Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034161.t1 | XP_020237768.1 | 80.6 | 299 | 53 | 2 | 1 | 294 | 1 | 299 | 3.80E-129 | 471.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034161.t1 | Q8H1G0 | 61.6 | 292 | 108 | 3 | 1 | 289 | 1 | 291 | 9.3e-92 | 338.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034161.t1 | A0A151RPA5 | 80.6 | 299 | 53 | 2 | 1 | 294 | 1 | 299 | 2.8e-129 | 471.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene034161.t1 | TF | C2C2-GATA |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034161.t1 | MTR_3g100050 | 57.534 | 219 | 71 | 5 | 54 | 262 | 35 | 241 | 3.38e-70 | 219 |
| MS.gene034161.t1 | MTR_5g066510 | 47.857 | 280 | 85 | 9 | 15 | 271 | 34 | 275 | 6.01e-67 | 211 |
| MS.gene034161.t1 | MTR_3g100040 | 54.696 | 181 | 77 | 1 | 83 | 263 | 69 | 244 | 3.56e-62 | 201 |
| MS.gene034161.t1 | MTR_4g093730 | 51.741 | 201 | 81 | 4 | 81 | 275 | 41 | 231 | 3.73e-59 | 192 |
| MS.gene034161.t1 | MTR_3g100040 | 53.793 | 145 | 62 | 1 | 119 | 263 | 1 | 140 | 7.71e-47 | 158 |
| MS.gene034161.t1 | MTR_4g008070 | 87.342 | 79 | 10 | 0 | 177 | 255 | 1 | 79 | 7.15e-46 | 150 |
| MS.gene034161.t1 | MTR_4g008090 | 89.873 | 79 | 7 | 1 | 102 | 179 | 12 | 90 | 7.46e-43 | 143 |
| MS.gene034161.t1 | MTR_5g066510 | 46.535 | 202 | 72 | 7 | 15 | 215 | 34 | 200 | 1.96e-38 | 134 |
| MS.gene034161.t1 | MTR_3g060200 | 40.000 | 95 | 51 | 2 | 169 | 263 | 4 | 92 | 1.29e-14 | 73.2 |
| MS.gene034161.t1 | MTR_3g060200 | 40.000 | 95 | 51 | 2 | 169 | 263 | 4 | 92 | 1.70e-14 | 73.9 |
| MS.gene034161.t1 | MTR_3g060200 | 40.000 | 95 | 51 | 2 | 169 | 263 | 4 | 92 | 1.72e-14 | 73.6 |
| MS.gene034161.t1 | MTR_3g060200 | 40.000 | 95 | 51 | 2 | 169 | 263 | 4 | 92 | 1.93e-14 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034161.t1 | AT1G51600 | 61.149 | 296 | 111 | 3 | 1 | 293 | 1 | 295 | 7.34e-127 | 363 |
| MS.gene034161.t1 | AT1G51600 | 61.149 | 296 | 111 | 3 | 1 | 293 | 1 | 295 | 7.34e-127 | 363 |
| MS.gene034161.t1 | AT3G21175 | 61.379 | 290 | 105 | 3 | 1 | 288 | 1 | 285 | 6.60e-120 | 346 |
| MS.gene034161.t1 | AT3G21175 | 60.959 | 292 | 105 | 4 | 1 | 288 | 1 | 287 | 5.78e-118 | 341 |
| MS.gene034161.t1 | AT3G21175 | 58.182 | 220 | 88 | 1 | 1 | 220 | 1 | 216 | 5.62e-82 | 246 |
| MS.gene034161.t1 | AT4G24470 | 51.269 | 197 | 87 | 3 | 68 | 263 | 68 | 256 | 2.08e-61 | 197 |
| MS.gene034161.t1 | AT4G24470 | 51.269 | 197 | 87 | 3 | 68 | 263 | 68 | 256 | 2.08e-61 | 197 |
| MS.gene034161.t1 | AT4G24470 | 51.269 | 197 | 87 | 3 | 68 | 263 | 68 | 256 | 2.52e-61 | 197 |
Find 78 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAACCTCATTCTTGTTTAA+TGG | 0.137752 | 4.3:-87452987 | None:intergenic |
| TCAATCTGTACTACTGTTAT+TGG | 0.235229 | 4.3:+87451469 | MS.gene034161:CDS |
| TGGACTTATGTGGGCAAATA+AGG | 0.243603 | 4.3:+87452583 | MS.gene034161:CDS |
| TGGACTTGGCAGATGTAAAT+TGG | 0.265787 | 4.3:-87452230 | None:intergenic |
| CAGAGGGTTCTTGGCCCTTC+AGG | 0.272302 | 4.3:-87452551 | None:intergenic |
| CAAGCATTGCAGAGGGTTCT+TGG | 0.288221 | 4.3:-87452560 | None:intergenic |
| TCTCATTTCCATTGCTCATA+TGG | 0.307609 | 4.3:-87450606 | None:intergenic |
| TTTAGGATGCAAAGAAATAA+AGG | 0.321682 | 4.3:+87452207 | MS.gene034161:intron |
| TGACAGTCACACTTTAATAA+TGG | 0.327842 | 4.3:+87450717 | MS.gene034161:CDS |
| ATGGATCAAGGGAATGATAT+TGG | 0.357672 | 4.3:+87450736 | MS.gene034161:CDS |
| CAATCTGTACTACTGTTATT+GGG | 0.360369 | 4.3:+87451470 | MS.gene034161:CDS |
| TCAGGTCCACGCCGCATCAT+TGG | 0.388420 | 4.3:-87452533 | None:intergenic |
| CGACTCCGTGTCGCCAGAAA+AGG | 0.398718 | 4.3:+87450801 | MS.gene034161:CDS |
| TTTCTCCGGATGAAAATAAC+CGG | 0.414016 | 4.3:+87451531 | MS.gene034161:CDS |
| ATCAAGGACAGCAACCTTGC+CGG | 0.414254 | 4.3:+87452953 | MS.gene034161:CDS |
| ATCTCTAAGCACTGTCTGAT+TGG | 0.416220 | 4.3:-87453114 | None:intergenic |
| ACCTTCCATGCCAATTTCTC+CGG | 0.418936 | 4.3:+87451517 | MS.gene034161:CDS |
| CAGTACATGGATGGTATTCA+TGG | 0.423116 | 4.3:+87450511 | None:intergenic |
| TGAACCACAGGGAGCGCTTA+GGG | 0.440040 | 4.3:+87452926 | MS.gene034161:intron |
| TCAGCTGATGCAGACTCATC+AGG | 0.441839 | 4.3:-87452255 | None:intergenic |
| GCAAGGTTGCTGTCCTTGAT+AGG | 0.445283 | 4.3:-87452950 | None:intergenic |
| ATTGGCATGGAAGGTAAGGT+TGG | 0.459291 | 4.3:-87451509 | None:intergenic |
| CACACTTTAATAATGGATCA+AGG | 0.470319 | 4.3:+87450724 | MS.gene034161:CDS |
| TTGAACCACAGGGAGCGCTT+AGG | 0.472073 | 4.3:+87452925 | MS.gene034161:intron |
| TTCGTAAAGAAGTAGCATTA+AGG | 0.488066 | 4.3:+87451745 | MS.gene034161:CDS |
| TTACACGGTATCTTGCTGTT+GGG | 0.489725 | 4.3:-87452325 | None:intergenic |
| GCAATGCTTGTGGACTTATG+TGG | 0.493003 | 4.3:+87452573 | MS.gene034161:CDS |
| CGGAACAAGTGAAGGTTTGA+CGG | 0.497532 | 4.3:+87452287 | MS.gene034161:CDS |
| GAAGATTTCCATTGTTAGAG+TGG | 0.498104 | 4.3:-87450693 | None:intergenic |
| CTTACACGGTATCTTGCTGT+TGG | 0.501886 | 4.3:-87452326 | None:intergenic |
| GGTTTGACGGTAGACAATAA+TGG | 0.505445 | 4.3:+87452300 | MS.gene034161:CDS |
| AAGCACTGTCTGATTGGCCT+CGG | 0.507209 | 4.3:-87453108 | None:intergenic |
| TATAGGATGTTGTTCATCAC+TGG | 0.518790 | 4.3:-87450554 | None:intergenic |
| TGTTCATATGGCATATGTAT+AGG | 0.519920 | 4.3:-87450571 | None:intergenic |
| AGACTCATCAGGATTGGACT+TGG | 0.520027 | 4.3:-87452244 | None:intergenic |
| AGAAATTGGCATGGAAGGTA+AGG | 0.522598 | 4.3:-87451513 | None:intergenic |
| TTCTCCATTAAACAAGAATG+AGG | 0.532237 | 4.3:+87452983 | MS.gene034161:CDS |
| TGGCTCTTCCAGTACATGGA+TGG | 0.532259 | 4.3:+87450502 | None:intergenic |
| TGCAACCCGTGATGTTCATA+TGG | 0.534256 | 4.3:-87450583 | None:intergenic |
| ATGATGCGGCGTGGACCTGA+AGG | 0.535411 | 4.3:+87452536 | MS.gene034161:CDS |
| AGAACCCTCTGCAATGCTTG+TGG | 0.537519 | 4.3:+87452563 | MS.gene034161:CDS |
| TGATGCAGACTCATCAGGAT+TGG | 0.539391 | 4.3:-87452250 | None:intergenic |
| GGTGAAATCCACTCTAACAA+TGG | 0.539967 | 4.3:+87450685 | MS.gene034161:CDS |
| GTATTCATGGTGTTGATTCG+CGG | 0.540049 | 4.3:+87450524 | MS.gene034161:CDS |
| ATAAATTGCGGAACAAGTGA+AGG | 0.554129 | 4.3:+87452279 | MS.gene034161:CDS |
| TCCGGAGAAATTGGCATGGA+AGG | 0.555042 | 4.3:-87451518 | None:intergenic |
| GAGCGCTTAGGGACCTATCA+AGG | 0.562951 | 4.3:+87452937 | MS.gene034161:CDS |
| TGGAGAATTATGTGCCGGCA+AGG | 0.571633 | 4.3:-87452967 | None:intergenic |
| ATGGATGACGATCAAAATAA+CGG | 0.572622 | 4.3:+87450628 | MS.gene034161:CDS |
| GGCATGGAAGGTAAGGTTGG+AGG | 0.573711 | 4.3:-87451506 | None:intergenic |
| ACACTTTAATAATGGATCAA+GGG | 0.577449 | 4.3:+87450725 | MS.gene034161:CDS |
| CAATGCTTGTGGACTTATGT+GGG | 0.580586 | 4.3:+87452574 | MS.gene034161:CDS |
| TTTAATGGAGAATTATGTGC+CGG | 0.581798 | 4.3:-87452972 | None:intergenic |
| TAGATTTCGTGAAAAGCGGA+AGG | 0.584600 | 4.3:+87451689 | MS.gene034161:CDS |
| TCAACGAAGCTAATCTCTGA+GGG | 0.586744 | 4.3:-87451665 | None:intergenic |
| ATATGCCATATGAACATCAC+GGG | 0.590381 | 4.3:+87450578 | MS.gene034161:CDS |
| TAATGTAAAGGTCTGTCATG+AGG | 0.590668 | 4.3:-87453147 | None:intergenic |
| AATGTAAAGGTCTGTCATGA+GGG | 0.591336 | 4.3:-87453146 | None:intergenic |
| TGATGCGGCGTGGACCTGAA+GGG | 0.602634 | 4.3:+87452537 | MS.gene034161:CDS |
| TATGAGCAATGGAAATGAGA+TGG | 0.602965 | 4.3:+87450609 | MS.gene034161:CDS |
| GGGTTGCACCATATGAGCAA+TGG | 0.606328 | 4.3:+87450598 | MS.gene034161:CDS |
| TGATTAGATTTCGTGAAAAG+CGG | 0.606344 | 4.3:+87451685 | MS.gene034161:CDS |
| CTGTACTACTGTTATTGGGA+GGG | 0.609779 | 4.3:+87451474 | MS.gene034161:CDS |
| CATATGCCATATGAACATCA+CGG | 0.625092 | 4.3:+87450577 | MS.gene034161:CDS |
| AGAAGTGCACGCCAATGATG+CGG | 0.629029 | 4.3:+87452522 | MS.gene034161:CDS |
| TCTGTACTACTGTTATTGGG+AGG | 0.631795 | 4.3:+87451473 | MS.gene034161:CDS |
| AACGGTGATTCTAACTGCGG+AGG | 0.632002 | 4.3:+87450646 | MS.gene034161:CDS |
| TTCATCCGGAGAAATTGGCA+TGG | 0.636383 | 4.3:-87451522 | None:intergenic |
| CATGTCAGTTGTAGGCATTG+TGG | 0.641895 | 4.3:+87452491 | MS.gene034161:intron |
| GCATCAGCTGAAATAAATTG+CGG | 0.642078 | 4.3:+87452267 | MS.gene034161:CDS |
| TTCTCCGGATGAAAATAACC+GGG | 0.649206 | 4.3:+87451532 | MS.gene034161:CDS |
| ATCAACGAAGCTAATCTCTG+AGG | 0.651895 | 4.3:-87451666 | None:intergenic |
| TAAGTCCACAAGCATTGCAG+AGG | 0.655536 | 4.3:-87452568 | None:intergenic |
| TGCACGCCAATGATGCGGCG+TGG | 0.659677 | 4.3:+87452527 | MS.gene034161:CDS |
| GGAGGAAGTGAGACTGCGGA+AGG | 0.665011 | 4.3:+87450664 | MS.gene034161:CDS |
| AAGTCCACAAGCATTGCAGA+GGG | 0.674174 | 4.3:-87452567 | None:intergenic |
| AATAACGGTGATTCTAACTG+CGG | 0.691144 | 4.3:+87450643 | MS.gene034161:CDS |
| CTGCGGAGGAAGTGAGACTG+CGG | 0.700049 | 4.3:+87450660 | MS.gene034161:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTAATTTATAATAATCTT+AGG | + | chr4.3:87451432-87451451 | MS.gene034161:intron | 10.0% |
| !! | GTATTCTAATCTATATATTA+TGG | + | chr4.3:87452393-87452412 | MS.gene034161:intron | 15.0% |
| !!! | ATTTTCAGAAATAATGAAAA+CGG | + | chr4.3:87450983-87451002 | MS.gene034161:intron | 15.0% |
| !!! | TTCATTTTAAATTTCTAACA+AGG | + | chr4.3:87450893-87450912 | MS.gene034161:intron | 15.0% |
| !! | AAACGAATAAATCAAAAAGA+AGG | - | chr4.3:87452890-87452909 | None:intergenic | 20.0% |
| !! | ATATAGAAAAACAATGTTGT+CGG | - | chr4.3:87452154-87452173 | None:intergenic | 20.0% |
| !! | CATACTATCTATGATAAAAT+AGG | - | chr4.3:87451302-87451321 | None:intergenic | 20.0% |
| !! | TATATATATGCTTATGAACT+AGG | - | chr4.3:87451273-87451292 | None:intergenic | 20.0% |
| !! | TCATTTCAACTAATAATCAT+AGG | - | chr4.3:87451924-87451943 | None:intergenic | 20.0% |
| !!! | ATAATTTTGTATAGCAACAT+AGG | - | chr4.3:87452660-87452679 | None:intergenic | 20.0% |
| !!! | TCATTTTCGTTTAGAATTTT+CGG | - | chr4.3:87451053-87451072 | None:intergenic | 20.0% |
| !!! | TTGACTTTTTAAAACATTTC+TGG | + | chr4.3:87451010-87451029 | MS.gene034161:intron | 20.0% |
| ! | AAAATGAAAACAGGATACAT+GGG | + | chr4.3:87451125-87451144 | MS.gene034161:intron | 25.0% |
| ! | AATTCTAAACGAAAATGATG+AGG | + | chr4.3:87451055-87451074 | MS.gene034161:intron | 25.0% |
| ! | ACTATCTATGATAAAATAGG+AGG | - | chr4.3:87451299-87451318 | None:intergenic | 25.0% |
| ! | ATTCTAAACGAAAATGATGA+GGG | + | chr4.3:87451056-87451075 | MS.gene034161:intron | 25.0% |
| ! | CAGGAAACATAGAAATTAAA+TGG | + | chr4.3:87451953-87451972 | MS.gene034161:intron | 25.0% |
| ! | CTAATACGAAAAACTTCTTT+AGG | + | chr4.3:87452190-87452209 | MS.gene034161:intron | 25.0% |
| ! | CTAGAAGATTATCATACATA+CGG | - | chr4.3:87452012-87452031 | None:intergenic | 25.0% |
| ! | CTATCTATGATAAAATAGGA+GGG | - | chr4.3:87451298-87451317 | None:intergenic | 25.0% |
| ! | GGTTGAAATTCTTCAAAATA+AGG | - | chr4.3:87452444-87452463 | None:intergenic | 25.0% |
| ! | TCGACATATCAATGATAAAA+TGG | - | chr4.3:87452744-87452763 | None:intergenic | 25.0% |
| !! | TTTAGGATGCAAAGAAATAA+AGG | + | chr4.3:87452207-87452226 | MS.gene034161:intron | 25.0% |
| !! | TTTTCAGAATAATAATTCCG+AGG | + | chr4.3:87453091-87453110 | MS.gene034161:intron | 25.0% |
| !! | TTTTTCGTATTAGTTAGCAA+GGG | - | chr4.3:87452183-87452202 | None:intergenic | 25.0% |
| !!! | ACACTTTAATAATGGATCAA+GGG | + | chr4.3:87450725-87450744 | MS.gene034161:CDS | 25.0% |
| !!! | ATATATTATGGTTGACTTGA+TGG | + | chr4.3:87452405-87452424 | MS.gene034161:intron | 25.0% |
| !!! | TTTTCATTTTTTGAACCACA+GGG | + | chr4.3:87452915-87452934 | MS.gene034161:intron | 25.0% |
| AAAAGATAGCAATTGACATG+AGG | - | chr4.3:87452630-87452649 | None:intergenic | 30.0% | |
| AAAGAAGTAGCATTAAGGTA+TGG | + | chr4.3:87451750-87451769 | MS.gene034161:intron | 30.0% | |
| AAGAAAGACTAATTCAGTGT+AGG | - | chr4.3:87452465-87452484 | None:intergenic | 30.0% | |
| ATATATGCTTATGAACTAGG+AGG | - | chr4.3:87451270-87451289 | None:intergenic | 30.0% | |
| ATCCATTGTTAATCCTGTTA+TGG | + | chr4.3:87451379-87451398 | MS.gene034161:intron | 30.0% | |
| ATGGATGACGATCAAAATAA+CGG | + | chr4.3:87450628-87450647 | MS.gene034161:CDS | 30.0% | |
| ATGTAGTGAATAACTGTGAT+AGG | + | chr4.3:87450929-87450948 | MS.gene034161:intron | 30.0% | |
| CAATCTGTACTACTGTTATT+GGG | + | chr4.3:87451470-87451489 | MS.gene034161:CDS | 30.0% | |
| CATTCAACTTGATTCAGATT+TGG | + | chr4.3:87452811-87452830 | MS.gene034161:intron | 30.0% | |
| GAAAATGAAAACAGGATACA+TGG | + | chr4.3:87451124-87451143 | MS.gene034161:intron | 30.0% | |
| GTATTACTACATTACTTGGT+TGG | + | chr4.3:87451554-87451573 | MS.gene034161:intron | 30.0% | |
| GTTGAAATGAAACTGAAAAC+AGG | + | chr4.3:87451934-87451953 | MS.gene034161:intron | 30.0% | |
| GTTGAAGTGAAAATGAAAAC+AGG | + | chr4.3:87451116-87451135 | MS.gene034161:intron | 30.0% | |
| TATATGCTTATGAACTAGGA+GGG | - | chr4.3:87451269-87451288 | None:intergenic | 30.0% | |
| TCAATCTGTACTACTGTTAT+TGG | + | chr4.3:87451469-87451488 | MS.gene034161:CDS | 30.0% | |
| TGACAGTCACACTTTAATAA+TGG | + | chr4.3:87450717-87450736 | MS.gene034161:CDS | 30.0% | |
| TGATTAGATTTCGTGAAAAG+CGG | + | chr4.3:87451685-87451704 | MS.gene034161:CDS | 30.0% | |
| TGTCCGAAAAATAATCGAAA+AGG | + | chr4.3:87452687-87452706 | MS.gene034161:intron | 30.0% | |
| TGTTCATATGGCATATGTAT+AGG | - | chr4.3:87450574-87450593 | None:intergenic | 30.0% | |
| TTCGTAAAGAAGTAGCATTA+AGG | + | chr4.3:87451745-87451764 | MS.gene034161:CDS | 30.0% | |
| TTCTCCATTAAACAAGAATG+AGG | + | chr4.3:87452983-87453002 | MS.gene034161:CDS | 30.0% | |
| TTTAATGGAGAATTATGTGC+CGG | - | chr4.3:87452975-87452994 | None:intergenic | 30.0% | |
| ! | GACTAACTTTTCTTCTAACA+TGG | + | chr4.3:87451240-87451259 | MS.gene034161:intron | 30.0% |
| ! | GCTCATGAAACATTTTATCA+GGG | + | chr4.3:87451612-87451631 | MS.gene034161:intron | 30.0% |
| ! | GTTTTTCGTATTAGTTAGCA+AGG | - | chr4.3:87452184-87452203 | None:intergenic | 30.0% |
| ! | TCAACCTCATTCTTGTTTAA+TGG | - | chr4.3:87452990-87453009 | None:intergenic | 30.0% |
| ! | TTATTTTCATCCGGAGAAAT+TGG | - | chr4.3:87451530-87451549 | None:intergenic | 30.0% |
| !! | CAAATCTGAATCAAGTTGAA+TGG | - | chr4.3:87452813-87452832 | None:intergenic | 30.0% |
| !! | CACACTTTAATAATGGATCA+AGG | + | chr4.3:87450724-87450743 | MS.gene034161:CDS | 30.0% |
| !! | GGACCTTTTCGATTATTTTT+CGG | - | chr4.3:87452693-87452712 | None:intergenic | 30.0% |
| !!! | ATAAGTTGATGAACCTTTTC+TGG | - | chr4.3:87450817-87450836 | None:intergenic | 30.0% |
| !!! | ATTTGGCTTTTATACTCGAA+TGG | + | chr4.3:87452828-87452847 | MS.gene034161:intron | 30.0% |
| !!! | GATGTTTGGTTTTTCTTTTC+TGG | + | chr4.3:87451172-87451191 | MS.gene034161:intron | 30.0% |
| !!! | GTTTTCATTTTTTGAACCAC+AGG | + | chr4.3:87452914-87452933 | MS.gene034161:intron | 30.0% |
| AAAAACAATGTTGTCGGTCA+TGG | - | chr4.3:87452148-87452167 | None:intergenic | 35.0% | |
| AATAACGGTGATTCTAACTG+CGG | + | chr4.3:87450643-87450662 | MS.gene034161:CDS | 35.0% | |
| ACCAAACATCCTTAAAAGCA+AGG | - | chr4.3:87451162-87451181 | None:intergenic | 35.0% | |
| ATAAATTGCGGAACAAGTGA+AGG | + | chr4.3:87452279-87452298 | MS.gene034161:CDS | 35.0% | |
| ATATGCCATATGAACATCAC+GGG | + | chr4.3:87450578-87450597 | MS.gene034161:CDS | 35.0% | |
| ATGGATCAAGGGAATGATAT+TGG | + | chr4.3:87450736-87450755 | MS.gene034161:CDS | 35.0% | |
| ATGTGGGCAAATAAGGTAAA+TGG | + | chr4.3:87452590-87452609 | MS.gene034161:intron | 35.0% | |
| CATATGCCATATGAACATCA+CGG | + | chr4.3:87450577-87450596 | MS.gene034161:CDS | 35.0% | |
| CCAAGTAATGTAGTAATACC+CGG | - | chr4.3:87451553-87451572 | None:intergenic | 35.0% | |
| GAAGATCTAAGTTCCTATGT+TGG | - | chr4.3:87453053-87453072 | None:intergenic | 35.0% | |
| GAAGATTTCCATTGTTAGAG+TGG | - | chr4.3:87450696-87450715 | None:intergenic | 35.0% | |
| GCATCAGCTGAAATAAATTG+CGG | + | chr4.3:87452267-87452286 | MS.gene034161:CDS | 35.0% | |
| GTCCATAACAGGATTAACAA+TGG | - | chr4.3:87451384-87451403 | None:intergenic | 35.0% | |
| TAACTGTGATAGGAAGAAGA+TGG | + | chr4.3:87450939-87450958 | MS.gene034161:intron | 35.0% | |
| TATAGGATGTTGTTCATCAC+TGG | - | chr4.3:87450557-87450576 | None:intergenic | 35.0% | |
| TATGAGCAATGGAAATGAGA+TGG | + | chr4.3:87450609-87450628 | MS.gene034161:CDS | 35.0% | |
| TCTCATTTCCATTGCTCATA+TGG | - | chr4.3:87450609-87450628 | None:intergenic | 35.0% | |
| TTTCAACTCATGTCAGTTGT+AGG | + | chr4.3:87452483-87452502 | MS.gene034161:intron | 35.0% | |
| TTTCTCCGGATGAAAATAAC+CGG | + | chr4.3:87451531-87451550 | MS.gene034161:CDS | 35.0% | |
| ! | CAGCTTACTTTGTCTTTTCA+GGG | + | chr4.3:87450763-87450782 | MS.gene034161:CDS | 35.0% |
| ! | GGCTCATGAAACATTTTATC+AGG | + | chr4.3:87451611-87451630 | MS.gene034161:intron | 35.0% |
| ! | GTACTTTGTTGTCGATGAAT+TGG | + | chr4.3:87451200-87451219 | MS.gene034161:intron | 35.0% |
| ! | GTTTTTGCTGGTCAAATATC+TGG | + | chr4.3:87451590-87451609 | MS.gene034161:intron | 35.0% |
| ! | TCAGCTTACTTTGTCTTTTC+AGG | + | chr4.3:87450762-87450781 | MS.gene034161:CDS | 35.0% |
| !! | AATACCCGGTTATTTTCATC+CGG | - | chr4.3:87451539-87451558 | None:intergenic | 35.0% |
| !! | GTTCGATTGATAGTTTTTGC+TGG | + | chr4.3:87451578-87451597 | MS.gene034161:intron | 35.0% |
| !! | TGGCTCATTTTTGAACAAGA+GGG | + | chr4.3:87452354-87452373 | MS.gene034161:intron | 35.0% |
| AAGATACCGTGTAAGTTCAC+TGG | + | chr4.3:87452334-87452353 | MS.gene034161:intron | 40.0% | |
| AATGAGCCAGTGAACTTACA+CGG | - | chr4.3:87452343-87452362 | None:intergenic | 40.0% | |
| ACAGGATACATGGGAAGTAA+TGG | + | chr4.3:87451134-87451153 | MS.gene034161:intron | 40.0% | |
| AGAAATTGGCATGGAAGGTA+AGG | - | chr4.3:87451516-87451535 | None:intergenic | 40.0% | |
| ATCAACGAAGCTAATCTCTG+AGG | - | chr4.3:87451669-87451688 | None:intergenic | 40.0% | |
| CAATGCTTGTGGACTTATGT+GGG | + | chr4.3:87452574-87452593 | MS.gene034161:CDS | 40.0% | |
| CAATTATAACACACGCCTCA+AGG | - | chr4.3:87451337-87451356 | None:intergenic | 40.0% | |
| CCGGGTATTACTACATTACT+TGG | + | chr4.3:87451550-87451569 | MS.gene034161:intron | 40.0% | |
| CTAAAATCAAACCCTGTGCA+GGG | - | chr4.3:87451411-87451430 | None:intergenic | 40.0% | |
| CTGTACTACTGTTATTGGGA+GGG | + | chr4.3:87451474-87451493 | MS.gene034161:CDS | 40.0% | |
| GATGTTTCTCTTGCCAACAT+AGG | + | chr4.3:87453037-87453056 | MS.gene034161:intron | 40.0% | |
| GGTGAAATCCACTCTAACAA+TGG | + | chr4.3:87450685-87450704 | MS.gene034161:CDS | 40.0% | |
| GGTTTGACGGTAGACAATAA+TGG | + | chr4.3:87452300-87452319 | MS.gene034161:CDS | 40.0% | |
| TAGATTTCGTGAAAAGCGGA+AGG | + | chr4.3:87451689-87451708 | MS.gene034161:CDS | 40.0% | |
| TCAACGAAGCTAATCTCTGA+GGG | - | chr4.3:87451668-87451687 | None:intergenic | 40.0% | |
| TCTGTACTACTGTTATTGGG+AGG | + | chr4.3:87451473-87451492 | MS.gene034161:CDS | 40.0% | |
| TGGACTTATGTGGGCAAATA+AGG | + | chr4.3:87452583-87452602 | MS.gene034161:CDS | 40.0% | |
| TGGACTTGGCAGATGTAAAT+TGG | - | chr4.3:87452233-87452252 | None:intergenic | 40.0% | |
| TGGATCTGTTTACGACGAAT+TGG | - | chr4.3:87452793-87452812 | None:intergenic | 40.0% | |
| TTCTCCGGATGAAAATAACC+GGG | + | chr4.3:87451532-87451551 | MS.gene034161:CDS | 40.0% | |
| ! | AGGCACAGTTGTTTGTTGAA+AGG | - | chr4.3:87452870-87452889 | None:intergenic | 40.0% |
| ! | ATCTCTAAGCACTGTCTGAT+TGG | - | chr4.3:87453117-87453136 | None:intergenic | 40.0% |
| ! | TCTAAAATCAAACCCTGTGC+AGG | - | chr4.3:87451412-87451431 | None:intergenic | 40.0% |
| !! | CTGGCTCATTTTTGAACAAG+AGG | + | chr4.3:87452353-87452372 | MS.gene034161:intron | 40.0% |
| !! | GCCTTGCTTTTAAGGATGTT+TGG | + | chr4.3:87451158-87451177 | MS.gene034161:intron | 40.0% |
| !! | GTAATGGAGCCTTGCTTTTA+AGG | + | chr4.3:87451150-87451169 | MS.gene034161:intron | 40.0% |
| !! | GTATTCATGGTGTTGATTCG+CGG | + | chr4.3:87450524-87450543 | MS.gene034161:CDS | 40.0% |
| !! | TAATCTTAGGTGTCGTTGCT+AGG | + | chr4.3:87451445-87451464 | MS.gene034161:intron | 40.0% |
| !! | TTACACGGTATCTTGCTGTT+GGG | - | chr4.3:87452328-87452347 | None:intergenic | 40.0% |
| ACAGAACTCCATTGGAGTGT+CGG | - | chr4.3:87451982-87452001 | None:intergenic | 45.0% | |
| ACCTTCCATGCCAATTTCTC+CGG | + | chr4.3:87451517-87451536 | MS.gene034161:CDS | 45.0% | |
| AGACTCATCAGGATTGGACT+TGG | - | chr4.3:87452247-87452266 | None:intergenic | 45.0% | |
| ATCGAAAAGGTCCATGACTG+TGG | + | chr4.3:87452700-87452719 | MS.gene034161:intron | 45.0% | |
| ATGCAGTTTAACACGCCTTG+AGG | + | chr4.3:87451319-87451338 | MS.gene034161:intron | 45.0% | |
| ATTGGCATGGAAGGTAAGGT+TGG | - | chr4.3:87451512-87451531 | None:intergenic | 45.0% | |
| CGGAACAAGTGAAGGTTTGA+CGG | + | chr4.3:87452287-87452306 | MS.gene034161:CDS | 45.0% | |
| GCAATGCTTGTGGACTTATG+TGG | + | chr4.3:87452573-87452592 | MS.gene034161:CDS | 45.0% | |
| GTGTTACGACAGAACTCCAT+TGG | - | chr4.3:87451990-87452009 | None:intergenic | 45.0% | |
| TAAACCACAGTCCACAGTCA+TGG | - | chr4.3:87452714-87452733 | None:intergenic | 45.0% | |
| TGATGCAGACTCATCAGGAT+TGG | - | chr4.3:87452253-87452272 | None:intergenic | 45.0% | |
| TGCAACCCGTGATGTTCATA+TGG | - | chr4.3:87450586-87450605 | None:intergenic | 45.0% | |
| TGCAGGGAATAGTCCATAAC+AGG | - | chr4.3:87451395-87451414 | None:intergenic | 45.0% | |
| TTCATCCGGAGAAATTGGCA+TGG | - | chr4.3:87451525-87451544 | None:intergenic | 45.0% | |
| ! | AAGTCCACAAGCATTGCAGA+GGG | - | chr4.3:87452570-87452589 | None:intergenic | 45.0% |
| ! | CATGTCAGTTGTAGGCATTG+TGG | + | chr4.3:87452491-87452510 | MS.gene034161:intron | 45.0% |
| ! | CTTACACGGTATCTTGCTGT+TGG | - | chr4.3:87452329-87452348 | None:intergenic | 45.0% |
| ! | TAAGTCCACAAGCATTGCAG+AGG | - | chr4.3:87452571-87452590 | None:intergenic | 45.0% |
| ! | TATGGACTATTCCCTGCACA+GGG | + | chr4.3:87451397-87451416 | MS.gene034161:intron | 45.0% |
| ! | TGAGGGACGCTGAATTTTTC+TGG | - | chr4.3:87451651-87451670 | None:intergenic | 45.0% |
| ! | TTATGGACTATTCCCTGCAC+AGG | + | chr4.3:87451396-87451415 | MS.gene034161:intron | 45.0% |
| !! | ATGAACCTTTTCTGGCGACA+CGG | - | chr4.3:87450809-87450828 | None:intergenic | 45.0% |
| AACGGTGATTCTAACTGCGG+AGG | + | chr4.3:87450646-87450665 | MS.gene034161:CDS | 50.0% | |
| AGAACCCTCTGCAATGCTTG+TGG | + | chr4.3:87452563-87452582 | MS.gene034161:CDS | 50.0% | |
| ATCAAGGACAGCAACCTTGC+CGG | + | chr4.3:87452953-87452972 | MS.gene034161:CDS | 50.0% | |
| GCAAGGTTGCTGTCCTTGAT+AGG | - | chr4.3:87452953-87452972 | None:intergenic | 50.0% | |
| GGGTTGCACCATATGAGCAA+TGG | + | chr4.3:87450598-87450617 | MS.gene034161:CDS | 50.0% | |
| TCAGCTGATGCAGACTCATC+AGG | - | chr4.3:87452258-87452277 | None:intergenic | 50.0% | |
| TCCGGAGAAATTGGCATGGA+AGG | - | chr4.3:87451521-87451540 | None:intergenic | 50.0% | |
| ! | AGAAGTGCACGCCAATGATG+CGG | + | chr4.3:87452522-87452541 | MS.gene034161:CDS | 50.0% |
| ! | CAAGCATTGCAGAGGGTTCT+TGG | - | chr4.3:87452563-87452582 | None:intergenic | 50.0% |
| ! | CAGAACTCCATTGGAGTGTC+GGG | - | chr4.3:87451981-87452000 | None:intergenic | 50.0% |
| ! | TGGAGAATTATGTGCCGGCA+AGG | - | chr4.3:87452970-87452989 | None:intergenic | 50.0% |
| !! | AAGCACTGTCTGATTGGCCT+CGG | - | chr4.3:87453111-87453130 | None:intergenic | 50.0% |
| !! | AGAACTCCATTGGAGTGTCG+GGG | - | chr4.3:87451980-87451999 | None:intergenic | 50.0% |
| AATGGACCCCGACACTCCAA+TGG | + | chr4.3:87451971-87451990 | MS.gene034161:intron | 55.0% | |
| CAATGTTGTCGGTCATGGCG+TGG | - | chr4.3:87452143-87452162 | None:intergenic | 55.0% | |
| GAGCGCTTAGGGACCTATCA+AGG | + | chr4.3:87452937-87452956 | MS.gene034161:CDS | 55.0% | |
| GGCATGGAAGGTAAGGTTGG+AGG | - | chr4.3:87451509-87451528 | None:intergenic | 55.0% | |
| GTCGGTCATGGCGTGGATTT+AGG | - | chr4.3:87452136-87452155 | None:intergenic | 55.0% | |
| ! | AGGTCCATGACTGTGGACTG+TGG | + | chr4.3:87452707-87452726 | MS.gene034161:intron | 55.0% |
| !! | TGAACCACAGGGAGCGCTTA+GGG | + | chr4.3:87452926-87452945 | MS.gene034161:intron | 55.0% |
| !! | TTGAACCACAGGGAGCGCTT+AGG | + | chr4.3:87452925-87452944 | MS.gene034161:intron | 55.0% |
| ATGATGCGGCGTGGACCTGA+AGG | + | chr4.3:87452536-87452555 | MS.gene034161:CDS | 60.0% | |
| CAGAGGGTTCTTGGCCCTTC+AGG | - | chr4.3:87452554-87452573 | None:intergenic | 60.0% | |
| CGACTCCGTGTCGCCAGAAA+AGG | + | chr4.3:87450801-87450820 | MS.gene034161:CDS | 60.0% | |
| CTGCGGAGGAAGTGAGACTG+CGG | + | chr4.3:87450660-87450679 | MS.gene034161:CDS | 60.0% | |
| GGAGGAAGTGAGACTGCGGA+AGG | + | chr4.3:87450664-87450683 | MS.gene034161:CDS | 60.0% | |
| TCAGGTCCACGCCGCATCAT+TGG | - | chr4.3:87452536-87452555 | None:intergenic | 60.0% | |
| TGATGCGGCGTGGACCTGAA+GGG | + | chr4.3:87452537-87452556 | MS.gene034161:CDS | 60.0% | |
| AGGTCCCTAAGCGCTCCCTG+TGG | - | chr4.3:87452933-87452952 | None:intergenic | 65.0% | |
| TGCACGCCAATGATGCGGCG+TGG | + | chr4.3:87452527-87452546 | MS.gene034161:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 87450517 | 87453154 | 87450517 | ID=MS.gene034161 |
| chr4.3 | mRNA | 87450517 | 87453154 | 87450517 | ID=MS.gene034161.t1;Parent=MS.gene034161 |
| chr4.3 | exon | 87450517 | 87450822 | 87450517 | ID=MS.gene034161.t1.exon1;Parent=MS.gene034161.t1 |
| chr4.3 | CDS | 87450517 | 87450822 | 87450517 | ID=cds.MS.gene034161.t1;Parent=MS.gene034161.t1 |
| chr4.3 | exon | 87451467 | 87451553 | 87451467 | ID=MS.gene034161.t1.exon2;Parent=MS.gene034161.t1 |
| chr4.3 | CDS | 87451467 | 87451553 | 87451467 | ID=cds.MS.gene034161.t1;Parent=MS.gene034161.t1 |
| chr4.3 | exon | 87451633 | 87451766 | 87451633 | ID=MS.gene034161.t1.exon3;Parent=MS.gene034161.t1 |
| chr4.3 | CDS | 87451633 | 87451766 | 87451633 | ID=cds.MS.gene034161.t1;Parent=MS.gene034161.t1 |
| chr4.3 | exon | 87452212 | 87452343 | 87452212 | ID=MS.gene034161.t1.exon4;Parent=MS.gene034161.t1 |
| chr4.3 | CDS | 87452212 | 87452343 | 87452212 | ID=cds.MS.gene034161.t1;Parent=MS.gene034161.t1 |
| chr4.3 | exon | 87452499 | 87452604 | 87452499 | ID=MS.gene034161.t1.exon5;Parent=MS.gene034161.t1 |
| chr4.3 | CDS | 87452499 | 87452604 | 87452499 | ID=cds.MS.gene034161.t1;Parent=MS.gene034161.t1 |
| chr4.3 | exon | 87452936 | 87453004 | 87452936 | ID=MS.gene034161.t1.exon6;Parent=MS.gene034161.t1 |
| chr4.3 | CDS | 87452936 | 87453004 | 87452936 | ID=cds.MS.gene034161.t1;Parent=MS.gene034161.t1 |
| chr4.3 | exon | 87453098 | 87453154 | 87453098 | ID=MS.gene034161.t1.exon7;Parent=MS.gene034161.t1 |
| chr4.3 | CDS | 87453098 | 87453154 | 87453098 | ID=cds.MS.gene034161.t1;Parent=MS.gene034161.t1 |
| Gene Sequence |
| Protein sequence |
