 79.0
MS.gene033845.t1 AT2G02080 29.825 171 101 7 94 260 1 156 3.46e-16 78.6
MS.gene033845.t1 AT2G02080 29.825 171 101 7 94 260 1 156 3.46e-16 78.6
MS.gene033845.t1 AT1G68130 34.416 154 90 5 78 230 49 192 4.91e-16 78.2
MS.gene033845.t1 AT2G01940 34.483 145 78 7 78 218 52 183 1.19e-13 71.2

Find 72 sgRNAs with CRISPR-Local

Find 83 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGATGATTTGGATAAATTT+TGG 0.104736 2.2:+37978115 MS.gene033845:CDS
AGAGGAATTGTTATTGTTTC+TGG 0.129355 2.2:-37977427 None:intergenic
TCTGTTTGAGGAACCATTTC+AGG 0.237130 2.2:+37977788 MS.gene033845:CDS
GGAAGGTTTCTTTGATGATT+TGG 0.263746 2.2:+37978104 MS.gene033845:CDS
CATGTCATCGTCAATGTAAT+TGG 0.286361 2.2:-37977482 None:intergenic
TCCACTTCTGCCAGATTTGC+GGG 0.292814 2.2:+37977575 MS.gene033845:CDS
TTCCTCTAACCGAGTGTTAC+TGG 0.299972 2.2:+37977443 MS.gene033845:CDS
TGCGTCGAGTTCCACAATTT+TGG 0.303992 2.2:-37977530 None:intergenic
ATGAAGGTTGCAAACGTAAC+AGG 0.321705 2.2:+37977731 MS.gene033845:CDS
AGTGAGTCTAAGTGTTGTTT+GGG 0.344560 2.2:-37977337 None:intergenic
TGAAACCTTTCCCGCAAATC+TGG 0.354161 2.2:-37977585 None:intergenic
GACAATGACTTCTCCTGAAA+TGG 0.358889 2.2:-37977801 None:intergenic
TCTAGGAAGGAGAAATTGTT+TGG 0.374626 2.2:+37977946 MS.gene033845:CDS
GACGAATTGTGGAGGAGATT+TGG 0.390719 2.2:-37977366 None:intergenic
GTCCAGTAACACTCGGTTAG+AGG 0.391791 2.2:-37977445 None:intergenic
GAGAAGTGTGTTTGTTTGAA+TGG 0.397224 2.2:-37977314 None:intergenic
TGAAAACGGTGTTCTGTTTG+AGG 0.428042 2.2:+37977776 MS.gene033845:CDS
GAGTGAGTCTAAGTGTTGTT+TGG 0.432423 2.2:-37977338 None:intergenic
GACGGCGGCGCCGGCAGAAG+AGG 0.442327 2.2:+37978029 MS.gene033845:CDS
TTACGTTTGCAACCTTCATA+AGG 0.442930 2.2:-37977727 None:intergenic
GGAAAAGCAAACGCGTTTAA+CGG 0.444557 2.2:+37977687 MS.gene033845:CDS
TGTGTTTGTTTGAATGGATT+GGG 0.447482 2.2:-37977308 None:intergenic
TTCCACTTCTGCCAGATTTG+CGG 0.449481 2.2:+37977574 MS.gene033845:CDS
TTCTGCCAGATTTGCGGGAA+AGG 0.458821 2.2:+37977580 MS.gene033845:CDS
GGACACGTGGAGCGGTTTGA+AGG 0.462859 2.2:+37977967 MS.gene033845:CDS
GTGTGTTTGTTTGAATGGAT+TGG 0.474691 2.2:-37977309 None:intergenic
AATTGTGGAGGAGATTTGGT+TGG 0.477694 2.2:-37977362 None:intergenic
TGATTGCATAGATACGTTAC+CGG 0.493467 2.2:+37978083 MS.gene033845:CDS
AAAATCAATGACGGCGGCGC+CGG 0.497008 2.2:+37978020 MS.gene033845:CDS
AAAATTCAATCCGTTGAAAA+CGG 0.500351 2.2:+37977762 MS.gene033845:CDS
TTGGAATGGTCGTTATGAGT+GGG 0.500470 2.2:-37977511 None:intergenic
CCCACACCTTCCTCTTCTGC+CGG 0.501400 2.2:-37978039 None:intergenic
AAATCATCAAAGAAACCTTC+CGG 0.527715 2.2:-37978102 None:intergenic
CCGGCGGTTGTTGAAGAGAA+AGG 0.528093 2.2:+37977997 MS.gene033845:CDS
GAGTCACGTGAAACAGTGTA+GGG 0.546406 2.2:+37977885 MS.gene033845:CDS
TCCCGCAAATCTGGCAGAAG+TGG 0.548763 2.2:-37977576 None:intergenic
GATGATGACTTGACGAATTG+TGG 0.554147 2.2:-37977377 None:intergenic
TGTTATTGTTTCTGGACAAG+TGG 0.555781 2.2:-37977419 None:intergenic
TAACGACCATTCCAAAATTG+TGG 0.557903 2.2:+37977519 MS.gene033845:CDS
CGTATGCACATGCGCGCGCA+CGG 0.560123 2.2:+37977625 MS.gene033845:CDS
GGAGAAATTGTTTGGACACG+TGG 0.562238 2.2:+37977954 MS.gene033845:CDS
CCGGCAGAAGAGGAAGGTGT+GGG 0.568129 2.2:+37978039 MS.gene033845:CDS
CAATTACATTGACGATGACA+TGG 0.570490 2.2:+37977483 MS.gene033845:CDS
CGAAAACTCACACGTGCGAT+CGG 0.572334 2.2:+37977824 MS.gene033845:CDS
CTCACACGTGCGATCGGTGT+CGG 0.577837 2.2:+37977830 MS.gene033845:CDS
TGCATAGATACGTTACCGGA+AGG 0.579492 2.2:+37978087 MS.gene033845:CDS
CTAACCGAGTGTTACTGGAC+AGG 0.583976 2.2:+37977448 MS.gene033845:CDS
GCCGGCAGAAGAGGAAGGTG+TGG 0.587117 2.2:+37978038 MS.gene033845:CDS
CCTTTCTCTTCAACAACCGC+CGG 0.591632 2.2:-37977997 None:intergenic
TTTGGAATGGTCGTTATGAG+TGG 0.596386 2.2:-37977512 None:intergenic
AGAGTCACGTGAAACAGTGT+AGG 0.598901 2.2:+37977884 MS.gene033845:CDS
GCGGCGCCGGCAGAAGAGGA+AGG 0.609998 2.2:+37978033 MS.gene033845:CDS
GCGGTTTGAAGGACACTCGC+CGG 0.611639 2.2:+37977978 MS.gene033845:CDS
TCCACGTGGAAGTGTTCGTG+TGG 0.623338 2.2:+37977913 MS.gene033845:CDS
GCAGAAGAGGAAGGTGTGGG+TGG 0.627397 2.2:+37978042 MS.gene033845:CDS
ACCACCTGTCCAGTAACACT+CGG 0.629446 2.2:-37977452 None:intergenic
ATGAAGCGTTACGTAGCGTG+AGG 0.636493 2.2:+37977665 MS.gene033845:CDS
AATTGTGGAACTCGACGCAG+TGG 0.638379 2.2:+37977534 MS.gene033845:CDS
TTTCTCCTTCCTAGAAAACG+TGG 0.641293 2.2:-37977938 None:intergenic
AATTGTTTGGACACGTGGAG+CGG 0.644804 2.2:+37977959 MS.gene033845:CDS
GTTTGAAGGACACTCGCCGG+CGG 0.649562 2.2:+37977981 MS.gene033845:CDS
ACCGAGTGTTACTGGACAGG+TGG 0.651000 2.2:+37977451 MS.gene033845:CDS
ACACGTGCGATCGGTGTCGG+AGG 0.660805 2.2:+37977833 MS.gene033845:CDS
AGAGAAAGGAAAATCAATGA+CGG 0.662591 2.2:+37978011 MS.gene033845:CDS
TGAAGCGTTACGTAGCGTGA+GGG 0.667496 2.2:+37977666 MS.gene033845:CDS
GAAAGGAAAATCAATGACGG+CGG 0.669060 2.2:+37978014 MS.gene033845:CDS
GCGCGCGCATGTGCATACGT+AGG 0.669149 2.2:-37977621 None:intergenic
GTGAGTCTAAGTGTTGTTTG+GGG 0.679107 2.2:-37977336 None:intergenic
AGTGTAGGGGAGAGTCCACG+TGG 0.705085 2.2:+37977899 MS.gene033845:CDS
GATGACTTGACGAATTGTGG+AGG 0.731309 2.2:-37977374 None:intergenic
AGTCACGTGAAACAGTGTAG+GGG 0.737402 2.2:+37977886 MS.gene033845:CDS
TCCACACGAACACTTCCACG+TGG 0.747159 2.2:-37977914 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGATGATTTGGATAAATTTT+GGG + chr2.2:37978116-37978135 MS.gene033845:CDS 20.0%
!!! TTGATGATTTGGATAAATTT+TGG + chr2.2:37978115-37978134 MS.gene033845:CDS 20.0%
! AAAATTCAATCCGTTGAAAA+CGG + chr2.2:37977762-37977781 MS.gene033845:CDS 25.0%
AAATCATCAAAGAAACCTTC+CGG - chr2.2:37978105-37978124 None:intergenic 30.0%
AGAGAAAGGAAAATCAATGA+CGG + chr2.2:37978011-37978030 MS.gene033845:CDS 30.0%
! AGAGGAATTGTTATTGTTTC+TGG - chr2.2:37977430-37977449 None:intergenic 30.0%
! TGTGTTTGTTTGAATGGATT+GGG - chr2.2:37977311-37977330 None:intergenic 30.0%
CAATTACATTGACGATGACA+TGG + chr2.2:37977483-37977502 MS.gene033845:CDS 35.0%
CATGTCATCGTCAATGTAAT+TGG - chr2.2:37977485-37977504 None:intergenic 35.0%
GTGTGTTTGTTTGAATGGAT+TGG - chr2.2:37977312-37977331 None:intergenic 35.0%
TAACGACCATTCCAAAATTG+TGG + chr2.2:37977519-37977538 MS.gene033845:CDS 35.0%
TCTAGGAAGGAGAAATTGTT+TGG + chr2.2:37977946-37977965 MS.gene033845:CDS 35.0%
TGATTGCATAGATACGTTAC+CGG + chr2.2:37978083-37978102 MS.gene033845:CDS 35.0%
TTACGTTTGCAACCTTCATA+AGG - chr2.2:37977730-37977749 None:intergenic 35.0%
! AAACAGAACACCGTTTTCAA+CGG - chr2.2:37977775-37977794 None:intergenic 35.0%
! CGATTTTCTTGTCCTTATGA+AGG + chr2.2:37977715-37977734 MS.gene033845:CDS 35.0%
! GAGAAGTGTGTTTGTTTGAA+TGG - chr2.2:37977317-37977336 None:intergenic 35.0%
! GGAAGGTTTCTTTGATGATT+TGG + chr2.2:37978104-37978123 MS.gene033845:CDS 35.0%
!! AGTGAGTCTAAGTGTTGTTT+GGG - chr2.2:37977340-37977359 None:intergenic 35.0%
!! TGTTATTGTTTCTGGACAAG+TGG - chr2.2:37977422-37977441 None:intergenic 35.0%
ATGAAGGTTGCAAACGTAAC+AGG + chr2.2:37977731-37977750 MS.gene033845:CDS 40.0%
GAAAGGAAAATCAATGACGG+CGG + chr2.2:37978014-37978033 MS.gene033845:CDS 40.0%
GACAATGACTTCTCCTGAAA+TGG - chr2.2:37977804-37977823 None:intergenic 40.0%
GATGATGACTTGACGAATTG+TGG - chr2.2:37977380-37977399 None:intergenic 40.0%
GGAAAAGCAAACGCGTTTAA+CGG + chr2.2:37977687-37977706 MS.gene033845:CDS 40.0%
TCTGTTTGAGGAACCATTTC+AGG + chr2.2:37977788-37977807 MS.gene033845:CDS 40.0%
TGAAAACGGTGTTCTGTTTG+AGG + chr2.2:37977776-37977795 MS.gene033845:CDS 40.0%
TTGGAATGGTCGTTATGAGT+GGG - chr2.2:37977514-37977533 None:intergenic 40.0%
TTTCTCCTTCCTAGAAAACG+TGG - chr2.2:37977941-37977960 None:intergenic 40.0%
! AATTGTGGAGGAGATTTGGT+TGG - chr2.2:37977365-37977384 None:intergenic 40.0%
! GAGTGAGTCTAAGTGTTGTT+TGG - chr2.2:37977341-37977360 None:intergenic 40.0%
! TTTGGAATGGTCGTTATGAG+TGG - chr2.2:37977515-37977534 None:intergenic 40.0%
!! CGAGTTCCACAATTTTGGAA+TGG - chr2.2:37977528-37977547 None:intergenic 40.0%
!! GTGAGTCTAAGTGTTGTTTG+GGG - chr2.2:37977339-37977358 None:intergenic 40.0%
!!! TGTGGGTGGATTTTTTACGA+AGG + chr2.2:37978056-37978075 MS.gene033845:CDS 40.0%
AATTGTTTGGACACGTGGAG+CGG + chr2.2:37977959-37977978 MS.gene033845:CDS 45.0%
AGAGTCACGTGAAACAGTGT+AGG + chr2.2:37977884-37977903 MS.gene033845:CDS 45.0%
AGTCACGTGAAACAGTGTAG+GGG + chr2.2:37977886-37977905 MS.gene033845:CDS 45.0%
GACGAATTGTGGAGGAGATT+TGG - chr2.2:37977369-37977388 None:intergenic 45.0%
GAGTCACGTGAAACAGTGTA+GGG + chr2.2:37977885-37977904 MS.gene033845:CDS 45.0%
GATGACTTGACGAATTGTGG+AGG - chr2.2:37977377-37977396 None:intergenic 45.0%
GGAGAAATTGTTTGGACACG+TGG + chr2.2:37977954-37977973 MS.gene033845:CDS 45.0%
TGAAACCTTTCCCGCAAATC+TGG - chr2.2:37977588-37977607 None:intergenic 45.0%
TGCATAGATACGTTACCGGA+AGG + chr2.2:37978087-37978106 MS.gene033845:CDS 45.0%
TTCCACTTCTGCCAGATTTG+CGG + chr2.2:37977574-37977593 MS.gene033845:CDS 45.0%
TTCCTCTAACCGAGTGTTAC+TGG + chr2.2:37977443-37977462 MS.gene033845:CDS 45.0%
! TGCGTCGAGTTCCACAATTT+TGG - chr2.2:37977533-37977552 None:intergenic 45.0%
!! TGGAACCACGTTTTCTAGGA+AGG + chr2.2:37977933-37977952 MS.gene033845:CDS 45.0%
AATTGTGGAACTCGACGCAG+TGG + chr2.2:37977534-37977553 MS.gene033845:CDS 50.0%
ACCACCTGTCCAGTAACACT+CGG - chr2.2:37977455-37977474 None:intergenic 50.0%
CCTTTCTCTTCAACAACCGC+CGG - chr2.2:37978000-37978019 None:intergenic 50.0%
CGAAAACTCACACGTGCGAT+CGG + chr2.2:37977824-37977843 MS.gene033845:CDS 50.0%
GTCCAGTAACACTCGGTTAG+AGG - chr2.2:37977448-37977467 None:intergenic 50.0%
TCCACTTCTGCCAGATTTGC+GGG + chr2.2:37977575-37977594 MS.gene033845:CDS 50.0%
TTCTGCCAGATTTGCGGGAA+AGG + chr2.2:37977580-37977599 MS.gene033845:CDS 50.0%
! ATGAAGCGTTACGTAGCGTG+AGG + chr2.2:37977665-37977684 MS.gene033845:CDS 50.0%
! CGATCGCACGTGTGAGTTTT+CGG - chr2.2:37977826-37977845 None:intergenic 50.0%
! CGTGTGGAACCACGTTTTCT+AGG + chr2.2:37977929-37977948 MS.gene033845:CDS 50.0%
! CTAACCGAGTGTTACTGGAC+AGG + chr2.2:37977448-37977467 MS.gene033845:CDS 50.0%
! GAAGAGTTTTGCGGTGGTGT+CGG + chr2.2:37977855-37977874 MS.gene033845:CDS 50.0%
! GTGTCGGAGGAAGAGTTTTG+CGG + chr2.2:37977846-37977865 MS.gene033845:CDS 50.0%
! TGAAGCGTTACGTAGCGTGA+GGG + chr2.2:37977666-37977685 MS.gene033845:CDS 50.0%
AAAATCAATGACGGCGGCGC+CGG + chr2.2:37978020-37978039 MS.gene033845:CDS 55.0%
CCGGCGGTTGTTGAAGAGAA+AGG + chr2.2:37977997-37978016 MS.gene033845:CDS 55.0%
TCCACACGAACACTTCCACG+TGG - chr2.2:37977917-37977936 None:intergenic 55.0%
TCCCGCAAATCTGGCAGAAG+TGG - chr2.2:37977579-37977598 None:intergenic 55.0%
! ACCGAGTGTTACTGGACAGG+TGG + chr2.2:37977451-37977470 MS.gene033845:CDS 55.0%
! TCGGAGGAAGAGTTTTGCGG+TGG + chr2.2:37977849-37977868 MS.gene033845:CDS 55.0%
!! TCCACGTGGAAGTGTTCGTG+TGG + chr2.2:37977913-37977932 MS.gene033845:CDS 55.0%
AGTGTAGGGGAGAGTCCACG+TGG + chr2.2:37977899-37977918 MS.gene033845:CDS 60.0%
CCCACACCTTCCTCTTCTGC+CGG - chr2.2:37978042-37978061 None:intergenic 60.0%
CTCACACGTGCGATCGGTGT+CGG + chr2.2:37977830-37977849 MS.gene033845:CDS 60.0%
GCGGTTTGAAGGACACTCGC+CGG + chr2.2:37977978-37977997 MS.gene033845:CDS 60.0%
GGACACGTGGAGCGGTTTGA+AGG + chr2.2:37977967-37977986 MS.gene033845:CDS 60.0%
GTTTGAAGGACACTCGCCGG+CGG + chr2.2:37977981-37978000 MS.gene033845:CDS 60.0%
! CCGGCAGAAGAGGAAGGTGT+GGG + chr2.2:37978039-37978058 MS.gene033845:CDS 60.0%
! GCAGAAGAGGAAGGTGTGGG+TGG + chr2.2:37978042-37978061 MS.gene033845:CDS 60.0%
CGTATGCACATGCGCGCGCA+CGG + chr2.2:37977625-37977644 MS.gene033845:CDS 65.0%
GCCGGCAGAAGAGGAAGGTG+TGG + chr2.2:37978038-37978057 MS.gene033845:CDS 65.0%
GCGCGCGCATGTGCATACGT+AGG - chr2.2:37977624-37977643 None:intergenic 65.0%
!! ACACGTGCGATCGGTGTCGG+AGG + chr2.2:37977833-37977852 MS.gene033845:CDS 65.0%
!! GCGGCGCCGGCAGAAGAGGA+AGG + chr2.2:37978033-37978052 MS.gene033845:CDS 75.0%
!!! GACGGCGGCGCCGGCAGAAG+AGG + chr2.2:37978029-37978048 MS.gene033845:CDS 80.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 37977283 37978143 37977283 ID=MS.gene033845
chr2.2 mRNA 37977283 37978143 37977283 ID=MS.gene033845.t1;Parent=MS.gene033845
chr2.2 exon 37977283 37978143 37977283 ID=MS.gene033845.t1.exon1;Parent=MS.gene033845.t1
chr2.2 CDS 37977283 37978143 37977283 ID=cds.MS.gene033845.t1;Parent=MS.gene033845.t1
Gene Sequence

>MS.gene033845

ATGGATTCTATTCAAAGCTTCATATCCCAATCCATTCAAACAAACACACTTCTCCCCAAACAACACTTAGACTCACTCTCCAACCAAATCTCCTCCACAATTCGTCAAGTCATCATCAACGCAACTGCTCTTCTCGCCACTTGTCCAGAAACAATAACAATTCCTCTAACCGAGTGTTACTGGACAGGTGGTGAGAAAACCAATTACATTGACGATGACATGGCAAATCCCACTCATAACGACCATTCCAAAATTGTGGAACTCGACGCAGTGGAACTGCTTGCGAAGCACTTCCACTTCTGCCAGATTTGCGGGAAAGGTTTCACGCGCGATGCAAACCTACGTATGCACATGCGCGCGCACGGAGAACAGTTCAAGACACATGAAGCGTTACGTAGCGTGAGGGAAAAGCAAACGCGTTTAACGGCGACGCGATTTTCTTGTCCTTATGAAGGTTGCAAACGTAACAGGTTACACAAAAAATTCAATCCGTTGAAAACGGTGTTCTGTTTGAGGAACCATTTCAGGAGAAGTCATTGTCCGAAAACTCACACGTGCGATCGGTGTCGGAGGAAGAGTTTTGCGGTGGTGTCGGATTTGAAGAGTCACGTGAAACAGTGTAGGGGAGAGTCCACGTGGAAGTGTTCGTGTGGAACCACGTTTTCTAGGAAGGAGAAATTGTTTGGACACGTGGAGCGGTTTGAAGGACACTCGCCGGCGGTTGTTGAAGAGAAAGGAAAATCAATGACGGCGGCGCCGGCAGAAGAGGAAGGTGTGGGTGGATTTTTTACGAAGGAAAATGATTGCATAGATACGTTACCGGAAGGTTTCTTTGATGATTTGGATAAATTTTGGGTTTGA
Protein sequence

>MS.gene033845.t1

MDSIQSFISQSIQTNTLLPKQHLDSLSNQISSTIRQVIINATALLATCPETITIPLTECYWTGGEKTNYIDDDMANPTHNDHSKIVELDAVELLAKHFHFCQICGKGFTRDANLRMHMRAHGEQFKTHEALRSVREKQTRLTATRFSCPYEGCKRNRLHKKFNPLKTVFCLRNHFRRSHCPKTHTCDRCRRKSFAVVSDLKSHVKQCRGESTWKCSCGTTFSRKEKLFGHVERFEGHSPAVVEEKGKSMTAAPAEEEGVGGFFTKENDCIDTLPEGFFDDLDKFWV