AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene034200

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene034200.t1 MTR_4g007490 95.263 380 11 1 1 380 1 373 0.0 733
MS.gene034200.t1 MTR_3g450500 67.454 381 117 5 1 380 1 375 5.28e-177 497
MS.gene034200.t1 MTR_2g019840 37.429 350 205 6 32 378 34 372 8.07e-68 219
MS.gene034200.t1 MTR_2g019810 36.885 366 219 5 14 378 6 360 5.33e-67 216
MS.gene034200.t1 MTR_4g119550 34.535 333 210 5 45 375 52 378 4.94e-57 191
MS.gene034200.t1 MTR_4g120380 31.909 351 225 5 27 374 30 369 1.26e-56 189
MS.gene034200.t1 MTR_4g120380 32.229 332 211 5 27 355 30 350 1.77e-53 182
MS.gene034200.t1 MTR_4g119580 32.877 365 225 6 22 379 23 374 9.99e-53 179
MS.gene034200.t1 MTR_2g436460 33.526 346 210 6 36 374 41 373 8.67e-52 177
MS.gene034200.t1 MTR_2g437260 29.552 335 227 3 43 374 35 363 1.36e-51 177
MS.gene034200.t1 MTR_2g437030 32.869 359 227 7 22 375 105 454 1.71e-51 179
MS.gene034200.t1 MTR_2g437040 32.853 347 224 5 32 375 28 368 1.24e-50 174
MS.gene034200.t1 MTR_2g437130 31.746 378 244 8 1 375 3 369 1.63e-49 171
MS.gene034200.t1 MTR_2g436400 30.663 362 241 6 17 375 21 375 4.11e-48 167
MS.gene034200.t1 MTR_2g437160 31.339 351 229 8 29 375 51 393 8.06e-48 167
MS.gene034200.t1 MTR_2g437150 31.405 363 237 7 22 375 29 388 1.29e-47 167
MS.gene034200.t1 MTR_2g437080 30.541 370 246 6 11 375 5 368 2.75e-47 165
MS.gene034200.t1 MTR_2g437020 32.578 353 218 9 13 356 9 350 2.97e-46 162
MS.gene034200.t1 MTR_2g437240 29.067 375 223 5 39 375 27 396 8.85e-46 162
MS.gene034200.t1 MTR_2g436440 30.141 355 236 6 24 375 29 374 3.76e-45 160
MS.gene034200.t1 MTR_2g437060 30.769 390 233 9 10 375 7 383 5.16e-45 159
MS.gene034200.t1 MTR_2g437120 29.805 359 241 6 22 375 29 381 3.59e-44 158
MS.gene034200.t1 MTR_2g437100 29.288 379 252 8 15 380 23 398 7.47e-44 157
MS.gene034200.t1 MTR_2g437170 30.028 363 242 7 22 375 29 388 1.05e-43 156
MS.gene034200.t1 MTR_2g437960 29.674 337 229 6 46 378 55 387 2.48e-43 155
MS.gene034200.t1 MTR_2g437960 29.674 337 229 6 46 378 55 387 3.96e-43 155
MS.gene034200.t1 MTR_2g437200 28.947 380 225 8 35 375 23 396 6.74e-43 154
MS.gene034200.t1 MTR_2g438010 29.620 368 247 8 15 374 37 400 5.48e-42 152
MS.gene034200.t1 MTR_2g076320 30.707 368 243 8 15 374 17 380 5.87e-42 152
MS.gene034200.t1 MTR_2g437990 29.973 367 246 6 15 374 17 379 9.52e-42 152
MS.gene034200.t1 MTR_2g437180 30.120 332 224 5 46 374 51 377 1.68e-41 150
MS.gene034200.t1 MTR_2g438020 27.596 366 226 3 46 375 73 435 5.12e-39 145
MS.gene034200.t1 MTR_8g081000 24.927 341 236 3 36 375 64 385 9.37e-31 121
MS.gene034200.t1 MTR_8g081000 24.927 341 236 3 36 375 64 385 9.61e-31 121
MS.gene034200.t1 MTR_8g081000 24.927 341 236 3 36 375 64 385 1.36e-30 121
MS.gene034200.t1 MTR_8g080990 27.485 342 238 5 44 380 41 377 6.10e-29 116
MS.gene034200.t1 MTR_2g437940 26.866 335 207 7 46 375 51 352 1.64e-28 114
MS.gene034200.t1 MTR_4g119570 28.205 234 129 3 138 371 31 225 1.10e-23 98.6
MS.gene034200.t1 MTR_2g437090 29.605 152 107 0 224 375 5 156 6.13e-21 89.4
MS.gene034200.t1 MTR_2g437160 28.767 219 135 6 177 375 85 302 1.97e-20 91.3
MS.gene034200.t1 MTR_2g436370 36.571 175 104 5 27 198 30 200 1.90e-19 86.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene034200.t1 AT5G07900 40.882 340 198 3 37 374 61 399 9.00e-87 268
MS.gene034200.t1 AT1G21150 33.962 371 238 4 10 374 17 386 2.14e-62 205
MS.gene034200.t1 AT1G21150 33.962 371 238 4 10 374 81 450 1.01e-61 205
MS.gene034200.t1 AT1G21150 34.286 350 221 4 33 374 2 350 1.62e-60 199
MS.gene034200.t1 AT1G62120 30.179 391 226 7 14 360 18 405 5.07e-43 155
MS.gene034200.t1 AT1G61970 28.650 363 207 7 41 361 48 400 1.04e-39 146
MS.gene034200.t1 AT1G61970 28.650 363 207 7 41 361 48 400 1.04e-39 146
MS.gene034200.t1 AT1G61970 28.650 363 207 7 41 361 48 400 1.04e-39 146
MS.gene034200.t1 AT1G61970 28.650 363 207 7 41 361 48 400 1.04e-39 146
MS.gene034200.t1 AT1G61970 28.650 363 207 7 41 361 48 400 1.04e-39 146
MS.gene034200.t1 AT1G61970 28.650 363 207 7 41 361 48 400 1.04e-39 146
MS.gene034200.t1 AT1G61970 28.650 363 207 7 41 361 48 400 1.04e-39 146
MS.gene034200.t1 AT1G61980 29.412 357 210 5 41 360 48 399 1.43e-39 145
MS.gene034200.t1 AT1G61980 29.412 357 210 5 41 360 48 399 1.43e-39 145
MS.gene034200.t1 AT1G61980 29.412 357 210 5 41 360 48 399 1.43e-39 145
MS.gene034200.t1 AT1G61990 28.052 385 226 6 27 371 32 405 2.29e-39 145
MS.gene034200.t1 AT1G61990 28.052 385 226 6 27 371 32 405 2.29e-39 145
MS.gene034200.t1 AT3G46950 32.226 301 188 6 14 309 18 307 1.26e-37 141
MS.gene034200.t1 AT5G23930 29.120 443 222 10 7 370 12 441 5.74e-36 137
MS.gene034200.t1 AT1G62010 29.282 362 192 9 42 361 45 384 5.80e-36 136
MS.gene034200.t1 AT1G62150 31.900 279 175 5 35 307 48 317 2.55e-33 129
MS.gene034200.t1 AT1G62085 32.248 307 185 8 14 307 18 314 2.70e-32 126
MS.gene034200.t1 AT1G62085 32.248 307 185 8 14 307 18 314 2.70e-32 126
MS.gene034200.t1 AT1G61960 33.577 274 173 6 27 296 32 300 1.51e-31 124
MS.gene034200.t1 AT1G62110 31.633 294 174 7 27 307 32 311 3.09e-31 124
MS.gene034200.t1 AT5G64950 29.221 308 207 5 77 375 71 376 1.15e-30 121
MS.gene034200.t1 AT1G56380 23.161 367 231 11 39 361 10 369 5.87e-19 88.2
MS.gene034200.t1 AT1G56380 23.161 367 231 11 39 361 21 380 5.91e-19 88.2
MS.gene034200.t1 AT1G62490 27.341 267 150 7 30 296 83 305 4.63e-15 75.9

Find 66 sgRNAs with CRISPR-Local

Find 91 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAACCTTGTTGAAAGTTTA+AGG 0.085452 4.4:+90497961 None:intergenic
GAAAGATTTGCCATTGTTAT+TGG 0.156741 4.4:-90497055 MS.gene034200:CDS
CTTGTCACCAATCAAGATTT+TGG 0.169173 4.4:+90497755 None:intergenic
TAAGTATGGACAAAGAAATT+TGG 0.197332 4.4:-90497407 MS.gene034200:CDS
TATGAAAACAATGGACTTCT+TGG 0.234883 4.4:-90497280 MS.gene034200:CDS
GAATGCTACACAAGGAAAAT+TGG 0.258902 4.4:+90497527 None:intergenic
CCTAGTTTGCGATGATAAAA+AGG 0.296431 4.4:-90497676 MS.gene034200:CDS
TTCCTCACTTGTCATAATAA+AGG 0.304109 4.4:+90497110 None:intergenic
AAAGAACAGTAGTTGAATAA+AGG 0.305931 4.4:+90498102 None:intergenic
AATGGCAAATCTTTCTGAAA+TGG 0.311445 4.4:+90497063 None:intergenic
AAAAGCTGAATAACAGCATT+TGG 0.312391 4.4:+90497918 None:intergenic
ATAACAGCATTTGGGCCATT+AGG 0.321633 4.4:+90497927 None:intergenic
ACAGCAGAGAAAAGTGAAAA+AGG 0.329234 4.4:+90498065 None:intergenic
AAGTATGGACAAAGAAATTT+GGG 0.343578 4.4:-90497406 MS.gene034200:CDS
GATTTCCCCAAAATCTTGAT+TGG 0.348520 4.4:-90497762 MS.gene034200:CDS
TCAAAGTTCTATTTCCAGTT+TGG 0.350471 4.4:-90497553 MS.gene034200:CDS
TAACAGCATTTGGGCCATTA+GGG 0.351944 4.4:+90497928 None:intergenic
GGGCATGTAGCAATGTCTTC+TGG 0.354285 4.4:+90497237 None:intergenic
GTTAATTCAGTAAAAGAAAT+GGG 0.366519 4.4:-90497477 MS.gene034200:CDS
TCACATACTCAGGATACTTT+AGG 0.366731 4.4:+90497322 None:intergenic
ATGGCAAATCTTTCTGAAAT+GGG 0.369413 4.4:+90497064 None:intergenic
CAACCTTGTTGAAAGTTTAA+GGG 0.375048 4.4:+90497962 None:intergenic
ATCTTGATAACAGCACATTT+AGG 0.385800 4.4:+90497177 None:intergenic
AGGAAAATTGGATACCAAAC+TGG 0.392789 4.4:+90497539 None:intergenic
TGTTAATTCAGTAAAAGAAA+TGG 0.415470 4.4:-90497478 MS.gene034200:CDS
AAGTGTCTTCTCCAAGTTGC+GGG 0.424163 4.4:+90497203 None:intergenic
AAGAACAGTAGTTGAATAAA+GGG 0.427774 4.4:+90498103 None:intergenic
TCCAACACAAATCAACATAA+AGG 0.430035 4.4:-90498041 MS.gene034200:CDS
ACAACCCACATGAGTTTATG+AGG 0.430149 4.4:+90497997 None:intergenic
TAGCTTTGAGGCGTGGATCA+TGG 0.435733 4.4:-90497647 MS.gene034200:CDS
GATTCGAGTAATTGTAAGTA+TGG 0.436929 4.4:-90497421 MS.gene034200:CDS
TTCCTCAAAACCTCAATGTT+CGG 0.445259 4.4:+90497588 None:intergenic
AAAAGGTAGTTCTAGCTTTG+AGG 0.445792 4.4:-90497659 MS.gene034200:CDS
CTCAACAAATCTAGAATGCT+TGG 0.457146 4.4:+90497503 None:intergenic
ACCTTTATGTTGATTTGTGT+TGG 0.460913 4.4:+90498040 None:intergenic
AAGTTGCGGGTCAGAATCCC+AGG 0.461038 4.4:+90497216 None:intergenic
AAAGCTGAATAACAGCATTT+GGG 0.472696 4.4:+90497919 None:intergenic
TCAAGAGGTTTAATAAAGAG+TGG 0.472917 4.4:-90497147 MS.gene034200:CDS
GAAGACATTGCTACATGCCC+TGG 0.473610 4.4:-90497234 MS.gene034200:CDS
CAAAAGGGTGTTTCTTAACA+AGG 0.481935 4.4:+90497859 None:intergenic
TTGCAACTCATAAACCCTAA+TGG 0.484587 4.4:-90497942 MS.gene034200:CDS
GGACTTCTTGGTGAAGGATG+TGG 0.492155 4.4:-90497268 MS.gene034200:CDS
TATGAGGTTTGACAATGTAA+AGG 0.499828 4.4:+90498013 None:intergenic
TGGGATTCTGACCCGCAACT+TGG 0.503137 4.4:-90497214 MS.gene034200:CDS
ATCAATGGTTGAAGCCCCAA+TGG 0.538102 4.4:+90497782 None:intergenic
CAAGCATTCTAGATTTGTTG+AGG 0.552143 4.4:-90497502 MS.gene034200:CDS
GACTTCTTGGTGAAGGATGT+GGG 0.555487 4.4:-90497267 MS.gene034200:CDS
GCAATGAGAAAATGATACAT+TGG 0.568531 4.4:+90498149 None:intergenic
AAAACAAAATACAACTTCGA+AGG 0.568698 4.4:+90497447 None:intergenic
TCTGAGATCATCACATACTC+AGG 0.569253 4.4:+90497312 None:intergenic
TGATTCTGTTCCGAACATTG+AGG 0.570760 4.4:-90497598 MS.gene034200:CDS
TCAAACCTCATAAACTCATG+TGG 0.578097 4.4:-90498002 MS.gene034200:CDS
GTAGTTCTAGCTTTGAGGCG+TGG 0.585169 4.4:-90497654 MS.gene034200:CDS
AACAATGGACTTCTTGGTGA+AGG 0.587900 4.4:-90497274 MS.gene034200:CDS
AAGACATTGCTACATGCCCT+GGG 0.601471 4.4:-90497233 MS.gene034200:CDS
CAAGTGTCTTCTCCAAGTTG+CGG 0.602943 4.4:+90497202 None:intergenic
AAACTGGAAATAGAACTTTG+AGG 0.609479 4.4:+90497555 None:intergenic
TACCTTTATTATGACAAGTG+AGG 0.612836 4.4:-90497112 MS.gene034200:CDS
TGGCAAATCTTTCTGAAATG+GGG 0.627523 4.4:+90497065 None:intergenic
TTATATGCATCCAATAACAA+TGG 0.629215 4.4:+90497045 None:intergenic
TTAATTCAGTAAAAGAAATG+GGG 0.635626 4.4:-90497476 MS.gene034200:CDS
CGGAACAGAATCATTAACCA+TGG 0.638798 4.4:+90497608 None:intergenic
CAAACCTCATAAACTCATGT+GGG 0.639091 4.4:-90498001 MS.gene034200:CDS
AAGCCCTTAAACTTTCAACA+AGG 0.642886 4.4:-90497965 MS.gene034200:CDS
TGCTTGGTGAATGCTACACA+AGG 0.683625 4.4:+90497519 None:intergenic
AGTTGCGGGTCAGAATCCCA+GGG 0.702455 4.4:+90497217 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAAAAAATTATGAAAACAA+TGG - chr4.4:90497883-90497902 MS.gene034200:CDS 15.0%
!!! ATTTTGATAAAAGTACAAAA+GGG + chr4.4:90497331-90497350 None:intergenic 15.0%
!! GTTAATTCAGTAAAAGAAAT+GGG - chr4.4:90497695-90497714 MS.gene034200:CDS 20.0%
!! TGTTAATTCAGTAAAAGAAA+TGG - chr4.4:90497694-90497713 MS.gene034200:CDS 20.0%
!! TTAATTCAGTAAAAGAAATG+GGG - chr4.4:90497696-90497715 MS.gene034200:CDS 20.0%
!!! GATTTTGATAAAAGTACAAA+AGG + chr4.4:90497332-90497351 None:intergenic 20.0%
! AAAACAAAATACAACTTCGA+AGG + chr4.4:90497728-90497747 None:intergenic 25.0%
! AAAGAACAGTAGTTGAATAA+AGG + chr4.4:90497073-90497092 None:intergenic 25.0%
! AAGAACAGTAGTTGAATAAA+GGG + chr4.4:90497072-90497091 None:intergenic 25.0%
! AAGTATGGACAAAGAAATTT+GGG - chr4.4:90497766-90497785 MS.gene034200:CDS 25.0%
! TAAGTATGGACAAAGAAATT+TGG - chr4.4:90497765-90497784 MS.gene034200:CDS 25.0%
! TTATATGCATCCAATAACAA+TGG + chr4.4:90498130-90498149 None:intergenic 25.0%
!!! CAAAATTTAAGATTTTCGAG+AGG - chr4.4:90497792-90497811 MS.gene034200:CDS 25.0%
!!! TTCGAAGTTGTATTTTGTTT+TGG - chr4.4:90497727-90497746 MS.gene034200:CDS 25.0%
AAAAGCTGAATAACAGCATT+TGG + chr4.4:90497257-90497276 None:intergenic 30.0%
AAACTGGAAATAGAACTTTG+AGG + chr4.4:90497620-90497639 None:intergenic 30.0%
AAAGCTGAATAACAGCATTT+GGG + chr4.4:90497256-90497275 None:intergenic 30.0%
CAACCTTGTTGAAAGTTTAA+GGG + chr4.4:90497213-90497232 None:intergenic 30.0%
GAAAGATTTGCCATTGTTAT+TGG - chr4.4:90498117-90498136 MS.gene034200:CDS 30.0%
GATTCGAGTAATTGTAAGTA+TGG - chr4.4:90497751-90497770 MS.gene034200:CDS 30.0%
TACCTTTATTATGACAAGTG+AGG - chr4.4:90498060-90498079 MS.gene034200:CDS 30.0%
TATGAGGTTTGACAATGTAA+AGG + chr4.4:90497162-90497181 None:intergenic 30.0%
TCAAAGTTCTATTTCCAGTT+TGG - chr4.4:90497619-90497638 MS.gene034200:CDS 30.0%
TCAAGAGGTTTAATAAAGAG+TGG - chr4.4:90498025-90498044 MS.gene034200:CDS 30.0%
TCCAACACAAATCAACATAA+AGG - chr4.4:90497131-90497150 MS.gene034200:CDS 30.0%
TTCCTCACTTGTCATAATAA+AGG + chr4.4:90498065-90498084 None:intergenic 30.0%
! AATGGCAAATCTTTCTGAAA+TGG + chr4.4:90498112-90498131 None:intergenic 30.0%
! ATCTTGATAACAGCACATTT+AGG + chr4.4:90497998-90498017 None:intergenic 30.0%
! GAACTTTTACAATGATTCCA+TGG - chr4.4:90497547-90497566 MS.gene034200:CDS 30.0%
! GATTGCAAAAACTTGAGTTT+TGG + chr4.4:90497371-90497390 None:intergenic 30.0%
! TATGAAAACAATGGACTTCT+TGG - chr4.4:90497892-90497911 MS.gene034200:CDS 30.0%
! TCAAGTTTTTGCAATCCATT+GGG - chr4.4:90497375-90497394 MS.gene034200:CDS 30.0%
! TTGTCACCAATCAAGATTTT+GGG + chr4.4:90497419-90497438 None:intergenic 30.0%
!! AAAACTTGAGTTTTGGCAAA+AGG + chr4.4:90497364-90497383 None:intergenic 30.0%
!! AAACTTGAGTTTTGGCAAAA+GGG + chr4.4:90497363-90497382 None:intergenic 30.0%
!! AATTTAAGATTTTCGAGAGG+TGG - chr4.4:90497795-90497814 MS.gene034200:CDS 30.0%
!! ACCTTTATGTTGATTTGTGT+TGG + chr4.4:90497135-90497154 None:intergenic 30.0%
!! ATGGCAAATCTTTCTGAAAT+GGG + chr4.4:90498111-90498130 None:intergenic 30.0%
!! ATTTAAGATTTTCGAGAGGT+GGG - chr4.4:90497796-90497815 MS.gene034200:CDS 30.0%
!! CTTTTAAGAATCTTGTAACG+AGG + chr4.4:90497476-90497495 None:intergenic 30.0%
!!! ATCAAGATTTTGAAGTCAAG+AGG - chr4.4:90498010-90498029 MS.gene034200:CDS 30.0%
AAGCCCTTAAACTTTCAACA+AGG - chr4.4:90497207-90497226 MS.gene034200:CDS 35.0%
ACAGCAGAGAAAAGTGAAAA+AGG + chr4.4:90497110-90497129 None:intergenic 35.0%
AGGAAAATTGGATACCAAAC+TGG + chr4.4:90497636-90497655 None:intergenic 35.0%
CAAACCTCATAAACTCATGT+GGG - chr4.4:90497171-90497190 MS.gene034200:CDS 35.0%
GAATGCTACACAAGGAAAAT+TGG + chr4.4:90497648-90497667 None:intergenic 35.0%
GATTTCCCCAAAATCTTGAT+TGG - chr4.4:90497410-90497429 MS.gene034200:CDS 35.0%
GCAACCTTGTTGAAAGTTTA+AGG + chr4.4:90497214-90497233 None:intergenic 35.0%
TCAAACCTCATAAACTCATG+TGG - chr4.4:90497170-90497189 MS.gene034200:CDS 35.0%
TCACATACTCAGGATACTTT+AGG + chr4.4:90497853-90497872 None:intergenic 35.0%
TTCCTCAAAACCTCAATGTT+CGG + chr4.4:90497587-90497606 None:intergenic 35.0%
TTGCAACTCATAAACCCTAA+TGG - chr4.4:90497230-90497249 MS.gene034200:CDS 35.0%
! ATTCAGCTTTTCAGAAGCTA+TGG - chr4.4:90497266-90497285 MS.gene034200:CDS 35.0%
! CAAGTTTTTGCAATCCATTG+GGG - chr4.4:90497376-90497395 MS.gene034200:CDS 35.0%
! CCTAGTTTGCGATGATAAAA+AGG - chr4.4:90497496-90497515 MS.gene034200:CDS 35.0%
! CCTTTTTATCATCGCAAACT+AGG + chr4.4:90497499-90497518 None:intergenic 35.0%
! CTCAACAAATCTAGAATGCT+TGG + chr4.4:90497672-90497691 None:intergenic 35.0%
! CTCAAGTTTTTGCAATCCAT+TGG - chr4.4:90497374-90497393 MS.gene034200:CDS 35.0%
! CTTGTCACCAATCAAGATTT+TGG + chr4.4:90497420-90497439 None:intergenic 35.0%
! TGTCACCAATCAAGATTTTG+GGG + chr4.4:90497418-90497437 None:intergenic 35.0%
!! AAAAGGTAGTTCTAGCTTTG+AGG - chr4.4:90497513-90497532 MS.gene034200:CDS 35.0%
!! CAAAAGGGTGTTTCTTAACA+AGG + chr4.4:90497316-90497335 None:intergenic 35.0%
!! CAAGATTTTGGGGAAATCAA+TGG + chr4.4:90497408-90497427 None:intergenic 35.0%
!! CAAGCATTCTAGATTTGTTG+AGG - chr4.4:90497670-90497689 MS.gene034200:CDS 35.0%
!! TGGCAAATCTTTCTGAAATG+GGG + chr4.4:90498110-90498129 None:intergenic 35.0%
!! TTTAAGATTTTCGAGAGGTG+GGG - chr4.4:90497797-90497816 MS.gene034200:CDS 35.0%
ACAACCCACATGAGTTTATG+AGG + chr4.4:90497178-90497197 None:intergenic 40.0%
ATAACAGCATTTGGGCCATT+AGG + chr4.4:90497248-90497267 None:intergenic 40.0%
CGGAACAGAATCATTAACCA+TGG + chr4.4:90497567-90497586 None:intergenic 40.0%
TAACAGCATTTGGGCCATTA+GGG + chr4.4:90497247-90497266 None:intergenic 40.0%
TGATTCTGTTCCGAACATTG+AGG - chr4.4:90497574-90497593 MS.gene034200:CDS 40.0%
! AACAATGGACTTCTTGGTGA+AGG - chr4.4:90497898-90497917 MS.gene034200:CDS 40.0%
! CAAGTTTTTGACAGCAAGCT+TGG - chr4.4:90497436-90497455 MS.gene034200:CDS 40.0%
! TCTGAGATCATCACATACTC+AGG + chr4.4:90497863-90497882 None:intergenic 40.0%
! TTCCGAACATTGAGGTTTTG+AGG - chr4.4:90497582-90497601 MS.gene034200:CDS 40.0%
!!! ATTGAGGTTTTGAGGAAGCT+TGG - chr4.4:90497590-90497609 MS.gene034200:CDS 40.0%
AAGACATTGCTACATGCCCT+GGG - chr4.4:90497939-90497958 MS.gene034200:CDS 45.0%
AAGTGTCTTCTCCAAGTTGC+GGG + chr4.4:90497972-90497991 None:intergenic 45.0%
ATCAATGGTTGAAGCCCCAA+TGG + chr4.4:90497393-90497412 None:intergenic 45.0%
CAAGTGTCTTCTCCAAGTTG+CGG + chr4.4:90497973-90497992 None:intergenic 45.0%
GACTTCTTGGTGAAGGATGT+GGG - chr4.4:90497905-90497924 MS.gene034200:CDS 45.0%
! TGCTTGGTGAATGCTACACA+AGG + chr4.4:90497656-90497675 None:intergenic 45.0%
GAAGACATTGCTACATGCCC+TGG - chr4.4:90497938-90497957 MS.gene034200:CDS 50.0%
GGACTTCTTGGTGAAGGATG+TGG - chr4.4:90497904-90497923 MS.gene034200:CDS 50.0%
GGGCATGTAGCAATGTCTTC+TGG + chr4.4:90497938-90497957 None:intergenic 50.0%
!! GTAGTTCTAGCTTTGAGGCG+TGG - chr4.4:90497518-90497537 MS.gene034200:CDS 50.0%
!! TAGCTTTGAGGCGTGGATCA+TGG - chr4.4:90497525-90497544 MS.gene034200:CDS 50.0%
AAGTTGCGGGTCAGAATCCC+AGG + chr4.4:90497959-90497978 None:intergenic 55.0%
AGTTGCGGGTCAGAATCCCA+GGG + chr4.4:90497958-90497977 None:intergenic 55.0%
TGGGATTCTGACCCGCAACT+TGG - chr4.4:90497958-90497977 MS.gene034200:CDS 55.0%
!! AGATTTTCGAGAGGTGGGGC+TGG - chr4.4:90497801-90497820 MS.gene034200:CDS 55.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 90497026 90498168 90497026 ID=MS.gene034200
chr4.4 mRNA 90497026 90498168 90497026 ID=MS.gene034200.t1;Parent=MS.gene034200
chr4.4 exon 90497026 90498168 90497026 ID=MS.gene034200.t1.exon1;Parent=MS.gene034200.t1
chr4.4 CDS 90497026 90498168 90497026 ID=cds.MS.gene034200.t1;Parent=MS.gene034200.t1
Gene Sequence

>MS.gene034200

ATGTATCATTTTCTCATTGCTAGATTCACTCATACTCATAGAACCCTTTATTCAACTACTGTTCTTTATCACAGACACAATCCTTTTTCACTTTTCTCTGCTGTTTCCAACACAAATCAACATAAAGGTGACACCTTTACATTGTCAAACCTCATAAACTCATGTGGGTTGTCTCTTGAAAAAGCCCTTAAACTTTCAACAAGGTTGCAACTCATAAACCCTAATGGCCCAAATGCTGTTATTCAGCTTTTCAGAAGCTATGGTTTCTCTGATTCTCAGTTATCAAGCCTTGTTAAGAAACACCCTTTTGTACTTTTATCAAAATCTGATAAGACCCTTTTGCCAAAACTCAAGTTTTTGCAATCCATTGGGGCTTCAACCATTGATTTCCCCAAAATCTTGATTGGTGACAAGTTTTTGACAGCAAGCTTGGAGAAAACGATAATACCTCGTTACAAGATTCTTAAAAGCCTAGTTTGCGATGATAAAAAGGTAGTTCTAGCTTTGAGGCGTGGATCATGGAACTTTTACAATGATTCCATGGTTAATGATTCTGTTCCGAACATTGAGGTTTTGAGGAAGCTTGGTGTGCCTCAAAGTTCTATTTCCAGTTTGGTATCCAATTTTCCTTGTGTAGCATTCACCAAGCATTCTAGATTTGTTGAGGCTGTTAATTCAGTAAAAGAAATGGGGTTCAATCCTTCGAAGTTGTATTTTGTTTTGGCGATTCGAGTAATTGTAAGTATGGACAAAGAAATTTGGGAATCAAAATTTAAGATTTTCGAGAGGTGGGGCTGGTCGAGAGATATTTGTCGTTTCGCTTTCCTAAAGTATCCTGAGTATGTGATGATCTCAGAGAAAAAAATTATGAAAACAATGGACTTCTTGGTGAAGGATGTGGGTCTTACACCAGAAGACATTGCTACATGCCCTGGGATTCTGACCCGCAACTTGGAGAAGACACTTGTACCTAAATGTGCTGTTATCAAGATTTTGAAGTCAAGAGGTTTAATAAAGAGTGGTTTGCGTGTAAGTACCTTTATTATGACAAGTGAGGAAAAGTTTGTGCAGAAATATGTGACCCCATTTCAGAAAGATTTGCCATTGTTATTGGATGCATATAAAGTTCAGAAATCAGATTGA
Protein sequence

>MS.gene034200.t1

MYHFLIARFTHTHRTLYSTTVLYHRHNPFSLFSAVSNTNQHKGDTFTLSNLINSCGLSLEKALKLSTRLQLINPNGPNAVIQLFRSYGFSDSQLSSLVKKHPFVLLSKSDKTLLPKLKFLQSIGASTIDFPKILIGDKFLTASLEKTIIPRYKILKSLVCDDKKVVLALRRGSWNFYNDSMVNDSVPNIEVLRKLGVPQSSISSLVSNFPCVAFTKHSRFVEAVNSVKEMGFNPSKLYFVLAIRVIVSMDKEIWESKFKIFERWGWSRDICRFAFLKYPEYVMISEKKIMKTMDFLVKDVGLTPEDIATCPGILTRNLEKTLVPKCAVIKILKSRGLIKSGLRVSTFIMTSEEKFVQKYVTPFQKDLPLLLDAYKVQKSD