Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene034190.t1 | XP_024632961.1 | 84.8 | 800 | 94 | 4 | 1 | 772 | 1 | 800 | 0.00E+00 | 1355.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene034190.t1 | Q9SZL8 | 27.0 | 636 | 394 | 11 | 32 | 665 | 70 | 637 | 4.4e-64 | 247.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene034190.t1 | D3YBB9 | 76.9 | 774 | 159 | 4 | 1 | 764 | 49 | 812 | 0.0e+00 | 1194.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene034190.t1 | TF | FAR1 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene034190.t1 | MTR_0558s0020 | 87.500 | 296 | 36 | 1 | 1 | 295 | 1 | 296 | 0.0 | 548 |
MS.gene034190.t1 | MTR_1g083640 | 83.099 | 284 | 32 | 1 | 1 | 268 | 1 | 284 | 2.00e-172 | 497 |
MS.gene034190.t1 | MTR_8g446020 | 73.898 | 295 | 38 | 1 | 1 | 295 | 1 | 256 | 1.93e-152 | 445 |
MS.gene034190.t1 | MTR_6g090505 | 83.544 | 237 | 39 | 0 | 65 | 301 | 1 | 237 | 2.00e-142 | 423 |
MS.gene034190.t1 | MTR_6g090505 | 67.647 | 102 | 6 | 2 | 396 | 495 | 230 | 306 | 3.80e-34 | 134 |
MS.gene034190.t1 | MTR_6g090505 | 75.510 | 49 | 12 | 0 | 567 | 615 | 314 | 362 | 9.35e-11 | 64.7 |
MS.gene034190.t1 | MTR_2g014100 | 82.449 | 245 | 34 | 1 | 1 | 236 | 1 | 245 | 3.38e-142 | 418 |
MS.gene034190.t1 | MTR_0337s0040 | 72.031 | 261 | 33 | 2 | 1 | 260 | 1 | 222 | 4.53e-124 | 371 |
MS.gene034190.t1 | MTR_3g008240 | 84.236 | 203 | 31 | 1 | 1 | 202 | 1 | 203 | 4.63e-118 | 354 |
MS.gene034190.t1 | MTR_4g040430 | 83.663 | 202 | 29 | 1 | 1 | 202 | 1 | 198 | 1.84e-117 | 352 |
MS.gene034190.t1 | MTR_0337s0060 | 58.861 | 316 | 30 | 4 | 447 | 759 | 21 | 239 | 1.46e-108 | 331 |
MS.gene034190.t1 | MTR_5g071590 | 74.444 | 180 | 33 | 2 | 1 | 167 | 1 | 180 | 2.70e-90 | 281 |
MS.gene034190.t1 | MTR_1g055240 | 88.028 | 142 | 17 | 0 | 91 | 232 | 3 | 144 | 7.78e-87 | 271 |
MS.gene034190.t1 | MTR_0019s0290 | 82.353 | 153 | 24 | 1 | 84 | 233 | 8 | 160 | 7.01e-86 | 269 |
MS.gene034190.t1 | MTR_3g028680 | 81.013 | 158 | 27 | 1 | 618 | 772 | 1 | 158 | 6.34e-84 | 265 |
MS.gene034190.t1 | MTR_2g067090 | 78.065 | 155 | 31 | 1 | 621 | 772 | 99 | 253 | 3.37e-75 | 246 |
MS.gene034190.t1 | MTR_4g133495 | 62.088 | 182 | 43 | 2 | 576 | 754 | 88 | 246 | 3.97e-66 | 221 |
MS.gene034190.t1 | MTR_4g133340 | 62.088 | 182 | 43 | 2 | 576 | 754 | 88 | 246 | 3.97e-66 | 221 |
MS.gene034190.t1 | MTR_1281s0010 | 82.569 | 109 | 19 | 0 | 19 | 127 | 1 | 109 | 1.88e-57 | 191 |
MS.gene034190.t1 | MTR_6g051425 | 32.075 | 318 | 185 | 6 | 40 | 341 | 22 | 324 | 1.31e-38 | 147 |
MS.gene034190.t1 | MTR_4g008820 | 83.750 | 80 | 12 | 1 | 1 | 79 | 125 | 204 | 1.74e-31 | 131 |
MS.gene034190.t1 | MTR_8g046060 | 77.273 | 88 | 11 | 2 | 1 | 79 | 91 | 178 | 3.77e-31 | 122 |
MS.gene034190.t1 | MTR_2g067130 | 62.963 | 81 | 24 | 2 | 695 | 772 | 46 | 123 | 5.23e-22 | 93.6 |
MS.gene034190.t1 | MTR_1g070355 | 26.852 | 324 | 216 | 6 | 41 | 362 | 80 | 384 | 2.33e-19 | 93.2 |
MS.gene034190.t1 | MTR_0402s0040 | 25.405 | 185 | 119 | 4 | 49 | 233 | 40 | 205 | 2.06e-14 | 77.0 |
MS.gene034190.t1 | MTR_0337s0050 | 75.000 | 36 | 9 | 0 | 259 | 294 | 14 | 49 | 1.51e-13 | 67.0 |
MS.gene034190.t1 | MTR_4g035820 | 22.414 | 290 | 192 | 7 | 17 | 299 | 61 | 324 | 7.44e-13 | 72.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene034190.t1 | AT4G38180 | 27.769 | 641 | 383 | 13 | 32 | 665 | 70 | 637 | 1.08e-70 | 248 |
MS.gene034190.t1 | AT4G15090 | 25.000 | 696 | 435 | 15 | 50 | 741 | 66 | 678 | 3.59e-59 | 216 |
MS.gene034190.t1 | AT4G15090 | 25.000 | 696 | 435 | 15 | 50 | 741 | 66 | 678 | 3.59e-59 | 216 |
MS.gene034190.t1 | AT4G15090 | 25.000 | 696 | 435 | 15 | 50 | 741 | 66 | 678 | 3.59e-59 | 216 |
MS.gene034190.t1 | AT4G15090 | 25.000 | 696 | 435 | 15 | 50 | 741 | 66 | 678 | 3.59e-59 | 216 |
MS.gene034190.t1 | AT4G15090 | 25.000 | 696 | 435 | 15 | 50 | 741 | 66 | 678 | 3.59e-59 | 216 |
MS.gene034190.t1 | AT2G27110 | 25.070 | 714 | 423 | 19 | 10 | 719 | 29 | 634 | 8.24e-54 | 200 |
MS.gene034190.t1 | AT2G27110 | 25.070 | 714 | 423 | 19 | 10 | 719 | 29 | 634 | 8.24e-54 | 200 |
MS.gene034190.t1 | AT2G27110 | 27.308 | 509 | 313 | 11 | 213 | 719 | 36 | 489 | 4.71e-53 | 196 |
MS.gene034190.t1 | AT3G06250 | 25.118 | 633 | 351 | 16 | 34 | 661 | 189 | 703 | 3.77e-52 | 194 |
MS.gene034190.t1 | AT3G06250 | 25.118 | 633 | 351 | 16 | 34 | 661 | 189 | 703 | 3.77e-52 | 194 |
MS.gene034190.t1 | AT3G06250 | 25.118 | 633 | 351 | 16 | 34 | 661 | 189 | 703 | 3.77e-52 | 194 |
MS.gene034190.t1 | AT1G76320 | 24.815 | 677 | 413 | 19 | 50 | 720 | 12 | 598 | 3.70e-50 | 187 |
MS.gene034190.t1 | AT1G76320 | 24.332 | 674 | 418 | 17 | 50 | 719 | 12 | 597 | 2.09e-49 | 186 |
MS.gene034190.t1 | AT1G76320 | 24.852 | 676 | 412 | 19 | 50 | 719 | 12 | 597 | 2.20e-49 | 186 |
MS.gene034190.t1 | AT1G76320 | 24.852 | 676 | 412 | 19 | 50 | 719 | 12 | 597 | 2.20e-49 | 186 |
MS.gene034190.t1 | AT3G22170 | 22.466 | 730 | 449 | 17 | 34 | 753 | 69 | 691 | 1.24e-47 | 182 |
MS.gene034190.t1 | AT3G22170 | 22.466 | 730 | 449 | 17 | 34 | 753 | 69 | 691 | 1.24e-47 | 182 |
MS.gene034190.t1 | AT5G18960 | 24.730 | 647 | 359 | 18 | 24 | 661 | 200 | 727 | 1.55e-46 | 178 |
MS.gene034190.t1 | AT5G18960 | 24.730 | 647 | 359 | 18 | 24 | 661 | 200 | 727 | 1.55e-46 | 178 |
MS.gene034190.t1 | AT4G38170 | 24.532 | 481 | 295 | 13 | 235 | 703 | 24 | 448 | 7.51e-44 | 167 |
MS.gene034190.t1 | AT1G10240 | 24.719 | 623 | 377 | 19 | 49 | 659 | 62 | 604 | 5.17e-42 | 164 |
MS.gene034190.t1 | AT1G10240 | 24.719 | 623 | 377 | 19 | 49 | 659 | 62 | 604 | 5.17e-42 | 164 |
MS.gene034190.t1 | AT5G28530 | 24.100 | 639 | 388 | 17 | 40 | 660 | 60 | 619 | 7.98e-42 | 163 |
MS.gene034190.t1 | AT5G28530 | 23.944 | 639 | 385 | 18 | 40 | 660 | 60 | 615 | 5.82e-41 | 160 |
MS.gene034190.t1 | AT5G28530 | 23.944 | 639 | 385 | 18 | 40 | 660 | 60 | 615 | 5.82e-41 | 160 |
MS.gene034190.t1 | AT2G32250 | 23.490 | 745 | 433 | 20 | 4 | 743 | 10 | 622 | 2.41e-39 | 156 |
MS.gene034190.t1 | AT2G32250 | 23.490 | 745 | 433 | 20 | 4 | 743 | 10 | 622 | 3.32e-39 | 156 |
MS.gene034190.t1 | AT2G32250 | 23.490 | 745 | 433 | 20 | 4 | 743 | 10 | 622 | 3.32e-39 | 156 |
MS.gene034190.t1 | AT2G32250 | 23.490 | 745 | 433 | 20 | 4 | 743 | 10 | 622 | 3.86e-39 | 156 |
MS.gene034190.t1 | AT2G32250 | 23.490 | 745 | 433 | 20 | 4 | 743 | 10 | 622 | 3.86e-39 | 156 |
MS.gene034190.t1 | AT2G32250 | 23.490 | 745 | 433 | 20 | 4 | 743 | 10 | 622 | 3.86e-39 | 156 |
MS.gene034190.t1 | AT2G32250 | 23.446 | 708 | 408 | 18 | 41 | 743 | 3 | 581 | 1.85e-38 | 154 |
MS.gene034190.t1 | AT2G32250 | 23.446 | 708 | 408 | 18 | 41 | 743 | 3 | 581 | 2.12e-38 | 153 |
MS.gene034190.t1 | AT1G80010 | 23.913 | 644 | 385 | 23 | 41 | 662 | 101 | 661 | 1.30e-36 | 147 |
MS.gene034190.t1 | AT1G52520 | 22.080 | 625 | 407 | 16 | 41 | 662 | 91 | 638 | 2.20e-33 | 137 |
MS.gene034190.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 2.48e-27 | 119 |
MS.gene034190.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.23e-12 | 71.2 |
MS.gene034190.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 2.60e-27 | 119 |
MS.gene034190.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.20e-12 | 71.2 |
MS.gene034190.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 2.60e-27 | 119 |
MS.gene034190.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.20e-12 | 71.2 |
MS.gene034190.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 219 | 483 | 106 | 369 | 2.60e-27 | 118 |
MS.gene034190.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 591 | 721 | 438 | 558 | 2.16e-12 | 71.2 |
MS.gene034190.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 219 | 483 | 177 | 440 | 2.98e-27 | 119 |
MS.gene034190.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 591 | 721 | 509 | 629 | 2.62e-12 | 70.9 |
MS.gene034190.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 3.81e-27 | 118 |
MS.gene034190.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.34e-12 | 71.2 |
MS.gene034190.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 3.81e-27 | 118 |
MS.gene034190.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.34e-12 | 71.2 |
MS.gene034190.t1 | AT5G28530 | 21.781 | 629 | 352 | 20 | 40 | 660 | 60 | 556 | 1.35e-22 | 103 |
MS.gene034190.t1 | AT5G28530 | 21.622 | 629 | 349 | 21 | 40 | 660 | 60 | 552 | 7.38e-22 | 101 |
Find 116 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCATGCTGAGTTGGACTTTA+AGG | 0.133287 | 4.4:+90404432 | MS.gene034190:CDS |
TTTCGATGAGTTAACTAATT+TGG | 0.156761 | 4.4:+90404123 | MS.gene034190:CDS |
AGTCGCTTCTTTGACCTAAT+TGG | 0.186128 | 4.4:-90405258 | None:intergenic |
CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 4.4:+90404390 | MS.gene034190:CDS |
CAACAAGATTATGCTCTATT+TGG | 0.198611 | 4.4:+90403339 | MS.gene034190:CDS |
TTCATTTCAGCTGCCTTTCT+TGG | 0.201003 | 4.4:+90403842 | MS.gene034190:intron |
CATCGTAAGAGTGTGTTATT+TGG | 0.276792 | 4.4:+90403875 | MS.gene034190:CDS |
TATGGTTTGAGGTTTCTTAT+TGG | 0.280533 | 4.4:-90403969 | None:intergenic |
TTCTTTGACCTAATTGGATT+TGG | 0.299426 | 4.4:-90405252 | None:intergenic |
AATCAGATTTCGACTACAAT+TGG | 0.318540 | 4.4:+90404164 | MS.gene034190:CDS |
TGTTCTTGAGGCAGGGAAAA+AGG | 0.322946 | 4.4:+90405104 | MS.gene034190:CDS |
ACCAGCCTGGTCTGTGTATA+TGG | 0.341000 | 4.4:-90403987 | None:intergenic |
GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 4.4:-90403389 | None:intergenic |
GGTTTCGAATGTTGATGTTT+TGG | 0.354913 | 4.4:+90404687 | MS.gene034190:CDS |
TATGCATTGGTCTTCAGTTT+GGG | 0.370760 | 4.4:+90404264 | MS.gene034190:CDS |
CTCAACGGTGTTCTTGAGGC+AGG | 0.386173 | 4.4:+90405096 | MS.gene034190:CDS |
AACAATAAATATCGGCCATT+AGG | 0.388497 | 4.4:+90403396 | MS.gene034190:CDS |
ACCGAACAAACAATAAATAT+CGG | 0.389395 | 4.4:+90403388 | MS.gene034190:CDS |
GTATGCATTGGTCTTCAGTT+TGG | 0.392120 | 4.4:+90404263 | MS.gene034190:CDS |
GTCTTTAGTGCCAACATTCA+TGG | 0.395146 | 4.4:-90404980 | None:intergenic |
TTCTCATACTCAACAAGAAC+TGG | 0.395633 | 4.4:-90402859 | None:intergenic |
AAGAAAGACCAAATCCAATT+AGG | 0.397771 | 4.4:+90405244 | MS.gene034190:CDS |
TTTGGTCTTTCTTTGAACTT+TGG | 0.398856 | 4.4:-90405234 | None:intergenic |
TTCCTTCAAATACTATTATG+AGG | 0.399583 | 4.4:+90404564 | MS.gene034190:CDS |
GAGGAGTTTCTTATTTCTAA+AGG | 0.403538 | 4.4:+90405129 | MS.gene034190:CDS |
TAAAGAATCATGGAAGTCTT+TGG | 0.408500 | 4.4:+90402630 | MS.gene034190:CDS |
CATGTCGTATGTTTGAGAAC+CGG | 0.411671 | 4.4:+90404812 | MS.gene034190:CDS |
GATTATGATCTTCAAACCTT+GGG | 0.413114 | 4.4:-90404735 | None:intergenic |
ATAACACTGGATTCTCTGTT+AGG | 0.417808 | 4.4:+90402701 | MS.gene034190:CDS |
CGATTATGATCTTCAAACCT+TGG | 0.425681 | 4.4:-90404736 | None:intergenic |
CGTTATGTTTGTAACAAAGA+AGG | 0.427485 | 4.4:+90402784 | MS.gene034190:CDS |
CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 4.4:+90403036 | MS.gene034190:CDS |
AGCTGGAATATATTTGAAGT+TGG | 0.433136 | 4.4:+90402918 | MS.gene034190:CDS |
TGGTCTGTGTATATGGTTTG+AGG | 0.447350 | 4.4:-90403980 | None:intergenic |
GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 4.4:+90402901 | MS.gene034190:CDS |
CGCTTTAAAACATATTGTGC+AGG | 0.447633 | 4.4:-90404913 | None:intergenic |
GCTTTAATAAATTCTAAAGC+TGG | 0.450264 | 4.4:+90403066 | MS.gene034190:CDS |
ATCTGAGAGTGGACAATTGA+CGG | 0.452529 | 4.4:+90402555 | MS.gene034190:CDS |
TGGTCTTTGCTCATGGCACA+TGG | 0.452802 | 4.4:+90404054 | MS.gene034190:CDS |
GGCCTACTTCGGACTTTAAG+TGG | 0.458978 | 4.4:+90404218 | MS.gene034190:CDS |
ATGTCGTATGTTTGAGAACC+GGG | 0.461344 | 4.4:+90404813 | MS.gene034190:CDS |
ACAAAATAAGAAATCGGATA+AGG | 0.469178 | 4.4:+90402750 | MS.gene034190:CDS |
GGGTTGTCACAGTCGACATT+GGG | 0.480993 | 4.4:+90404770 | MS.gene034190:CDS |
GAAGTGATGGGTCAAGGAGT+TGG | 0.484292 | 4.4:+90403111 | MS.gene034190:CDS |
CTCCTCATAATAGTATTTGA+AGG | 0.485089 | 4.4:-90404566 | None:intergenic |
TTACAACCAACCCTTTCCTC+TGG | 0.485330 | 4.4:-90402895 | None:intergenic |
TTTAATTATGCATATAACAC+TGG | 0.485542 | 4.4:+90402688 | MS.gene034190:CDS |
CTGTCTGTGAACCATCTGTT+GGG | 0.487793 | 4.4:+90405205 | MS.gene034190:CDS |
TCTAATGACAACTCGTCAAA+AGG | 0.488137 | 4.4:+90403179 | MS.gene034190:CDS |
CTCAAGTAGCACAAATGCTC+TGG | 0.489977 | 4.4:-90403006 | None:intergenic |
CAATTCACAAAATAAGAAAT+CGG | 0.490263 | 4.4:+90402744 | MS.gene034190:CDS |
TATGAGGAGGACACAACAAA+AGG | 0.490908 | 4.4:+90404580 | MS.gene034190:CDS |
ATGATTGTCAAAACCAAGAA+AGG | 0.491378 | 4.4:-90403855 | None:intergenic |
ATCAGATTTCGACTACAATT+GGG | 0.491708 | 4.4:+90404165 | MS.gene034190:CDS |
CGTCAAAAGGAGATGGTGGC+TGG | 0.492100 | 4.4:+90403192 | MS.gene034190:CDS |
ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 4.4:+90404404 | MS.gene034190:CDS |
GACCGCATAAGCTGACTGTT+GGG | 0.496307 | 4.4:-90404484 | None:intergenic |
GAGAACATCTTATGAAGTGA+TGG | 0.499875 | 4.4:+90403098 | MS.gene034190:CDS |
TGTCTTCTGCAGCATCAACT+TGG | 0.502977 | 4.4:-90403284 | None:intergenic |
GCTGTCTGTGAACCATCTGT+TGG | 0.504047 | 4.4:+90405204 | MS.gene034190:CDS |
AAATGCTCTGGTTTATGTAA+TGG | 0.504865 | 4.4:-90402994 | None:intergenic |
CTCATTCAAATCGTATGCAT+TGG | 0.507227 | 4.4:+90404251 | MS.gene034190:CDS |
ATCATAATCGACTTGATGAA+AGG | 0.507955 | 4.4:+90404749 | MS.gene034190:CDS |
TTTAAGTCCGAAAATCGAAA+AGG | 0.508080 | 4.4:-90403150 | None:intergenic |
GAGGGATAATCATGCTGAGT+TGG | 0.508852 | 4.4:+90404423 | MS.gene034190:CDS |
ATTGGTCTTCAGTTTGGGTG+AGG | 0.509410 | 4.4:+90404269 | MS.gene034190:CDS |
TGTCTATAAGATATATAAGT+GGG | 0.514682 | 4.4:+90402954 | MS.gene034190:CDS |
GATCTTCAAACCTTGGGGAA+AGG | 0.519004 | 4.4:-90404729 | None:intergenic |
TAAAGAATCGAACAAGTGAA+TGG | 0.519618 | 4.4:-90404372 | None:intergenic |
TAACAAAGAAGGTTTCAAGA+AGG | 0.525236 | 4.4:+90402795 | MS.gene034190:CDS |
TCATAATCGACTTGATGAAA+GGG | 0.526860 | 4.4:+90404750 | MS.gene034190:CDS |
CATAATAGTATTTGAAGGAA+AGG | 0.529686 | 4.4:-90404561 | None:intergenic |
AGGGTTGTCACAGTCGACAT+TGG | 0.538587 | 4.4:+90404769 | MS.gene034190:CDS |
AATCGAACAAGTGAATGGTC+TGG | 0.540971 | 4.4:-90404367 | None:intergenic |
ATGAGGAGGACACAACAAAA+GGG | 0.542065 | 4.4:+90404581 | MS.gene034190:CDS |
AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 4.4:+90402796 | MS.gene034190:CDS |
CATTTAGTGATAAAGAATCA+TGG | 0.546005 | 4.4:+90402620 | MS.gene034190:CDS |
ACTTCAACAACGCACCAGCC+TGG | 0.557139 | 4.4:-90404000 | None:intergenic |
CTGAAATCCACCATGAATGT+TGG | 0.557140 | 4.4:+90404970 | MS.gene034190:CDS |
AATGAAGCTCTCTCGAAACC+AGG | 0.565261 | 4.4:+90403246 | MS.gene034190:CDS |
TGAAAATTCAGTTATTGATG+CGG | 0.565546 | 4.4:+90402579 | MS.gene034190:CDS |
GTGATGGGTCAAGGAGTTGG+AGG | 0.568802 | 4.4:+90403114 | MS.gene034190:CDS |
TACACGTGTTTGCGCAGATG+CGG | 0.571672 | 4.4:+90405056 | MS.gene034190:CDS |
ATGTCTATAAGATATATAAG+TGG | 0.572287 | 4.4:+90402953 | MS.gene034190:CDS |
GGACCGCATAAGCTGACTGT+TGG | 0.579264 | 4.4:-90404485 | None:intergenic |
TTTGGTGCAGTCCCAACAGA+TGG | 0.581566 | 4.4:-90405216 | None:intergenic |
TGGTGTATACTTGTTTACTA+CGG | 0.585960 | 4.4:-90404506 | None:intergenic |
ATATTAACTTCATCTGAGAG+TGG | 0.588105 | 4.4:+90402544 | MS.gene034190:CDS |
TCTTATGAAGTGATGGGTCA+AGG | 0.589029 | 4.4:+90403105 | MS.gene034190:CDS |
TCAACGGTGTTCTTGAGGCA+GGG | 0.590097 | 4.4:+90405097 | MS.gene034190:CDS |
ACCATATACACAGACCAGGC+TGG | 0.590176 | 4.4:+90403986 | MS.gene034190:CDS |
ATTTCTCAACGGTGTTCTTG+AGG | 0.591378 | 4.4:+90405092 | MS.gene034190:CDS |
TTGAAGAAAACCTTTCCCCA+AGG | 0.594796 | 4.4:+90404719 | MS.gene034190:CDS |
TGAAGACTTAGAAGGCGTAA+CGG | 0.598405 | 4.4:-90405172 | None:intergenic |
GACAACTCGTCAAAAGGAGA+TGG | 0.599038 | 4.4:+90403185 | MS.gene034190:CDS |
AGAACATCTTATGAAGTGAT+GGG | 0.601988 | 4.4:+90403099 | MS.gene034190:CDS |
AACTCGTCAAAAGGAGATGG+TGG | 0.603142 | 4.4:+90403188 | MS.gene034190:CDS |
ACGTGTTTGCGCAGATGCGG+AGG | 0.605934 | 4.4:+90405059 | MS.gene034190:CDS |
ATCCCAACAGTCAGCTTATG+CGG | 0.606153 | 4.4:+90404482 | MS.gene034190:CDS |
CTTCAAATACTATTATGAGG+AGG | 0.607664 | 4.4:+90404567 | MS.gene034190:CDS |
TTGATATCGTTGCGCTTCAG+TGG | 0.611060 | 4.4:-90405004 | None:intergenic |
AGAACTGGACTGTCACATGT+TGG | 0.620791 | 4.4:-90402844 | None:intergenic |
AGCCACTTAAAGTCCGAAGT+AGG | 0.621799 | 4.4:-90404220 | None:intergenic |
GGGTCAAGGAGTTGGAGGCA+CGG | 0.621882 | 4.4:+90403119 | MS.gene034190:CDS |
ATTATGATCTTCAAACCTTG+GGG | 0.630358 | 4.4:-90404734 | None:intergenic |
GGTCTTTGCTCATGGCACAT+GGG | 0.639768 | 4.4:+90404055 | MS.gene034190:CDS |
TTTAGTGCCAACATTCATGG+TGG | 0.641441 | 4.4:-90404977 | None:intergenic |
CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 4.4:+90404405 | MS.gene034190:CDS |
GATTTCAGCTTATCGACAGA+CGG | 0.644926 | 4.4:-90404955 | None:intergenic |
TGAATAAATGAAAAGCAAGA+TGG | 0.655697 | 4.4:-90404526 | None:intergenic |
GCATCTGAAATATTTCTCAA+CGG | 0.661104 | 4.4:+90405081 | MS.gene034190:CDS |
CATGTCGACATAAGAAACCC+CGG | 0.663279 | 4.4:-90404831 | None:intergenic |
TCAAACCATATACACAGACC+AGG | 0.671057 | 4.4:+90403982 | MS.gene034190:CDS |
TGTCGTATGTTTGAGAACCG+GGG | 0.673760 | 4.4:+90404814 | MS.gene034190:CDS |
ATGTTGATAATGATAATGAG+AGG | 0.683310 | 4.4:+90404665 | MS.gene034190:CDS |
TGTTGATAATGATAATGAGA+GGG | 0.689129 | 4.4:+90404666 | MS.gene034190:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAACCATAATTATAGTTTAA+TGG | - | chr4.4:90405631-90405650 | None:intergenic | 15.0% |
!! | AAACCATTAAACTATAATTA+TGG | + | chr4.4:90405625-90405644 | MS.gene034190:intron | 15.0% |
!!! | TGTTTTTTATGTTATAAGTT+AGG | + | chr4.4:90405384-90405403 | MS.gene034190:intron | 15.0% |
!! | ATGTCTATAAGATATATAAG+TGG | + | chr4.4:90402953-90402972 | MS.gene034190:CDS | 20.0% |
!! | CAATTCACAAAATAAGAAAT+CGG | + | chr4.4:90402744-90402763 | MS.gene034190:CDS | 20.0% |
!! | TGTCTATAAGATATATAAGT+GGG | + | chr4.4:90402954-90402973 | MS.gene034190:CDS | 20.0% |
!! | TTTAATTATGCATATAACAC+TGG | + | chr4.4:90402688-90402707 | MS.gene034190:CDS | 20.0% |
!!! | AATTTAATGTTCTGGTTTAT+GGG | + | chr4.4:90403571-90403590 | MS.gene034190:intron | 20.0% |
!!! | ACGCATTTATTACTATATTT+TGG | + | chr4.4:90405555-90405574 | MS.gene034190:intron | 20.0% |
!!! | ATGATGAAAAACTGTTTTAA+TGG | + | chr4.4:90404193-90404212 | MS.gene034190:CDS | 20.0% |
!!! | CTATACATTTTCACATTTTT+TGG | + | chr4.4:90405527-90405546 | MS.gene034190:intron | 20.0% |
!!! | TGAATGTTTATATTGATTGA+AGG | + | chr4.4:90403543-90403562 | MS.gene034190:intron | 20.0% |
! | AAAACACCTTGAAAAACATT+CGG | - | chr4.4:90404031-90404050 | None:intergenic | 25.0% |
! | AAACCAAATTAACAGTCTAA+TGG | - | chr4.4:90405588-90405607 | None:intergenic | 25.0% |
! | AAACCATTAGACTGTTAATT+TGG | + | chr4.4:90405582-90405601 | MS.gene034190:intron | 25.0% |
! | AATTCTTGATTGTTATGCAT+TGG | + | chr4.4:90405482-90405501 | MS.gene034190:intron | 25.0% |
! | ACAAAATAAGAAATCGGATA+AGG | + | chr4.4:90402750-90402769 | MS.gene034190:CDS | 25.0% |
! | ACCGAACAAACAATAAATAT+CGG | + | chr4.4:90403388-90403407 | MS.gene034190:CDS | 25.0% |
! | AGTACAAAATACTAACCTAA+TGG | - | chr4.4:90403414-90403433 | None:intergenic | 25.0% |
! | CATAATAGTATTTGAAGGAA+AGG | - | chr4.4:90404564-90404583 | None:intergenic | 25.0% |
! | CATTTAGTGATAAAGAATCA+TGG | + | chr4.4:90402620-90402639 | MS.gene034190:CDS | 25.0% |
! | CTTTAGTCATTTCAACATTA+TGG | + | chr4.4:90404390-90404409 | MS.gene034190:CDS | 25.0% |
! | TGAAAATTCAGTTATTGATG+CGG | + | chr4.4:90402579-90402598 | MS.gene034190:CDS | 25.0% |
! | TGAAATTTGAATGAATGTTC+TGG | + | chr4.4:90403461-90403480 | MS.gene034190:intron | 25.0% |
! | TGAATAAATGAAAAGCAAGA+TGG | - | chr4.4:90404529-90404548 | None:intergenic | 25.0% |
! | TGATGCTTTAACTAAAAAAG+CGG | + | chr4.4:90405415-90405434 | MS.gene034190:intron | 25.0% |
! | TTCCTTCAAATACTATTATG+AGG | + | chr4.4:90404564-90404583 | MS.gene034190:CDS | 25.0% |
! | TTTCGATGAGTTAACTAATT+TGG | + | chr4.4:90404123-90404142 | MS.gene034190:CDS | 25.0% |
!! | AGGTTTAGAATTTAATGTTC+TGG | + | chr4.4:90403563-90403582 | MS.gene034190:intron | 25.0% |
!! | TGTTGTATTTTGTTCTGATT+TGG | + | chr4.4:90403819-90403838 | MS.gene034190:intron | 25.0% |
!! | TTGGTTTGAATATTATCTTC+TGG | + | chr4.4:90405501-90405520 | MS.gene034190:intron | 25.0% |
!! | TTTTCAATTACTGAGTTAAG+TGG | + | chr4.4:90405659-90405678 | MS.gene034190:intron | 25.0% |
!!! | ATGTTGATAATGATAATGAG+AGG | + | chr4.4:90404665-90404684 | MS.gene034190:CDS | 25.0% |
!!! | CTTATTTTGTGAATTGTTCT+TGG | - | chr4.4:90402740-90402759 | None:intergenic | 25.0% |
!!! | GAATTTAATGTTCTGGTTTA+TGG | + | chr4.4:90403570-90403589 | MS.gene034190:intron | 25.0% |
!!! | GCTTTAATAAATTCTAAAGC+TGG | + | chr4.4:90403066-90403085 | MS.gene034190:CDS | 25.0% |
!!! | TGAAAAACTGTTTTAATGGA+AGG | + | chr4.4:90404197-90404216 | MS.gene034190:CDS | 25.0% |
!!! | TGTTGATAATGATAATGAGA+GGG | + | chr4.4:90404666-90404685 | MS.gene034190:CDS | 25.0% |
AAACACATATGATCTTTCCA+TGG | - | chr4.4:90403634-90403653 | None:intergenic | 30.0% | |
AACAAAGAAGGTTTCAAGAA+GGG | + | chr4.4:90402796-90402815 | MS.gene034190:CDS | 30.0% | |
AACAATAAATATCGGCCATT+AGG | + | chr4.4:90403396-90403415 | MS.gene034190:CDS | 30.0% | |
AAGAAAGACCAAATCCAATT+AGG | + | chr4.4:90405244-90405263 | MS.gene034190:CDS | 30.0% | |
AATCAGATTTCGACTACAAT+TGG | + | chr4.4:90404164-90404183 | MS.gene034190:CDS | 30.0% | |
AGAACATCTTATGAAGTGAT+GGG | + | chr4.4:90403099-90403118 | MS.gene034190:CDS | 30.0% | |
ATATTAACTTCATCTGAGAG+TGG | + | chr4.4:90402544-90402563 | MS.gene034190:CDS | 30.0% | |
ATCAGATTTCGACTACAATT+GGG | + | chr4.4:90404165-90404184 | MS.gene034190:CDS | 30.0% | |
ATGATTGTCAAAACCAAGAA+AGG | - | chr4.4:90403858-90403877 | None:intergenic | 30.0% | |
ATTATGATCTTCAAACCTTG+GGG | - | chr4.4:90404737-90404756 | None:intergenic | 30.0% | |
CAACAAGATTATGCTCTATT+TGG | + | chr4.4:90403339-90403358 | MS.gene034190:CDS | 30.0% | |
CGTTATGTTTGTAACAAAGA+AGG | + | chr4.4:90402784-90402803 | MS.gene034190:CDS | 30.0% | |
CTCCTCATAATAGTATTTGA+AGG | - | chr4.4:90404569-90404588 | None:intergenic | 30.0% | |
CTGGTATATGTGTGTTAATT+TGG | + | chr4.4:90403500-90403519 | MS.gene034190:intron | 30.0% | |
CTTCAAATACTATTATGAGG+AGG | + | chr4.4:90404567-90404586 | MS.gene034190:CDS | 30.0% | |
GAGAATGCAAAGAAAAATCT+CGG | + | chr4.4:90404079-90404098 | MS.gene034190:CDS | 30.0% | |
GATTATGATCTTCAAACCTT+GGG | - | chr4.4:90404738-90404757 | None:intergenic | 30.0% | |
GCCGATATTTATTGTTTGTT+CGG | - | chr4.4:90403392-90403411 | None:intergenic | 30.0% | |
TAAAGAAAAACCAGAGGAAA+GGG | + | chr4.4:90402885-90402904 | MS.gene034190:CDS | 30.0% | |
TAAAGAATCATGGAAGTCTT+TGG | + | chr4.4:90402630-90402649 | MS.gene034190:CDS | 30.0% | |
TAAAGAATCGAACAAGTGAA+TGG | - | chr4.4:90404375-90404394 | None:intergenic | 30.0% | |
TAACAAAGAAGGTTTCAAGA+AGG | + | chr4.4:90402795-90402814 | MS.gene034190:CDS | 30.0% | |
TGGATATCATAGTAAAAACC+TGG | - | chr4.4:90403267-90403286 | None:intergenic | 30.0% | |
TGGTGTATACTTGTTTACTA+CGG | - | chr4.4:90404509-90404528 | None:intergenic | 30.0% | |
TTCTTTGACCTAATTGGATT+TGG | - | chr4.4:90405255-90405274 | None:intergenic | 30.0% | |
TTTAAGTCCGAAAATCGAAA+AGG | - | chr4.4:90403153-90403172 | None:intergenic | 30.0% | |
TTTCTATTTACACAGCACAA+TGG | + | chr4.4:90403778-90403797 | MS.gene034190:intron | 30.0% | |
! | AAATGCTCTGGTTTATGTAA+TGG | - | chr4.4:90402997-90403016 | None:intergenic | 30.0% |
! | AGCTGGAATATATTTGAAGT+TGG | + | chr4.4:90402918-90402937 | MS.gene034190:CDS | 30.0% |
! | CAAAGTTTTCACAATTGAGA+AGG | + | chr4.4:90404624-90404643 | MS.gene034190:CDS | 30.0% |
! | GAATCTTCCTTTTCGATTTT+CGG | + | chr4.4:90403143-90403162 | MS.gene034190:CDS | 30.0% |
! | GCATCTGAAATATTTCTCAA+CGG | + | chr4.4:90405081-90405100 | MS.gene034190:CDS | 30.0% |
! | TATGGTTTGAGGTTTCTTAT+TGG | - | chr4.4:90403972-90403991 | None:intergenic | 30.0% |
! | TCAATTCCGAATGTTTTTCA+AGG | + | chr4.4:90404022-90404041 | MS.gene034190:CDS | 30.0% |
! | TCAGTTTTCAATTCAATGAG+TGG | - | chr4.4:90405803-90405822 | None:intergenic | 30.0% |
! | TGAGGCTTTAACAAATTAAG+CGG | + | chr4.4:90405353-90405372 | MS.gene034190:intron | 30.0% |
! | TTTGGTCTTTCTTTGAACTT+TGG | - | chr4.4:90405237-90405256 | None:intergenic | 30.0% |
!! | ACATGTTTTCAAGATTTTGG+AGG | + | chr4.4:90404849-90404868 | MS.gene034190:CDS | 30.0% |
!! | ATCATAATCGACTTGATGAA+AGG | + | chr4.4:90404749-90404768 | MS.gene034190:CDS | 30.0% |
!! | ATGTTCTGGTTTAGAATTGA+AGG | + | chr4.4:90403475-90403494 | MS.gene034190:intron | 30.0% |
!! | GAGGAGTTTCTTATTTCTAA+AGG | + | chr4.4:90405129-90405148 | MS.gene034190:CDS | 30.0% |
!! | TCATAATCGACTTGATGAAA+GGG | + | chr4.4:90404750-90404769 | MS.gene034190:CDS | 30.0% |
!! | TCGACATGTTTTCAAGATTT+TGG | + | chr4.4:90404846-90404865 | MS.gene034190:CDS | 30.0% |
!!! | AAGACATAGCCAGTATTTTT+TGG | + | chr4.4:90403301-90403320 | MS.gene034190:CDS | 30.0% |
!!! | AGACATAGCCAGTATTTTTT+GGG | + | chr4.4:90403302-90403321 | MS.gene034190:CDS | 30.0% |
!!! | CTGCACAATATGTTTTAAAG+CGG | + | chr4.4:90404914-90404933 | MS.gene034190:CDS | 30.0% |
!!! | GTTTTTCAAGGTGTTTTTCA+TGG | + | chr4.4:90404034-90404053 | MS.gene034190:CDS | 30.0% |
ACATTATGGTTCAGAGAATG+AGG | + | chr4.4:90404404-90404423 | MS.gene034190:CDS | 35.0% | |
ATAACACTGGATTCTCTGTT+AGG | + | chr4.4:90402701-90402720 | MS.gene034190:CDS | 35.0% | |
CATAAATTCCAAGGCAAGAT+AGG | - | chr4.4:90403601-90403620 | None:intergenic | 35.0% | |
CATTATGGTTCAGAGAATGA+GGG | + | chr4.4:90404405-90404424 | MS.gene034190:CDS | 35.0% | |
CGAGAAGTAAATGAAGTTCA+AGG | + | chr4.4:90403036-90403055 | MS.gene034190:CDS | 35.0% | |
CGATTATGATCTTCAAACCT+TGG | - | chr4.4:90404739-90404758 | None:intergenic | 35.0% | |
CTAAAGAAAAACCAGAGGAA+AGG | + | chr4.4:90402884-90402903 | MS.gene034190:CDS | 35.0% | |
CTCATTCAAATCGTATGCAT+TGG | + | chr4.4:90404251-90404270 | MS.gene034190:CDS | 35.0% | |
GAAAGCTAAAGAAAAACCAG+AGG | + | chr4.4:90402879-90402898 | MS.gene034190:CDS | 35.0% | |
GAAGCAAAAGAAAGATGATG+AGG | + | chr4.4:90405335-90405354 | MS.gene034190:intron | 35.0% | |
GACAGAAATTCCTTATAGCT+CGG | + | chr4.4:90405310-90405329 | MS.gene034190:intron | 35.0% | |
GAGAACATCTTATGAAGTGA+TGG | + | chr4.4:90403098-90403117 | MS.gene034190:CDS | 35.0% | |
GTCTGCTTAATCCTAAAAAC+AGG | + | chr4.4:90402821-90402840 | MS.gene034190:CDS | 35.0% | |
TCTAATGACAACTCGTCAAA+AGG | + | chr4.4:90403179-90403198 | MS.gene034190:CDS | 35.0% | |
TGTACAGAGCATAAATTCCA+AGG | - | chr4.4:90403610-90403629 | None:intergenic | 35.0% | |
TTCTCATACTCAACAAGAAC+TGG | - | chr4.4:90402862-90402881 | None:intergenic | 35.0% | |
! | CATCGTAAGAGTGTGTTATT+TGG | + | chr4.4:90403875-90403894 | MS.gene034190:CDS | 35.0% |
! | GAGGCTTTAACAAATTAAGC+GGG | + | chr4.4:90405354-90405373 | MS.gene034190:intron | 35.0% |
! | GGTTTCGAATGTTGATGTTT+TGG | + | chr4.4:90404687-90404706 | MS.gene034190:CDS | 35.0% |
! | TCTTTCAATGCTTTTCTTCG+TGG | + | chr4.4:90404334-90404353 | MS.gene034190:CDS | 35.0% |
! | TGGTTTAGAATTGAAGGTTC+TGG | + | chr4.4:90403481-90403500 | MS.gene034190:intron | 35.0% |
! | TTTTAATGGAAGGCCTACTT+CGG | + | chr4.4:90404207-90404226 | MS.gene034190:CDS | 35.0% |
! | TTTTTCATGGTCTTTGCTCA+TGG | + | chr4.4:90404047-90404066 | MS.gene034190:CDS | 35.0% |
!! | ACTGCTTTTGAAGACTTAGA+AGG | - | chr4.4:90405183-90405202 | None:intergenic | 35.0% |
!! | CGCTTTAAAACATATTGTGC+AGG | - | chr4.4:90404916-90404935 | None:intergenic | 35.0% |
!! | TATGCATTGGTCTTCAGTTT+GGG | + | chr4.4:90404264-90404283 | MS.gene034190:CDS | 35.0% |
!! | TTCAAGATTTTGGAGGTCTT+AGG | + | chr4.4:90404856-90404875 | MS.gene034190:CDS | 35.0% |
!!! | AGACATCAGCTACTTTTGAT+TGG | + | chr4.4:90403918-90403937 | MS.gene034190:CDS | 35.0% |
!!! | CACAATATGTTTTAAAGCGG+TGG | + | chr4.4:90404917-90404936 | MS.gene034190:CDS | 35.0% |
AATCGAACAAGTGAATGGTC+TGG | - | chr4.4:90404370-90404389 | None:intergenic | 40.0% | |
ACCTATGATCTTTGCATAGC+TGG | - | chr4.4:90403728-90403747 | None:intergenic | 40.0% | |
AGTCGCTTCTTTGACCTAAT+TGG | - | chr4.4:90405261-90405280 | None:intergenic | 40.0% | |
ATCTGAGAGTGGACAATTGA+CGG | + | chr4.4:90402555-90402574 | MS.gene034190:CDS | 40.0% | |
ATGAGGAGGACACAACAAAA+GGG | + | chr4.4:90404581-90404600 | MS.gene034190:CDS | 40.0% | |
ATGTCGTATGTTTGAGAACC+GGG | + | chr4.4:90404813-90404832 | MS.gene034190:CDS | 40.0% | |
ATTTATGCTCTGTACAGCCA+TGG | + | chr4.4:90403614-90403633 | MS.gene034190:intron | 40.0% | |
ATTTCTCAACGGTGTTCTTG+AGG | + | chr4.4:90405092-90405111 | MS.gene034190:CDS | 40.0% | |
CATGTCGTATGTTTGAGAAC+CGG | + | chr4.4:90404812-90404831 | MS.gene034190:CDS | 40.0% | |
CTGAAATCCACCATGAATGT+TGG | + | chr4.4:90404970-90404989 | MS.gene034190:CDS | 40.0% | |
GATTTCAGCTTATCGACAGA+CGG | - | chr4.4:90404958-90404977 | None:intergenic | 40.0% | |
GTCAATTCTGATGTAATGCG+CGG | + | chr4.4:90405746-90405765 | MS.gene034190:intron | 40.0% | |
GTCTTTAGTGCCAACATTCA+TGG | - | chr4.4:90404983-90405002 | None:intergenic | 40.0% | |
TATGAGGAGGACACAACAAA+AGG | + | chr4.4:90404580-90404599 | MS.gene034190:CDS | 40.0% | |
TCAAACCATATACACAGACC+AGG | + | chr4.4:90403982-90404001 | MS.gene034190:CDS | 40.0% | |
TCCAGCTATGCAAAGATCAT+AGG | + | chr4.4:90403724-90403743 | MS.gene034190:intron | 40.0% | |
TCCATCTGCCCAAAAAATAC+TGG | - | chr4.4:90403313-90403332 | None:intergenic | 40.0% | |
TGGTCTGTGTATATGGTTTG+AGG | - | chr4.4:90403983-90404002 | None:intergenic | 40.0% | |
TTCATTTCAGCTGCCTTTCT+TGG | + | chr4.4:90403842-90403861 | MS.gene034190:intron | 40.0% | |
TTGAAGAAAACCTTTCCCCA+AGG | + | chr4.4:90404719-90404738 | MS.gene034190:CDS | 40.0% | |
TTTAGTGCCAACATTCATGG+TGG | - | chr4.4:90404980-90404999 | None:intergenic | 40.0% | |
TTTGCTTCTTCCGAGCTATA+AGG | - | chr4.4:90405323-90405342 | None:intergenic | 40.0% | |
! | TCATGCTGAGTTGGACTTTA+AGG | + | chr4.4:90404432-90404451 | MS.gene034190:CDS | 40.0% |
! | TGAAGACTTAGAAGGCGTAA+CGG | - | chr4.4:90405175-90405194 | None:intergenic | 40.0% |
!! | AAGATTTTGGAGGTCTTAGG+TGG | + | chr4.4:90404859-90404878 | MS.gene034190:CDS | 40.0% |
!! | GTATGCATTGGTCTTCAGTT+TGG | + | chr4.4:90404263-90404282 | MS.gene034190:CDS | 40.0% |
!! | TCACATGTTGGCCTGTTTTT+AGG | - | chr4.4:90402835-90402854 | None:intergenic | 40.0% |
!! | TCTTATGAAGTGATGGGTCA+AGG | + | chr4.4:90403105-90403124 | MS.gene034190:CDS | 40.0% |
AACTCGTCAAAAGGAGATGG+TGG | + | chr4.4:90403188-90403207 | MS.gene034190:CDS | 45.0% | |
AATGAAGCTCTCTCGAAACC+AGG | + | chr4.4:90403246-90403265 | MS.gene034190:CDS | 45.0% | |
AGAACTGGACTGTCACATGT+TGG | - | chr4.4:90402847-90402866 | None:intergenic | 45.0% | |
AGCCACTTAAAGTCCGAAGT+AGG | - | chr4.4:90404223-90404242 | None:intergenic | 45.0% | |
ATCCCAACAGTCAGCTTATG+CGG | + | chr4.4:90404482-90404501 | MS.gene034190:CDS | 45.0% | |
CATGTCGACATAAGAAACCC+CGG | - | chr4.4:90404834-90404853 | None:intergenic | 45.0% | |
CTCAAGTAGCACAAATGCTC+TGG | - | chr4.4:90403009-90403028 | None:intergenic | 45.0% | |
CTGTCTGTGAACCATCTGTT+GGG | + | chr4.4:90405205-90405224 | MS.gene034190:CDS | 45.0% | |
GAAAAACCAGAGGAAAGGGT+TGG | + | chr4.4:90402889-90402908 | MS.gene034190:CDS | 45.0% | |
GACAACTCGTCAAAAGGAGA+TGG | + | chr4.4:90403185-90403204 | MS.gene034190:CDS | 45.0% | |
GAGGGATAATCATGCTGAGT+TGG | + | chr4.4:90404423-90404442 | MS.gene034190:CDS | 45.0% | |
GATCTTCAAACCTTGGGGAA+AGG | - | chr4.4:90404732-90404751 | None:intergenic | 45.0% | |
TGTCGTATGTTTGAGAACCG+GGG | + | chr4.4:90404814-90404833 | MS.gene034190:CDS | 45.0% | |
TGTCTTCTGCAGCATCAACT+TGG | - | chr4.4:90403287-90403306 | None:intergenic | 45.0% | |
TGTTCTTGAGGCAGGGAAAA+AGG | + | chr4.4:90405104-90405123 | MS.gene034190:CDS | 45.0% | |
TTACAACCAACCCTTTCCTC+TGG | - | chr4.4:90402898-90402917 | None:intergenic | 45.0% | |
TTGATATCGTTGCGCTTCAG+TGG | - | chr4.4:90405007-90405026 | None:intergenic | 45.0% | |
! | GTGAGGTCACATTTTACAGC+TGG | + | chr4.4:90404286-90404305 | MS.gene034190:CDS | 45.0% |
!! | ATTGGTCTTCAGTTTGGGTG+AGG | + | chr4.4:90404269-90404288 | MS.gene034190:CDS | 45.0% |
!! | GAAAGGGTTGGTTGTAAAGC+TGG | + | chr4.4:90402901-90402920 | MS.gene034190:CDS | 45.0% |
!!! | GCCAGTATTTTTTGGGCAGA+TGG | + | chr4.4:90403309-90403328 | MS.gene034190:CDS | 45.0% |
ACCAGCCTGGTCTGTGTATA+TGG | - | chr4.4:90403990-90404009 | None:intergenic | 50.0% | |
ACCATATACACAGACCAGGC+TGG | + | chr4.4:90403986-90404005 | MS.gene034190:CDS | 50.0% | |
AGGGTTGTCACAGTCGACAT+TGG | + | chr4.4:90404769-90404788 | MS.gene034190:CDS | 50.0% | |
GACCGCATAAGCTGACTGTT+GGG | - | chr4.4:90404487-90404506 | None:intergenic | 50.0% | |
GCTGTCTGTGAACCATCTGT+TGG | + | chr4.4:90405204-90405223 | MS.gene034190:CDS | 50.0% | |
GGCCTACTTCGGACTTTAAG+TGG | + | chr4.4:90404218-90404237 | MS.gene034190:CDS | 50.0% | |
GGGTTGTCACAGTCGACATT+GGG | + | chr4.4:90404770-90404789 | MS.gene034190:CDS | 50.0% | |
GGTCTTTGCTCATGGCACAT+GGG | + | chr4.4:90404055-90404074 | MS.gene034190:CDS | 50.0% | |
TACACGTGTTTGCGCAGATG+CGG | + | chr4.4:90405056-90405075 | MS.gene034190:CDS | 50.0% | |
TCAACGGTGTTCTTGAGGCA+GGG | + | chr4.4:90405097-90405116 | MS.gene034190:CDS | 50.0% | |
TGGGTGATCCTATCTTGCCT+TGG | + | chr4.4:90403590-90403609 | MS.gene034190:intron | 50.0% | |
TGGTCTTTGCTCATGGCACA+TGG | + | chr4.4:90404054-90404073 | MS.gene034190:CDS | 50.0% | |
! | TTTGGTGCAGTCCCAACAGA+TGG | - | chr4.4:90405219-90405238 | None:intergenic | 50.0% |
!! | GAAGTGATGGGTCAAGGAGT+TGG | + | chr4.4:90403111-90403130 | MS.gene034190:CDS | 50.0% |
ACTTCAACAACGCACCAGCC+TGG | - | chr4.4:90404003-90404022 | None:intergenic | 55.0% | |
CTCAACGGTGTTCTTGAGGC+AGG | + | chr4.4:90405096-90405115 | MS.gene034190:CDS | 55.0% | |
GGACCGCATAAGCTGACTGT+TGG | - | chr4.4:90404488-90404507 | None:intergenic | 55.0% | |
TGAGGCAGGGAAAAAGGCAG+AGG | + | chr4.4:90405110-90405129 | MS.gene034190:CDS | 55.0% | |
! | CGTCAAAAGGAGATGGTGGC+TGG | + | chr4.4:90403192-90403211 | MS.gene034190:CDS | 55.0% |
!! | GTGATGGGTCAAGGAGTTGG+AGG | + | chr4.4:90403114-90403133 | MS.gene034190:CDS | 55.0% |
ACGTGTTTGCGCAGATGCGG+AGG | + | chr4.4:90405059-90405078 | MS.gene034190:CDS | 60.0% | |
GGGTCAAGGAGTTGGAGGCA+CGG | + | chr4.4:90403119-90403138 | MS.gene034190:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.4 | gene | 90402535 | 90405889 | 90402535 | ID=MS.gene034190 |
chr4.4 | mRNA | 90402535 | 90405889 | 90402535 | ID=MS.gene034190.t1;Parent=MS.gene034190 |
chr4.4 | exon | 90402535 | 90403417 | 90402535 | ID=MS.gene034190.t1.exon1;Parent=MS.gene034190.t1 |
chr4.4 | CDS | 90402535 | 90403417 | 90402535 | ID=cds.MS.gene034190.t1;Parent=MS.gene034190.t1 |
chr4.4 | exon | 90403852 | 90405285 | 90403852 | ID=MS.gene034190.t1.exon2;Parent=MS.gene034190.t1 |
chr4.4 | CDS | 90403852 | 90405285 | 90403852 | ID=cds.MS.gene034190.t1;Parent=MS.gene034190.t1 |
chr4.4 | exon | 90405870 | 90405889 | 90405870 | ID=MS.gene034190.t1.exon3;Parent=MS.gene034190.t1 |
chr4.4 | CDS | 90405870 | 90405889 | 90405870 | ID=cds.MS.gene034190.t1;Parent=MS.gene034190.t1 |
Gene Sequence |
Protein sequence |