Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene033908.t1 | XP_004514173.1 | 57.5 | 261 | 103 | 2 | 18 | 277 | 4 | 257 | 1.20E-76 | 296.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene033908.t1 | Q9SWG3 | 34.9 | 235 | 144 | 5 | 48 | 275 | 51 | 283 | 2.5e-30 | 134.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene033908.t1 | A0A1S2Z343 | 57.5 | 261 | 103 | 2 | 18 | 277 | 4 | 257 | 8.7e-77 | 296.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene033908.t1 | TF | FAR1 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene033908.t1 | MTR_0856s0010 | 44.311 | 167 | 84 | 4 | 9 | 173 | 1 | 160 | 3.19e-36 | 127 |
MS.gene033908.t1 | MTR_6g051425 | 26.556 | 241 | 160 | 6 | 50 | 277 | 19 | 255 | 5.64e-23 | 96.7 |
MS.gene033908.t1 | MTR_0558s0020 | 24.823 | 282 | 178 | 8 | 30 | 277 | 8 | 289 | 1.05e-21 | 92.4 |
MS.gene033908.t1 | MTR_4g035820 | 29.474 | 285 | 175 | 12 | 9 | 277 | 39 | 313 | 1.36e-21 | 94.7 |
MS.gene033908.t1 | MTR_7g446060 | 51.220 | 82 | 40 | 0 | 130 | 211 | 7 | 88 | 1.35e-20 | 85.5 |
MS.gene033908.t1 | MTR_1g070355 | 28.205 | 234 | 153 | 7 | 54 | 277 | 80 | 308 | 2.70e-20 | 90.5 |
MS.gene033908.t1 | MTR_3g450850 | 26.829 | 287 | 191 | 8 | 2 | 272 | 3 | 286 | 1.03e-18 | 85.1 |
MS.gene033908.t1 | MTR_8g446020 | 24.454 | 229 | 152 | 4 | 52 | 277 | 39 | 249 | 1.53e-16 | 77.4 |
MS.gene033908.t1 | MTR_1g008290 | 31.579 | 133 | 89 | 1 | 108 | 240 | 14 | 144 | 1.64e-16 | 75.1 |
MS.gene033908.t1 | MTR_7g446520 | 25.893 | 224 | 153 | 2 | 52 | 274 | 92 | 303 | 1.32e-15 | 75.9 |
MS.gene033908.t1 | MTR_1g019850 | 30.303 | 165 | 98 | 6 | 17 | 175 | 43 | 196 | 6.38e-15 | 72.8 |
MS.gene033908.t1 | MTR_3g012160 | 41.975 | 81 | 46 | 1 | 193 | 273 | 14 | 93 | 2.62e-14 | 67.4 |
MS.gene033908.t1 | MTR_1g083640 | 22.426 | 272 | 177 | 8 | 18 | 255 | 11 | 282 | 4.73e-14 | 70.9 |
MS.gene033908.t1 | MTR_1g013060 | 23.944 | 213 | 147 | 6 | 44 | 244 | 20 | 229 | 6.11e-14 | 69.7 |
MS.gene033908.t1 | MTR_7g446480 | 30.573 | 157 | 108 | 1 | 122 | 277 | 143 | 299 | 9.86e-14 | 70.5 |
MS.gene033908.t1 | MTR_7g115320 | 59.259 | 54 | 19 | 1 | 137 | 190 | 9 | 59 | 1.13e-13 | 65.5 |
MS.gene033908.t1 | MTR_5g076070 | 23.166 | 259 | 186 | 7 | 23 | 272 | 28 | 282 | 3.52e-13 | 68.6 |
MS.gene033908.t1 | MTR_6g090505 | 25.581 | 172 | 125 | 2 | 109 | 277 | 53 | 224 | 1.68e-12 | 67.0 |
MS.gene033908.t1 | MTR_7g446510 | 31.126 | 151 | 103 | 1 | 128 | 277 | 164 | 314 | 1.16e-11 | 64.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene033908.t1 | AT4G15090 | 34.894 | 235 | 144 | 5 | 48 | 275 | 51 | 283 | 8.22e-34 | 130 |
MS.gene033908.t1 | AT4G15090 | 34.894 | 235 | 144 | 5 | 48 | 275 | 51 | 283 | 8.22e-34 | 130 |
MS.gene033908.t1 | AT4G15090 | 34.894 | 235 | 144 | 5 | 48 | 275 | 51 | 283 | 8.22e-34 | 130 |
MS.gene033908.t1 | AT4G15090 | 34.894 | 235 | 144 | 5 | 48 | 275 | 51 | 283 | 8.22e-34 | 130 |
MS.gene033908.t1 | AT4G15090 | 34.894 | 235 | 144 | 5 | 48 | 275 | 51 | 283 | 8.22e-34 | 130 |
MS.gene033908.t1 | AT4G38180 | 28.470 | 281 | 181 | 7 | 8 | 277 | 38 | 309 | 1.05e-27 | 112 |
MS.gene033908.t1 | AT3G22170 | 29.225 | 284 | 153 | 9 | 18 | 277 | 35 | 294 | 4.50e-26 | 107 |
MS.gene033908.t1 | AT3G22170 | 29.225 | 284 | 153 | 9 | 18 | 277 | 35 | 294 | 4.50e-26 | 107 |
MS.gene033908.t1 | AT1G76320 | 28.755 | 233 | 148 | 7 | 52 | 277 | 1 | 222 | 1.12e-24 | 103 |
MS.gene033908.t1 | AT1G76320 | 28.755 | 233 | 148 | 7 | 52 | 277 | 1 | 222 | 1.21e-24 | 103 |
MS.gene033908.t1 | AT1G76320 | 28.755 | 233 | 148 | 7 | 52 | 277 | 1 | 222 | 1.21e-24 | 103 |
MS.gene033908.t1 | AT1G76320 | 28.755 | 233 | 148 | 7 | 52 | 277 | 1 | 222 | 1.71e-24 | 103 |
MS.gene033908.t1 | AT5G28530 | 29.482 | 251 | 151 | 6 | 46 | 274 | 53 | 299 | 3.03e-22 | 96.7 |
MS.gene033908.t1 | AT5G28530 | 29.482 | 251 | 151 | 6 | 46 | 274 | 53 | 299 | 3.05e-22 | 96.7 |
MS.gene033908.t1 | AT5G28530 | 29.482 | 251 | 151 | 6 | 46 | 274 | 53 | 299 | 3.05e-22 | 96.7 |
MS.gene033908.t1 | AT2G27110 | 29.583 | 240 | 127 | 8 | 48 | 277 | 49 | 256 | 1.63e-21 | 94.7 |
MS.gene033908.t1 | AT2G27110 | 29.583 | 240 | 127 | 8 | 48 | 277 | 49 | 256 | 1.63e-21 | 94.7 |
MS.gene033908.t1 | AT1G52520 | 27.155 | 232 | 156 | 6 | 48 | 276 | 85 | 306 | 1.56e-20 | 91.7 |
MS.gene033908.t1 | AT1G80010 | 30.566 | 265 | 143 | 10 | 39 | 277 | 82 | 331 | 5.23e-19 | 87.0 |
MS.gene033908.t1 | AT1G10240 | 28.163 | 245 | 150 | 10 | 48 | 274 | 48 | 284 | 9.59e-19 | 86.3 |
MS.gene033908.t1 | AT1G10240 | 28.163 | 245 | 150 | 10 | 48 | 274 | 48 | 284 | 9.59e-19 | 86.3 |
MS.gene033908.t1 | AT3G06250 | 28.571 | 231 | 123 | 9 | 48 | 274 | 190 | 382 | 1.23e-17 | 83.2 |
MS.gene033908.t1 | AT3G06250 | 28.571 | 231 | 123 | 9 | 48 | 274 | 190 | 382 | 1.23e-17 | 83.2 |
MS.gene033908.t1 | AT3G06250 | 28.571 | 231 | 123 | 9 | 48 | 274 | 190 | 382 | 1.23e-17 | 83.2 |
MS.gene033908.t1 | AT4G19990 | 28.112 | 249 | 117 | 8 | 51 | 277 | 38 | 246 | 7.01e-17 | 80.9 |
MS.gene033908.t1 | AT4G19990 | 28.112 | 249 | 117 | 8 | 51 | 277 | 24 | 232 | 8.40e-17 | 80.5 |
MS.gene033908.t1 | AT4G19990 | 28.112 | 249 | 117 | 8 | 51 | 277 | 24 | 232 | 8.40e-17 | 80.5 |
MS.gene033908.t1 | AT4G19990 | 28.112 | 249 | 117 | 8 | 51 | 277 | 24 | 232 | 8.88e-17 | 80.5 |
MS.gene033908.t1 | AT4G19990 | 28.112 | 249 | 117 | 8 | 51 | 277 | 24 | 232 | 1.03e-16 | 80.5 |
MS.gene033908.t1 | AT4G19990 | 28.112 | 249 | 117 | 8 | 51 | 277 | 24 | 232 | 1.03e-16 | 80.5 |
MS.gene033908.t1 | AT2G27110 | 40.741 | 108 | 52 | 3 | 172 | 277 | 14 | 111 | 1.03e-15 | 77.4 |
MS.gene033908.t1 | AT5G18960 | 26.613 | 248 | 133 | 8 | 36 | 274 | 199 | 406 | 7.32e-15 | 74.7 |
MS.gene033908.t1 | AT5G18960 | 26.613 | 248 | 133 | 8 | 36 | 274 | 199 | 406 | 7.32e-15 | 74.7 |
MS.gene033908.t1 | AT4G19990 | 29.670 | 182 | 82 | 6 | 104 | 277 | 32 | 175 | 7.35e-13 | 68.9 |
Find 62 sgRNAs with CRISPR-Local
Find 69 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CGTGTTGACGTTTCGGATTC+CGG | 0.204382 | 2.2:-39186591 | MS.gene033908:CDS |
GATCGCAAACCCTTGTTTCA+TGG | 0.299904 | 2.2:+39186464 | None:intergenic |
GTGTTGACGTTTCGGATTCC+GGG | 0.344560 | 2.2:-39186590 | MS.gene033908:CDS |
TTGCTTTAAAGAAGGGTCTA+TGG | 0.361166 | 2.2:-39186293 | MS.gene033908:CDS |
TGCGGCTCGTGTTGACGTTT+CGG | 0.362249 | 2.2:-39186598 | MS.gene033908:CDS |
ACTAAATCACGGTTGTTTGC+TGG | 0.375082 | 2.2:-39186225 | MS.gene033908:CDS |
AAAGGATGATCGATCAATAT+AGG | 0.415391 | 2.2:+39186651 | None:intergenic |
TTGGTGGTATGTTTGATTCA+TGG | 0.433399 | 2.2:+39186367 | None:intergenic |
TCTCCGTCAAGGGGTAATAA+AGG | 0.433585 | 2.2:+39186633 | None:intergenic |
GCAAACAACCGTGATTTAGT+TGG | 0.439208 | 2.2:+39186228 | None:intergenic |
TATCCTACTTTGCTAGAATG+AGG | 0.459924 | 2.2:-39186002 | MS.gene033908:CDS |
AAAACTAGAAACTCTAAGAA+AGG | 0.460138 | 2.2:-39186441 | MS.gene033908:CDS |
AAACTAGAAACTCTAAGAAA+GGG | 0.460938 | 2.2:-39186440 | MS.gene033908:CDS |
CATCCTTTATTACCCCTTGA+CGG | 0.461930 | 2.2:-39186636 | MS.gene033908:CDS |
GCAAAAGAAAGACACCTTCT+CGG | 0.472868 | 2.2:-39186051 | MS.gene033908:CDS |
GATAACGGTTGCTTTAAAGA+AGG | 0.473052 | 2.2:-39186301 | MS.gene033908:CDS |
AACATCACCAAAGTATTCAT+AGG | 0.473828 | 2.2:+39185888 | None:intergenic |
GAGCAATCAAGTTTCTTCGT+TGG | 0.480101 | 2.2:+39186330 | None:intergenic |
CACTTATGCTCGATGGCTGA+TGG | 0.482201 | 2.2:-39186678 | None:intergenic |
TCGGGAAGGAAGGAGATGGC+AGG | 0.482875 | 2.2:-39186032 | MS.gene033908:CDS |
ATTTGTTGTTTCAAAGGTCC+CGG | 0.485747 | 2.2:+39186572 | None:intergenic |
GACAGCATTTGTTGTTTCAA+AGG | 0.491833 | 2.2:+39186566 | None:intergenic |
CTTGTTTCATGGCATATTCA+CGG | 0.492232 | 2.2:+39186475 | None:intergenic |
CGTGAATATGCCATGAAACA+AGG | 0.498225 | 2.2:-39186474 | MS.gene033908:CDS |
ATCAGCTAGCTCTCCGTCAA+GGG | 0.500449 | 2.2:+39186623 | None:intergenic |
TTAAAAGACATACCGATAGT+AGG | 0.501742 | 2.2:+39186525 | None:intergenic |
GTTGGATTCGTCTTCAAAGT+TGG | 0.502236 | 2.2:+39186348 | None:intergenic |
CATCTCCTTCCTTCCCGAGA+AGG | 0.502837 | 2.2:+39186037 | None:intergenic |
TTACGAAAATCTAACATTTG+TGG | 0.512305 | 2.2:-39186097 | MS.gene033908:CDS |
AAACGATCAGGCAGGTGTAC+GGG | 0.512319 | 2.2:-39186160 | MS.gene033908:CDS |
GAGAGATGTCAGAAACTTTG+TGG | 0.514693 | 2.2:-39186073 | MS.gene033908:CDS |
TCTGGGCTGATGCACGTAGT+AGG | 0.516810 | 2.2:-39185915 | MS.gene033908:CDS |
CAAAAGAAAGACACCTTCTC+GGG | 0.517286 | 2.2:-39186050 | MS.gene033908:CDS |
ATAACGGTTGCTTTAAAGAA+GGG | 0.522275 | 2.2:-39186300 | MS.gene033908:CDS |
TTCCCTCATTCTAGCAAAGT+AGG | 0.524536 | 2.2:+39185999 | None:intergenic |
GAACAAAAGTTTCCGTTCCA+TGG | 0.529264 | 2.2:-39186136 | MS.gene033908:CDS |
GGATTCGTCTTCAAAGTTGG+TGG | 0.530111 | 2.2:+39186351 | None:intergenic |
TAAACGATCAGGCAGGTGTA+CGG | 0.533293 | 2.2:-39186161 | MS.gene033908:CDS |
ATCCTACTTTGCTAGAATGA+GGG | 0.537508 | 2.2:-39186001 | MS.gene033908:CDS |
CTATGAGATTGACATGGACG+AGG | 0.547341 | 2.2:-39185959 | MS.gene033908:CDS |
TGATTGCTCAGCTAAGATAA+CGG | 0.550952 | 2.2:-39186316 | MS.gene033908:CDS |
GATAAATTCACGCCTACTAT+CGG | 0.551302 | 2.2:-39186537 | MS.gene033908:CDS |
ATTCTAACTTGTGCAAGAGA+AGG | 0.552020 | 2.2:-39186393 | MS.gene033908:CDS |
AGGTCTGCCTATGAATACTT+TGG | 0.552277 | 2.2:-39185895 | MS.gene033908:CDS |
AGACACCTTCTCGGGAAGGA+AGG | 0.553011 | 2.2:-39186042 | MS.gene033908:CDS |
AACTCTAAGAAAGGGGCCGA+TGG | 0.560180 | 2.2:-39186432 | MS.gene033908:CDS |
CATCAGCTAGCTCTCCGTCA+AGG | 0.566436 | 2.2:+39186622 | None:intergenic |
ACCACGGGCATCACATACCA+TGG | 0.597354 | 2.2:+39186119 | None:intergenic |
GTGAATATGCCATGAAACAA+GGG | 0.602322 | 2.2:-39186473 | MS.gene033908:CDS |
AGAAAGACACCTTCTCGGGA+AGG | 0.609091 | 2.2:-39186046 | MS.gene033908:CDS |
CGGGAAGGAAGGAGATGGCA+GGG | 0.622349 | 2.2:-39186031 | MS.gene033908:CDS |
CTTCTCGGGAAGGAAGGAGA+TGG | 0.631777 | 2.2:-39186036 | MS.gene033908:CDS |
AACTAGAAACTCTAAGAAAG+GGG | 0.633083 | 2.2:-39186439 | MS.gene033908:CDS |
GGATGATCGATCAATATAGG+AGG | 0.639611 | 2.2:+39186654 | None:intergenic |
AGATAAGTCCAACTAAATCA+CGG | 0.645312 | 2.2:-39186236 | MS.gene033908:CDS |
GGGCATCACATACCATGGAA+CGG | 0.648721 | 2.2:+39186124 | None:intergenic |
CTTGACGGAGAGCTAGCTGA+TGG | 0.649164 | 2.2:-39186621 | MS.gene033908:CDS |
TCAGCTAGCTCTCCGTCAAG+GGG | 0.651971 | 2.2:+39186624 | None:intergenic |
CGGAGAGCTAGCTGATGGTG+CGG | 0.664984 | 2.2:-39186616 | MS.gene033908:CDS |
ATACTTGTTTGTCAAGTACG+TGG | 0.696002 | 2.2:+39185852 | None:intergenic |
TCCATGGTATGTGATGCCCG+TGG | 0.764195 | 2.2:-39186120 | MS.gene033908:CDS |
AGATTGATATGCATGCACAG+CGG | 0.798983 | 2.2:-39186194 | MS.gene033908:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | TTACGAAAATCTAACATTTG+TGG | - | chr2.2:39186425-39186444 | MS.gene033908:CDS | 25.0% |
!! | AAAACTAGAAACTCTAAGAA+AGG | - | chr2.2:39186081-39186100 | MS.gene033908:CDS | 25.0% |
!! | AAACTAGAAACTCTAAGAAA+GGG | - | chr2.2:39186082-39186101 | MS.gene033908:CDS | 25.0% |
!! | TATCGGTATGTCTTTTAAAT+CGG | - | chr2.2:39186002-39186021 | MS.gene033908:CDS | 25.0% |
!!! | GAAATATTTTAACATGCCAT+CGG | + | chr2.2:39186109-39186128 | None:intergenic | 25.0% |
AAAGGATGATCGATCAATAT+AGG | + | chr2.2:39185874-39185893 | None:intergenic | 30.0% | |
AGATAAGTCCAACTAAATCA+CGG | - | chr2.2:39186286-39186305 | MS.gene033908:CDS | 30.0% | |
TTAAAAGACATACCGATAGT+AGG | + | chr2.2:39186000-39186019 | None:intergenic | 30.0% | |
! | AACATCACCAAAGTATTCAT+AGG | + | chr2.2:39186637-39186656 | None:intergenic | 30.0% |
! | AACTAGAAACTCTAAGAAAG+GGG | - | chr2.2:39186083-39186102 | MS.gene033908:CDS | 30.0% |
! | ATGTTAGATTTTCGTAACCA+CGG | + | chr2.2:39186422-39186441 | None:intergenic | 30.0% |
! | CTTTTTCTATGAGATTGACA+TGG | - | chr2.2:39186557-39186576 | MS.gene033908:CDS | 30.0% |
! | TCATGTGCAGAATATTTTCT+GGG | - | chr2.2:39186590-39186609 | MS.gene033908:CDS | 30.0% |
! | TTCATGTGCAGAATATTTTC+TGG | - | chr2.2:39186589-39186608 | MS.gene033908:CDS | 30.0% |
!! | ATAACGGTTGCTTTAAAGAA+GGG | - | chr2.2:39186222-39186241 | MS.gene033908:CDS | 30.0% |
!! | GACAATTTTGATAAACGATC+AGG | - | chr2.2:39186350-39186369 | MS.gene033908:CDS | 30.0% |
ATCCTACTTTGCTAGAATGA+GGG | - | chr2.2:39186521-39186540 | MS.gene033908:CDS | 35.0% | |
CTTGTTTCATGGCATATTCA+CGG | + | chr2.2:39186050-39186069 | None:intergenic | 35.0% | |
GATAAATTCACGCCTACTAT+CGG | - | chr2.2:39185985-39186004 | MS.gene033908:CDS | 35.0% | |
GTGAATATGCCATGAAACAA+GGG | - | chr2.2:39186049-39186068 | MS.gene033908:CDS | 35.0% | |
TATCCTACTTTGCTAGAATG+AGG | - | chr2.2:39186520-39186539 | MS.gene033908:CDS | 35.0% | |
TGATTGCTCAGCTAAGATAA+CGG | - | chr2.2:39186206-39186225 | MS.gene033908:CDS | 35.0% | |
! | ATTCTAACTTGTGCAAGAGA+AGG | - | chr2.2:39186129-39186148 | MS.gene033908:CDS | 35.0% |
! | TGTTAGATTTTCGTAACCAC+GGG | + | chr2.2:39186421-39186440 | None:intergenic | 35.0% |
! | TTGGTGGTATGTTTGATTCA+TGG | + | chr2.2:39186158-39186177 | None:intergenic | 35.0% |
!! | ATTTGTTGTTTCAAAGGTCC+CGG | + | chr2.2:39185953-39185972 | None:intergenic | 35.0% |
!! | ATTTTGATAAACGATCAGGC+AGG | - | chr2.2:39186354-39186373 | MS.gene033908:CDS | 35.0% |
!! | GACAGCATTTGTTGTTTCAA+AGG | + | chr2.2:39185959-39185978 | None:intergenic | 35.0% |
!! | GATAACGGTTGCTTTAAAGA+AGG | - | chr2.2:39186221-39186240 | MS.gene033908:CDS | 35.0% |
!! | TTGCTTTAAAGAAGGGTCTA+TGG | - | chr2.2:39186229-39186248 | MS.gene033908:CDS | 35.0% |
ACTAAATCACGGTTGTTTGC+TGG | - | chr2.2:39186297-39186316 | MS.gene033908:CDS | 40.0% | |
AGATTGATATGCATGCACAG+CGG | - | chr2.2:39186328-39186347 | MS.gene033908:CDS | 40.0% | |
AGGTCTGCCTATGAATACTT+TGG | - | chr2.2:39186627-39186646 | MS.gene033908:CDS | 40.0% | |
CAAAAGAAAGACACCTTCTC+GGG | - | chr2.2:39186472-39186491 | MS.gene033908:CDS | 40.0% | |
CATCCTTTATTACCCCTTGA+CGG | - | chr2.2:39185886-39185905 | MS.gene033908:CDS | 40.0% | |
CGTGAATATGCCATGAAACA+AGG | - | chr2.2:39186048-39186067 | MS.gene033908:CDS | 40.0% | |
GAACAAAAGTTTCCGTTCCA+TGG | - | chr2.2:39186386-39186405 | MS.gene033908:CDS | 40.0% | |
GAGAGATGTCAGAAACTTTG+TGG | - | chr2.2:39186449-39186468 | MS.gene033908:CDS | 40.0% | |
GAGCAATCAAGTTTCTTCGT+TGG | + | chr2.2:39186195-39186214 | None:intergenic | 40.0% | |
GCAAAAGAAAGACACCTTCT+CGG | - | chr2.2:39186471-39186490 | MS.gene033908:CDS | 40.0% | |
GCAAACAACCGTGATTTAGT+TGG | + | chr2.2:39186297-39186316 | None:intergenic | 40.0% | |
GGATGATCGATCAATATAGG+AGG | + | chr2.2:39185871-39185890 | None:intergenic | 40.0% | |
GTTGGATTCGTCTTCAAAGT+TGG | + | chr2.2:39186177-39186196 | None:intergenic | 40.0% | |
TTCCCTCATTCTAGCAAAGT+AGG | + | chr2.2:39186526-39186545 | None:intergenic | 40.0% | |
CTATGAGATTGACATGGACG+AGG | - | chr2.2:39186563-39186582 | MS.gene033908:CDS | 45.0% | |
GGATTCGTCTTCAAAGTTGG+TGG | + | chr2.2:39186174-39186193 | None:intergenic | 45.0% | |
TAAACGATCAGGCAGGTGTA+CGG | - | chr2.2:39186361-39186380 | MS.gene033908:CDS | 45.0% | |
TCTCCGTCAAGGGGTAATAA+AGG | + | chr2.2:39185892-39185911 | None:intergenic | 45.0% | |
! | GATCGCAAACCCTTGTTTCA+TGG | + | chr2.2:39186061-39186080 | None:intergenic | 45.0% |
AAACGATCAGGCAGGTGTAC+GGG | - | chr2.2:39186362-39186381 | MS.gene033908:CDS | 50.0% | |
AGAAAGACACCTTCTCGGGA+AGG | - | chr2.2:39186476-39186495 | MS.gene033908:CDS | 50.0% | |
GGGCATCACATACCATGGAA+CGG | + | chr2.2:39186401-39186420 | None:intergenic | 50.0% | |
! | AACTCTAAGAAAGGGGCCGA+TGG | - | chr2.2:39186090-39186109 | MS.gene033908:CDS | 50.0% |
! | ATCAGCTAGCTCTCCGTCAA+GGG | + | chr2.2:39185902-39185921 | None:intergenic | 50.0% |
! | CGTGTTGACGTTTCGGATTC+CGG | - | chr2.2:39185931-39185950 | MS.gene033908:CDS | 50.0% |
! | GTGTTGACGTTTCGGATTCC+GGG | - | chr2.2:39185932-39185951 | MS.gene033908:CDS | 50.0% |
ACCACGGGCATCACATACCA+TGG | + | chr2.2:39186406-39186425 | None:intergenic | 55.0% | |
AGACACCTTCTCGGGAAGGA+AGG | - | chr2.2:39186480-39186499 | MS.gene033908:CDS | 55.0% | |
CATCTCCTTCCTTCCCGAGA+AGG | + | chr2.2:39186488-39186507 | None:intergenic | 55.0% | |
CTTCTCGGGAAGGAAGGAGA+TGG | - | chr2.2:39186486-39186505 | MS.gene033908:CDS | 55.0% | |
CTTGACGGAGAGCTAGCTGA+TGG | - | chr2.2:39185901-39185920 | MS.gene033908:CDS | 55.0% | |
TCCATGGTATGTGATGCCCG+TGG | - | chr2.2:39186402-39186421 | MS.gene033908:CDS | 55.0% | |
TCTGGGCTGATGCACGTAGT+AGG | - | chr2.2:39186607-39186626 | MS.gene033908:CDS | 55.0% | |
! | CATCAGCTAGCTCTCCGTCA+AGG | + | chr2.2:39185903-39185922 | None:intergenic | 55.0% |
! | TCAGCTAGCTCTCCGTCAAG+GGG | + | chr2.2:39185901-39185920 | None:intergenic | 55.0% |
! | TGCGGCTCGTGTTGACGTTT+CGG | - | chr2.2:39185924-39185943 | MS.gene033908:CDS | 55.0% |
CGGGAAGGAAGGAGATGGCA+GGG | - | chr2.2:39186491-39186510 | MS.gene033908:CDS | 60.0% | |
TCGGGAAGGAAGGAGATGGC+AGG | - | chr2.2:39186490-39186509 | MS.gene033908:CDS | 60.0% | |
! | CGGAGAGCTAGCTGATGGTG+CGG | - | chr2.2:39185906-39185925 | MS.gene033908:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.2 | gene | 39185856 | 39186688 | 39185856 | ID=MS.gene033908 |
chr2.2 | mRNA | 39185856 | 39186688 | 39185856 | ID=MS.gene033908.t1;Parent=MS.gene033908 |
chr2.2 | exon | 39185856 | 39186688 | 39185856 | ID=MS.gene033908.t1.exon1;Parent=MS.gene033908.t1 |
chr2.2 | CDS | 39185856 | 39186688 | 39185856 | ID=cds.MS.gene033908.t1;Parent=MS.gene033908.t1 |
Gene Sequence |
Protein sequence |