AlfalfaGEDB | MS.gene034147

M. sativa cultivar XinJiangDaYe / MS.gene034147

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene034147.t1	XP_003597798.2	73.6	420	97	4	1	416	1	410	2.20E-138	502.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene034147.t1	Q5KQI4	42.7	281	146	8	4	279	6	276	1.7e-43	178.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene034147.t1	G7IMD4	73.6	420	97	4	1	416	1	410	1.6e-138	502.3

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene034147.t1	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene034147.t1	MTR_2g102450	79.762	420	71	4	1	416	1	410	0.0	616
MS.gene034147.t1	MTR_2g102450	78.006	341	61	4	80	416	26	356	1.08e-170	482
MS.gene034147.t1	MTR_4g008310	88.068	176	20	1	56	230	129	304	8.37e-98	295
MS.gene034147.t1	MTR_3g101520	40.351	228	131	2	9	236	5	227	9.34e-46	158
MS.gene034147.t1	MTR_3g101520	39.912	228	124	1	9	236	5	219	1.28e-45	157
MS.gene034147.t1	MTR_4g101970	34.252	254	110	11	183	396	51	287	1.24e-19	90.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene034147.t1	AT5G58280	42.913	254	115	4	12	238	5	255	2.17e-55	186
MS.gene034147.t1	AT5G58280	43.529	255	111	5	12	238	5	254	8.15e-55	184
MS.gene034147.t1	AT5G58280	42.544	228	120	4	12	238	5	222	5.96e-49	167
MS.gene034147.t1	AT3G19184	39.442	251	127	4	12	254	8	241	6.11e-44	154
MS.gene034147.t1	AT3G19184	39.442	251	127	4	12	254	8	241	6.96e-44	154
MS.gene034147.t1	AT5G42700	39.301	229	119	5	10	233	7	220	1.66e-41	147
MS.gene034147.t1	AT5G42700	38.674	181	98	3	55	233	6	175	5.63e-33	122

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Find 65 sgRNAs with CRISPR-Local

Find 237 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAGAAAGCGATGCTT+TGG	0.444588	4.4:+90111984	MS.gene034147:CDS
AAAATAATGGAGGCTGACCT+AGG	0.559343	4.4:+90112354	MS.gene034147:CDS
AAACTGCGCTTAGTGGTGGC+TGG	0.513224	4.4:+90110665	MS.gene034147:CDS
AAAGAAAACTAGAATGCAAA+AGG	0.490045	4.4:+90112077	MS.gene034147:CDS
AAGAAAACTGCGCTTAGTGG+TGG	0.610549	4.4:+90110661	MS.gene034147:CDS
AAGGTCAAGTTCATCATCAT+GGG	0.503820	4.4:+90110156	MS.gene034147:CDS
AAGTCCAGCAAAGAAATCCA+AGG	0.643226	4.4:+90109594	MS.gene034147:CDS
AATTGGTGACTTACGTAATG+CGG	0.677990	4.4:+90112317	MS.gene034147:CDS
ACAACATTATTCTTTGATTT+TGG	0.151715	4.4:-90109716	None:intergenic
ACCATTGACTTGATAAGTGA+TGG	0.497922	4.4:-90110385	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAGAATTATATGCCAGG+TGG	+	chr4.4:90111838-90111857	MS.gene034147:intron	30.0%
AAGAAAAAGAAGGCAAAAGA+AGG	+	chr4.4:90112282-90112301	MS.gene034147:CDS	30.0%
ACTATCATGTTGGAAAAGAA+TGG	-	chr4.4:90110055-90110074	None:intergenic	30.0%
AGAAACATCAAAAACCTTGA+TGG	+	chr4.4:90108918-90108937	MS.gene034147:intron	30.0%
AGAACATCTAAGTTCATTAG+TGG	-	chr4.4:90110974-90110993	None:intergenic	30.0%
ATAGTAATTGTTAGCTGTGA+GGG	+	chr4.4:90111194-90111213	MS.gene034147:intron	30.0%
ATTTGCAACCAAAAAACAAG+TGG	-	chr4.4:90111754-90111773	None:intergenic	30.0%
CTAAATCCTTGAGAACAAAA+GGG	-	chr4.4:90109537-90109556	None:intergenic	30.0%
GACATATCACTAGTAAATGT+GGG	-	chr4.4:90111398-90111417	None:intergenic	30.0%
GATAATAACTGATATCAGCT+TGG	+	chr4.4:90110852-90110871	MS.gene034147:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	90108617	90112509	90108617	ID=MS.gene034147
chr4.4	mRNA	90108617	90112509	90108617	ID=MS.gene034147.t1;Parent=MS.gene034147
chr4.4	exon	90108617	90108700	90108617	ID=MS.gene034147.t1.exon1;Parent=MS.gene034147.t1
chr4.4	CDS	90108617	90108700	90108617	ID=cds.MS.gene034147.t1;Parent=MS.gene034147.t1
chr4.4	exon	90109550	90109615	90109550	ID=MS.gene034147.t1.exon2;Parent=MS.gene034147.t1
chr4.4	CDS	90109550	90109615	90109550	ID=cds.MS.gene034147.t1;Parent=MS.gene034147.t1
chr4.4	exon	90109701	90109796	90109701	ID=MS.gene034147.t1.exon3;Parent=MS.gene034147.t1
chr4.4	CDS	90109701	90109796	90109701	ID=cds.MS.gene034147.t1;Parent=MS.gene034147.t1
chr4.4	exon	90110121	90110182	90110121	ID=MS.gene034147.t1.exon4;Parent=MS.gene034147.t1
chr4.4	CDS	90110121	90110182	90110121	ID=cds.MS.gene034147.t1;Parent=MS.gene034147.t1
chr4.4	exon	90110273	90110438	90110273	ID=MS.gene034147.t1.exon5;Parent=MS.gene034147.t1
chr4.4	CDS	90110273	90110438	90110273	ID=cds.MS.gene034147.t1;Parent=MS.gene034147.t1
chr4.4	exon	90110559	90110765	90110559	ID=MS.gene034147.t1.exon6;Parent=MS.gene034147.t1
chr4.4	CDS	90110559	90110765	90110559	ID=cds.MS.gene034147.t1;Parent=MS.gene034147.t1
chr4.4	exon	90111940	90112509	90111940	ID=MS.gene034147.t1.exon7;Parent=MS.gene034147.t1
chr4.4	CDS	90111940	90112509	90111940	ID=cds.MS.gene034147.t1;Parent=MS.gene034147.t1

Gene Sequence

>MS.gene034147

ATGGCAAACGGCTGTTCCACTTCCAGTAACAAGTATGAAGCGGCTAGAGAACAAAGACTTGAGGAAAACAAGAAGAGGTTTGAGGTAATTACCACTTTGTTTGAGATAATCTTAATCAATAATTATCATTTGTGTACCTTAATGATGGCTTAAAACTTTGTGAGTTGTGTATATATGCATGTGTATCTAAGGACTTTCATGTTAATTGAAATCAAGGTATTTAAATAGTGGTCGTGTTGCGATCTTTGATATTAAAGAAATAGTTGTCAAATGTGGTTGATGTGGAATCAATCGTGGTTGTAGAAACATCAAAAACCTTGATGGTGTGGCCTAAAATGTTGTTGCGGGTTATTTTTAAAACCAGATTGAGTAGTATGTATAAAAAAAACTTGATAACTTTATTTTTGAGTAGTATATATACTTCTGTAAGAATTCAAAACTTCCGTGTTGGTTTAAGTCATGGTTTTAAATTATGGTCGAGTCGGGATCCTTGATATTGCCAACATAGTTGTCAACTTTGGCTTTCGTGGTCGGTCGCAGAAACGTAAAAAACTTGATGTTGTCGCCTATATTGAGCAGTATATATAGTAAACTTTGCGAGTAGTGTAAATGTCTGTGTAAAATATTCAAGAGTCTCATGTTGCTTTATACTTTATATCATGGCTATAAATTGTGGTCATTAAGCGATCTTTGATATCATGGATTTAGTTGTCAATGTGACTGATGCAACATCAACTTCAACTGTGTTACAAAATCATAAAAAACCTTTGAGGTTGCAGCCACATGTGGATAATAGTTGTGATAATGAGGTTTGAACCTATAGATTTATGCAAACTACCTGTGTCCCTCACCACTAGCGTAGTCTTTGTGTCTTAAATTTTGTTCTGTTTTGATGATTGCTTATTTTACATAATATCCCCTTTTGTTCTCAAGGATTTAGGAATTTCAAAAATTTCCAAAACATTGACTGAAATCGCAAGTCCAGCAAAGAAATCCAAGGTAAACTTACAATTTTTTAAATCGGTTTTACTCTGTAAGGAACTGACATTTGATTTTACTTAGCTCTCCCTATTTCTTTGTGCAGAATCGTCTTCTCATACCAAAATCAAAGAATAATGTTGTTCTGGAACCTAGGTGCTCTTCTCGTGCCAGAAACCCAGTTCCTTCGTATCGTGAAGAGGTAAGCGGTGTTTCCTTGCAAAGTTCAAACTATATCATAATGCAATGAATTACACAAAAAGTGTGACTCTGACTCAAGAAAGAGGAATATGTTGGTTGAACATATAGTGCAAAAATATCTACTAGGAATATGTTGGTTGAACATTTTTTTCCTAAGACAAAAGTATGAGAATTTAGCTCTAGAGTTTTGCAGGCCAGTGTTGTGTGATTTTTCTCTTCCTTCGAGAAATCCTTGATTGTTGAATTTGAAGATTCACCATTCTTTTCCAACATGATAGTTTTGCAGGAATATTTATTTGACTGTATATATTTCACTTTATTACAGTTAGGCACAGACCTTCCACAGTTGCGGAAGAGGTCAAGGTCAAGTTCATCATCATGGGGAAGGTGGTAAACTAACTAATTGCTCATGAGTTATCTTTATTGCTAATTGAAATTGAAATTGAAATTTTATTGACATGGTTATGGGACTCTCAGTTACGCTTACGTTGCGAGGCCACTGAATGAAATCAAAAAAGCTACAGATCAAGAAAGAAAGCGTGCTTTGGATGCTGCAAAGGCACTCCAAATCAATTTGCAGTCTTCGAATCCATCACTTATCAAGTCAATGGTTTGGTCTCACGTTTATAGAGGTTTTTGGTTGGTAGGTTTCAGCTCATAATGTTTAGATTAACCTTGTTGTTCATTCTTTAATGTTTCGATTATTTATAATCAATAAATTTAACATATGTACTTTTTAATATATATTATCTTTATTTTGTAGGGTCTTCCAAGGAGATTTTGCGAGGAACATCTTCCAAAAATTGACTATAAAATGGTTTTAGAGGATGAAAAGGGATTAGAATATGATGTTGTTTACCTTAGCAAGAAAACTGCGCTTAGTGGTGGCTGGAGAGCATTTGCATTGAAACATAAACTGGATGATGGTGATGCAGTAGTTTTTGAATTGGTTGAAGCAGCAAGATTTAAGGTACTTTATGTTGCCAATTCTCATCCAACTCTCTTTTAACTTCAAAGGTTTTTATACTTGCCCGATCAGTCGATAGTGATAGACAGGATAATAACTGATATCAGCTTGGTGAGAATGTTGGTTGATGGTCAAAATAATTAACTTATTTTTGTTATACTTGTCCATGATTTGTTTTTGAGGAAAAGGAATAATTTCAAATGGACTACCACTAATGAACTTAGATGTTCTGAAATTATTTATAACACTCACCTTTGATATTGAGTTTCTTCTTGAGTTCAAGGTTTTTCCTTTTTGCAATATTTTAATATCTATTGAACTTCCACATCAGCTAGAGATATGACCAAATTAATTCTTACAAGGCTTAAGAAATTCCTTACCTCTTGTCTCCTCTGCTAGCTTTTGAGGTTGAGTTAGGCCAAGTTCCAAATATAGTAATTGTTAGCTGTGAGGGGAAACTCTCACACCATGAGATAACTTTTGAAGATAGCTTTTGTGGGTTCAGTTAGACCCTTTTCAAATTCTAAAATGGTATTAGAGTCTATGTCATATGTGTTGCCGATCCACCACTTATCACGCCACCTGCAAAGGCCCCAACCTTCGTACTGAGTGTGAAAGGCGTCTGTAGAGATCCCACATTTACTAGTGATATGTCCAAAATAGTTGTTATAAGTAGGAAATAGTGTTCTTCGTGTGAGCTAGCTTTTGGAGTTTACTTTTAGGGTTGAAATTACGGTCAAGTCAAATTCTAAGTAGTTAGTGCCATTTAAGTTTCTCAAACTAATAAAAAAAAGTAATTATATTTTCCAAATTGCCCCTCAGGGAAACTTGTTCTATAAGAAAGGTTCATTGAAAAATATAAATTTATTGAAGGTTAATTTAGGTATAATAATAGTATTCAACATGAAAGTAGTTAACATTTGTTGATTATATTTGAGTATTTGCTTGCTTTTTTGTGTGCAATGTTCTCTAAAACTGCAGGCCAGACCCACTTGTTTTTTGGTTGCAAATGTTGTCTGTAATGAAATGACACATTATTTATATGCTTGCTTTAATCAAGACATCCAGTAGAAACAAAAAGAATTATATGCCAGGTGGATCGAATGATGATATCGTGTCCTAACATAATTATATTCATATGGAAATAAACAATAATCCTGACAATTCATTCGTGCAGGTTTATATTGTTAGAGCATTTGAAAATATAGATGAAGAGGAAGAAAAAGAAGAAAGCGATGCTTTGGTGGAAGAAGGAAATATGCACACATCCAAAGCAATCAAAGAATCTAAAACTGTGAAACCAAAGGAAGCTACAAAGAAAACTAGAATGCAAAAGGTTTCTAAAGCACCTAAACTTGAGCCAAAGTCCAAAACTGTTAAATCAAAGGAAGCTTATAGGAAAACTAGATCTTCTCAGAACAAAAAGCAAAAAACATCTGAAGTATCTACTGCAGTTGAGCCAAAAGAGGATGCACATCTCGAAACTGTGAAACCAGAGGCAGCTACAAAGTTGCCAAACAAGAAAAAGAAGGCAAAAGAAGGTGATGTATGTGAAATTGGTGACTTACGTAATGCGGAGAAGATTCTTGTTAAAATAATGGAGGCTGACCTAGGCAAGAAGAAAGAACATGTTCAGGATGTTGATGTTGAGCTAAAGATAGTTAAGCTAGATGAGAAAGCAAGCAAATCTGCTGCAGAAAAACCTCGGAAAAAACGAGCTCCGAAGTTTTTCAGAAAGAGAGGTTAA

Protein sequence

>MS.gene034147.t1

MANGCSTSSNKYEAAREQRLEENKKRFEDLGISKISKTLTEIASPAKKSKNRLLIPKSKNNVVLEPRCSSRARNPVPSYREELGTDLPQLRKRSRSSSSSWGSYAYVARPLNEIKKATDQERKRALDAAKALQINLQSSNPSLIKSMVWSHVYRGFWLGLPRRFCEEHLPKIDYKMVLEDEKGLEYDVVYLSKKTALSGGWRAFALKHKLDDGDAVVFELVEAARFKVYIVRAFENIDEEEEKEESDALVEEGNMHTSKAIKESKTVKPKEATKKTRMQKVSKAPKLEPKSKTVKSKEAYRKTRSSQNKKQKTSEVSTAVEPKEDAHLETVKPEAATKLPNKKKKAKEGDVCEIGDLRNAEKILVKIMEADLGKKKEHVQDVDVELKIVKLDEKASKSAAEKPRKKRAPKFFRKRG