Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene034147.t1 | XP_003597798.2 | 73.6 | 420 | 97 | 4 | 1 | 416 | 1 | 410 | 2.20E-138 | 502.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene034147.t1 | Q5KQI4 | 42.7 | 281 | 146 | 8 | 4 | 279 | 6 | 276 | 1.7e-43 | 178.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene034147.t1 | G7IMD4 | 73.6 | 420 | 97 | 4 | 1 | 416 | 1 | 410 | 1.6e-138 | 502.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene034147.t1 | TF | B3 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene034147.t1 | MTR_2g102450 | 79.762 | 420 | 71 | 4 | 1 | 416 | 1 | 410 | 0.0 | 616 |
MS.gene034147.t1 | MTR_2g102450 | 78.006 | 341 | 61 | 4 | 80 | 416 | 26 | 356 | 1.08e-170 | 482 |
MS.gene034147.t1 | MTR_4g008310 | 88.068 | 176 | 20 | 1 | 56 | 230 | 129 | 304 | 8.37e-98 | 295 |
MS.gene034147.t1 | MTR_3g101520 | 40.351 | 228 | 131 | 2 | 9 | 236 | 5 | 227 | 9.34e-46 | 158 |
MS.gene034147.t1 | MTR_3g101520 | 39.912 | 228 | 124 | 1 | 9 | 236 | 5 | 219 | 1.28e-45 | 157 |
MS.gene034147.t1 | MTR_4g101970 | 34.252 | 254 | 110 | 11 | 183 | 396 | 51 | 287 | 1.24e-19 | 90.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene034147.t1 | AT5G58280 | 42.913 | 254 | 115 | 4 | 12 | 238 | 5 | 255 | 2.17e-55 | 186 |
MS.gene034147.t1 | AT5G58280 | 43.529 | 255 | 111 | 5 | 12 | 238 | 5 | 254 | 8.15e-55 | 184 |
MS.gene034147.t1 | AT5G58280 | 42.544 | 228 | 120 | 4 | 12 | 238 | 5 | 222 | 5.96e-49 | 167 |
MS.gene034147.t1 | AT3G19184 | 39.442 | 251 | 127 | 4 | 12 | 254 | 8 | 241 | 6.11e-44 | 154 |
MS.gene034147.t1 | AT3G19184 | 39.442 | 251 | 127 | 4 | 12 | 254 | 8 | 241 | 6.96e-44 | 154 |
MS.gene034147.t1 | AT5G42700 | 39.301 | 229 | 119 | 5 | 10 | 233 | 7 | 220 | 1.66e-41 | 147 |
MS.gene034147.t1 | AT5G42700 | 38.674 | 181 | 98 | 3 | 55 | 233 | 6 | 175 | 5.63e-33 | 122 |
Find 65 sgRNAs with CRISPR-Local
Find 237 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACAACATTATTCTTTGATTT+TGG | 0.151715 | 4.4:-90109716 | None:intergenic |
ATACGAAGGAACTGGGTTTC+TGG | 0.220802 | 4.4:-90109765 | None:intergenic |
GGTTGAAGCAGCAAGATTTA+AGG | 0.234558 | 4.4:+90110744 | MS.gene034147:CDS |
TTCCTTTGATTTAACAGTTT+TGG | 0.240573 | 4.4:-90112130 | None:intergenic |
TCGAGATGTGCATCCTCTTT+TGG | 0.268576 | 4.4:-90112222 | None:intergenic |
TTTAGATTCTTTGATTGCTT+TGG | 0.273612 | 4.4:-90112031 | None:intergenic |
TGCGATTTCAGTCAATGTTT+TGG | 0.279142 | 4.4:-90109572 | None:intergenic |
TTGGACTTTGGCTCAAGTTT+AGG | 0.284818 | 4.4:-90112111 | None:intergenic |
AGCCGCTTCATACTTGTTAC+TGG | 0.292196 | 4.4:-90108639 | None:intergenic |
TTAAATCAAAGGAAGCTTAT+AGG | 0.293006 | 4.4:+90112139 | MS.gene034147:CDS |
TTTACCTTGGATTTCTTTGC+TGG | 0.294171 | 4.4:-90109598 | None:intergenic |
TCGAAGACTGCAAATTGATT+TGG | 0.297643 | 4.4:-90110360 | None:intergenic |
GAAGATTCTTGTTAAAATAA+TGG | 0.308039 | 4.4:+90112341 | MS.gene034147:CDS |
GAAGGTGATGTATGTGAAAT+TGG | 0.313037 | 4.4:+90112300 | MS.gene034147:CDS |
ATCAAAGAATAATGTTGTTC+TGG | 0.322961 | 4.4:+90109721 | MS.gene034147:CDS |
GGCAACTTTGTAGCTGCCTC+TGG | 0.368043 | 4.4:-90112255 | None:intergenic |
CATGTTCTTTCTTCTTGCCT+AGG | 0.381909 | 4.4:-90112371 | None:intergenic |
ATTTGCATTGAAACATAAAC+TGG | 0.400811 | 4.4:+90110693 | MS.gene034147:CDS |
CAAGAAGAAAGAACATGTTC+AGG | 0.404310 | 4.4:+90112377 | MS.gene034147:CDS |
TCTTCACGATACGAAGGAAC+TGG | 0.423062 | 4.4:-90109773 | None:intergenic |
CACTTATCAAGTCAATGGTT+TGG | 0.424323 | 4.4:+90110389 | MS.gene034147:CDS |
TTCATACTTGTTACTGGAAG+TGG | 0.425368 | 4.4:-90108633 | None:intergenic |
TCAAGAAAGAAAGCGTGCTT+TGG | 0.426683 | 4.4:+90110321 | MS.gene034147:CDS |
AAAAGAAGAAAGCGATGCTT+TGG | 0.444588 | 4.4:+90111984 | MS.gene034147:CDS |
ACCTTCCACAGTTGCGGAAG+AGG | 0.453437 | 4.4:+90110131 | MS.gene034147:CDS |
TCCATCACTTATCAAGTCAA+TGG | 0.461188 | 4.4:+90110384 | MS.gene034147:CDS |
GTTTGGTCTCACGTTTATAG+AGG | 0.467915 | 4.4:+90110406 | MS.gene034147:CDS |
CAAGGTCAAGTTCATCATCA+TGG | 0.471764 | 4.4:+90110155 | MS.gene034147:CDS |
ACCTCTTCCGCAACTGTGGA+AGG | 0.475917 | 4.4:-90110132 | None:intergenic |
GGAAAACAAGAAGAGGTTTG+AGG | 0.478514 | 4.4:+90108679 | MS.gene034147:CDS |
AAAGAAAACTAGAATGCAAA+AGG | 0.490045 | 4.4:+90112077 | MS.gene034147:CDS |
AGAAGAAAGCGATGCTTTGG+TGG | 0.493049 | 4.4:+90111987 | MS.gene034147:CDS |
ACCATTGACTTGATAAGTGA+TGG | 0.497922 | 4.4:-90110385 | None:intergenic |
ATTTGAAAATATAGATGAAG+AGG | 0.499410 | 4.4:+90111957 | MS.gene034147:CDS |
AAGGTCAAGTTCATCATCAT+GGG | 0.503820 | 4.4:+90110156 | MS.gene034147:CDS |
TGTTCCTCGCAAAATCTCCT+TGG | 0.505957 | 4.4:-90110565 | None:intergenic |
ATAATGTTGTTCTGGAACCT+AGG | 0.507456 | 4.4:+90109729 | MS.gene034147:CDS |
AGCAAGAAAACTGCGCTTAG+TGG | 0.510768 | 4.4:+90110658 | MS.gene034147:CDS |
AAACTGCGCTTAGTGGTGGC+TGG | 0.513224 | 4.4:+90110665 | MS.gene034147:CDS |
GTCCAAAACTGTTAAATCAA+AGG | 0.523876 | 4.4:+90112128 | MS.gene034147:CDS |
GCGTGCTTTGGATGCTGCAA+AGG | 0.528690 | 4.4:+90110333 | MS.gene034147:CDS |
CACAGTTGCGGAAGAGGTCA+AGG | 0.544125 | 4.4:+90110137 | MS.gene034147:CDS |
AGCGATGCTTTGGTGGAAGA+AGG | 0.546631 | 4.4:+90111994 | MS.gene034147:CDS |
TACTGCAGTTGAGCCAAAAG+AGG | 0.549920 | 4.4:+90112209 | MS.gene034147:CDS |
AAAATAATGGAGGCTGACCT+AGG | 0.559343 | 4.4:+90112354 | MS.gene034147:CDS |
GCACAGACCTTCCACAGTTG+CGG | 0.564774 | 4.4:+90110125 | MS.gene034147:CDS |
CTTGACCTCTTCCGCAACTG+TGG | 0.570829 | 4.4:-90110136 | None:intergenic |
TTGAAACATAAACTGGATGA+TGG | 0.585314 | 4.4:+90110700 | MS.gene034147:CDS |
CTTCACGATACGAAGGAACT+GGG | 0.585948 | 4.4:-90109772 | None:intergenic |
TCAGTTACGCTTACGTTGCG+AGG | 0.594424 | 4.4:+90110269 | MS.gene034147:intron |
GTGTGTAAGCAGATGGCAAA+CGG | 0.598841 | 4.4:+90108605 | None:intergenic |
GACTTGAGGAAAACAAGAAG+AGG | 0.599382 | 4.4:+90108672 | MS.gene034147:CDS |
CAAGTTCATCATCATGGGGA+AGG | 0.599718 | 4.4:+90110161 | MS.gene034147:CDS |
AGTTCCTTCGTATCGTGAAG+AGG | 0.609998 | 4.4:+90109775 | MS.gene034147:CDS |
AAGAAAACTGCGCTTAGTGG+TGG | 0.610549 | 4.4:+90110661 | MS.gene034147:CDS |
TTCCAGTAACAAGTATGAAG+CGG | 0.611515 | 4.4:+90108637 | MS.gene034147:CDS |
ATCTAAAACTGTGAAACCAA+AGG | 0.619114 | 4.4:+90112047 | MS.gene034147:CDS |
GATTCTTGTTAAAATAATGG+AGG | 0.623792 | 4.4:+90112344 | MS.gene034147:CDS |
AAGTCCAGCAAAGAAATCCA+AGG | 0.643226 | 4.4:+90109594 | MS.gene034147:CDS |
CTGGCACGAGAAGAGCACCT+AGG | 0.654582 | 4.4:-90109746 | None:intergenic |
AATTGGTGACTTACGTAATG+CGG | 0.677990 | 4.4:+90112317 | MS.gene034147:CDS |
GGCTAGAGAACAAAGACTTG+AGG | 0.682861 | 4.4:+90108658 | MS.gene034147:CDS |
CTTACCTCTTCACGATACGA+AGG | 0.683573 | 4.4:-90109779 | None:intergenic |
AGGTCAAGTTCATCATCATG+GGG | 0.691621 | 4.4:+90110157 | MS.gene034147:CDS |
TCTCGAAACTGTGAAACCAG+AGG | 0.723018 | 4.4:+90112239 | MS.gene034147:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | GAAAAATATAAATTTATTGA+AGG | + | chr4.4:90111614-90111633 | MS.gene034147:intron | 10.0% |
!!! | AAACTTACAATTTTTTAAAT+CGG | + | chr4.4:90109618-90109637 | MS.gene034147:intron | 10.0% |
!!! | ATATATTATCTTTATTTTGT+AGG | + | chr4.4:90110537-90110556 | MS.gene034147:intron | 10.0% |
!!! | TATATTATCTTTATTTTGTA+GGG | + | chr4.4:90110538-90110557 | MS.gene034147:intron | 10.0% |
!! | AATTTATTGAAGGTTAATTT+AGG | + | chr4.4:90111624-90111643 | MS.gene034147:intron | 15.0% |
!! | CATATGAATATAATTATGTT+AGG | - | chr4.4:90111884-90111903 | None:intergenic | 15.0% |
!! | CTAACATAATTATATTCATA+TGG | + | chr4.4:90111882-90111901 | MS.gene034147:intron | 15.0% |
!! | GATATTAAAATATTGCAAAA+AGG | - | chr4.4:90111055-90111074 | None:intergenic | 15.0% |
!!! | AAATTGAAATTTTATTGACA+TGG | + | chr4.4:90110235-90110254 | MS.gene034147:intron | 15.0% |
!! | AAAAAATTGTAAGTTTACCT+TGG | - | chr4.4:90109614-90109633 | None:intergenic | 20.0% |
!! | AAAATCATAAAAAACCTTTG+AGG | + | chr4.4:90109367-90109386 | MS.gene034147:intron | 20.0% |
!! | ATTTGAAAATATAGATGAAG+AGG | + | chr4.4:90111957-90111976 | MS.gene034147:CDS | 20.0% |
!! | GAAGATTCTTGTTAAAATAA+TGG | + | chr4.4:90112341-90112360 | MS.gene034147:CDS | 20.0% |
!! | TATTTCACTTTATTACAGTT+AGG | + | chr4.4:90110103-90110122 | MS.gene034147:intron | 20.0% |
!! | TCCAAAAATTGACTATAAAA+TGG | + | chr4.4:90110591-90110610 | MS.gene034147:CDS | 20.0% |
!! | TTGCTTTATACTTTATATCA+TGG | + | chr4.4:90109257-90109276 | MS.gene034147:intron | 20.0% |
!! | TTTCATGTTAATTGAAATCA+AGG | + | chr4.4:90108811-90108830 | MS.gene034147:intron | 20.0% |
!!! | AAATCAAGGTATTTAAATAG+TGG | + | chr4.4:90108825-90108844 | MS.gene034147:intron | 20.0% |
!!! | AAATTTTATTGACATGGTTA+TGG | + | chr4.4:90110241-90110260 | MS.gene034147:intron | 20.0% |
!!! | AATTTTATTGACATGGTTAT+GGG | + | chr4.4:90110242-90110261 | MS.gene034147:intron | 20.0% |
!!! | ACAACATTATTCTTTGATTT+TGG | - | chr4.4:90109719-90109738 | None:intergenic | 20.0% |
!!! | ACCATTTTAGAATTTGAAAA+GGG | - | chr4.4:90111276-90111295 | None:intergenic | 20.0% |
!!! | ACCATTTTATAGTCAATTTT+TGG | - | chr4.4:90110595-90110614 | None:intergenic | 20.0% |
!!! | ATAATTCTTTTTGTTTCTAC+TGG | - | chr4.4:90111830-90111849 | None:intergenic | 20.0% |
!!! | ATTAGTTTGAGAAACTTAAA+TGG | - | chr4.4:90111528-90111547 | None:intergenic | 20.0% |
!!! | TAAGTCATGGTTTTAAATTA+TGG | + | chr4.4:90109070-90109089 | MS.gene034147:intron | 20.0% |
!!! | TACCATTTTAGAATTTGAAA+AGG | - | chr4.4:90111277-90111296 | None:intergenic | 20.0% |
! | AAAGAAAACTAGAATGCAAA+AGG | + | chr4.4:90112077-90112096 | MS.gene034147:CDS | 25.0% |
! | AAAGAAATAGTTGTCAAATG+TGG | + | chr4.4:90108870-90108889 | MS.gene034147:intron | 25.0% |
! | AACAAAAAGAATTATATGCC+AGG | + | chr4.4:90111835-90111854 | MS.gene034147:intron | 25.0% |
! | AAGAAGAAACTCAATATCAA+AGG | - | chr4.4:90111017-90111036 | None:intergenic | 25.0% |
! | AATATCTACTAGGAATATGT+TGG | + | chr4.4:90109910-90109929 | MS.gene034147:intron | 25.0% |
! | ACATTAAAGAATGAACAACA+AGG | - | chr4.4:90110472-90110491 | None:intergenic | 25.0% |
! | ATAGTGCAAAAATATCTACT+AGG | + | chr4.4:90109900-90109919 | MS.gene034147:intron | 25.0% |
! | ATCAAAGAATAATGTTGTTC+TGG | + | chr4.4:90109721-90109740 | MS.gene034147:CDS | 25.0% |
! | ATCTTCAAATTCAACAATCA+AGG | - | chr4.4:90110029-90110048 | None:intergenic | 25.0% |
! | ATTTGCATTGAAACATAAAC+TGG | + | chr4.4:90110693-90110712 | MS.gene034147:CDS | 25.0% |
! | CAGCTAACAATTACTATATT+TGG | - | chr4.4:90111191-90111210 | None:intergenic | 25.0% |
! | CCAAAATAGTTGTTATAAGT+AGG | + | chr4.4:90111417-90111436 | MS.gene034147:intron | 25.0% |
! | CTATATATACTGCTCAATAT+AGG | - | chr4.4:90109185-90109204 | None:intergenic | 25.0% |
! | GATTCTTGTTAAAATAATGG+AGG | + | chr4.4:90112344-90112363 | MS.gene034147:CDS | 25.0% |
! | GGAAAAGGAATAATTTCAAA+TGG | + | chr4.4:90110944-90110963 | MS.gene034147:intron | 25.0% |
! | TAAGATTATCTCAAACAAAG+TGG | - | chr4.4:90108711-90108730 | None:intergenic | 25.0% |
! | TATATATGCATGTGTATCTA+AGG | + | chr4.4:90108786-90108805 | MS.gene034147:intron | 25.0% |
! | TATATCATGGCTATAAATTG+TGG | + | chr4.4:90109270-90109289 | MS.gene034147:intron | 25.0% |
! | TATCTTCAAAAGTTATCTCA+TGG | - | chr4.4:90111232-90111251 | None:intergenic | 25.0% |
! | TGACCAAATTAATTCTTACA+AGG | + | chr4.4:90111103-90111122 | MS.gene034147:intron | 25.0% |
! | TTAAATCAAAGGAAGCTTAT+AGG | + | chr4.4:90112139-90112158 | MS.gene034147:CDS | 25.0% |
! | TTTAGATTCTTTGATTGCTT+TGG | - | chr4.4:90112034-90112053 | None:intergenic | 25.0% |
! | TTTATACATACTACTCAATC+TGG | - | chr4.4:90108980-90108999 | None:intergenic | 25.0% |
!! | AAGCCTTGTAAGAATTAATT+TGG | - | chr4.4:90111109-90111128 | None:intergenic | 25.0% |
!! | AATTCTCATACTTTTGTCTT+AGG | - | chr4.4:90109950-90109969 | None:intergenic | 25.0% |
!! | CAATTACTATATTTGGAACT+TGG | - | chr4.4:90111184-90111203 | None:intergenic | 25.0% |
!! | CCTACTTATAACAACTATTT+TGG | - | chr4.4:90111420-90111439 | None:intergenic | 25.0% |
!! | TTTTCCTCAAAAACAAATCA+TGG | - | chr4.4:90110930-90110949 | None:intergenic | 25.0% |
!!! | AAAGTTTTAAGCCATCATTA+AGG | - | chr4.4:90108756-90108775 | None:intergenic | 25.0% |
!!! | ACCCTTTTCAAATTCTAAAA+TGG | + | chr4.4:90111272-90111291 | MS.gene034147:intron | 25.0% |
!!! | ATGATTTGTTTTTGAGGAAA+AGG | + | chr4.4:90110929-90110948 | MS.gene034147:intron | 25.0% |
!!! | TACTTTTAGGGTTGAAATTA+CGG | + | chr4.4:90111476-90111495 | MS.gene034147:intron | 25.0% |
!!! | TGACTATAAAATGGTTTTAG+AGG | + | chr4.4:90110600-90110619 | MS.gene034147:CDS | 25.0% |
!!! | TTCCTTTGATTTAACAGTTT+TGG | - | chr4.4:90112133-90112152 | None:intergenic | 25.0% |
AAAAAGAATTATATGCCAGG+TGG | + | chr4.4:90111838-90111857 | MS.gene034147:intron | 30.0% | |
AAGAAAAAGAAGGCAAAAGA+AGG | + | chr4.4:90112282-90112301 | MS.gene034147:CDS | 30.0% | |
ACTATCATGTTGGAAAAGAA+TGG | - | chr4.4:90110055-90110074 | None:intergenic | 30.0% | |
AGAAACATCAAAAACCTTGA+TGG | + | chr4.4:90108918-90108937 | MS.gene034147:intron | 30.0% | |
AGAACATCTAAGTTCATTAG+TGG | - | chr4.4:90110974-90110993 | None:intergenic | 30.0% | |
ATAGTAATTGTTAGCTGTGA+GGG | + | chr4.4:90111194-90111213 | MS.gene034147:intron | 30.0% | |
ATTTGCAACCAAAAAACAAG+TGG | - | chr4.4:90111754-90111773 | None:intergenic | 30.0% | |
CTAAATCCTTGAGAACAAAA+GGG | - | chr4.4:90109537-90109556 | None:intergenic | 30.0% | |
GACATATCACTAGTAAATGT+GGG | - | chr4.4:90111398-90111417 | None:intergenic | 30.0% | |
GATAATAACTGATATCAGCT+TGG | + | chr4.4:90110852-90110871 | MS.gene034147:intron | 30.0% | |
GATATAGTTTGAACTTTGCA+AGG | - | chr4.4:90109813-90109832 | None:intergenic | 30.0% | |
GTCCAAAACTGTTAAATCAA+AGG | + | chr4.4:90112128-90112147 | MS.gene034147:CDS | 30.0% | |
TAAATCCTTGAGAACAAAAG+GGG | - | chr4.4:90109536-90109555 | None:intergenic | 30.0% | |
TATAGTAATTGTTAGCTGTG+AGG | + | chr4.4:90111193-90111212 | MS.gene034147:intron | 30.0% | |
TCATTTGTGTACCTTAATGA+TGG | + | chr4.4:90108742-90108761 | MS.gene034147:intron | 30.0% | |
TTAAGCGATCTTTGATATCA+TGG | + | chr4.4:90109296-90109315 | MS.gene034147:intron | 30.0% | |
TTGAAACATAAACTGGATGA+TGG | + | chr4.4:90110700-90110719 | MS.gene034147:CDS | 30.0% | |
TTTGCAACCAAAAAACAAGT+GGG | - | chr4.4:90111753-90111772 | None:intergenic | 30.0% | |
! | ATCTAAAACTGTGAAACCAA+AGG | + | chr4.4:90112047-90112066 | MS.gene034147:CDS | 30.0% |
! | GGAAACTTGTTCTATAAGAA+AGG | + | chr4.4:90111585-90111604 | MS.gene034147:intron | 30.0% |
! | GGATAATAGTTGTGATAATG+AGG | + | chr4.4:90109404-90109423 | MS.gene034147:intron | 30.0% |
! | GGTAGTTTGCATAAATCTAT+AGG | - | chr4.4:90109436-90109455 | None:intergenic | 30.0% |
! | TGATGCAGTAGTTTTTGAAT+TGG | + | chr4.4:90110723-90110742 | MS.gene034147:CDS | 30.0% |
! | TTTGCCTTCTTTTTCTTGTT+TGG | - | chr4.4:90112279-90112298 | None:intergenic | 30.0% |
! | TTTTAAATTATGGTCGAGTC+GGG | + | chr4.4:90109080-90109099 | MS.gene034147:intron | 30.0% |
!! | ACTTTTGAAGATAGCTTTTG+TGG | + | chr4.4:90111239-90111258 | MS.gene034147:intron | 30.0% |
!! | CTTTGAAGTTAAAAGAGAGT+TGG | - | chr4.4:90110793-90110812 | None:intergenic | 30.0% |
!! | CTTTTGAAGATAGCTTTTGT+GGG | + | chr4.4:90111240-90111259 | MS.gene034147:intron | 30.0% |
!! | GTTTTAAATTATGGTCGAGT+CGG | + | chr4.4:90109079-90109098 | MS.gene034147:intron | 30.0% |
!! | TAAATCGGTTTTACTCTGTA+AGG | + | chr4.4:90109633-90109652 | MS.gene034147:intron | 30.0% |
!!! | AATGGTTTTAGAGGATGAAA+AGG | + | chr4.4:90110609-90110628 | MS.gene034147:CDS | 30.0% |
!!! | AGCTTTTGGAGTTTACTTTT+AGG | + | chr4.4:90111463-90111482 | MS.gene034147:intron | 30.0% |
!!! | ATGGTTTTAGAGGATGAAAA+GGG | + | chr4.4:90110610-90110629 | MS.gene034147:CDS | 30.0% |
!!! | CAACTCTCTTTTAACTTCAA+AGG | + | chr4.4:90110791-90110810 | MS.gene034147:intron | 30.0% |
!!! | GATTTAACAGTTTTGGACTT+TGG | - | chr4.4:90112126-90112145 | None:intergenic | 30.0% |
!!! | GCTTTTGGAGTTTACTTTTA+GGG | + | chr4.4:90111464-90111483 | MS.gene034147:intron | 30.0% |
!!! | GCTTTTTTGATTTCATTCAG+TGG | - | chr4.4:90110295-90110314 | None:intergenic | 30.0% |
!!! | TTGTCCATGATTTGTTTTTG+AGG | + | chr4.4:90110923-90110942 | MS.gene034147:intron | 30.0% |
AAAAGAAGAAAGCGATGCTT+TGG | + | chr4.4:90111984-90112003 | MS.gene034147:CDS | 35.0% | |
AAAGAGAGTTGGATGAGAAT+TGG | - | chr4.4:90110782-90110801 | None:intergenic | 35.0% | |
AACAATCAAGGATTTCTCGA+AGG | - | chr4.4:90110017-90110036 | None:intergenic | 35.0% | |
AACCATGACTTAAACCAACA+CGG | - | chr4.4:90109062-90109081 | None:intergenic | 35.0% | |
AAGGTCAAGTTCATCATCAT+GGG | + | chr4.4:90110156-90110175 | MS.gene034147:CDS | 35.0% | |
ACGATTCTGCACAAAGAAAT+AGG | - | chr4.4:90109687-90109706 | None:intergenic | 35.0% | |
AGAATTCAAAACTTCCGTGT+TGG | + | chr4.4:90109045-90109064 | MS.gene034147:intron | 35.0% | |
AGAGAAAAATCACACAACAC+TGG | - | chr4.4:90109993-90110012 | None:intergenic | 35.0% | |
CAACTATGTTGGCAATATCA+AGG | - | chr4.4:90109108-90109127 | None:intergenic | 35.0% | |
CAAGAAGAAAGAACATGTTC+AGG | + | chr4.4:90112377-90112396 | MS.gene034147:CDS | 35.0% | |
CACTTATCAAGTCAATGGTT+TGG | + | chr4.4:90110389-90110408 | MS.gene034147:CDS | 35.0% | |
CCTAAATCCTTGAGAACAAA+AGG | - | chr4.4:90109538-90109557 | None:intergenic | 35.0% | |
CGATTCTGCACAAAGAAATA+GGG | - | chr4.4:90109686-90109705 | None:intergenic | 35.0% | |
CTCAAGAAAGAGGAATATGT+TGG | + | chr4.4:90109869-90109888 | MS.gene034147:intron | 35.0% | |
GAAGGTGATGTATGTGAAAT+TGG | + | chr4.4:90112300-90112319 | MS.gene034147:CDS | 35.0% | |
GGACATATCACTAGTAAATG+TGG | - | chr4.4:90111399-90111418 | None:intergenic | 35.0% | |
GTTGCCAAACAAGAAAAAGA+AGG | + | chr4.4:90112272-90112291 | MS.gene034147:CDS | 35.0% | |
TAGTAATTGTTAGCTGTGAG+GGG | + | chr4.4:90111195-90111214 | MS.gene034147:intron | 35.0% | |
TATAGAACAAGTTTCCCTGA+GGG | - | chr4.4:90111581-90111600 | None:intergenic | 35.0% | |
TCACAACTATTATCCACATG+TGG | - | chr4.4:90109399-90109418 | None:intergenic | 35.0% | |
TCCATCACTTATCAAGTCAA+TGG | + | chr4.4:90110384-90110403 | MS.gene034147:CDS | 35.0% | |
TCGAAGACTGCAAATTGATT+TGG | - | chr4.4:90110363-90110382 | None:intergenic | 35.0% | |
TGAGTTTCTTCTTGAGTTCA+AGG | + | chr4.4:90111024-90111043 | MS.gene034147:intron | 35.0% | |
TTATAGAACAAGTTTCCCTG+AGG | - | chr4.4:90111582-90111601 | None:intergenic | 35.0% | |
TTCCAGTAACAAGTATGAAG+CGG | + | chr4.4:90108637-90108656 | MS.gene034147:CDS | 35.0% | |
TTCCTGCAAAACTATCATGT+TGG | - | chr4.4:90110065-90110084 | None:intergenic | 35.0% | |
TTTACCTTGGATTTCTTTGC+TGG | - | chr4.4:90109601-90109620 | None:intergenic | 35.0% | |
! | AATATCCCCTTTTGTTCTCA+AGG | + | chr4.4:90109528-90109547 | MS.gene034147:intron | 35.0% |
! | AATTGGTGACTTACGTAATG+CGG | + | chr4.4:90112317-90112336 | MS.gene034147:CDS | 35.0% |
! | ATAACCCGCAACAACATTTT+AGG | - | chr4.4:90108949-90108968 | None:intergenic | 35.0% |
! | CCTCTCTTTCTGAAAAACTT+CGG | - | chr4.4:90112486-90112505 | None:intergenic | 35.0% |
! | CCTTTTGTTCTCAAGGATTT+AGG | + | chr4.4:90109535-90109554 | MS.gene034147:intron | 35.0% |
! | CTCACGTTTATAGAGGTTTT+TGG | + | chr4.4:90110413-90110432 | MS.gene034147:CDS | 35.0% |
! | GTTTTCTTTGTAGCTTCCTT+TGG | - | chr4.4:90112066-90112085 | None:intergenic | 35.0% |
! | TGCGATTTCAGTCAATGTTT+TGG | - | chr4.4:90109575-90109594 | None:intergenic | 35.0% |
! | TTCATACTTGTTACTGGAAG+TGG | - | chr4.4:90108636-90108655 | None:intergenic | 35.0% |
!! | ACCATTGACTTGATAAGTGA+TGG | - | chr4.4:90110388-90110407 | None:intergenic | 35.0% |
!! | ATAATGTTGTTCTGGAACCT+AGG | + | chr4.4:90109729-90109748 | MS.gene034147:CDS | 35.0% |
!! | TTATTTTGTAGGGTCTTCCA+AGG | + | chr4.4:90110548-90110567 | MS.gene034147:intron | 35.0% |
!! | TTCCAACATGATAGTTTTGC+AGG | + | chr4.4:90110060-90110079 | MS.gene034147:intron | 35.0% |
!!! | ATTTAGCTCTAGAGTTTTGC+AGG | + | chr4.4:90109967-90109986 | MS.gene034147:intron | 35.0% |
!!! | CGTTTATAGAGGTTTTTGGT+TGG | + | chr4.4:90110417-90110436 | MS.gene034147:CDS | 35.0% |
!!! | TATAGAGGTTTTTGGTTGGT+AGG | + | chr4.4:90110421-90110440 | MS.gene034147:intron | 35.0% |
AACCAAAAAACAAGTGGGTC+TGG | - | chr4.4:90111748-90111767 | None:intergenic | 40.0% | |
AAGTCCAGCAAAGAAATCCA+AGG | + | chr4.4:90109594-90109613 | MS.gene034147:CDS | 40.0% | |
AATCTGCTGCAGAAAAACCT+CGG | + | chr4.4:90112448-90112467 | MS.gene034147:CDS | 40.0% | |
AGGTCAAGTTCATCATCATG+GGG | + | chr4.4:90110157-90110176 | MS.gene034147:CDS | 40.0% | |
ATAGAACAAGTTTCCCTGAG+GGG | - | chr4.4:90111580-90111599 | None:intergenic | 40.0% | |
ATATCATCATTCGATCCACC+TGG | - | chr4.4:90111856-90111875 | None:intergenic | 40.0% | |
ATCAGTCGATAGTGATAGAC+AGG | + | chr4.4:90110830-90110849 | MS.gene034147:intron | 40.0% | |
CAAGGTCAAGTTCATCATCA+TGG | + | chr4.4:90110155-90110174 | MS.gene034147:CDS | 40.0% | |
CATGTTCTTTCTTCTTGCCT+AGG | - | chr4.4:90112374-90112393 | None:intergenic | 40.0% | |
GACTTGAGGAAAACAAGAAG+AGG | + | chr4.4:90108672-90108691 | MS.gene034147:CDS | 40.0% | |
GCCAAAGTTGACAACTATGT+TGG | - | chr4.4:90109119-90109138 | None:intergenic | 40.0% | |
GCCAACATAGTTGTCAACTT+TGG | + | chr4.4:90109115-90109134 | MS.gene034147:intron | 40.0% | |
GGAAAACAAGAAGAGGTTTG+AGG | + | chr4.4:90108679-90108698 | MS.gene034147:CDS | 40.0% | |
GGTTGAAGCAGCAAGATTTA+AGG | + | chr4.4:90110744-90110763 | MS.gene034147:CDS | 40.0% | |
GTTTGGTCTCACGTTTATAG+AGG | + | chr4.4:90110406-90110425 | MS.gene034147:CDS | 40.0% | |
TGTGGCCTAAAATGTTGTTG+CGG | + | chr4.4:90108941-90108960 | MS.gene034147:intron | 40.0% | |
! | AAAATAATGGAGGCTGACCT+AGG | + | chr4.4:90112354-90112373 | MS.gene034147:CDS | 40.0% |
! | ATTTTCCAAATTGCCCCTCA+GGG | + | chr4.4:90111564-90111583 | MS.gene034147:intron | 40.0% |
! | GTCTATCACTATCGACTGAT+CGG | - | chr4.4:90110830-90110849 | None:intergenic | 40.0% |
! | GTTGTCAAATGTGGTTGATG+TGG | + | chr4.4:90108879-90108898 | MS.gene034147:intron | 40.0% |
! | TAAGCGCAGTTTTCTTGCTA+AGG | - | chr4.4:90110657-90110676 | None:intergenic | 40.0% |
! | TATCAGCTTGGTGAGAATGT+TGG | + | chr4.4:90110864-90110883 | MS.gene034147:intron | 40.0% |
! | TATTTTCCAAATTGCCCCTC+AGG | + | chr4.4:90111563-90111582 | MS.gene034147:intron | 40.0% |
! | TCAAGAAAGAAAGCGTGCTT+TGG | + | chr4.4:90110321-90110340 | MS.gene034147:CDS | 40.0% |
! | TCTATCACTATCGACTGATC+GGG | - | chr4.4:90110829-90110848 | None:intergenic | 40.0% |
! | TTGGACTTTGGCTCAAGTTT+AGG | - | chr4.4:90112114-90112133 | None:intergenic | 40.0% |
! | TTGGTGAGAATGTTGGTTGA+TGG | + | chr4.4:90110871-90110890 | MS.gene034147:intron | 40.0% |
!! | CATCAAAAACCTTGATGGTG+TGG | + | chr4.4:90108923-90108942 | MS.gene034147:intron | 40.0% |
!! | CCGAAGTTTTTCAGAAAGAG+AGG | + | chr4.4:90112483-90112502 | MS.gene034147:CDS | 40.0% |
!! | GCAATGTTCTCTAAAACTGC+AGG | + | chr4.4:90111722-90111741 | MS.gene034147:intron | 40.0% |
!! | TTCCGTGTTGGTTTAAGTCA+TGG | + | chr4.4:90109057-90109076 | MS.gene034147:intron | 40.0% |
!!! | CTAGCTTTTGAGGTTGAGTT+AGG | + | chr4.4:90111158-90111177 | MS.gene034147:intron | 40.0% |
AAAGACTACGCTAGTGGTGA+GGG | - | chr4.4:90109464-90109483 | None:intergenic | 45.0% | |
AAGAAAACTGCGCTTAGTGG+TGG | + | chr4.4:90110661-90110680 | MS.gene034147:CDS | 45.0% | |
ACCTGCACGAATGAATTGTC+AGG | - | chr4.4:90111922-90111941 | None:intergenic | 45.0% | |
ACCTTCGTACTGAGTGTGAA+AGG | + | chr4.4:90111359-90111378 | MS.gene034147:intron | 45.0% | |
AGAAGAAAGCGATGCTTTGG+TGG | + | chr4.4:90111987-90112006 | MS.gene034147:CDS | 45.0% | |
AGACACAAAGACTACGCTAG+TGG | - | chr4.4:90109470-90109489 | None:intergenic | 45.0% | |
AGCAAGAAAACTGCGCTTAG+TGG | + | chr4.4:90110658-90110677 | MS.gene034147:CDS | 45.0% | |
AGTTCCTTCGTATCGTGAAG+AGG | + | chr4.4:90109775-90109794 | MS.gene034147:CDS | 45.0% | |
ATACGAAGGAACTGGGTTTC+TGG | - | chr4.4:90109768-90109787 | None:intergenic | 45.0% | |
CAAGTTCATCATCATGGGGA+AGG | + | chr4.4:90110161-90110180 | MS.gene034147:CDS | 45.0% | |
CTTACCTCTTCACGATACGA+AGG | - | chr4.4:90109782-90109801 | None:intergenic | 45.0% | |
CTTCACGATACGAAGGAACT+GGG | - | chr4.4:90109775-90109794 | None:intergenic | 45.0% | |
GGCTAGAGAACAAAGACTTG+AGG | + | chr4.4:90108658-90108677 | MS.gene034147:CDS | 45.0% | |
GGTCATATCTCTAGCTGATG+TGG | - | chr4.4:90111088-90111107 | None:intergenic | 45.0% | |
GTGACTCTGACTCAAGAAAG+AGG | + | chr4.4:90109859-90109878 | MS.gene034147:intron | 45.0% | |
GTGGCCTAAAATGTTGTTGC+GGG | + | chr4.4:90108942-90108961 | MS.gene034147:intron | 45.0% | |
TACTGCAGTTGAGCCAAAAG+AGG | + | chr4.4:90112209-90112228 | MS.gene034147:CDS | 45.0% | |
TCAACCTCAAAAGCTAGCAG+AGG | - | chr4.4:90111155-90111174 | None:intergenic | 45.0% | |
TCACACTCAGTACGAAGGTT+GGG | - | chr4.4:90111358-90111377 | None:intergenic | 45.0% | |
TCCTGACAATTCATTCGTGC+AGG | + | chr4.4:90111918-90111937 | MS.gene034147:intron | 45.0% | |
TCGTATCGTGAAGAGGTAAG+CGG | + | chr4.4:90109782-90109801 | MS.gene034147:intron | 45.0% | |
TCTCGAAACTGTGAAACCAG+AGG | + | chr4.4:90112239-90112258 | MS.gene034147:CDS | 45.0% | |
TCTTCACGATACGAAGGAAC+TGG | - | chr4.4:90109776-90109795 | None:intergenic | 45.0% | |
TGTTCCTCGCAAAATCTCCT+TGG | - | chr4.4:90110568-90110587 | None:intergenic | 45.0% | |
TTCACACTCAGTACGAAGGT+TGG | - | chr4.4:90111359-90111378 | None:intergenic | 45.0% | |
! | AGCCGCTTCATACTTGTTAC+TGG | - | chr4.4:90108642-90108661 | None:intergenic | 45.0% |
! | CATTTTAGGCCACACCATCA+AGG | - | chr4.4:90108935-90108954 | None:intergenic | 45.0% |
! | GGTTGATGTGGAATCAATCG+TGG | + | chr4.4:90108891-90108910 | MS.gene034147:intron | 45.0% |
! | TCGAGATGTGCATCCTCTTT+TGG | - | chr4.4:90112225-90112244 | None:intergenic | 45.0% |
! | TCTTCCAAGGAGATTTTGCG+AGG | + | chr4.4:90110561-90110580 | MS.gene034147:CDS | 45.0% |
!! | GTTGTCAACTTTGGCTTTCG+TGG | + | chr4.4:90109124-90109143 | MS.gene034147:intron | 45.0% |
!! | TCAACTTTGGCTTTCGTGGT+CGG | + | chr4.4:90109128-90109147 | MS.gene034147:intron | 45.0% |
!!! | TCTTCGTGTGAGCTAGCTTT+TGG | + | chr4.4:90111449-90111468 | MS.gene034147:intron | 45.0% |
AAGCTAGCAGAGGAGACAAG+AGG | - | chr4.4:90111145-90111164 | None:intergenic | 50.0% | |
ACATGTGGCTGCAACCTCAA+AGG | - | chr4.4:90109384-90109403 | None:intergenic | 50.0% | |
ACTTATCACGCCACCTGCAA+AGG | + | chr4.4:90111331-90111350 | MS.gene034147:intron | 50.0% | |
AGCAGAGGAGACAAGAGGTA+AGG | - | chr4.4:90111140-90111159 | None:intergenic | 50.0% | |
AGCGATGCTTTGGTGGAAGA+AGG | + | chr4.4:90111994-90112013 | MS.gene034147:CDS | 50.0% | |
AGTTTCCCTGAGGGGCAATT+TGG | - | chr4.4:90111572-90111591 | None:intergenic | 50.0% | |
CAAAGACTACGCTAGTGGTG+AGG | - | chr4.4:90109465-90109484 | None:intergenic | 50.0% | |
CACACTCAGTACGAAGGTTG+GGG | - | chr4.4:90111357-90111376 | None:intergenic | 50.0% | |
GCCTTTCACACTCAGTACGA+AGG | - | chr4.4:90111363-90111382 | None:intergenic | 50.0% | |
GTTCATCATCATGGGGAAGG+TGG | + | chr4.4:90110164-90110183 | MS.gene034147:intron | 50.0% | |
TCAGTTACGCTTACGTTGCG+AGG | + | chr4.4:90110269-90110288 | MS.gene034147:intron | 50.0% | |
TTTGCAGGTGGCGTGATAAG+TGG | - | chr4.4:90111332-90111351 | None:intergenic | 50.0% | |
! | TTTGAGGTTGCAGCCACATG+TGG | + | chr4.4:90109383-90109402 | MS.gene034147:intron | 50.0% |
!! | TGGCGTGATAAGTGGTGGAT+CGG | - | chr4.4:90111324-90111343 | None:intergenic | 50.0% |
!!! | GGCCAGACCCACTTGTTTTT+TGG | + | chr4.4:90111743-90111762 | MS.gene034147:intron | 50.0% |
!!! | GTCTCCTCTGCTAGCTTTTG+AGG | + | chr4.4:90111148-90111167 | MS.gene034147:intron | 50.0% |
!!! | TTCGGAGCTCGTTTTTTCCG+AGG | - | chr4.4:90112468-90112487 | None:intergenic | 50.0% |
AAACTGCGCTTAGTGGTGGC+TGG | + | chr4.4:90110665-90110684 | MS.gene034147:CDS | 55.0% | |
ACCTCTTCCGCAACTGTGGA+AGG | - | chr4.4:90110135-90110154 | None:intergenic | 55.0% | |
ACCTTCCACAGTTGCGGAAG+AGG | + | chr4.4:90110131-90110150 | MS.gene034147:CDS | 55.0% | |
CACAGTTGCGGAAGAGGTCA+AGG | + | chr4.4:90110137-90110156 | MS.gene034147:CDS | 55.0% | |
CTTGACCTCTTCCGCAACTG+TGG | - | chr4.4:90110139-90110158 | None:intergenic | 55.0% | |
GCACAGACCTTCCACAGTTG+CGG | + | chr4.4:90110125-90110144 | MS.gene034147:CDS | 55.0% | |
GGCAACTTTGTAGCTGCCTC+TGG | - | chr4.4:90112258-90112277 | None:intergenic | 55.0% | |
! | GCGTGCTTTGGATGCTGCAA+AGG | + | chr4.4:90110333-90110352 | MS.gene034147:CDS | 55.0% |
AAGGTTGGGGCCTTTGCAGG+TGG | - | chr4.4:90111344-90111363 | None:intergenic | 60.0% | |
ACGAAGGTTGGGGCCTTTGC+AGG | - | chr4.4:90111347-90111366 | None:intergenic | 60.0% | |
ACGCTAGTGGTGAGGGACAC+AGG | - | chr4.4:90109457-90109476 | None:intergenic | 60.0% | |
GCAGGTGGCGTGATAAGTGG+TGG | - | chr4.4:90111329-90111348 | None:intergenic | 60.0% | |
!! | CTGGCACGAGAAGAGCACCT+AGG | - | chr4.4:90109749-90109768 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.4 | gene | 90108617 | 90112509 | 90108617 | ID=MS.gene034147 |
chr4.4 | mRNA | 90108617 | 90112509 | 90108617 | ID=MS.gene034147.t1;Parent=MS.gene034147 |
chr4.4 | exon | 90108617 | 90108700 | 90108617 | ID=MS.gene034147.t1.exon1;Parent=MS.gene034147.t1 |
chr4.4 | CDS | 90108617 | 90108700 | 90108617 | ID=cds.MS.gene034147.t1;Parent=MS.gene034147.t1 |
chr4.4 | exon | 90109550 | 90109615 | 90109550 | ID=MS.gene034147.t1.exon2;Parent=MS.gene034147.t1 |
chr4.4 | CDS | 90109550 | 90109615 | 90109550 | ID=cds.MS.gene034147.t1;Parent=MS.gene034147.t1 |
chr4.4 | exon | 90109701 | 90109796 | 90109701 | ID=MS.gene034147.t1.exon3;Parent=MS.gene034147.t1 |
chr4.4 | CDS | 90109701 | 90109796 | 90109701 | ID=cds.MS.gene034147.t1;Parent=MS.gene034147.t1 |
chr4.4 | exon | 90110121 | 90110182 | 90110121 | ID=MS.gene034147.t1.exon4;Parent=MS.gene034147.t1 |
chr4.4 | CDS | 90110121 | 90110182 | 90110121 | ID=cds.MS.gene034147.t1;Parent=MS.gene034147.t1 |
chr4.4 | exon | 90110273 | 90110438 | 90110273 | ID=MS.gene034147.t1.exon5;Parent=MS.gene034147.t1 |
chr4.4 | CDS | 90110273 | 90110438 | 90110273 | ID=cds.MS.gene034147.t1;Parent=MS.gene034147.t1 |
chr4.4 | exon | 90110559 | 90110765 | 90110559 | ID=MS.gene034147.t1.exon6;Parent=MS.gene034147.t1 |
chr4.4 | CDS | 90110559 | 90110765 | 90110559 | ID=cds.MS.gene034147.t1;Parent=MS.gene034147.t1 |
chr4.4 | exon | 90111940 | 90112509 | 90111940 | ID=MS.gene034147.t1.exon7;Parent=MS.gene034147.t1 |
chr4.4 | CDS | 90111940 | 90112509 | 90111940 | ID=cds.MS.gene034147.t1;Parent=MS.gene034147.t1 |
Gene Sequence |
Protein sequence |