Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034122.t1 | AES60251.1 | 60.7 | 112 | 40 | 2 | 168 | 279 | 128 | 235 | 1.40E-24 | 124 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034122.t1 | Q54Y26 | 50.5 | 93 | 35 | 2 | 211 | 293 | 164 | 255 | 2.7e-16 | 87.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034122.t1 | A0A5D2FFF5 | 61.6 | 112 | 39 | 3 | 168 | 279 | 131 | 238 | 1.0e-24 | 124.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034122.t1 | MTR_1g042700 | 59.821 | 112 | 41 | 2 | 168 | 279 | 128 | 235 | 9.14e-34 | 131 |
| MS.gene034122.t1 | MTR_1g069735 | 57.895 | 114 | 44 | 2 | 181 | 293 | 145 | 255 | 1.15e-32 | 127 |
| MS.gene034122.t1 | MTR_1g069735 | 57.895 | 114 | 44 | 2 | 181 | 293 | 145 | 255 | 1.54e-32 | 127 |
| MS.gene034122.t1 | MTR_7g097150 | 73.810 | 84 | 21 | 1 | 211 | 293 | 172 | 255 | 2.06e-32 | 127 |
| MS.gene034122.t1 | MTR_1g069735 | 57.895 | 114 | 44 | 2 | 181 | 293 | 145 | 255 | 2.59e-32 | 127 |
| MS.gene034122.t1 | MTR_1g442790 | 59.821 | 112 | 41 | 3 | 168 | 279 | 123 | 230 | 5.56e-32 | 126 |
| MS.gene034122.t1 | MTR_1g442790 | 57.143 | 112 | 44 | 2 | 168 | 279 | 123 | 230 | 5.59e-32 | 126 |
| MS.gene034122.t1 | MTR_1g075880 | 53.571 | 112 | 48 | 2 | 168 | 279 | 130 | 237 | 1.22e-28 | 117 |
| MS.gene034122.t1 | MTR_2g040150 | 50.893 | 112 | 51 | 3 | 168 | 279 | 126 | 233 | 1.86e-23 | 102 |
| MS.gene034122.t1 | MTR_3g104700 | 47.321 | 112 | 55 | 2 | 168 | 279 | 107 | 214 | 5.14e-23 | 100 |
| MS.gene034122.t1 | MTR_3g104700 | 47.321 | 112 | 55 | 2 | 168 | 279 | 107 | 214 | 5.26e-23 | 100 |
| MS.gene034122.t1 | MTR_1g019340 | 48.000 | 100 | 49 | 1 | 180 | 279 | 132 | 228 | 1.82e-21 | 95.9 |
| MS.gene034122.t1 | MTR_1g019340 | 48.000 | 100 | 49 | 1 | 180 | 279 | 132 | 228 | 1.94e-21 | 95.9 |
| MS.gene034122.t1 | MTR_2g081100 | 83.784 | 37 | 6 | 0 | 11 | 47 | 520 | 556 | 2.12e-11 | 65.9 |
| MS.gene034122.t1 | MTR_2g081100 | 83.784 | 37 | 6 | 0 | 11 | 47 | 520 | 556 | 2.59e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034122.t1 | AT4G14350 | 58.036 | 112 | 43 | 2 | 168 | 279 | 132 | 239 | 1.27e-32 | 128 |
| MS.gene034122.t1 | AT4G14350 | 58.036 | 112 | 43 | 2 | 168 | 279 | 132 | 239 | 1.27e-32 | 128 |
| MS.gene034122.t1 | AT4G14350 | 58.036 | 112 | 43 | 2 | 168 | 279 | 132 | 239 | 1.27e-32 | 128 |
| MS.gene034122.t1 | AT4G14350 | 58.036 | 112 | 43 | 2 | 168 | 279 | 132 | 239 | 1.30e-32 | 128 |
| MS.gene034122.t1 | AT3G23310 | 57.143 | 112 | 44 | 2 | 168 | 279 | 133 | 240 | 1.68e-32 | 128 |
| MS.gene034122.t1 | AT1G03920 | 51.969 | 127 | 56 | 3 | 168 | 293 | 37 | 159 | 9.75e-31 | 122 |
| MS.gene034122.t1 | AT1G03920 | 51.969 | 127 | 56 | 3 | 168 | 293 | 150 | 272 | 1.07e-30 | 123 |
| MS.gene034122.t1 | AT1G03920 | 51.969 | 127 | 56 | 3 | 168 | 293 | 150 | 272 | 1.07e-30 | 123 |
| MS.gene034122.t1 | AT2G20470 | 49.606 | 127 | 59 | 3 | 168 | 293 | 137 | 259 | 1.08e-28 | 117 |
| MS.gene034122.t1 | AT2G20470 | 49.606 | 127 | 59 | 3 | 168 | 293 | 137 | 259 | 1.30e-28 | 117 |
| MS.gene034122.t1 | AT2G20470 | 49.606 | 127 | 59 | 3 | 168 | 293 | 137 | 259 | 1.30e-28 | 117 |
| MS.gene034122.t1 | AT1G30640 | 52.679 | 112 | 49 | 3 | 168 | 279 | 133 | 240 | 9.61e-25 | 105 |
| MS.gene034122.t1 | AT1G30640 | 52.679 | 112 | 49 | 3 | 168 | 279 | 133 | 240 | 9.61e-25 | 105 |
| MS.gene034122.t1 | AT1G30640 | 52.679 | 112 | 49 | 3 | 168 | 279 | 40 | 147 | 1.04e-24 | 105 |
| MS.gene034122.t1 | AT4G33080 | 48.214 | 112 | 54 | 2 | 168 | 279 | 107 | 214 | 6.78e-23 | 100 |
| MS.gene034122.t1 | AT4G33080 | 48.214 | 112 | 54 | 2 | 168 | 279 | 107 | 214 | 8.09e-23 | 100 |
| MS.gene034122.t1 | AT2G19400 | 47.244 | 127 | 62 | 3 | 168 | 293 | 118 | 240 | 1.02e-22 | 99.8 |
| MS.gene034122.t1 | AT5G09890 | 47.619 | 105 | 52 | 1 | 175 | 279 | 121 | 222 | 1.67e-21 | 96.3 |
| MS.gene034122.t1 | AT5G09890 | 47.619 | 105 | 52 | 1 | 175 | 279 | 121 | 222 | 1.71e-21 | 96.3 |
Find 73 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTGTTCATTGGGTTCTTC+AGG | 0.244076 | 4.4:-89496713 | MS.gene034122:intron |
| GTGGAGTACATCTTGGTTAT+TGG | 0.250300 | 4.4:-89495839 | MS.gene034122:CDS |
| ACACGAACCTTGACTCTTAT+AGG | 0.262348 | 4.4:-89497957 | MS.gene034122:CDS |
| GTCATATACAATTTGTTATT+AGG | 0.275758 | 4.4:-89497805 | MS.gene034122:intron |
| GGTGGTGACCACATGGATTC+AGG | 0.293493 | 4.4:+89498117 | None:intergenic |
| GATTCTTAAGCTGTGTTCAT+TGG | 0.308156 | 4.4:-89496723 | MS.gene034122:CDS |
| GTCCTGATTGCAAAGAGATA+TGG | 0.347340 | 4.4:-89497849 | MS.gene034122:CDS |
| GGACATTTGTTGGTTGCCTT+GGG | 0.362241 | 4.4:-89496179 | MS.gene034122:CDS |
| GATGAAGCTAAGTTGTATAT+CGG | 0.363602 | 4.4:-89496809 | MS.gene034122:CDS |
| ATGTTTACGAATAGACTCTA+TGG | 0.366298 | 4.4:+89496772 | None:intergenic |
| TGAACACAGCTTAAGAATCT+TGG | 0.366599 | 4.4:+89496727 | None:intergenic |
| CTTATCTCTTTATTCCGTAC+AGG | 0.373870 | 4.4:-89498553 | MS.gene034122:CDS |
| CCTTTCCGACCTCTGGTGCT+TGG | 0.384030 | 4.4:+89498444 | None:intergenic |
| TGGACATTTGTTGGTTGCCT+TGG | 0.385662 | 4.4:-89496180 | MS.gene034122:CDS |
| ATTGCGAAAGAGTTAAATAA+TGG | 0.386315 | 4.4:-89497156 | MS.gene034122:CDS |
| TCCCATATCTCTTTGCAATC+AGG | 0.392055 | 4.4:+89497847 | None:intergenic |
| CACGAACCTTGACTCTTATA+GGG | 0.392553 | 4.4:-89497956 | MS.gene034122:intron |
| GTGAAGGAAATAATGACAAC+AGG | 0.395662 | 4.4:+89498205 | None:intergenic |
| ATTCTTAAGCTGTGTTCATT+GGG | 0.416053 | 4.4:-89496722 | MS.gene034122:CDS |
| TATGGAGCAGAACCATCCTT+TGG | 0.428138 | 4.4:+89495776 | None:intergenic |
| ATGAAGCTAAGTTGTATATC+GGG | 0.428346 | 4.4:-89496808 | MS.gene034122:CDS |
| TTGTTGGTTGCCTTGGGGTA+TGG | 0.433590 | 4.4:-89496173 | MS.gene034122:CDS |
| TCCTGATTGCAAAGAGATAT+GGG | 0.444378 | 4.4:-89497848 | MS.gene034122:CDS |
| GAACACAGCTTAAGAATCTT+GGG | 0.445077 | 4.4:+89496728 | None:intergenic |
| TGGAGAAATTTCTTTCCCTA+TGG | 0.450330 | 4.4:-89498083 | MS.gene034122:intron |
| CGAGTATTTATATCTCATAA+TGG | 0.455404 | 4.4:-89496891 | MS.gene034122:CDS |
| TCATCATCGCTGAAGGAAAC+CGG | 0.458878 | 4.4:+89498495 | None:intergenic |
| CAACGTCATCATATCTCCAC+TGG | 0.470628 | 4.4:+89496859 | None:intergenic |
| AGCATTTCTATTGTTAGTGA+AGG | 0.484429 | 4.4:+89498189 | None:intergenic |
| AATCTGCTAAGATGAATGTC+TGG | 0.487923 | 4.4:+89496114 | None:intergenic |
| TACAGCTAGAGCTGATAGTC+CGG | 0.496465 | 4.4:-89498514 | MS.gene034122:CDS |
| TTCTATCAACTTCTGCAAGA+AGG | 0.496737 | 4.4:+89496961 | None:intergenic |
| GTCACCACCAGTGTTGGTTG+TGG | 0.497369 | 4.4:-89498103 | MS.gene034122:CDS |
| GTGGTGACCACATGGATTCA+GGG | 0.502810 | 4.4:+89498118 | None:intergenic |
| AGATACCCGTGGACATTTGT+TGG | 0.509868 | 4.4:-89496189 | MS.gene034122:CDS |
| AAGAGATAAGCTAAGAATGA+AGG | 0.511539 | 4.4:+89498566 | None:intergenic |
| TTATCTCTTTATTCCGTACA+GGG | 0.516748 | 4.4:-89498552 | MS.gene034122:CDS |
| TAAATACTCGTCATCTTGAA+AGG | 0.518616 | 4.4:+89496904 | None:intergenic |
| AATAATGACAACAGGGTTGG+AGG | 0.525929 | 4.4:+89498213 | None:intergenic |
| TCTGTTACTATTATGTCAAG+AGG | 0.527285 | 4.4:-89496091 | MS.gene034122:intron |
| GGAAATAATGACAACAGGGT+TGG | 0.541831 | 4.4:+89498210 | None:intergenic |
| GTCGCTGCTGCGGAATATCA+AGG | 0.544183 | 4.4:-89495811 | MS.gene034122:CDS |
| GTCATCTATGTTTAATGCAG+AGG | 0.549637 | 4.4:+89498161 | None:intergenic |
| CAACACTGGTGGTGACCACA+TGG | 0.551919 | 4.4:+89498110 | None:intergenic |
| GTATGGTTTATGACCGTCGA+TGG | 0.558675 | 4.4:-89496156 | MS.gene034122:CDS |
| GGCATCTTCATCATCGCTGA+AGG | 0.569407 | 4.4:+89498488 | None:intergenic |
| TCGGCCTTGAAAACCCTGTA+CGG | 0.580392 | 4.4:+89498539 | None:intergenic |
| AATTTCTCCACAACCAACAC+TGG | 0.581758 | 4.4:+89498096 | None:intergenic |
| TTGGATATGTCAAGTCTGAA+AGG | 0.582044 | 4.4:-89496986 | MS.gene034122:CDS |
| TATCAGCTCTAGCTGTACTT+CGG | 0.599995 | 4.4:+89498520 | None:intergenic |
| TCTTTCGCAATGTGAAACTC+CGG | 0.605862 | 4.4:+89497168 | None:intergenic |
| TTCGCAATGTGAAACTCCGG+AGG | 0.606544 | 4.4:+89497171 | None:intergenic |
| GGCAACCAACAAATGTCCAC+GGG | 0.610059 | 4.4:+89496184 | None:intergenic |
| AGCTCAAAACCAAGCACCAG+AGG | 0.612912 | 4.4:-89498453 | MS.gene034122:intron |
| AGGCAACCAACAAATGTCCA+CGG | 0.615244 | 4.4:+89496183 | None:intergenic |
| TTGAGTCGATTCAGCCACAA+TGG | 0.616343 | 4.4:-89498277 | MS.gene034122:intron |
| ATATGATGACGTTGCTGATG+CGG | 0.617376 | 4.4:-89496850 | MS.gene034122:CDS |
| CTTATGAGTCATCCAAAGGA+TGG | 0.622364 | 4.4:-89495788 | MS.gene034122:CDS |
| CACCAGGTGTTAGATACCCG+TGG | 0.624596 | 4.4:-89496200 | MS.gene034122:intron |
| ATTGGACATAGTCGCTGCTG+CGG | 0.624668 | 4.4:-89495821 | MS.gene034122:CDS |
| AAATTACCCTATAAGAGTCA+AGG | 0.629943 | 4.4:+89497950 | None:intergenic |
| GACATTTGTTGGTTGCCTTG+GGG | 0.633865 | 4.4:-89496178 | MS.gene034122:CDS |
| AAGGCTTATGAGTCATCCAA+AGG | 0.646224 | 4.4:-89495792 | MS.gene034122:CDS |
| TTCTCCACAACCAACACTGG+TGG | 0.646868 | 4.4:+89498099 | None:intergenic |
| AACGTCATCATATCTCCACT+GGG | 0.651072 | 4.4:+89496860 | None:intergenic |
| CATGTGGTCACCACCAGTGT+TGG | 0.651332 | 4.4:-89498109 | MS.gene034122:CDS |
| TGAAGCTAAGTTGTATATCG+GGG | 0.667273 | 4.4:-89496807 | MS.gene034122:CDS |
| CGGTCATAAACCATACCCCA+AGG | 0.669024 | 4.4:+89496163 | None:intergenic |
| TGAAGGAAATAATGACAACA+GGG | 0.671539 | 4.4:+89498206 | None:intergenic |
| TCGCAATGTGAAACTCCGGA+GGG | 0.678985 | 4.4:+89497172 | None:intergenic |
| ATAATGGAGTATCTACCCAG+TGG | 0.705024 | 4.4:-89496875 | MS.gene034122:CDS |
| TCTGAGATAAGAACCATCGA+CGG | 0.706064 | 4.4:+89496143 | None:intergenic |
| ATAAAATCCCTGAATCCATG+TGG | 0.711354 | 4.4:-89498125 | MS.gene034122:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAATAATTACATTTTTC+AGG | - | chr4.4:89498484-89498503 | MS.gene034122:CDS | 10.0% |
| !!! | ATTATTTTCTTTTAATTATC+AGG | - | chr4.4:89497316-89497335 | MS.gene034122:intron | 10.0% |
| !! | AAAATATTAGGAAAATTCAT+TGG | - | chr4.4:89496600-89496619 | MS.gene034122:intron | 15.0% |
| !! | GATGAAATTGTAAAAATATT+AGG | - | chr4.4:89496588-89496607 | MS.gene034122:intron | 15.0% |
| !! | GTAATTTGATGAAATATTTA+TGG | - | chr4.4:89496411-89496430 | MS.gene034122:intron | 15.0% |
| !!! | AATAAAATTAAAGTACCATA+GGG | + | chr4.4:89496280-89496299 | None:intergenic | 15.0% |
| !!! | TAATAAAATTAAAGTACCAT+AGG | + | chr4.4:89496281-89496300 | None:intergenic | 15.0% |
| !!! | TTTTTTCTTTTAGAAAGATA+TGG | + | chr4.4:89498469-89498488 | None:intergenic | 15.0% |
| !! | AGTAATTGTAAAGTTCAATA+TGG | + | chr4.4:89496357-89496376 | None:intergenic | 20.0% |
| !! | GAATTTGTAATCCTAATTTA+AGG | + | chr4.4:89495976-89495995 | None:intergenic | 20.0% |
| !!! | AAATAATTACATTTTTCAGG+TGG | - | chr4.4:89498487-89498506 | MS.gene034122:CDS | 20.0% |
| !!! | AGTTATTGAACTTATTTTCT+TGG | - | chr4.4:89497073-89497092 | MS.gene034122:intron | 20.0% |
| !!! | GTCATATACAATTTGTTATT+AGG | - | chr4.4:89496540-89496559 | MS.gene034122:intron | 20.0% |
| !!! | GTTAATTTATTTTGACCATT+TGG | - | chr4.4:89496742-89496761 | MS.gene034122:CDS | 20.0% |
| ! | ATATTCATAAGCTATACTTG+AGG | + | chr4.4:89496935-89496954 | None:intergenic | 25.0% |
| ! | ATTGCGAAAGAGTTAAATAA+TGG | - | chr4.4:89497189-89497208 | MS.gene034122:CDS | 25.0% |
| ! | CGAGTATTTATATCTCATAA+TGG | - | chr4.4:89497454-89497473 | MS.gene034122:intron | 25.0% |
| ! | CTATACTTATACCATTGAAA+AGG | + | chr4.4:89497799-89497818 | None:intergenic | 25.0% |
| ! | CTATATATTGAGTTTGATCA+AGG | + | chr4.4:89496651-89496670 | None:intergenic | 25.0% |
| ! | GAACTTTACAATTACTATCT+AGG | - | chr4.4:89496361-89496380 | MS.gene034122:intron | 25.0% |
| ! | TAATTAGGAGATTACAGATT+CGG | + | chr4.4:89497949-89497968 | None:intergenic | 25.0% |
| ! | TAGGTAGACATTAGAAAAAA+TGG | - | chr4.4:89496559-89496578 | MS.gene034122:intron | 25.0% |
| ! | TGATGAAATATTTATGGCAT+GGG | - | chr4.4:89496417-89496436 | MS.gene034122:intron | 25.0% |
| ! | TTGATGAAATATTTATGGCA+TGG | - | chr4.4:89496416-89496435 | MS.gene034122:intron | 25.0% |
| !! | TAAATTTGAAACTGTATCAG+AGG | + | chr4.4:89497693-89497712 | None:intergenic | 25.0% |
| !!! | ATAGCTAAGCCATTTTTTAA+AGG | - | chr4.4:89497815-89497834 | MS.gene034122:CDS | 25.0% |
| !!! | GATTTTTGACTCTAATTCTA+CGG | - | chr4.4:89498411-89498430 | MS.gene034122:intron | 25.0% |
| !!! | TATTGAACTTATTTTCTTGG+TGG | - | chr4.4:89497076-89497095 | MS.gene034122:intron | 25.0% |
| !!! | TTATTTTGACCATTTGGTAA+TGG | - | chr4.4:89496748-89496767 | MS.gene034122:CDS | 25.0% |
| AAATATGTTGGAAACGGTTT+GGG | - | chr4.4:89496681-89496700 | MS.gene034122:intron | 30.0% | |
| AAATTACCCTATAAGAGTCA+AGG | + | chr4.4:89496398-89496417 | None:intergenic | 30.0% | |
| AAGAGATAAGCTAAGAATGA+AGG | + | chr4.4:89495782-89495801 | None:intergenic | 30.0% | |
| AATTAGGAGATTACAGATTC+GGG | + | chr4.4:89497948-89497967 | None:intergenic | 30.0% | |
| AGAAAATCCGACAAATATGT+TGG | - | chr4.4:89496669-89496688 | MS.gene034122:intron | 30.0% | |
| AGCATTTCTATTGTTAGTGA+AGG | + | chr4.4:89496159-89496178 | None:intergenic | 30.0% | |
| ATGAAGCTAAGTTGTATATC+GGG | - | chr4.4:89497537-89497556 | MS.gene034122:intron | 30.0% | |
| ATGTTTACGAATAGACTCTA+TGG | + | chr4.4:89497576-89497595 | None:intergenic | 30.0% | |
| ATTCTTAAGCTGTGTTCATT+GGG | - | chr4.4:89497623-89497642 | MS.gene034122:intron | 30.0% | |
| CAAAGTAACCCAGAAAAATT+TGG | + | chr4.4:89496021-89496040 | None:intergenic | 30.0% | |
| CTTATTTCAATAAGCTCTCT+AGG | - | chr4.4:89496964-89496983 | MS.gene034122:CDS | 30.0% | |
| GATGAAATATTTATGGCATG+GGG | - | chr4.4:89496418-89496437 | MS.gene034122:intron | 30.0% | |
| GATGAAGCTAAGTTGTATAT+CGG | - | chr4.4:89497536-89497555 | MS.gene034122:intron | 30.0% | |
| GGGGAAATAAACCTTAAATT+AGG | - | chr4.4:89495962-89495981 | MS.gene034122:intron | 30.0% | |
| GGGTTATATGTTGTGTTTAA+GGG | - | chr4.4:89496785-89496804 | MS.gene034122:CDS | 30.0% | |
| TAAATACTCGTCATCTTGAA+AGG | + | chr4.4:89497444-89497463 | None:intergenic | 30.0% | |
| TATCTTTCACATTACAGACA+AGG | + | chr4.4:89497913-89497932 | None:intergenic | 30.0% | |
| TCATACAATGTGCATTGAAT+AGG | + | chr4.4:89497104-89497123 | None:intergenic | 30.0% | |
| TCTGTAATCTCCTAATTACA+TGG | - | chr4.4:89497951-89497970 | MS.gene034122:intron | 30.0% | |
| TCTGTTACTATTATGTCAAG+AGG | - | chr4.4:89498254-89498273 | MS.gene034122:CDS | 30.0% | |
| TGAAGGAAATAATGACAACA+GGG | + | chr4.4:89496142-89496161 | None:intergenic | 30.0% | |
| TGTTACATTGTTTGTGTGTT+CGG | - | chr4.4:89497987-89498006 | MS.gene034122:intron | 30.0% | |
| TTATCTCTTTATTCCGTACA+GGG | - | chr4.4:89495793-89495812 | MS.gene034122:CDS | 30.0% | |
| ! | AAACAGACTATTCTTTTGCA+TGG | + | chr4.4:89497052-89497071 | None:intergenic | 30.0% |
| ! | AGAAAGAGTATGTTAGTAGA+AGG | + | chr4.4:89498123-89498142 | None:intergenic | 30.0% |
| ! | AGTCTTTCTTTCCTTTTCAA+TGG | - | chr4.4:89497785-89497804 | MS.gene034122:intron | 30.0% |
| ! | TCTTAATGTGTCATTAACTG+TGG | + | chr4.4:89498393-89498412 | None:intergenic | 30.0% |
| ! | TTCAAGAAACTTTTCCATTG+TGG | + | chr4.4:89496085-89496104 | None:intergenic | 30.0% |
| !! | AGGTGCTTGTGTTTTTAATT+AGG | - | chr4.4:89497336-89497355 | MS.gene034122:intron | 30.0% |
| !! | GCTTGTGTTTTTAATTAGGT+TGG | - | chr4.4:89497340-89497359 | MS.gene034122:intron | 30.0% |
| AAGTAGACCTGATTAAATGC+AGG | + | chr4.4:89498299-89498318 | None:intergenic | 35.0% | |
| AATATGTTGGAAACGGTTTG+GGG | - | chr4.4:89496682-89496701 | MS.gene034122:intron | 35.0% | |
| AATCTGCTAAGATGAATGTC+TGG | + | chr4.4:89498234-89498253 | None:intergenic | 35.0% | |
| ACCGTTTCCAACATATTTGT+CGG | + | chr4.4:89496679-89496698 | None:intergenic | 35.0% | |
| AGAAGCAAAACTAATTGAGC+AGG | + | chr4.4:89496312-89496331 | None:intergenic | 35.0% | |
| AGTAGACCTGATTAAATGCA+GGG | + | chr4.4:89498298-89498317 | None:intergenic | 35.0% | |
| ATAAAATCCCTGAATCCATG+TGG | - | chr4.4:89496220-89496239 | MS.gene034122:intron | 35.0% | |
| ATATTCCACTCCTTGATCAA+CGG | + | chr4.4:89497744-89497763 | None:intergenic | 35.0% | |
| CAAATATGTTGGAAACGGTT+TGG | - | chr4.4:89496680-89496699 | MS.gene034122:intron | 35.0% | |
| CACACAAACAATGTAACAGA+TGG | + | chr4.4:89497985-89498004 | None:intergenic | 35.0% | |
| CATCATTGACAGAAACATCT+TGG | - | chr4.4:89495995-89496014 | MS.gene034122:intron | 35.0% | |
| CTTATCTCTTTATTCCGTAC+AGG | - | chr4.4:89495792-89495811 | MS.gene034122:CDS | 35.0% | |
| GAACACAGCTTAAGAATCTT+GGG | + | chr4.4:89497620-89497639 | None:intergenic | 35.0% | |
| GATTCTTAAGCTGTGTTCAT+TGG | - | chr4.4:89497622-89497641 | MS.gene034122:intron | 35.0% | |
| GGAGATGAAAAACTTTGATG+TGG | - | chr4.4:89496518-89496537 | MS.gene034122:intron | 35.0% | |
| GGGAAAGACAACTCAAAAAA+TGG | + | chr4.4:89497723-89497742 | None:intergenic | 35.0% | |
| GGGGTTATATGTTGTGTTTA+AGG | - | chr4.4:89496784-89496803 | MS.gene034122:CDS | 35.0% | |
| GTAGTCTACAATAGACAAGA+CGG | - | chr4.4:89497882-89497901 | MS.gene034122:intron | 35.0% | |
| GTCATCTATGTTTAATGCAG+AGG | + | chr4.4:89496187-89496206 | None:intergenic | 35.0% | |
| GTGAAGGAAATAATGACAAC+AGG | + | chr4.4:89496143-89496162 | None:intergenic | 35.0% | |
| GTGTAAACAATGAACCTGAT+AGG | + | chr4.4:89496044-89496063 | None:intergenic | 35.0% | |
| GTTGTGTTTAAGGGCTTATT+TGG | - | chr4.4:89496794-89496813 | MS.gene034122:CDS | 35.0% | |
| GTTTAAGGGCTTATTTGGAT+TGG | - | chr4.4:89496799-89496818 | MS.gene034122:CDS | 35.0% | |
| TAGGGAAATGAGTTAGAAAC+AGG | + | chr4.4:89496908-89496927 | None:intergenic | 35.0% | |
| TCCGACAAATATGTTGGAAA+CGG | - | chr4.4:89496675-89496694 | MS.gene034122:intron | 35.0% | |
| TCCTGATTGCAAAGAGATAT+GGG | - | chr4.4:89496497-89496516 | MS.gene034122:intron | 35.0% | |
| TGAACACAGCTTAAGAATCT+TGG | + | chr4.4:89497621-89497640 | None:intergenic | 35.0% | |
| TGAAGCTAAGTTGTATATCG+GGG | - | chr4.4:89497538-89497557 | MS.gene034122:intron | 35.0% | |
| TGGAGAAATTTCTTTCCCTA+TGG | - | chr4.4:89496262-89496281 | MS.gene034122:intron | 35.0% | |
| TTCTATCAACTTCTGCAAGA+AGG | + | chr4.4:89497387-89497406 | None:intergenic | 35.0% | |
| TTGGATATGTCAAGTCTGAA+AGG | - | chr4.4:89497359-89497378 | MS.gene034122:intron | 35.0% | |
| ! | ACATCAGATTGATAGTCATC+TGG | - | chr4.4:89498024-89498043 | MS.gene034122:intron | 35.0% |
| ! | ACATCTTGGCCAAATTTTTC+TGG | - | chr4.4:89496009-89496028 | MS.gene034122:intron | 35.0% |
| ! | AGGGATTTTATCTAGCAAGT+TGG | + | chr4.4:89496211-89496230 | None:intergenic | 35.0% |
| ! | CACAGGTTGCCTTTAAAAAA+TGG | + | chr4.4:89497827-89497846 | None:intergenic | 35.0% |
| ! | CATCAGATTGATAGTCATCT+GGG | - | chr4.4:89498025-89498044 | MS.gene034122:intron | 35.0% |
| ! | CATCTTGGCCAAATTTTTCT+GGG | - | chr4.4:89496010-89496029 | MS.gene034122:intron | 35.0% |
| !! | GAAAGAAATGTGTTTTTGCC+TGG | - | chr4.4:89496622-89496641 | MS.gene034122:intron | 35.0% |
| !! | TTTGACCATTTGGTAATGGA+TGG | - | chr4.4:89496752-89496771 | MS.gene034122:CDS | 35.0% |
| !! | TTTTGACTCTAATTCTACGG+CGG | - | chr4.4:89498414-89498433 | MS.gene034122:intron | 35.0% |
| !!! | AGGTTTTTCTGGTTTCAGTT+TGG | + | chr4.4:89496115-89496134 | None:intergenic | 35.0% |
| !!! | CTTTGGTTTTGTAGATTGCT+TGG | - | chr4.4:89498078-89498097 | MS.gene034122:intron | 35.0% |
| !!! | TTGTTTTTGCATCGACACTT+TGG | - | chr4.4:89498061-89498080 | MS.gene034122:intron | 35.0% |
| !!! | TTTTTCTGGTTTCAGTTTGG+TGG | + | chr4.4:89496112-89496131 | None:intergenic | 35.0% |
| AACATACTCTTTCTTGCACC+AGG | - | chr4.4:89498129-89498148 | MS.gene034122:CDS | 40.0% | |
| AACGTCATCATATCTCCACT+GGG | + | chr4.4:89497488-89497507 | None:intergenic | 40.0% | |
| AAGCTATACTTGAGGAGCTT+AGG | + | chr4.4:89496927-89496946 | None:intergenic | 40.0% | |
| AAGGCTTATGAGTCATCCAA+AGG | - | chr4.4:89498553-89498572 | MS.gene034122:CDS | 40.0% | |
| AATAATGACAACAGGGTTGG+AGG | + | chr4.4:89496135-89496154 | None:intergenic | 40.0% | |
| AATTTCTCCACAACCAACAC+TGG | + | chr4.4:89496252-89496271 | None:intergenic | 40.0% | |
| ACACGAACCTTGACTCTTAT+AGG | - | chr4.4:89496388-89496407 | MS.gene034122:intron | 40.0% | |
| AGCATCTCTGACTTAACTCA+CGG | + | chr4.4:89497250-89497269 | None:intergenic | 40.0% | |
| AGCTATACTTGAGGAGCTTA+GGG | + | chr4.4:89496926-89496945 | None:intergenic | 40.0% | |
| CACGAACCTTGACTCTTATA+GGG | - | chr4.4:89496389-89496408 | MS.gene034122:intron | 40.0% | |
| CTTATGAGTCATCCAAAGGA+TGG | - | chr4.4:89498557-89498576 | MS.gene034122:CDS | 40.0% | |
| GGAAATAATGACAACAGGGT+TGG | + | chr4.4:89496138-89496157 | None:intergenic | 40.0% | |
| GTACAACCCTGCATTTAATC+AGG | - | chr4.4:89498289-89498308 | MS.gene034122:intron | 40.0% | |
| GTCCTGATTGCAAAGAGATA+TGG | - | chr4.4:89496496-89496515 | MS.gene034122:intron | 40.0% | |
| GTGGAGTACATCTTGGTTAT+TGG | - | chr4.4:89498506-89498525 | MS.gene034122:CDS | 40.0% | |
| TATTCCACTCCTTGATCAAC+GGG | + | chr4.4:89497743-89497762 | None:intergenic | 40.0% | |
| TCCCATATCTCTTTGCAATC+AGG | + | chr4.4:89496501-89496520 | None:intergenic | 40.0% | |
| TCCTTCCATCCATTACCAAA+TGG | + | chr4.4:89496760-89496779 | None:intergenic | 40.0% | |
| TCTTTCGCAATGTGAAACTC+CGG | + | chr4.4:89497180-89497199 | None:intergenic | 40.0% | |
| ! | ATAATGGAGTATCTACCCAG+TGG | - | chr4.4:89497470-89497489 | MS.gene034122:intron | 40.0% |
| ! | ATATGATGACGTTGCTGATG+CGG | - | chr4.4:89497495-89497514 | MS.gene034122:intron | 40.0% |
| ! | TAATGGATGGAAGGAGAATG+GGG | - | chr4.4:89496765-89496784 | MS.gene034122:CDS | 40.0% |
| ! | TATCAGCTCTAGCTGTACTT+CGG | + | chr4.4:89495828-89495847 | None:intergenic | 40.0% |
| ! | TATTCCGTACAGGGTTTTCA+AGG | - | chr4.4:89495802-89495821 | MS.gene034122:CDS | 40.0% |
| ! | TCTGAGATAAGAACCATCGA+CGG | + | chr4.4:89498205-89498224 | None:intergenic | 40.0% |
| ! | TTTTGAGCTTGATGTTGGCA+TGG | + | chr4.4:89495881-89495900 | None:intergenic | 40.0% |
| !! | AAAACAACGCTTTAGAGCAC+AGG | + | chr4.4:89497844-89497863 | None:intergenic | 40.0% |
| !! | ACCATTTGGTAATGGATGGA+AGG | - | chr4.4:89496756-89496775 | MS.gene034122:CDS | 40.0% |
| !! | GTAATGGATGGAAGGAGAAT+GGG | - | chr4.4:89496764-89496783 | MS.gene034122:CDS | 40.0% |
| !!! | CTTGGTTTTGAGCTTGATGT+TGG | + | chr4.4:89495886-89495905 | None:intergenic | 40.0% |
| !!! | TTTTCAGGTGGAGTACATCT+TGG | - | chr4.4:89498499-89498518 | MS.gene034122:CDS | 40.0% |
| AAGTCAGAGATGCTTCGTAG+AGG | - | chr4.4:89497256-89497275 | MS.gene034122:intron | 45.0% | |
| AGACTACAACGCATGCACAA+TGG | + | chr4.4:89497869-89497888 | None:intergenic | 45.0% | |
| AGATACCCGTGGACATTTGT+TGG | - | chr4.4:89498156-89498175 | MS.gene034122:CDS | 45.0% | |
| AGGCAACCAACAAATGTCCA+CGG | + | chr4.4:89498165-89498184 | None:intergenic | 45.0% | |
| CAAACTACAACCAGAGGAAG+AGG | - | chr4.4:89495937-89495956 | MS.gene034122:intron | 45.0% | |
| CAACGTCATCATATCTCCAC+TGG | + | chr4.4:89497489-89497508 | None:intergenic | 45.0% | |
| CTGTGTTCATTGGGTTCTTC+AGG | - | chr4.4:89497632-89497651 | MS.gene034122:intron | 45.0% | |
| GACTACAACGCATGCACAAT+GGG | + | chr4.4:89497868-89497887 | None:intergenic | 45.0% | |
| GCATCTCAAACTACAACCAG+AGG | - | chr4.4:89495931-89495950 | MS.gene034122:intron | 45.0% | |
| GCTTCGTAGAGGACATGTAT+TGG | - | chr4.4:89497267-89497286 | MS.gene034122:intron | 45.0% | |
| GGAGTTGCTGCCATGTAATT+AGG | + | chr4.4:89497964-89497983 | None:intergenic | 45.0% | |
| GTATGGTTTATGACCGTCGA+TGG | - | chr4.4:89498189-89498208 | MS.gene034122:CDS | 45.0% | |
| GTTGTCTTTCCCGTTGATCA+AGG | - | chr4.4:89497731-89497750 | MS.gene034122:intron | 45.0% | |
| TACAACCAGAGGAAGAGGAA+GGG | - | chr4.4:89495942-89495961 | MS.gene034122:intron | 45.0% | |
| TACAGCTAGAGCTGATAGTC+CGG | - | chr4.4:89495831-89495850 | MS.gene034122:CDS | 45.0% | |
| TATGGAGCAGAACCATCCTT+TGG | + | chr4.4:89498572-89498591 | None:intergenic | 45.0% | |
| TCATCATCGCTGAAGGAAAC+CGG | + | chr4.4:89495853-89495872 | None:intergenic | 45.0% | |
| ! | AACAGGGTTGGAGGTTTTTC+TGG | + | chr4.4:89496126-89496145 | None:intergenic | 45.0% |
| ! | AGCTGTCTTTCTTTTCCCTC+CGG | - | chr4.4:89497158-89497177 | MS.gene034122:CDS | 45.0% |
| ! | GACATTTGTTGGTTGCCTTG+GGG | - | chr4.4:89498167-89498186 | MS.gene034122:CDS | 45.0% |
| ! | GGACATTTGTTGGTTGCCTT+GGG | - | chr4.4:89498166-89498185 | MS.gene034122:CDS | 45.0% |
| ! | TCTGGGTTACTTTGCCTATC+AGG | - | chr4.4:89496027-89496046 | MS.gene034122:intron | 45.0% |
| ! | TGAGTTTGATCAAGGCATCC+AGG | + | chr4.4:89496643-89496662 | None:intergenic | 45.0% |
| ! | TGGACATTTGTTGGTTGCCT+TGG | - | chr4.4:89498165-89498184 | MS.gene034122:CDS | 45.0% |
| ! | TTGAGTCGATTCAGCCACAA+TGG | - | chr4.4:89496068-89496087 | MS.gene034122:intron | 45.0% |
| !! | GGTAATGGATGGAAGGAGAA+TGG | - | chr4.4:89496763-89496782 | MS.gene034122:CDS | 45.0% |
| AACAGATCCTTTCCGACCTC+TGG | + | chr4.4:89495911-89495930 | None:intergenic | 50.0% | |
| ACAACCAGAGGAAGAGGAAG+GGG | - | chr4.4:89495943-89495962 | MS.gene034122:intron | 50.0% | |
| AGCTCAAAACCAAGCACCAG+AGG | - | chr4.4:89495892-89495911 | MS.gene034122:intron | 50.0% | |
| ATTGGACATAGTCGCTGCTG+CGG | - | chr4.4:89498524-89498543 | MS.gene034122:CDS | 50.0% | |
| ATTTCCCCTTCCTCTTCCTC+TGG | + | chr4.4:89495950-89495969 | None:intergenic | 50.0% | |
| CAAAACCAAGCACCAGAGGT+CGG | - | chr4.4:89495896-89495915 | MS.gene034122:intron | 50.0% | |
| CGGTCATAAACCATACCCCA+AGG | + | chr4.4:89498185-89498204 | None:intergenic | 50.0% | |
| CTACAACCAGAGGAAGAGGA+AGG | - | chr4.4:89495941-89495960 | MS.gene034122:intron | 50.0% | |
| CTCTAATTCTACGGCGGATG+AGG | - | chr4.4:89498420-89498439 | MS.gene034122:intron | 50.0% | |
| CTTTCCCGTTGATCAAGGAG+TGG | - | chr4.4:89497736-89497755 | MS.gene034122:intron | 50.0% | |
| GGCAACCAACAAATGTCCAC+GGG | + | chr4.4:89498164-89498183 | None:intergenic | 50.0% | |
| GGCATCTTCATCATCGCTGA+AGG | + | chr4.4:89495860-89495879 | None:intergenic | 50.0% | |
| GTGGTGACCACATGGATTCA+GGG | + | chr4.4:89496230-89496249 | None:intergenic | 50.0% | |
| TCGCAATGTGAAACTCCGGA+GGG | + | chr4.4:89497176-89497195 | None:intergenic | 50.0% | |
| TCGGCCTTGAAAACCCTGTA+CGG | + | chr4.4:89495809-89495828 | None:intergenic | 50.0% | |
| TTCGCAATGTGAAACTCCGG+AGG | + | chr4.4:89497177-89497196 | None:intergenic | 50.0% | |
| TTCTCCACAACCAACACTGG+TGG | + | chr4.4:89496249-89496268 | None:intergenic | 50.0% | |
| ! | AACGGTTTGGGGATAACTGC+AGG | - | chr4.4:89496693-89496712 | MS.gene034122:intron | 50.0% |
| ! | ACGGTTTGGGGATAACTGCA+GGG | - | chr4.4:89496694-89496713 | MS.gene034122:intron | 50.0% |
| ! | TTGTTGGTTGCCTTGGGGTA+TGG | - | chr4.4:89498172-89498191 | MS.gene034122:CDS | 50.0% |
| CACCAGGTGTTAGATACCCG+TGG | - | chr4.4:89498145-89498164 | MS.gene034122:CDS | 55.0% | |
| CATGTGGTCACCACCAGTGT+TGG | - | chr4.4:89496236-89496255 | MS.gene034122:intron | 55.0% | |
| GGTGGTGACCACATGGATTC+AGG | + | chr4.4:89496231-89496250 | None:intergenic | 55.0% | |
| GTCCACGGGTATCTAACACC+TGG | + | chr4.4:89498150-89498169 | None:intergenic | 55.0% | |
| GTCGCTGCTGCGGAATATCA+AGG | - | chr4.4:89498534-89498553 | MS.gene034122:CDS | 55.0% | |
| ! | CAACACTGGTGGTGACCACA+TGG | + | chr4.4:89496238-89496257 | None:intergenic | 55.0% |
| !! | GTCACCACCAGTGTTGGTTG+TGG | - | chr4.4:89496242-89496261 | MS.gene034122:intron | 55.0% |
| CCAAGCACCAGAGGTCGGAA+AGG | - | chr4.4:89495901-89495920 | MS.gene034122:intron | 60.0% | |
| CCTTTCCGACCTCTGGTGCT+TGG | + | chr4.4:89495904-89495923 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 89495775 | 89498592 | 89495775 | ID=MS.gene034122 |
| chr4.4 | mRNA | 89495775 | 89498592 | 89495775 | ID=MS.gene034122.t1;Parent=MS.gene034122 |
| chr4.4 | exon | 89498454 | 89498592 | 89498454 | ID=MS.gene034122.t1.exon1;Parent=MS.gene034122.t1 |
| chr4.4 | CDS | 89498454 | 89498592 | 89498454 | ID=cds.MS.gene034122.t1;Parent=MS.gene034122.t1 |
| chr4.4 | exon | 89498084 | 89498285 | 89498084 | ID=MS.gene034122.t1.exon2;Parent=MS.gene034122.t1 |
| chr4.4 | CDS | 89498084 | 89498285 | 89498084 | ID=cds.MS.gene034122.t1;Parent=MS.gene034122.t1 |
| chr4.4 | exon | 89497957 | 89497984 | 89497957 | ID=MS.gene034122.t1.exon3;Parent=MS.gene034122.t1 |
| chr4.4 | CDS | 89497957 | 89497984 | 89497957 | ID=cds.MS.gene034122.t1;Parent=MS.gene034122.t1 |
| chr4.4 | exon | 89497806 | 89497884 | 89497806 | ID=MS.gene034122.t1.exon4;Parent=MS.gene034122.t1 |
| chr4.4 | CDS | 89497806 | 89497884 | 89497806 | ID=cds.MS.gene034122.t1;Parent=MS.gene034122.t1 |
| chr4.4 | exon | 89497119 | 89497240 | 89497119 | ID=MS.gene034122.t1.exon5;Parent=MS.gene034122.t1 |
| chr4.4 | CDS | 89497119 | 89497240 | 89497119 | ID=cds.MS.gene034122.t1;Parent=MS.gene034122.t1 |
| chr4.4 | exon | 89496714 | 89497029 | 89496714 | ID=MS.gene034122.t1.exon6;Parent=MS.gene034122.t1 |
| chr4.4 | CDS | 89496714 | 89497029 | 89496714 | ID=cds.MS.gene034122.t1;Parent=MS.gene034122.t1 |
| chr4.4 | exon | 89496092 | 89496216 | 89496092 | ID=MS.gene034122.t1.exon7;Parent=MS.gene034122.t1 |
| chr4.4 | CDS | 89496092 | 89496216 | 89496092 | ID=cds.MS.gene034122.t1;Parent=MS.gene034122.t1 |
| chr4.4 | exon | 89495775 | 89495861 | 89495775 | ID=MS.gene034122.t1.exon8;Parent=MS.gene034122.t1 |
| chr4.4 | CDS | 89495775 | 89495861 | 89495775 | ID=cds.MS.gene034122.t1;Parent=MS.gene034122.t1 |
| Gene Sequence |
| Protein sequence |
