AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene033871

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene033871.t1 MTR_6g051425 29.455 275 177 6 50 311 19 289 3.67e-35 133
MS.gene033871.t1 MTR_0856s0010 43.023 172 84 4 3 173 2 160 3.37e-34 125
MS.gene033871.t1 MTR_4g035820 30.272 294 179 12 9 286 39 322 1.40e-24 106
MS.gene033871.t1 MTR_0558s0020 25.000 288 182 8 30 283 8 295 2.97e-22 96.7
MS.gene033871.t1 MTR_1g070355 28.627 255 167 7 54 298 80 329 5.46e-22 98.6
MS.gene033871.t1 MTR_7g446060 51.220 82 40 0 130 211 7 88 1.76e-20 87.4
MS.gene033871.t1 MTR_3g450850 26.829 287 191 8 2 272 3 286 3.00e-18 85.9
MS.gene033871.t1 MTR_8g446020 24.681 235 156 4 52 283 39 255 9.35e-18 82.8
MS.gene033871.t1 MTR_1g008290 32.331 133 88 1 108 240 14 144 4.57e-17 78.2
MS.gene033871.t1 MTR_7g446520 25.847 236 162 2 52 286 92 315 1.17e-16 80.9
MS.gene033871.t1 MTR_7g446480 31.395 172 117 1 122 292 143 314 1.64e-16 80.5
MS.gene033871.t1 MTR_7g446510 31.928 166 112 1 128 292 164 329 9.43e-16 78.2
MS.gene033871.t1 MTR_7g115320 61.111 54 18 1 137 190 9 59 6.41e-15 70.1
MS.gene033871.t1 MTR_1g083640 22.794 272 176 8 18 255 11 282 1.05e-14 74.7
MS.gene033871.t1 MTR_1g019850 30.303 165 98 6 17 175 43 196 1.60e-14 73.2
MS.gene033871.t1 MTR_3g012160 41.975 81 46 1 193 273 14 93 7.45e-14 67.4
MS.gene033871.t1 MTR_5g076070 23.552 259 185 7 23 272 28 282 1.68e-13 70.9
MS.gene033871.t1 MTR_6g090505 24.103 195 145 2 109 300 53 247 3.09e-13 70.9
MS.gene033871.t1 MTR_5g023310 28.205 156 45 2 179 334 16 104 8.89e-13 64.7
MS.gene033871.t1 MTR_0402s0040 25.140 179 129 3 48 221 26 204 3.65e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene033871.t1 AT4G38180 33.412 425 262 8 8 420 38 453 1.02e-75 251
MS.gene033871.t1 AT4G15090 35.171 381 237 6 48 420 51 429 1.03e-72 244
MS.gene033871.t1 AT4G15090 35.171 381 237 6 48 420 51 429 1.03e-72 244
MS.gene033871.t1 AT4G15090 35.171 381 237 6 48 420 51 429 1.03e-72 244
MS.gene033871.t1 AT4G15090 35.171 381 237 6 48 420 51 429 1.03e-72 244
MS.gene033871.t1 AT4G15090 35.171 381 237 6 48 420 51 429 1.03e-72 244
MS.gene033871.t1 AT1G52520 32.152 395 250 8 33 420 66 449 7.19e-68 228
MS.gene033871.t1 AT3G22170 30.607 428 248 9 18 420 35 438 4.31e-65 223
MS.gene033871.t1 AT3G22170 30.607 428 248 9 18 420 35 438 4.31e-65 223
MS.gene033871.t1 AT2G27110 33.508 382 211 9 48 418 49 398 5.70e-63 218
MS.gene033871.t1 AT2G27110 33.508 382 211 9 48 418 49 398 5.70e-63 218
MS.gene033871.t1 AT1G80010 32.250 400 244 8 39 419 82 473 1.30e-61 212
MS.gene033871.t1 AT1G76320 31.367 373 243 6 52 419 1 365 1.75e-61 211
MS.gene033871.t1 AT1G76320 31.367 373 243 6 52 419 1 365 3.43e-61 211
MS.gene033871.t1 AT1G76320 31.367 373 243 6 52 419 1 365 3.95e-61 211
MS.gene033871.t1 AT1G76320 31.367 373 243 6 52 419 1 365 3.95e-61 211
MS.gene033871.t1 AT3G06250 32.626 377 210 9 48 420 190 526 4.75e-59 206
MS.gene033871.t1 AT3G06250 32.626 377 210 9 48 420 190 526 4.75e-59 206
MS.gene033871.t1 AT3G06250 32.626 377 210 9 48 420 190 526 4.75e-59 206
MS.gene033871.t1 AT2G27110 40.000 250 137 4 172 418 14 253 5.22e-57 199
MS.gene033871.t1 AT5G18960 31.658 398 226 11 28 419 192 549 2.19e-54 193
MS.gene033871.t1 AT5G18960 31.658 398 226 11 28 419 192 549 2.19e-54 193
MS.gene033871.t1 AT2G32250 38.889 198 120 1 224 420 135 332 1.91e-47 173
MS.gene033871.t1 AT2G32250 38.889 198 120 1 224 420 176 373 1.93e-47 173
MS.gene033871.t1 AT2G32250 38.889 198 120 1 224 420 135 332 1.96e-47 173
MS.gene033871.t1 AT2G32250 38.889 198 120 1 224 420 176 373 2.17e-47 174
MS.gene033871.t1 AT2G32250 38.889 198 120 1 224 420 176 373 2.17e-47 174
MS.gene033871.t1 AT2G32250 38.889 198 120 1 224 420 176 373 2.40e-47 173
MS.gene033871.t1 AT2G32250 38.889 198 120 1 224 420 176 373 2.40e-47 173
MS.gene033871.t1 AT2G32250 38.889 198 120 1 224 420 176 373 2.40e-47 173
MS.gene033871.t1 AT4G19990 30.280 393 210 10 51 419 24 376 9.64e-46 169
MS.gene033871.t1 AT4G19990 30.280 393 210 10 51 419 24 376 9.89e-46 168
MS.gene033871.t1 AT4G19990 30.280 393 210 10 51 419 24 376 9.89e-46 168
MS.gene033871.t1 AT4G19990 30.280 393 210 10 51 419 38 390 1.11e-45 168
MS.gene033871.t1 AT4G19990 30.280 393 210 10 51 419 24 376 1.30e-45 168
MS.gene033871.t1 AT4G19990 30.280 393 210 10 51 419 24 376 1.30e-45 168
MS.gene033871.t1 AT5G28530 30.311 386 236 8 46 405 53 431 1.50e-45 167
MS.gene033871.t1 AT5G28530 30.311 386 236 8 46 405 53 431 1.50e-45 167
MS.gene033871.t1 AT5G28530 30.311 386 236 8 46 405 53 431 2.11e-45 167
MS.gene033871.t1 AT4G19990 31.595 326 175 8 104 419 32 319 1.68e-41 156
MS.gene033871.t1 AT4G38170 37.624 202 120 3 221 420 21 218 1.11e-40 152
MS.gene033871.t1 AT1G10240 26.304 441 290 14 1 418 1 429 1.64e-40 153
MS.gene033871.t1 AT1G10240 26.304 441 290 14 1 418 1 429 1.64e-40 153
MS.gene033871.t1 AT5G28530 25.199 377 204 10 46 405 53 368 4.36e-24 105
MS.gene033871.t1 AT5G28530 25.199 377 204 10 46 405 53 368 4.78e-24 105

Find 92 sgRNAs with CRISPR-Local

Find 112 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTGTTGACGTTTCGGATTC+CGG 0.201943 2.2:-38416662 MS.gene033871:CDS
TCTTTCCCGCTCTTCGAAAA+TGG 0.249066 2.2:+38415500 None:intergenic
ACACTAACAAACGGGGAAAA+TGG 0.274846 2.2:+38415894 None:intergenic
GATCGCAAACCCTTGTTTCA+TGG 0.299904 2.2:+38416535 None:intergenic
AAGACCGCAACCTAGTAAAA+TGG 0.321194 2.2:+38415854 None:intergenic
GTGTTGACGTTTCGGATTCC+GGG 0.344560 2.2:-38416661 MS.gene033871:CDS
GGCTATGCAGAATGCAATTC+AGG 0.347065 2.2:-38415730 MS.gene033871:CDS
TTGCTTTAAAGAAGGGTCTA+TGG 0.361166 2.2:-38416364 MS.gene033871:CDS
ACTAAATCACGGTTGTTTGC+TGG 0.375082 2.2:-38416296 MS.gene033871:CDS
TGCTGCTCGTGTTGACGTTT+CGG 0.391419 2.2:-38416669 MS.gene033871:CDS
CACCACCTATGCCTAGTATT+AGG 0.393202 2.2:+38415699 None:intergenic
CTAGGCATAGGTGGTGTCTA+TGG 0.405638 2.2:-38415692 MS.gene033871:CDS
AAAGGATGATCGATCAATAT+AGG 0.415391 2.2:+38416722 None:intergenic
TTGGTGGTATGTTTGATTCA+TGG 0.433399 2.2:+38416438 None:intergenic
GCAAACAACCGTGATTTAGT+TGG 0.439208 2.2:+38416299 None:intergenic
GATGATTGACACTAACAAAC+GGG 0.445277 2.2:+38415886 None:intergenic
ATGGTTTGGGTGAAAATGAT+TGG 0.445440 2.2:-38415530 MS.gene033871:CDS
TTTGTTAGTGTCAATCATCA+TGG 0.451893 2.2:-38415882 MS.gene033871:CDS
GGCTAAGGTGTATGTCTTCG+AGG 0.457503 2.2:-38415785 MS.gene033871:CDS
TATCCTACTTTGCTAGAATG+AGG 0.459924 2.2:-38416073 MS.gene033871:CDS
AAAACTAGAAACTCTAAGAA+AGG 0.460549 2.2:-38416512 MS.gene033871:CDS
GTCATACTTGTTTGTCAAGT+AGG 0.465266 2.2:+38415920 None:intergenic
AGGTTGTGTTTCCTAATACT+AGG 0.465284 2.2:-38415710 MS.gene033871:CDS
CCATCAGCTAGCTCTCCGTC+AGG 0.466136 2.2:+38416692 None:intergenic
GCAAAAGAAAGACACCTTCT+CGG 0.472868 2.2:-38416122 MS.gene033871:CDS
GATAACGGTTGCTTTAAAGA+AGG 0.473052 2.2:-38416372 MS.gene033871:CDS
AACATCACCAAAGTATTCAT+AGG 0.473828 2.2:+38415959 None:intergenic
GAGCAATCAAGTTTCTTCGT+TGG 0.480101 2.2:+38416401 None:intergenic
CACTTATGCTCGATGGCTGA+TGG 0.482201 2.2:-38416749 None:intergenic
TCGGGAAGGAAGGAGATGGC+AGG 0.482875 2.2:-38416103 MS.gene033871:CDS
ATTTGTTGTTTCAAAGGTCC+CGG 0.485747 2.2:+38416643 None:intergenic
GACAGCATTTGTTGTTTCAA+AGG 0.491833 2.2:+38416637 None:intergenic
CTTGTTTCATGGCATATTCA+CGG 0.492232 2.2:+38416546 None:intergenic
CGTGAATATGCCATGAAACA+AGG 0.498225 2.2:-38416545 MS.gene033871:CDS
TTAAAAGACATACCGATAGT+AGG 0.501742 2.2:+38416596 None:intergenic
GTTGGATTCGTCTTCAAAGT+TGG 0.502236 2.2:+38416419 None:intergenic
CATCTCCTTCCTTCCCGAGA+AGG 0.502837 2.2:+38416108 None:intergenic
TTACCTGGTTGTTCGAAACA+TGG 0.503284 2.2:-38415806 MS.gene033871:CDS
TATGTCTTCGAGGCCTCCAA+TGG 0.508338 2.2:-38415775 MS.gene033871:CDS
TCGGTTACAATTCCCATTGG+AGG 0.511504 2.2:+38415762 None:intergenic
TTACGAAAATCTAACATTTG+TGG 0.512305 2.2:-38416168 MS.gene033871:CDS
AAACGATCAGGCAGGTGTAC+GGG 0.512319 2.2:-38416231 MS.gene033871:CDS
CGTTCCATGGTATGTGATGC+CGG 0.512631 2.2:-38416194 MS.gene033871:CDS
GAGAGATGTCAGAAACTTTG+TGG 0.514693 2.2:-38416144 MS.gene033871:CDS
TCTGGGCTGATGCACGTAGT+AGG 0.516810 2.2:-38415986 MS.gene033871:CDS
CAAAAGAAAGACACCTTCTC+GGG 0.517286 2.2:-38416121 MS.gene033871:CDS
TGATGATTGACACTAACAAA+CGG 0.519544 2.2:+38415885 None:intergenic
ATAACGGTTGCTTTAAAGAA+GGG 0.522275 2.2:-38416371 MS.gene033871:CDS
AAACTAGAAACTCTAAGAAA+GGG 0.523644 2.2:-38416511 MS.gene033871:CDS
TTCCCTCATTCTAGCAAAGT+AGG 0.524536 2.2:+38416070 None:intergenic
AACTCTAAGAAAGGGTCTGA+TGG 0.527361 2.2:-38416503 MS.gene033871:CDS
GAACAAAAGTTTCCGTTCCA+TGG 0.529264 2.2:-38416207 MS.gene033871:CDS
GGATTCGTCTTCAAAGTTGG+TGG 0.530111 2.2:+38416422 None:intergenic
TAAACGATCAGGCAGGTGTA+CGG 0.533293 2.2:-38416232 MS.gene033871:CDS
ATCCTACTTTGCTAGAATGA+GGG 0.537508 2.2:-38416072 MS.gene033871:CDS
TGATCGGTTACAATTCCCAT+TGG 0.541217 2.2:+38415759 None:intergenic
CATCAGCTAGCTCTCCGTCA+GGG 0.541329 2.2:+38416693 None:intergenic
CTGCATAGCCTTGCACTGAT+CGG 0.542185 2.2:+38415743 None:intergenic
CTATGAGATTGACATGGACG+AGG 0.547341 2.2:-38416030 MS.gene033871:CDS
TGATTGCTCAGCTAAGATAA+CGG 0.550952 2.2:-38416387 MS.gene033871:CDS
GATAAATTCACGCCTACTAT+CGG 0.551302 2.2:-38416608 MS.gene033871:CDS
ATTCTAACTTGTGCAAGAGA+AGG 0.552020 2.2:-38416464 MS.gene033871:CDS
AGGTCTGCCTATGAATACTT+TGG 0.552277 2.2:-38415966 MS.gene033871:CDS
AGACACCTTCTCGGGAAGGA+AGG 0.553011 2.2:-38416113 MS.gene033871:CDS
TGTTTCGAACAACCAGGTAA+AGG 0.558836 2.2:+38415809 None:intergenic
TTGTTAGTGTCAATCATCAT+GGG 0.566585 2.2:-38415881 MS.gene033871:CDS
GAACAACCAGGTAAAGGACT+TGG 0.570795 2.2:+38415815 None:intergenic
ATGTCTTCGAGGCCTCCAAT+GGG 0.571048 2.2:-38415774 MS.gene033871:CDS
TGTTTCCTAATACTAGGCAT+AGG 0.571109 2.2:-38415704 MS.gene033871:CDS
ATCAGCTAGCTCTCCGTCAG+GGG 0.582853 2.2:+38416694 None:intergenic
TTGTGTGTATGATTCTCTGC+GGG 0.590009 2.2:-38415595 MS.gene033871:CDS
GTGAATATGCCATGAAACAA+GGG 0.602322 2.2:-38416544 MS.gene033871:CDS
AGAAAGACACCTTCTCGGGA+AGG 0.609091 2.2:-38416117 MS.gene033871:CDS
ACCACCGGCATCACATACCA+TGG 0.613048 2.2:+38416190 None:intergenic
AAGATACCAAGTCCTTTACC+TGG 0.614091 2.2:-38415821 MS.gene033871:CDS
TTCCTAATACTAGGCATAGG+TGG 0.615209 2.2:-38415701 MS.gene033871:CDS
ATACTTGTTTGTCAAGTAGG+TGG 0.617215 2.2:+38415923 None:intergenic
GGTTGTTCGAAACATGGCTA+AGG 0.617470 2.2:-38415800 MS.gene033871:CDS
AATTGTAACCGATCAGTGCA+AGG 0.620761 2.2:-38415751 MS.gene033871:CDS
CGGGAAGGAAGGAGATGGCA+GGG 0.622349 2.2:-38416102 MS.gene033871:CDS
CCTGACGGAGAGCTAGCTGA+TGG 0.623440 2.2:-38416692 MS.gene033871:CDS
CGGCATCACATACCATGGAA+CGG 0.625469 2.2:+38416195 None:intergenic
TAGCCATGTTTCGAACAACC+AGG 0.627145 2.2:+38415803 None:intergenic
CTTCTCGGGAAGGAAGGAGA+TGG 0.631777 2.2:-38416107 MS.gene033871:CDS
AAAGGATACGCACAATACAA+AGG 0.637659 2.2:-38415639 MS.gene033871:CDS
GGATGATCGATCAATATAGG+AGG 0.639611 2.2:+38416725 None:intergenic
AGATAAGTCCAACTAAATCA+CGG 0.645312 2.2:-38416307 MS.gene033871:CDS
TCAGCTAGCTCTCCGTCAGG+GGG 0.662037 2.2:+38416695 None:intergenic
ATGATTGACACTAACAAACG+GGG 0.706562 2.2:+38415887 None:intergenic
ATTGTGTGTATGATTCTCTG+CGG 0.733784 2.2:-38415596 MS.gene033871:CDS
TCCATGGTATGTGATGCCGG+TGG 0.764195 2.2:-38416191 MS.gene033871:CDS
AGATTGATATGCATGCACAG+CGG 0.798983 2.2:-38416265 MS.gene033871:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAACATTCATTGAAAAATA+TGG - chr2.2:38416685-38416704 MS.gene033871:CDS 20.0%
!! ATTCATTGAAAAATATGGTT+TGG - chr2.2:38416690-38416709 MS.gene033871:CDS 20.0%
!! TTCATTGAAAAATATGGTTT+GGG - chr2.2:38416691-38416710 MS.gene033871:CDS 20.0%
! AAAATTGCCGAAAAATTGAA+AGG - chr2.2:38416577-38416596 MS.gene033871:CDS 25.0%
! TTACGAAAATCTAACATTTG+TGG - chr2.2:38416066-38416085 MS.gene033871:CDS 25.0%
!! AAAACTAGAAACTCTAAGAA+AGG - chr2.2:38415722-38415741 MS.gene033871:CDS 25.0%
!! AAACTAGAAACTCTAAGAAA+GGG - chr2.2:38415723-38415742 MS.gene033871:CDS 25.0%
!! TATCGGTATGTCTTTTAAAT+CGG - chr2.2:38415643-38415662 MS.gene033871:CDS 25.0%
AAAGGATGATCGATCAATAT+AGG + chr2.2:38415515-38415534 None:intergenic 30.0%
AGATAAGTCCAACTAAATCA+CGG - chr2.2:38415927-38415946 MS.gene033871:CDS 30.0%
TGATGATTGACACTAACAAA+CGG + chr2.2:38416352-38416371 None:intergenic 30.0%
TTAAAAGACATACCGATAGT+AGG + chr2.2:38415641-38415660 None:intergenic 30.0%
TTGTTAGTGTCAATCATCAT+GGG - chr2.2:38416353-38416372 MS.gene033871:CDS 30.0%
TTTGTTAGTGTCAATCATCA+TGG - chr2.2:38416352-38416371 MS.gene033871:CDS 30.0%
! AACATCACCAAAGTATTCAT+AGG + chr2.2:38416278-38416297 None:intergenic 30.0%
! CTTTTTCTATGAGATTGACA+TGG - chr2.2:38416198-38416217 MS.gene033871:CDS 30.0%
! TCATGTGCAGAATATTTTCT+GGG - chr2.2:38416231-38416250 MS.gene033871:CDS 30.0%
! TGCGTATCCTTTCAATTTTT+CGG + chr2.2:38416587-38416606 None:intergenic 30.0%
! TTCATGTGCAGAATATTTTC+TGG - chr2.2:38416230-38416249 MS.gene033871:CDS 30.0%
!! ATAACGGTTGCTTTAAAGAA+GGG - chr2.2:38415863-38415882 MS.gene033871:CDS 30.0%
!! GACAATTTTGATAAACGATC+AGG - chr2.2:38415991-38416010 MS.gene033871:CDS 30.0%
AAAGGATACGCACAATACAA+AGG - chr2.2:38416595-38416614 MS.gene033871:CDS 35.0%
AGGTTGTGTTTCCTAATACT+AGG - chr2.2:38416524-38416543 MS.gene033871:CDS 35.0%
ATACTTGTTTGTCAAGTAGG+TGG + chr2.2:38416314-38416333 None:intergenic 35.0%
ATCCTACTTTGCTAGAATGA+GGG - chr2.2:38416162-38416181 MS.gene033871:CDS 35.0%
ATGATTGACACTAACAAACG+GGG + chr2.2:38416350-38416369 None:intergenic 35.0%
ATTGTGTGTATGATTCTCTG+CGG - chr2.2:38416638-38416657 MS.gene033871:CDS 35.0%
CTTGTTTCATGGCATATTCA+CGG + chr2.2:38415691-38415710 None:intergenic 35.0%
GATAAATTCACGCCTACTAT+CGG - chr2.2:38415626-38415645 MS.gene033871:CDS 35.0%
GATGATTGACACTAACAAAC+GGG + chr2.2:38416351-38416370 None:intergenic 35.0%
GTCATACTTGTTTGTCAAGT+AGG + chr2.2:38416317-38416336 None:intergenic 35.0%
GTGAATATGCCATGAAACAA+GGG - chr2.2:38415690-38415709 MS.gene033871:CDS 35.0%
TATCCTACTTTGCTAGAATG+AGG - chr2.2:38416161-38416180 MS.gene033871:CDS 35.0%
TGATTGCTCAGCTAAGATAA+CGG - chr2.2:38415847-38415866 MS.gene033871:CDS 35.0%
TGTTTCCTAATACTAGGCAT+AGG - chr2.2:38416530-38416549 MS.gene033871:CDS 35.0%
! ATGGTTTGGGTGAAAATGAT+TGG - chr2.2:38416704-38416723 MS.gene033871:CDS 35.0%
! ATTCTAACTTGTGCAAGAGA+AGG - chr2.2:38415770-38415789 MS.gene033871:CDS 35.0%
! CAATCCATTTTACTAGGTTG+CGG - chr2.2:38416376-38416395 MS.gene033871:CDS 35.0%
! TGAATACCATTTTCGAAGAG+CGG - chr2.2:38416728-38416747 MS.gene033871:CDS 35.0%
! TGTTAGATTTTCGTAACCAC+CGG + chr2.2:38416062-38416081 None:intergenic 35.0%
! TTGGTGGTATGTTTGATTCA+TGG + chr2.2:38415799-38415818 None:intergenic 35.0%
!! ATTTGTTGTTTCAAAGGTCC+CGG + chr2.2:38415594-38415613 None:intergenic 35.0%
!! ATTTTGATAAACGATCAGGC+AGG - chr2.2:38415995-38416014 MS.gene033871:CDS 35.0%
!! GACAGCATTTGTTGTTTCAA+AGG + chr2.2:38415600-38415619 None:intergenic 35.0%
!! GATAACGGTTGCTTTAAAGA+AGG - chr2.2:38415862-38415881 MS.gene033871:CDS 35.0%
!! TTGCTTTAAAGAAGGGTCTA+TGG - chr2.2:38415870-38415889 MS.gene033871:CDS 35.0%
!!! GGGTTGATGATTTTGTTGTT+GGG - chr2.2:38416659-38416678 MS.gene033871:CDS 35.0%
!!! TTGATGATTTTGTTGTTGGG+TGG - chr2.2:38416662-38416681 MS.gene033871:CDS 35.0%
AAGACCGCAACCTAGTAAAA+TGG + chr2.2:38416383-38416402 None:intergenic 40.0%
AAGATACCAAGTCCTTTACC+TGG - chr2.2:38416413-38416432 MS.gene033871:CDS 40.0%
AATTGTAACCGATCAGTGCA+AGG - chr2.2:38416483-38416502 MS.gene033871:CDS 40.0%
ACACTAACAAACGGGGAAAA+TGG + chr2.2:38416343-38416362 None:intergenic 40.0%
ACTAAATCACGGTTGTTTGC+TGG - chr2.2:38415938-38415957 MS.gene033871:CDS 40.0%
AGATTGATATGCATGCACAG+CGG - chr2.2:38415969-38415988 MS.gene033871:CDS 40.0%
AGGTCTGCCTATGAATACTT+TGG - chr2.2:38416268-38416287 MS.gene033871:CDS 40.0%
CAAAAGAAAGACACCTTCTC+GGG - chr2.2:38416113-38416132 MS.gene033871:CDS 40.0%
CGTGAATATGCCATGAAACA+AGG - chr2.2:38415689-38415708 MS.gene033871:CDS 40.0%
GAACAAAAGTTTCCGTTCCA+TGG - chr2.2:38416027-38416046 MS.gene033871:CDS 40.0%
GAGAGATGTCAGAAACTTTG+TGG - chr2.2:38416090-38416109 MS.gene033871:CDS 40.0%
GAGCAATCAAGTTTCTTCGT+TGG + chr2.2:38415836-38415855 None:intergenic 40.0%
GCAAAAGAAAGACACCTTCT+CGG - chr2.2:38416112-38416131 MS.gene033871:CDS 40.0%
GCAAACAACCGTGATTTAGT+TGG + chr2.2:38415938-38415957 None:intergenic 40.0%
GGATGATCGATCAATATAGG+AGG + chr2.2:38415512-38415531 None:intergenic 40.0%
GTTGGATTCGTCTTCAAAGT+TGG + chr2.2:38415818-38415837 None:intergenic 40.0%
TGATCGGTTACAATTCCCAT+TGG + chr2.2:38416478-38416497 None:intergenic 40.0%
TGTTTCGAACAACCAGGTAA+AGG + chr2.2:38416428-38416447 None:intergenic 40.0%
TTACCTGGTTGTTCGAAACA+TGG - chr2.2:38416428-38416447 MS.gene033871:CDS 40.0%
TTCCCTCATTCTAGCAAAGT+AGG + chr2.2:38416167-38416186 None:intergenic 40.0%
TTCCTAATACTAGGCATAGG+TGG - chr2.2:38416533-38416552 MS.gene033871:CDS 40.0%
TTGTGTGTATGATTCTCTGC+GGG - chr2.2:38416639-38416658 MS.gene033871:CDS 40.0%
! AACTCTAAGAAAGGGTCTGA+TGG - chr2.2:38415731-38415750 MS.gene033871:CDS 40.0%
! CATGGGCAATCCATTTTACT+AGG - chr2.2:38416370-38416389 MS.gene033871:CDS 40.0%
! GAATACCATTTTCGAAGAGC+GGG - chr2.2:38416729-38416748 MS.gene033871:CDS 40.0%
!!! CGGGTTGATGATTTTGTTGT+TGG - chr2.2:38416658-38416677 MS.gene033871:CDS 40.0%
CACCACCTATGCCTAGTATT+AGG + chr2.2:38416538-38416557 None:intergenic 45.0%
CATCCTTTATTACCCCCTGA+CGG - chr2.2:38415527-38415546 MS.gene033871:CDS 45.0%
CTATGAGATTGACATGGACG+AGG - chr2.2:38416204-38416223 MS.gene033871:CDS 45.0%
GAACAACCAGGTAAAGGACT+TGG + chr2.2:38416422-38416441 None:intergenic 45.0%
GGATTCGTCTTCAAAGTTGG+TGG + chr2.2:38415815-38415834 None:intergenic 45.0%
GGCTATGCAGAATGCAATTC+AGG - chr2.2:38416504-38416523 MS.gene033871:CDS 45.0%
GGTTGTTCGAAACATGGCTA+AGG - chr2.2:38416434-38416453 MS.gene033871:CDS 45.0%
TAAACGATCAGGCAGGTGTA+CGG - chr2.2:38416002-38416021 MS.gene033871:CDS 45.0%
TAGCCATGTTTCGAACAACC+AGG + chr2.2:38416434-38416453 None:intergenic 45.0%
TCGGTTACAATTCCCATTGG+AGG + chr2.2:38416475-38416494 None:intergenic 45.0%
TCTTTCCCGCTCTTCGAAAA+TGG + chr2.2:38416737-38416756 None:intergenic 45.0%
! GATCGCAAACCCTTGTTTCA+TGG + chr2.2:38415702-38415721 None:intergenic 45.0%
AAACGATCAGGCAGGTGTAC+GGG - chr2.2:38416003-38416022 MS.gene033871:CDS 50.0%
AGAAAGACACCTTCTCGGGA+AGG - chr2.2:38416117-38416136 MS.gene033871:CDS 50.0%
ATGTCTTCGAGGCCTCCAAT+GGG - chr2.2:38416460-38416479 MS.gene033871:CDS 50.0%
CGGCATCACATACCATGGAA+CGG + chr2.2:38416042-38416061 None:intergenic 50.0%
CGTTCCATGGTATGTGATGC+CGG - chr2.2:38416040-38416059 MS.gene033871:CDS 50.0%
CTAGGCATAGGTGGTGTCTA+TGG - chr2.2:38416542-38416561 MS.gene033871:CDS 50.0%
GGCTAAGGTGTATGTCTTCG+AGG - chr2.2:38416449-38416468 MS.gene033871:CDS 50.0%
TATGTCTTCGAGGCCTCCAA+TGG - chr2.2:38416459-38416478 MS.gene033871:CDS 50.0%
TCTCCGTCAGGGGGTAATAA+AGG + chr2.2:38415533-38415552 None:intergenic 50.0%
! CGTGTTGACGTTTCGGATTC+CGG - chr2.2:38415572-38415591 MS.gene033871:CDS 50.0%
! CTGCATAGCCTTGCACTGAT+CGG + chr2.2:38416494-38416513 None:intergenic 50.0%
! GTGTTGACGTTTCGGATTCC+GGG - chr2.2:38415573-38415592 MS.gene033871:CDS 50.0%
! TGCTGCTCGTGTTGACGTTT+CGG - chr2.2:38415565-38415584 MS.gene033871:CDS 50.0%
ACCACCGGCATCACATACCA+TGG + chr2.2:38416047-38416066 None:intergenic 55.0%
AGACACCTTCTCGGGAAGGA+AGG - chr2.2:38416121-38416140 MS.gene033871:CDS 55.0%
CATCTCCTTCCTTCCCGAGA+AGG + chr2.2:38416129-38416148 None:intergenic 55.0%
CTTCTCGGGAAGGAAGGAGA+TGG - chr2.2:38416127-38416146 MS.gene033871:CDS 55.0%
TCCATGGTATGTGATGCCGG+TGG - chr2.2:38416043-38416062 MS.gene033871:CDS 55.0%
TCTGGGCTGATGCACGTAGT+AGG - chr2.2:38416248-38416267 MS.gene033871:CDS 55.0%
! ATCAGCTAGCTCTCCGTCAG+GGG + chr2.2:38415543-38415562 None:intergenic 55.0%
! CATCAGCTAGCTCTCCGTCA+GGG + chr2.2:38415544-38415563 None:intergenic 55.0%
CCTGACGGAGAGCTAGCTGA+TGG - chr2.2:38415542-38415561 MS.gene033871:CDS 60.0%
CGGGAAGGAAGGAGATGGCA+GGG - chr2.2:38416132-38416151 MS.gene033871:CDS 60.0%
TCGGGAAGGAAGGAGATGGC+AGG - chr2.2:38416131-38416150 MS.gene033871:CDS 60.0%
! CCATCAGCTAGCTCTCCGTC+AGG + chr2.2:38415545-38415564 None:intergenic 60.0%
! TCAGCTAGCTCTCCGTCAGG+GGG + chr2.2:38415542-38415561 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 38415497 38416759 38415497 ID=MS.gene033871
chr2.2 mRNA 38415497 38416759 38415497 ID=MS.gene033871.t1;Parent=MS.gene033871
chr2.2 exon 38415497 38416759 38415497 ID=MS.gene033871.t1.exon1;Parent=MS.gene033871.t1
chr2.2 CDS 38415497 38416759 38415497 ID=cds.MS.gene033871.t1;Parent=MS.gene033871.t1
Gene Sequence

>MS.gene033871

ATGGCTGATGGTCCTCCTATATTGATCGATCATCCTTTATTACCCCCTGACGGAGAGCTAGCTGATGGTGCTGCTCGTGTTGACGTTTCGGATTCCGGGACCTTTGAAACAACAAATGCTGTCGCAACAGATAAATTCACGCCTACTATCGGTATGTCTTTTAAATCGGTTGCAGATTGTAAGTCTTTTTACCGTGAATATGCCATGAAACAAGGGTTTGCGATCAAAACTAGAAACTCTAAGAAAGGGTCTGATGGCATGTTAAAATATTTCATTCTAACTTGTGCAAGAGAAGGTCACCATGAATCAAACATACCACCAACTTTGAAGACGAATCCAACGAAGAAACTTGATTGCTCAGCTAAGATAACGGTTGCTTTAAAGAAGGGTCTATGGACTATTTTGTCTTTTAATTCATGTCATAATCATGAGATAAGTCCAACTAAATCACGGTTGTTTGCTGGCAATAAGAAGATTGATATGCATGCACAGCGGACAATTTTGATAAACGATCAGGCAGGTGTACGGGTGAACAAAAGTTTCCGTTCCATGGTATGTGATGCCGGTGGTTACGAAAATCTAACATTTGTGGAGAGAGATGTCAGAAACTTTGTGGCAAAAGAAAGACACCTTCTCGGGAAGGAAGGAGATGGCAGGGCACTTTTATCCTACTTTGCTAGAATGAGGGAATGCAACAAAGACTTTTTCTATGAGATTGACATGGACGAGGACTTTCATGTGCAGAATATTTTCTGGGCTGATGCACGTAGTAGGTCTGCCTATGAATACTTTGGTGATGTTGTCACGTTCGATACCACCTACTTGACAAACAAGTATGACATGCCATTTTCCCCGTTTGTTAGTGTCAATCATCATGGGCAATCCATTTTACTAGGTTGCGGTCTTTTATCAGCTGAAGATACCAAGTCCTTTACCTGGTTGTTCGAAACATGGCTAAGGTGTATGTCTTCGAGGCCTCCAATGGGAATTGTAACCGATCAGTGCAAGGCTATGCAGAATGCAATTCAGGTTGTGTTTCCTAATACTAGGCATAGGTGGTGTCTATGGCATATAATGAGAAAAATTGCCGAAAAATTGAAAGGATACGCACAATACAAAGGAATAAAAAATGATATGAAAAATTGTGTGTATGATTCTCTGCGGGTTGATGATTTTGTTGTTGGGTGGACAACATTCATTGAAAAATATGGTTTGGGTGAAAATGATTGGTTGAATACCATTTTCGAAGAGCGGGAAAGATGA
Protein sequence

>MS.gene033871.t1

MADGPPILIDHPLLPPDGELADGAARVDVSDSGTFETTNAVATDKFTPTIGMSFKSVADCKSFYREYAMKQGFAIKTRNSKKGSDGMLKYFILTCAREGHHESNIPPTLKTNPTKKLDCSAKITVALKKGLWTILSFNSCHNHEISPTKSRLFAGNKKIDMHAQRTILINDQAGVRVNKSFRSMVCDAGGYENLTFVERDVRNFVAKERHLLGKEGDGRALLSYFARMRECNKDFFYEIDMDEDFHVQNIFWADARSRSAYEYFGDVVTFDTTYLTNKYDMPFSPFVSVNHHGQSILLGCGLLSAEDTKSFTWLFETWLRCMSSRPPMGIVTDQCKAMQNAIQVVFPNTRHRWCLWHIMRKIAEKLKGYAQYKGIKNDMKNCVYDSLRVDDFVVGWTTFIEKYGLGENDWLNTIFEERER