AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene034240

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene034240.t1 MTR_4g007060 97.161 317 6 1 1 314 1 317 0.0 631
MS.gene034240.t1 MTR_4g007060 95.000 280 11 1 38 314 4 283 0.0 539
MS.gene034240.t1 MTR_4g007060 92.958 213 15 0 1 213 1 213 6.70e-116 334
MS.gene034240.t1 MTR_2g105060 57.716 324 112 9 4 314 5 316 2.15e-109 320
MS.gene034240.t1 MTR_2g105060 58.498 253 87 6 68 314 1 241 1.20e-86 260
MS.gene034240.t1 MTR_3g106060 47.302 315 122 13 7 311 6 286 3.88e-73 227
MS.gene034240.t1 MTR_1g013760 45.520 279 120 9 43 311 20 276 2.55e-62 199
MS.gene034240.t1 MTR_4g007060 95.726 117 5 0 44 160 10 126 2.93e-44 149
MS.gene034240.t1 MTR_1g013790 37.500 264 128 6 45 307 6 233 1.86e-42 147
MS.gene034240.t1 MTR_7g110720 31.046 306 155 9 51 307 100 398 2.85e-37 138
MS.gene034240.t1 MTR_7g110720 30.952 294 144 8 51 307 100 371 1.80e-35 132
MS.gene034240.t1 MTR_2g023930 34.649 228 102 5 43 223 139 366 8.92e-35 133
MS.gene034240.t1 MTR_4g132430 29.365 252 138 5 6 223 77 322 2.63e-31 122
MS.gene034240.t1 MTR_3g053330 33.654 208 93 5 145 307 234 441 1.23e-29 117
MS.gene034240.t1 MTR_2g088000 25.000 380 162 7 51 307 173 552 1.71e-27 112
MS.gene034240.t1 MTR_4g132430 48.276 87 45 0 137 223 102 188 2.88e-27 109
MS.gene034240.t1 MTR_4g094412 54.762 84 31 2 140 222 217 294 2.09e-26 108
MS.gene034240.t1 MTR_4g094412 54.762 84 31 2 140 222 226 303 2.12e-26 108
MS.gene034240.t1 MTR_4g107970 57.500 80 32 2 143 222 161 238 1.59e-25 106
MS.gene034240.t1 MTR_7g009730 56.098 82 34 2 139 220 198 277 1.83e-25 106
MS.gene034240.t1 MTR_4g107970 57.500 80 32 2 143 222 238 315 2.53e-25 106
MS.gene034240.t1 MTR_4g049760 50.000 84 42 0 139 222 267 350 2.82e-25 106
MS.gene034240.t1 MTR_2g045360 41.284 109 64 0 137 245 186 294 8.79e-25 103
MS.gene034240.t1 MTR_4g049790 33.136 169 70 4 121 265 290 439 7.75e-22 96.3
MS.gene034240.t1 MTR_5g016610 43.200 125 58 4 95 219 145 256 1.39e-21 92.4
MS.gene034240.t1 MTR_2g033820 58.065 62 25 1 161 222 202 262 5.90e-20 89.7
MS.gene034240.t1 MTR_7g079010 42.241 116 56 4 112 220 87 198 1.17e-19 86.3
MS.gene034240.t1 MTR_4g094908 60.000 60 24 0 160 219 264 323 1.19e-19 88.2
MS.gene034240.t1 MTR_1g086790 56.452 62 26 1 161 222 157 217 2.06e-19 87.4
MS.gene034240.t1 MTR_5g094430 57.143 63 26 1 160 222 228 289 4.74e-19 87.4
MS.gene034240.t1 MTR_5g094430 50.000 60 28 2 163 222 67 124 1.85e-12 67.8
MS.gene034240.t1 MTR_5g094430 57.143 63 26 1 160 222 250 311 5.93e-19 87.0
MS.gene034240.t1 MTR_5g094430 50.000 60 28 2 163 222 89 146 2.03e-12 67.8
MS.gene034240.t1 MTR_5g094430 57.143 63 26 1 160 222 362 423 6.11e-19 87.4
MS.gene034240.t1 MTR_5g094430 50.000 60 28 2 163 222 201 258 2.16e-12 67.8
MS.gene034240.t1 MTR_7g109800 39.655 116 59 4 133 248 126 230 7.87e-19 85.5
MS.gene034240.t1 MTR_3g031220 40.157 127 60 5 120 238 315 433 8.26e-19 87.0
MS.gene034240.t1 MTR_3g031220 53.333 60 26 2 163 222 199 256 1.64e-15 77.4
MS.gene034240.t1 MTR_5g074400 52.055 73 30 2 160 232 418 485 1.24e-18 86.7
MS.gene034240.t1 MTR_5g074400 53.333 60 26 2 163 222 244 301 1.69e-15 77.4
MS.gene034240.t1 MTR_3g056100 57.143 63 26 1 160 222 256 317 1.26e-18 86.3
MS.gene034240.t1 MTR_3g056100 50.000 60 28 2 163 222 100 157 3.02e-12 67.4
MS.gene034240.t1 MTR_3g056100 57.143 63 26 1 160 222 400 461 1.28e-18 86.7
MS.gene034240.t1 MTR_3g056100 50.000 60 28 2 163 222 244 301 3.28e-12 67.4
MS.gene034240.t1 MTR_3g056100 57.143 63 26 1 160 222 413 474 1.35e-18 86.7
MS.gene034240.t1 MTR_3g056100 50.000 60 28 2 163 222 244 301 3.44e-12 67.4
MS.gene034240.t1 MTR_3g056100 57.143 63 26 1 160 222 269 330 1.40e-18 86.3
MS.gene034240.t1 MTR_3g056100 50.000 60 28 2 163 222 100 157 3.12e-12 67.4
MS.gene034240.t1 MTR_1g009613 52.778 72 32 1 150 219 248 319 1.54e-18 85.1
MS.gene034240.t1 MTR_3g104750 54.098 61 27 1 160 220 102 161 1.72e-18 81.6
MS.gene034240.t1 MTR_1g015140 52.459 61 28 1 160 220 100 159 3.13e-18 80.9
MS.gene034240.t1 MTR_5g097490 51.948 77 34 3 146 222 238 311 3.18e-18 84.7
MS.gene034240.t1 MTR_5g097490 44.444 63 33 2 160 222 90 150 3.11e-11 63.9
MS.gene034240.t1 MTR_4g094588 51.613 62 29 1 161 222 177 237 3.55e-18 84.0
MS.gene034240.t1 MTR_4g127040 43.299 97 51 2 125 221 212 304 3.71e-18 83.6
MS.gene034240.t1 MTR_2g032030 49.367 79 39 1 157 234 261 339 4.48e-18 84.7
MS.gene034240.t1 MTR_2g032030 49.367 79 39 1 157 234 261 339 4.50e-18 84.7
MS.gene034240.t1 MTR_7g071120 39.806 103 57 3 160 262 322 419 6.12e-18 84.3
MS.gene034240.t1 MTR_7g071120 50.820 61 28 2 162 222 166 224 6.22e-14 72.4
MS.gene034240.t1 MTR_7g100510 52.381 63 29 1 160 222 359 420 8.84e-18 83.6
MS.gene034240.t1 MTR_7g100510 50.725 69 32 2 163 231 190 256 1.24e-16 80.5
MS.gene034240.t1 MTR_1g070455 53.125 64 30 0 160 223 291 354 1.19e-17 82.8
MS.gene034240.t1 MTR_5g042920 52.381 63 29 1 160 222 318 379 1.91e-17 82.8
MS.gene034240.t1 MTR_5g042920 53.333 60 26 2 163 222 152 209 6.60e-14 72.4
MS.gene034240.t1 MTR_7g028415 52.459 61 28 1 160 220 91 150 4.04e-17 77.8
MS.gene034240.t1 MTR_7g028710 52.459 61 28 1 160 220 91 150 4.04e-17 77.8
MS.gene034240.t1 MTR_7g109600 47.761 67 35 0 163 229 54 120 6.01e-17 79.3
MS.gene034240.t1 MTR_3g009470 53.968 63 28 1 160 222 493 554 6.57e-17 81.6
MS.gene034240.t1 MTR_3g009470 48.571 70 34 2 154 223 272 339 1.32e-14 74.7
MS.gene034240.t1 MTR_4g082580 52.381 63 29 1 160 222 276 337 7.68e-17 80.9
MS.gene034240.t1 MTR_4g082580 50.000 60 29 1 163 222 146 204 6.34e-12 66.2
MS.gene034240.t1 MTR_5g091390 49.231 65 32 1 161 225 156 219 1.02e-16 79.7
MS.gene034240.t1 MTR_4g130900 32.203 177 97 5 92 252 288 457 1.05e-16 80.9
MS.gene034240.t1 MTR_4g013260 52.381 63 29 1 160 222 334 395 1.14e-16 80.5
MS.gene034240.t1 MTR_4g013260 35.593 118 70 3 162 275 184 299 1.45e-15 77.4
MS.gene034240.t1 MTR_7g080000 39.806 103 56 3 125 222 390 491 1.61e-16 80.5
MS.gene034240.t1 MTR_7g080000 46.774 62 31 2 161 222 233 292 7.58e-11 63.5
MS.gene034240.t1 MTR_8g096730 47.541 61 31 1 160 220 68 127 1.75e-16 75.5
MS.gene034240.t1 MTR_7g011820 53.333 60 27 1 160 219 408 466 2.11e-16 80.1
MS.gene034240.t1 MTR_7g011820 51.613 62 26 3 163 222 229 288 8.96e-13 68.9
MS.gene034240.t1 MTR_8g028565 46.479 71 38 0 163 233 156 226 3.42e-16 78.6
MS.gene034240.t1 MTR_4g047580 32.673 101 64 1 139 235 258 358 4.22e-16 79.0
MS.gene034240.t1 MTR_8g098945 44.444 81 41 1 163 239 130 210 4.25e-16 77.4
MS.gene034240.t1 MTR_7g080020 52.381 63 29 1 160 222 491 552 8.05e-16 78.6
MS.gene034240.t1 MTR_7g080020 49.180 61 29 2 162 222 280 338 1.59e-11 65.5
MS.gene034240.t1 MTR_3g031220 53.333 60 26 2 163 222 199 256 8.60e-16 77.8
MS.gene034240.t1 MTR_8g087000 50.000 60 30 0 163 222 78 137 9.05e-16 75.9
MS.gene034240.t1 MTR_8g087000 50.000 60 30 0 163 222 77 136 9.27e-16 75.9
MS.gene034240.t1 MTR_2g024350 35.556 135 75 4 162 288 8 138 1.37e-15 75.1
MS.gene034240.t1 MTR_1g077780 47.619 63 32 1 160 222 60 121 1.42e-15 73.2
MS.gene034240.t1 MTR_3g095040 50.794 63 30 1 160 222 116 177 2.01e-15 73.9
MS.gene034240.t1 MTR_4g122530 48.387 62 31 1 161 222 207 267 2.16e-15 76.6
MS.gene034240.t1 MTR_8g092010 50.794 63 30 1 160 222 106 167 2.28e-15 73.6
MS.gene034240.t1 MTR_3g108960 46.269 67 36 0 160 226 312 378 2.70e-15 76.3
MS.gene034240.t1 MTR_7g079040 33.333 120 78 1 160 277 152 271 2.79e-15 75.5
MS.gene034240.t1 MTR_5g043880 49.153 59 29 1 161 219 123 180 2.85e-15 75.1
MS.gene034240.t1 MTR_2g024380 49.180 61 31 0 162 222 251 311 3.76e-15 76.3
MS.gene034240.t1 MTR_2g016770 45.902 61 33 0 163 223 36 96 4.61e-15 73.2
MS.gene034240.t1 MTR_2g016770 45.902 61 33 0 163 223 28 88 5.50e-15 72.8
MS.gene034240.t1 MTR_8g092140 43.836 73 39 2 147 219 146 216 6.60e-15 73.2
MS.gene034240.t1 MTR_8g007270 50.000 60 29 1 160 219 152 210 7.27e-15 72.8
MS.gene034240.t1 MTR_3g095080 48.333 60 30 1 160 219 166 224 9.31e-15 72.8
MS.gene034240.t1 MTR_3g009470 50.000 66 31 2 158 223 276 339 9.61e-15 75.1
MS.gene034240.t1 MTR_3g095080 48.333 60 30 1 160 219 142 200 1.03e-14 72.4
MS.gene034240.t1 MTR_1g099600 43.056 72 41 0 163 234 186 257 1.85e-14 73.2
MS.gene034240.t1 MTR_7g062220 50.820 61 29 1 163 223 125 184 2.54e-14 72.8
MS.gene034240.t1 MTR_0117s0040 46.667 60 32 0 160 219 72 131 5.07e-14 70.9
MS.gene034240.t1 MTR_2g083870 48.333 60 31 0 163 222 81 140 1.63e-13 69.7
MS.gene034240.t1 MTR_5g044695 42.593 54 31 0 137 190 52 105 4.06e-12 62.4
MS.gene034240.t1 MTR_5g097500 36.264 91 49 3 149 239 217 298 4.60e-12 66.2
MS.gene034240.t1 MTR_8g067650 46.032 63 34 0 160 222 337 399 1.46e-11 65.5
MS.gene034240.t1 MTR_8g067635 46.032 63 34 0 160 222 347 409 1.49e-11 65.5
MS.gene034240.t1 MTR_6g053200 42.424 66 38 0 157 222 325 390 3.70e-11 64.3
MS.gene034240.t1 MTR_8g069935 42.623 61 35 0 162 222 331 391 4.67e-11 63.5
MS.gene034240.t1 MTR_1g078260 43.662 71 36 3 150 219 237 304 6.50e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene034240.t1 AT1G80840 51.724 319 120 7 4 314 6 298 1.86e-96 287
MS.gene034240.t1 AT4G31800 45.260 327 141 5 1 311 1 305 7.34e-80 245
MS.gene034240.t1 AT2G25000 41.748 309 131 7 12 314 4 269 4.07e-64 204
MS.gene034240.t1 AT4G31800 44.615 260 108 4 68 311 1 240 4.02e-62 197
MS.gene034240.t1 AT2G25000 43.657 268 104 6 51 314 2 226 4.61e-60 192
MS.gene034240.t1 AT2G25000 43.657 268 104 6 51 314 2 226 4.61e-60 192
MS.gene034240.t1 AT2G25000 43.820 267 103 6 51 313 24 247 2.74e-59 191
MS.gene034240.t1 AT4G31800 48.837 215 92 3 1 199 1 213 8.78e-57 184
MS.gene034240.t1 AT1G62300 30.686 277 126 7 50 260 159 435 2.01e-32 126
MS.gene034240.t1 AT4G01720 31.683 202 112 3 48 223 99 300 7.75e-28 113
MS.gene034240.t1 AT4G04450 37.500 160 74 4 129 262 165 324 1.82e-27 111
MS.gene034240.t1 AT4G04450 37.500 160 74 4 129 262 259 418 4.53e-27 111
MS.gene034240.t1 AT4G22070 51.220 82 40 0 142 223 277 358 8.11e-27 110
MS.gene034240.t1 AT4G22070 51.220 82 40 0 142 223 277 358 8.11e-27 110
MS.gene034240.t1 AT4G22070 51.220 82 40 0 142 223 277 358 8.11e-27 110
MS.gene034240.t1 AT4G22070 51.220 82 40 0 142 223 277 358 8.11e-27 110
MS.gene034240.t1 AT1G68150 53.571 84 32 2 140 222 218 295 2.61e-25 104
MS.gene034240.t1 AT1G18860 61.290 62 24 0 161 222 238 299 3.50e-24 102
MS.gene034240.t1 AT5G15130 52.564 78 37 0 145 222 168 245 4.60e-24 102
MS.gene034240.t1 AT5G15130 52.564 78 37 0 145 222 210 287 4.95e-24 102
MS.gene034240.t1 AT5G07100 36.806 144 83 5 79 222 65 200 1.79e-21 90.9
MS.gene034240.t1 AT5G07100 38.053 113 60 3 163 274 25 128 5.45e-16 75.9
MS.gene034240.t1 AT5G07100 36.806 144 83 5 79 222 65 200 1.79e-21 90.9
MS.gene034240.t1 AT5G07100 38.053 113 60 3 163 274 25 128 5.45e-16 75.9
MS.gene034240.t1 AT5G07100 36.806 144 83 5 79 222 65 200 1.79e-21 90.9
MS.gene034240.t1 AT5G07100 38.053 113 60 3 163 274 25 128 5.45e-16 75.9
MS.gene034240.t1 AT5G07100 36.806 144 83 5 79 222 65 200 1.79e-21 90.9
MS.gene034240.t1 AT5G07100 38.053 113 60 3 163 274 25 128 5.45e-16 75.9
MS.gene034240.t1 AT5G07100 36.806 144 83 5 79 222 158 293 3.01e-21 92.4
MS.gene034240.t1 AT5G07100 38.053 113 60 3 163 274 118 221 3.74e-15 75.1
MS.gene034240.t1 AT2G04880 50.617 81 31 2 160 240 281 352 4.90e-21 93.6
MS.gene034240.t1 AT2G04880 44.444 63 33 2 160 222 109 169 4.57e-13 69.7
MS.gene034240.t1 AT2G04880 50.617 81 31 2 160 240 305 376 5.17e-21 93.6
MS.gene034240.t1 AT2G04880 44.444 63 33 2 160 222 109 169 4.72e-13 69.7
MS.gene034240.t1 AT5G13080 43.269 104 56 2 117 220 24 124 7.39e-20 84.7
MS.gene034240.t1 AT4G31550 40.351 114 64 2 119 232 207 316 7.90e-20 88.6
MS.gene034240.t1 AT1G69810 27.273 264 123 7 26 222 3 264 1.08e-19 89.0
MS.gene034240.t1 AT2G30590 39.091 110 63 2 114 223 269 374 1.94e-19 88.2
MS.gene034240.t1 AT1G29860 44.828 87 38 2 161 238 135 220 2.30e-19 86.7
MS.gene034240.t1 AT4G31550 52.055 73 35 0 160 232 243 315 3.16e-19 87.0
MS.gene034240.t1 AT2G38470 45.652 92 45 2 160 251 360 446 3.96e-19 88.2
MS.gene034240.t1 AT2G38470 54.098 61 26 2 162 222 184 242 6.10e-16 78.6
MS.gene034240.t1 AT1G69810 44.828 87 45 2 137 222 122 206 5.10e-19 86.3
MS.gene034240.t1 AT2G23320 57.895 57 24 0 163 219 241 297 6.71e-19 85.9
MS.gene034240.t1 AT2G24570 41.748 103 56 2 119 221 204 302 1.02e-18 85.5
MS.gene034240.t1 AT1G55600 59.016 61 24 1 163 223 308 367 1.52e-18 86.3
MS.gene034240.t1 AT5G26170 53.333 60 27 1 160 219 111 169 2.39e-18 81.3
MS.gene034240.t1 AT5G56270 55.556 63 27 1 160 222 485 546 3.43e-18 85.5
MS.gene034240.t1 AT5G56270 27.542 236 147 5 43 272 161 378 1.16e-14 75.1
MS.gene034240.t1 AT3G04670 41.584 101 55 2 119 219 223 319 3.82e-18 84.0
MS.gene034240.t1 AT5G49520 53.226 62 28 1 161 222 220 280 3.93e-18 84.7
MS.gene034240.t1 AT4G18170 51.613 62 29 1 161 222 171 231 5.02e-18 83.6
MS.gene034240.t1 AT3G62340 50.685 73 35 1 159 231 115 186 5.29e-18 82.8
MS.gene034240.t1 AT4G26640 55.556 63 27 1 160 222 203 264 5.59e-18 84.0
MS.gene034240.t1 AT4G26640 41.250 80 45 2 152 231 25 102 1.30e-12 68.2
MS.gene034240.t1 AT4G26640 55.556 63 27 1 160 222 203 264 5.59e-18 84.0
MS.gene034240.t1 AT4G26640 41.250 80 45 2 152 231 25 102 1.30e-12 68.2
MS.gene034240.t1 AT4G26640 55.556 63 27 1 160 222 203 264 5.59e-18 84.0
MS.gene034240.t1 AT4G26640 41.250 80 45 2 152 231 25 102 1.30e-12 68.2
MS.gene034240.t1 AT4G26640 55.556 63 27 1 160 222 203 264 5.59e-18 84.0
MS.gene034240.t1 AT4G26640 41.250 80 45 2 152 231 25 102 1.30e-12 68.2
MS.gene034240.t1 AT4G24240 44.318 88 45 2 132 219 255 338 5.94e-18 83.6
MS.gene034240.t1 AT1G13960 53.968 63 28 1 160 222 254 315 6.67e-18 83.6
MS.gene034240.t1 AT1G13960 56.452 62 24 3 163 224 77 135 1.33e-15 77.0
MS.gene034240.t1 AT1G13960 55.000 60 26 1 160 219 407 465 7.67e-18 84.3
MS.gene034240.t1 AT1G13960 56.452 62 24 3 163 224 230 288 1.31e-15 77.8
MS.gene034240.t1 AT5G28650 41.584 101 55 2 119 219 223 319 7.86e-18 83.2
MS.gene034240.t1 AT1G64000 39.796 98 54 3 132 229 88 180 8.06e-18 80.5
MS.gene034240.t1 AT4G26640 55.556 63 27 1 160 222 379 440 8.45e-18 84.3
MS.gene034240.t1 AT4G26640 41.250 80 45 2 152 231 201 278 1.91e-12 68.2
MS.gene034240.t1 AT4G26640 56.667 60 25 1 160 219 339 397 8.55e-18 84.0
MS.gene034240.t1 AT4G26640 43.662 71 38 2 152 222 161 229 2.09e-12 67.8
MS.gene034240.t1 AT4G26640 55.556 63 27 1 160 222 307 368 8.92e-18 84.0
MS.gene034240.t1 AT4G26640 41.250 80 45 2 152 231 129 206 2.00e-12 67.8
MS.gene034240.t1 AT1G29280 51.667 60 29 0 163 222 75 134 9.13e-18 81.6
MS.gene034240.t1 AT5G41570 46.753 77 38 2 144 220 82 155 9.32e-18 80.1
MS.gene034240.t1 AT2G03340 53.968 63 28 1 160 222 413 474 1.12e-17 84.0
MS.gene034240.t1 AT2G03340 50.000 72 34 2 163 234 251 320 2.97e-15 76.6
MS.gene034240.t1 AT2G47260 54.839 62 27 1 161 222 173 233 2.28e-17 81.6
MS.gene034240.t1 AT5G46350 42.697 89 47 2 161 246 182 269 2.42e-17 81.6
MS.gene034240.t1 AT2G30250 43.750 96 45 4 133 222 295 387 3.17e-17 82.0
MS.gene034240.t1 AT2G30250 48.333 60 29 2 163 222 167 224 6.10e-12 66.2
MS.gene034240.t1 AT2G37260 45.977 87 44 3 136 222 58 141 5.04e-17 80.9
MS.gene034240.t1 AT2G37260 35.135 111 58 3 116 219 220 323 5.18e-15 75.1
MS.gene034240.t1 AT2G37260 45.977 87 44 3 136 222 60 143 5.07e-17 80.9
MS.gene034240.t1 AT2G37260 35.135 111 58 3 116 219 222 325 5.20e-15 75.1
MS.gene034240.t1 AT3G01080 52.381 63 29 1 160 222 342 403 5.09e-17 81.6
MS.gene034240.t1 AT3G01080 51.667 60 27 2 163 222 206 263 1.71e-12 68.2
MS.gene034240.t1 AT3G01080 52.381 63 29 1 160 222 304 365 5.42e-17 81.3
MS.gene034240.t1 AT3G01080 51.667 60 27 2 163 222 168 225 1.81e-12 67.8
MS.gene034240.t1 AT2G37260 45.977 87 44 3 136 222 140 223 6.34e-17 81.3
MS.gene034240.t1 AT2G37260 35.135 111 58 3 116 219 302 405 5.75e-15 75.5
MS.gene034240.t1 AT3G01970 53.333 60 27 1 160 219 63 121 8.82e-17 76.3
MS.gene034240.t1 AT1G69310 52.542 59 27 1 161 219 146 203 1.18e-16 79.0
MS.gene034240.t1 AT1G69310 52.542 59 27 1 161 219 146 203 1.18e-16 79.0
MS.gene034240.t1 AT1G69310 52.542 59 27 1 161 219 146 203 1.18e-16 79.0
MS.gene034240.t1 AT4G30935 45.946 74 38 2 149 222 319 390 1.50e-16 80.5
MS.gene034240.t1 AT2G21900 49.254 67 33 1 156 222 103 168 1.63e-16 77.0
MS.gene034240.t1 AT2G34830 35.115 131 75 2 109 230 154 283 1.69e-16 80.1
MS.gene034240.t1 AT2G34830 35.115 131 75 2 109 230 163 292 1.79e-16 80.1
MS.gene034240.t1 AT4G01250 45.070 71 39 0 163 233 129 199 4.44e-16 77.8
MS.gene034240.t1 AT1G30650 45.833 72 39 0 159 230 214 285 6.76e-16 78.2
MS.gene034240.t1 AT5G64810 37.000 100 60 2 120 219 70 166 1.20e-15 74.3
MS.gene034240.t1 AT5G52830 37.963 108 64 1 163 267 166 273 1.35e-15 76.6
MS.gene034240.t1 AT5G43290 41.176 85 48 2 135 219 88 170 1.56e-15 75.9
MS.gene034240.t1 AT2G44745 48.571 70 33 2 160 229 143 209 1.99e-15 74.3
MS.gene034240.t1 AT4G26440 52.381 63 29 1 160 222 370 431 2.46e-15 77.0
MS.gene034240.t1 AT4G26440 47.541 61 30 2 163 223 179 237 2.35e-12 67.8
MS.gene034240.t1 AT2G46130 50.820 61 29 1 160 220 28 87 4.06e-15 70.9
MS.gene034240.t1 AT3G58710 46.154 78 38 1 163 240 71 144 6.15e-15 73.9
MS.gene034240.t1 AT3G58710 46.154 78 38 1 163 240 72 145 6.22e-15 73.9
MS.gene034240.t1 AT4G39410 50.000 60 29 1 160 219 221 279 6.85e-15 74.3
MS.gene034240.t1 AT5G45050 30.405 148 89 3 83 230 976 1109 1.41e-14 75.1
MS.gene034240.t1 AT5G45050 30.405 148 89 3 83 230 1115 1248 1.42e-14 75.1
MS.gene034240.t1 AT5G45050 30.405 148 89 3 83 230 1087 1220 1.46e-14 75.1
MS.gene034240.t1 AT5G45260 35.833 120 70 3 121 238 1172 1286 9.34e-14 72.4
MS.gene034240.t1 AT4G23550 38.667 75 46 0 160 234 138 212 4.14e-13 69.3
MS.gene034240.t1 AT1G69310 50.847 59 24 2 161 219 146 199 9.24e-13 67.8
MS.gene034240.t1 AT3G01080 51.667 60 27 2 163 222 206 263 1.28e-12 67.8
MS.gene034240.t1 AT3G32090 46.753 77 34 2 180 249 76 152 3.13e-12 64.7
MS.gene034240.t1 AT4G12020 38.824 85 50 2 161 245 467 549 1.05e-11 66.2
MS.gene034240.t1 AT4G12020 38.824 85 50 2 161 245 467 549 1.10e-11 66.2
MS.gene034240.t1 AT4G12020 38.824 85 50 2 161 245 467 549 1.10e-11 66.2
MS.gene034240.t1 AT4G12020 38.824 85 50 2 161 245 467 549 1.10e-11 66.2
MS.gene034240.t1 AT4G12020 38.824 85 50 2 161 245 400 482 1.16e-11 66.2
MS.gene034240.t1 AT4G12020 38.824 85 50 2 161 245 467 549 1.16e-11 66.2
MS.gene034240.t1 AT4G12020 38.824 85 50 2 161 245 467 549 1.19e-11 66.2
MS.gene034240.t1 AT4G12020 38.824 85 50 2 161 245 467 549 1.22e-11 66.2
MS.gene034240.t1 AT4G12020 38.824 85 50 2 161 245 467 549 1.22e-11 66.2
MS.gene034240.t1 AT4G12020 38.824 85 50 2 161 245 467 549 1.23e-11 66.2
MS.gene034240.t1 AT4G12020 38.824 85 50 2 161 245 467 549 1.85e-11 65.5
MS.gene034240.t1 AT2G46130 49.180 61 26 2 160 220 28 83 3.14e-11 59.7

Find 61 sgRNAs with CRISPR-Local

Find 116 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACATAAGCTCTTGAAATTT+TGG 0.096984 4.1:+88376104 None:intergenic
ACAAGTGCTGCTCTAAAATT+TGG 0.202946 4.1:+88375063 None:intergenic
ACCTAAGGTACCAAAGAATT+TGG 0.225108 4.1:-88375118 MS.gene034240:CDS
TGCAGCCATTTCAGGAAAAT+TGG 0.259692 4.1:-88375040 MS.gene034240:CDS
GCACTTGTTGCAGCCATTTC+AGG 0.268706 4.1:-88375048 MS.gene034240:CDS
GGATATCATTGGAGGAAATA+TGG 0.293100 4.1:-88375783 MS.gene034240:CDS
ATTTGTTCCACCAAATTCTT+TGG 0.303785 4.1:+88375108 None:intergenic
CACTTTGAGAAGTCATTTGA+TGG 0.316280 4.1:-88376301 MS.gene034240:CDS
ATTTCAGTCCATCGATGAAT+TGG 0.333220 4.1:-88376400 MS.gene034240:intron
AACCTTAGAAAACAAGAAAT+TGG 0.335631 4.1:-88376358 MS.gene034240:CDS
AATAACAATAGTAATTTGAT+TGG 0.348469 4.1:-88376207 MS.gene034240:CDS
AACTTCTTCATGAGCTCTAT+AGG 0.350958 4.1:+88377159 None:intergenic
CCACAGTTCGGTACCTTGTT+CGG 0.368882 4.1:-88375241 MS.gene034240:CDS
GATGTGCTTACTTCTTTCTC+AGG 0.378143 4.1:+88376261 None:intergenic
GAGTCAAGTGTAACCACTTT+TGG 0.384251 4.1:+88375195 None:intergenic
AAATTTCAAGAGCTTATGTT+AGG 0.384990 4.1:-88376101 MS.gene034240:CDS
ACCAAATTCTTTGGTACCTT+AGG 0.394330 4.1:+88375117 None:intergenic
ACTTCTTCATGAGCTCTATA+GGG 0.416190 4.1:+88377160 None:intergenic
AAAGAATTTGGTGGAACAAA+TGG 0.417985 4.1:-88375106 MS.gene034240:CDS
ATCATATATCAACACTTCCT+TGG 0.423806 4.1:-88377197 MS.gene034240:CDS
ATTGAGTCAACATCAGGTTC+TGG 0.432635 4.1:-88375276 MS.gene034240:CDS
ATGCTTGTTGCTACTTATGA+AGG 0.438838 4.1:-88375327 MS.gene034240:CDS
AGGACTGAAGCTTCTGATAC+AGG 0.439171 4.1:-88376081 MS.gene034240:CDS
CCTGATGTTGACTCAATTTG+AGG 0.440623 4.1:+88375282 None:intergenic
GAGCATTTGAAATAAGCTCT+TGG 0.448164 4.1:+88375732 None:intergenic
TAAGCACATCATCAAAGAAA+AGG 0.475073 4.1:-88376248 MS.gene034240:CDS
GACTCAATTTGAGGAGGTTG+AGG 0.489379 4.1:+88375291 None:intergenic
CTCATCTTTCACAGCAAAGT+TGG 0.495364 4.1:+88376967 None:intergenic
TTGAAATAAGCTCTTGGACA+AGG 0.504759 4.1:+88375738 None:intergenic
CCTCAAATTGAGTCAACATC+AGG 0.509933 4.1:-88375282 MS.gene034240:CDS
AATTTGATTGGAATTAACAA+TGG 0.518843 4.1:-88376195 MS.gene034240:CDS
TGTTTATTTATAGAAGAAAG+AGG 0.523025 4.1:-88377020 MS.gene034240:intron
TTGTGAAGGATGGATATCAT+TGG 0.540562 4.1:-88375794 MS.gene034240:CDS
CCGAACTGTGGTTCACGCTA+CGG 0.542637 4.1:+88375253 None:intergenic
AATTGGAGGAGGAATTGAGA+AGG 0.543648 4.1:-88376383 MS.gene034240:CDS
TGAAATAAGCTCTTGGACAA+GGG 0.544753 4.1:+88375739 None:intergenic
TCAGTCCATCGATGAATTGG+AGG 0.547121 4.1:-88376397 MS.gene034240:intron
GGGAATAATGTTGAGATCCA+AGG 0.551140 4.1:+88377180 None:intergenic
TAAGGTACCAAAGAATTTGG+TGG 0.555336 4.1:-88375115 MS.gene034240:CDS
CTCACCAGCAGCACCAAAAG+TGG 0.557520 4.1:-88375208 MS.gene034240:CDS
TTCCTCCTCCAATTCATCGA+TGG 0.559559 4.1:+88376392 None:intergenic
CTTAGAAAACAAGAAATTGG+TGG 0.564034 4.1:-88376355 MS.gene034240:CDS
ATTGGAGGAGGAATTGAGAA+GGG 0.565937 4.1:-88376382 MS.gene034240:CDS
TGCTTGTTGCTACTTATGAA+GGG 0.570383 4.1:-88375326 MS.gene034240:CDS
CCGTAGCGTGAACCACAGTT+CGG 0.575774 4.1:-88375253 MS.gene034240:CDS
GTCCATCGATGAATTGGAGG+AGG 0.577129 4.1:-88376394 MS.gene034240:CDS
TGAAGGATGGATATCATTGG+AGG 0.578215 4.1:-88375791 MS.gene034240:CDS
TTTCTTACACGATTCTTCAT+CGG 0.585904 4.1:+88376152 None:intergenic
AAGAATCGTGTAAGAAACCA+AGG 0.593473 4.1:-88376146 MS.gene034240:CDS
GAGGTGAGTGACGCCGAACA+AGG 0.597975 4.1:+88375228 None:intergenic
TTCATAAGTAGCAACAAGCA+TGG 0.599378 4.1:+88375329 None:intergenic
GCTTGTTGCTACTTATGAAG+GGG 0.612450 4.1:-88375325 MS.gene034240:CDS
AGCAAAGTTGGTCATCCCCA+AGG 0.617875 4.1:+88376979 None:intergenic
TTCATCGGTAGAGCTACTCT+CGG 0.622483 4.1:+88376167 None:intergenic
ACCAAGAAAAGATTCACCTA+AGG 0.630943 4.1:-88375133 MS.gene034240:CDS
TTATTTATAGAAGAAAGAGG+TGG 0.649581 4.1:-88377017 MS.gene034240:intron
GATGTTGACTCAATTTGAGG+AGG 0.679037 4.1:+88375285 None:intergenic
CCGAACAAGGTACCGAACTG+TGG 0.683983 4.1:+88375241 None:intergenic
CAACTTTGCTGTGAAAGATG+AGG 0.688649 4.1:-88376966 MS.gene034240:intron
ATTGGTGGAAATGCTCTCAG+TGG 0.691318 4.1:-88376340 MS.gene034240:CDS
AGAATCGTGTAAGAAACCAA+GGG 0.696308 4.1:-88376145 MS.gene034240:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGATTATTTATTTATTC+AGG - chr4.1:88376858-88376877 MS.gene034240:intron 10.0%
!! AATAACAATAGTAATTTGAT+TGG - chr4.1:88376027-88376046 MS.gene034240:intron 15.0%
!! AATCATCAATTATTAATTCA+AGG + chr4.1:88375683-88375702 None:intergenic 15.0%
!! ATCATCAATTATTAATTCAA+GGG + chr4.1:88375682-88375701 None:intergenic 15.0%
!!! ATATCAATTTTTATACTTAC+AGG + chr4.1:88375101-88375120 None:intergenic 15.0%
!! AATAGAGAAATATACATAAG+TGG + chr4.1:88375366-88375385 None:intergenic 20.0%
!! AATTTGATTGGAATTAACAA+TGG - chr4.1:88376039-88376058 MS.gene034240:intron 20.0%
!! TAAACAAGTTATAGCTTATA+TGG + chr4.1:88375540-88375559 None:intergenic 20.0%
!! TGTTTATTTATAGAAGAAAG+AGG - chr4.1:88375214-88375233 MS.gene034240:CDS 20.0%
!!! AAATTTGTTAAAGTCATGTT+TGG + chr4.1:88376611-88376630 None:intergenic 20.0%
!!! ATTGTTTTTTGTTTTCAGTT+CGG + chr4.1:88376303-88376322 None:intergenic 20.0%
! AAATTTCAAGAGCTTATGTT+AGG - chr4.1:88376133-88376152 MS.gene034240:CDS 25.0%
! AACCTTAGAAAACAAGAAAT+TGG - chr4.1:88375876-88375895 MS.gene034240:intron 25.0%
! AGCATTTGATAAACGTAATT+TGG + chr4.1:88376805-88376824 None:intergenic 25.0%
! ATAATCACCATTCAAACTAA+TGG + chr4.1:88375735-88375754 None:intergenic 25.0%
! ATAGTGCATATTTCAACAAT+TGG + chr4.1:88375453-88375472 None:intergenic 25.0%
! CTGAAAACAAAAAACAATGT+TGG - chr4.1:88376305-88376324 MS.gene034240:CDS 25.0%
! TGTAAGTTAAGTATCTTACA+AGG + chr4.1:88376179-88376198 None:intergenic 25.0%
! TTATTTATAGAAGAAAGAGG+TGG - chr4.1:88375217-88375236 MS.gene034240:CDS 25.0%
!! AACATAAGCTCTTGAAATTT+TGG + chr4.1:88376133-88376152 None:intergenic 25.0%
!! TTAATATTTTCTTCTTCCCT+TGG + chr4.1:88376108-88376127 None:intergenic 25.0%
!! TTTGATACCATTAGTTTGAA+TGG - chr4.1:88375725-88375744 MS.gene034240:CDS 25.0%
!! TTTTCTTGGTTCAATATTCT+TGG + chr4.1:88377091-88377110 None:intergenic 25.0%
!!! TGTTTTAAAAACCGAACAAA+CGG + chr4.1:88376352-88376371 None:intergenic 25.0%
!!! TTAAGAGTTTTTAGCCAAAA+GGG + chr4.1:88375785-88375804 None:intergenic 25.0%
!!! TTTAAGAGTTTTTAGCCAAA+AGG + chr4.1:88375786-88375805 None:intergenic 25.0%
!!! TTTTGTTTATCAGTCCATTA+TGG - chr4.1:88375754-88375773 MS.gene034240:CDS 25.0%
ATCATATATCAACACTTCCT+TGG - chr4.1:88375037-88375056 MS.gene034240:CDS 30.0%
ATTTGTTCCACCAAATTCTT+TGG + chr4.1:88377129-88377148 None:intergenic 30.0%
CTTAGAAAACAAGAAATTGG+TGG - chr4.1:88375879-88375898 MS.gene034240:intron 30.0%
CTTGTTTACATAAGCTATCT+TGG - chr4.1:88375552-88375571 MS.gene034240:intron 30.0%
GTCAGTAGATAAACTCAAAT+AGG - chr4.1:88375642-88375661 MS.gene034240:intron 30.0%
TAAGCACATCATCAAAGAAA+AGG - chr4.1:88375986-88376005 MS.gene034240:intron 30.0%
TTGTTGAATTATGCCATGTT+TGG - chr4.1:88375308-88375327 MS.gene034240:CDS 30.0%
TTTCTTACACGATTCTTCAT+CGG + chr4.1:88376085-88376104 None:intergenic 30.0%
! AAAGAATTTGGTGGAACAAA+TGG - chr4.1:88377128-88377147 MS.gene034240:intron 30.0%
!! ATCGCTTTTGCGTATATTTA+GGG + chr4.1:88376212-88376231 None:intergenic 30.0%
!! CAAAAAACAATGTTGGTTCA+CGG - chr4.1:88376312-88376331 MS.gene034240:CDS 30.0%
!!! CACCAATTTCTTGTTTTCTA+AGG + chr4.1:88375881-88375900 None:intergenic 30.0%
!!! CGATGTTTTAAAAACCAAAC+TGG - chr4.1:88376228-88376247 MS.gene034240:CDS 30.0%
AACTTCTTCATGAGCTCTAT+AGG + chr4.1:88375078-88375097 None:intergenic 35.0%
AAGAATCGTGTAAGAAACCA+AGG - chr4.1:88376088-88376107 MS.gene034240:CDS 35.0%
ACCAAATTCTTTGGTACCTT+AGG + chr4.1:88377120-88377139 None:intergenic 35.0%
ACCAAGAAAAGATTCACCTA+AGG - chr4.1:88377101-88377120 MS.gene034240:intron 35.0%
ACTTCTTCATGAGCTCTATA+GGG + chr4.1:88375077-88375096 None:intergenic 35.0%
AGAATCGTGTAAGAAACCAA+GGG - chr4.1:88376089-88376108 MS.gene034240:CDS 35.0%
ATTTCAGTCCATCGATGAAT+TGG - chr4.1:88375834-88375853 MS.gene034240:intron 35.0%
GGATATCATTGGAGGAAATA+TGG - chr4.1:88376451-88376470 MS.gene034240:intron 35.0%
TGAAATAAGCTCTTGGACAA+GGG + chr4.1:88376498-88376517 None:intergenic 35.0%
TTAAGCTGTCTATCCAAACA+TGG + chr4.1:88375324-88375343 None:intergenic 35.0%
TTCATAAGTAGCAACAAGCA+TGG + chr4.1:88376908-88376927 None:intergenic 35.0%
TTGAAATAAGCTCTTGGACA+AGG + chr4.1:88376499-88376518 None:intergenic 35.0%
TTGTGAAGGATGGATATCAT+TGG - chr4.1:88376440-88376459 MS.gene034240:intron 35.0%
! ACCTAAGGTACCAAAGAATT+TGG - chr4.1:88377116-88377135 MS.gene034240:intron 35.0%
! ACCTTAGGTGAATCTTTTCT+TGG + chr4.1:88377105-88377124 None:intergenic 35.0%
! AGCTTTACCTTCTTTTTGAC+AGG + chr4.1:88376544-88376563 None:intergenic 35.0%
! ATGCTTGTTGCTACTTATGA+AGG - chr4.1:88376907-88376926 MS.gene034240:intron 35.0%
! CACTTTGAGAAGTCATTTGA+TGG - chr4.1:88375933-88375952 MS.gene034240:intron 35.0%
! GAGCATTTGAAATAAGCTCT+TGG + chr4.1:88376505-88376524 None:intergenic 35.0%
! GCTTTACCTTCTTTTTGACA+GGG + chr4.1:88376543-88376562 None:intergenic 35.0%
! TAAGGTACCAAAGAATTTGG+TGG - chr4.1:88377119-88377138 MS.gene034240:intron 35.0%
! TCTGTGTTTTCAGATTGTGA+AGG - chr4.1:88376426-88376445 MS.gene034240:intron 35.0%
! TGCTTGTTGCTACTTATGAA+GGG - chr4.1:88376908-88376927 MS.gene034240:intron 35.0%
! TGTTTTCAGATTGTGAAGGA+TGG - chr4.1:88376430-88376449 MS.gene034240:intron 35.0%
!! AAAGCAACTTTTTCTCCTTG+GGG - chr4.1:88375240-88375259 MS.gene034240:CDS 35.0%
!! ACAAGTGCTGCTCTAAAATT+TGG + chr4.1:88377174-88377193 None:intergenic 35.0%
!! CATCGCTTTTGCGTATATTT+AGG + chr4.1:88376213-88376232 None:intergenic 35.0%
!! GAAAGCAACTTTTTCTCCTT+GGG - chr4.1:88375239-88375258 MS.gene034240:CDS 35.0%
!! TCGCTTTTGCGTATATTTAG+GGG + chr4.1:88376211-88376230 None:intergenic 35.0%
AAATCTTCGTAGTGCACGTT+TGG + chr4.1:88376831-88376850 None:intergenic 40.0%
AACTGGTTGAACCGTTTGTT+CGG - chr4.1:88376338-88376357 MS.gene034240:CDS 40.0%
AATTGGAGGAGGAATTGAGA+AGG - chr4.1:88375851-88375870 MS.gene034240:intron 40.0%
ACCATTAAAAACTCCCAGGA+TGG - chr4.1:88376258-88376277 MS.gene034240:CDS 40.0%
ATTGAGTCAACATCAGGTTC+TGG - chr4.1:88376958-88376977 MS.gene034240:intron 40.0%
ATTGGAGGAGGAATTGAGAA+GGG - chr4.1:88375852-88375871 MS.gene034240:intron 40.0%
CCAAAAGGGTCATTCCATAA+TGG + chr4.1:88375771-88375790 None:intergenic 40.0%
CCTCAAATTGAGTCAACATC+AGG - chr4.1:88376952-88376971 MS.gene034240:intron 40.0%
CTCATCTTTCACAGCAAAGT+TGG + chr4.1:88375270-88375289 None:intergenic 40.0%
GATGTGCTTACTTCTTTCTC+AGG + chr4.1:88375976-88375995 None:intergenic 40.0%
GGGAATAATGTTGAGATCCA+AGG + chr4.1:88375057-88375076 None:intergenic 40.0%
GGTAAGACGTAAAAGCAAAC+AGG + chr4.1:88376590-88376609 None:intergenic 40.0%
TAATGGTTCGATGTCCAGTT+TGG + chr4.1:88376245-88376264 None:intergenic 40.0%
TCGAACCATTAAAAACTCCC+AGG - chr4.1:88376254-88376273 MS.gene034240:CDS 40.0%
TGAAGGATGGATATCATTGG+AGG - chr4.1:88376443-88376462 MS.gene034240:intron 40.0%
TGCAGCCATTTCAGGAAAAT+TGG - chr4.1:88377194-88377213 MS.gene034240:CDS 40.0%
! CAACTTTGCTGTGAAAGATG+AGG - chr4.1:88375268-88375287 MS.gene034240:CDS 40.0%
! CCATTATGGAATGACCCTTT+TGG - chr4.1:88375768-88375787 MS.gene034240:CDS 40.0%
! GAGTCAAGTGTAACCACTTT+TGG + chr4.1:88377042-88377061 None:intergenic 40.0%
! GCTTGTTGCTACTTATGAAG+GGG - chr4.1:88376909-88376928 MS.gene034240:intron 40.0%
! GTGCACCAATTTTCCTGAAA+TGG + chr4.1:88377202-88377221 None:intergenic 40.0%
!! CCTGATGTTGACTCAATTTG+AGG + chr4.1:88376955-88376974 None:intergenic 40.0%
!! GATGTTGACTCAATTTGAGG+AGG + chr4.1:88376952-88376971 None:intergenic 40.0%
!! GGAAAGCAACTTTTTCTCCT+TGG - chr4.1:88375238-88375257 MS.gene034240:CDS 40.0%
!!! GAACAGTTTTAAGCCATCCT+GGG + chr4.1:88376274-88376293 None:intergenic 40.0%
!!! TGAACAGTTTTAAGCCATCC+TGG + chr4.1:88376275-88376294 None:intergenic 40.0%
AAGCTGCCCTGTCAAAAAGA+AGG - chr4.1:88376534-88376553 MS.gene034240:intron 45.0%
AGGACTGAAGCTTCTGATAC+AGG - chr4.1:88376153-88376172 MS.gene034240:CDS 45.0%
ATTGGTGGAAATGCTCTCAG+TGG - chr4.1:88375894-88375913 MS.gene034240:intron 45.0%
GACTCAATTTGAGGAGGTTG+AGG + chr4.1:88376946-88376965 None:intergenic 45.0%
TCAGTCCATCGATGAATTGG+AGG - chr4.1:88375837-88375856 MS.gene034240:intron 45.0%
TTCATCGGTAGAGCTACTCT+CGG + chr4.1:88376070-88376089 None:intergenic 45.0%
TTCCTCCTCCAATTCATCGA+TGG + chr4.1:88375845-88375864 None:intergenic 45.0%
! GCCATCCTGGGAGTTTTTAA+TGG + chr4.1:88376262-88376281 None:intergenic 45.0%
! TTCTTTTTGACAGGGCAGCT+TGG + chr4.1:88376535-88376554 None:intergenic 45.0%
CCACAGTTCGGTACCTTGTT+CGG - chr4.1:88376993-88377012 MS.gene034240:CDS 50.0%
GTCCATCGATGAATTGGAGG+AGG - chr4.1:88375840-88375859 MS.gene034240:intron 50.0%
! AGCAAAGTTGGTCATCCCCA+AGG + chr4.1:88375258-88375277 None:intergenic 50.0%
! GCACTTGTTGCAGCCATTTC+AGG - chr4.1:88377186-88377205 MS.gene034240:CDS 50.0%
!! ATGTTGGTTCACGGCTCAAC+TGG - chr4.1:88376321-88376340 MS.gene034240:CDS 50.0%
!!! GTAACCACTTTTGGTGCTGC+TGG + chr4.1:88377033-88377052 None:intergenic 50.0%
CCGAACTGTGGTTCACGCTA+CGG + chr4.1:88376984-88377003 None:intergenic 55.0%
CCGTAGCGTGAACCACAGTT+CGG - chr4.1:88376981-88377000 MS.gene034240:CDS 55.0%
CTCACCAGCAGCACCAAAAG+TGG - chr4.1:88377026-88377045 MS.gene034240:intron 55.0%
!! CCGAACAAGGTACCGAACTG+TGG + chr4.1:88376996-88377015 None:intergenic 55.0%
!!! CACTTTTGGTGCTGCTGGTG+AGG + chr4.1:88377028-88377047 None:intergenic 55.0%
GAGGTGAGTGACGCCGAACA+AGG + chr4.1:88377009-88377028 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 88375026 88377230 88375026 ID=MS.gene034240
chr4.1 mRNA 88375026 88377230 88375026 ID=MS.gene034240.t1;Parent=MS.gene034240
chr4.1 exon 88377156 88377230 88377156 ID=MS.gene034240.t1.exon1;Parent=MS.gene034240.t1
chr4.1 CDS 88377156 88377230 88377156 ID=cds.MS.gene034240.t1;Parent=MS.gene034240.t1
chr4.1 exon 88376967 88377029 88376967 ID=MS.gene034240.t1.exon2;Parent=MS.gene034240.t1
chr4.1 CDS 88376967 88377029 88376967 ID=cds.MS.gene034240.t1;Parent=MS.gene034240.t1
chr4.1 exon 88376077 88376415 88376077 ID=MS.gene034240.t1.exon3;Parent=MS.gene034240.t1
chr4.1 CDS 88376077 88376415 88376077 ID=cds.MS.gene034240.t1;Parent=MS.gene034240.t1
chr4.1 exon 88375701 88375817 88375701 ID=MS.gene034240.t1.exon4;Parent=MS.gene034240.t1
chr4.1 CDS 88375701 88375817 88375701 ID=cds.MS.gene034240.t1;Parent=MS.gene034240.t1
chr4.1 exon 88375026 88375376 88375026 ID=MS.gene034240.t1.exon5;Parent=MS.gene034240.t1
chr4.1 CDS 88375026 88375376 88375026 ID=cds.MS.gene034240.t1;Parent=MS.gene034240.t1
Gene Sequence

>MS.gene034240

ATGGATTGTTCATCATATATCAACACTTCCTTGGATCTCAACATTATTCCCTATAGAGCTCATGAAGAAGTTCCTGTAAGTATAAAAATTGATATATATATATATATATATATATATATATATATATATATATGCACTTTCACATGCTCTTGTTTGAAATGTTTTGCTCACAATATTTTCATTGTTTGTGTTTATTTATAGAAGAAAGAGGTGGAAAGCAACTTTTTCTCCTTGGGGATGACCAACTTTGCTGTGAAAGATGAGGTTAGTTTAGTTTAACAATTGTTGAATTATGCCATGTTTGGATAGACAGCTTAATTAGATGTTTATAGTAGAACCACTTATGTATATTTCTCTATTACAAAAAGATTGAAAAAGTTCAAATTGTTTTCATAAGTTATCTTAGAGACTTAGTTTAGTTTAGCCAATTGTTGAAATATGCACTATTTAGATAAAGATCTTAATTATGCACTATTTCTAACACTAAAGATGAAATAAAATCAAATTGTTTCCATATAAGCTATAACTTGTTTACATAAGCTATCTTGGAAAGCTTTTGAACATATATCATAAGTTGTTTTCTTAAGCTATCTAGAACAATTGCACAAGTGCTTATGTCAGTAGATAAACTCAAATAGGTCGATTCAAGCGTGCCCTTGAATTAATAATTGATGATTAATTGCACATAACTATTTCATATTTGATACCATTAGTTTGAATGGTGATTATTTTGTTTATCAGTCCATTATGGAATGACCCTTTTGGCTAAAAACTCTTAAATGATTCTAACATATGCTATTGATTTCAAATTTCAGTCCATCGATGAATTGGAGGAGGAATTGAGAAGGGTAACCTTAGAAAACAAGAAATTGGTGGAAATGCTCTCAGTGGTTTGTGAGAATTACAACACTTTGAGAAGTCATTTGATGGAATACATGAAGAGAAATCCTGAGAAAGAAGTAAGCACATCATCAAAGAAAAGGAAATCTGAAAGCAGCAATAATAACAATAGTAATTTGATTGGAATTAACAATGGAAATTCCGAGAGTAGCTCTACCGATGAAGAATCGTGTAAGAAACCAAGGGAAGAAGAAAATATTAAAGCCAAAATTTCAAGAGCTTATGTTAGGACTGAAGCTTCTGATACAGGCCTTGTAAGATACTTAACTTACATTTATTATTCCCCTAAATATACGCAAAAGCGATGTTTTAAAAACCAAACTGGACATCGAACCATTAAAAACTCCCAGGATGGCTTAAAACTGTTCAAATAACCGAACTGAAAACAAAAAACAATGTTGGTTCACGGCTCAACTGGTTGAACCGTTTGTTCGGTTTTTAAAACATTCTTGAAAATACTAAAGTTTGTATAAGTGTTGTAGTTTGACATGTTTTTTTTTTCTGTGTTTTCAGATTGTGAAGGATGGATATCATTGGAGGAAATATGGACAAAAAGTGACTAGAGATAACCCTTGTCCAAGAGCTTATTTCAAATGCTCTTTTGCTCCAAGCTGCCCTGTCAAAAAGAAGGTAAAGCTAAGTTCTAACTTTTGATTAAGTGCCTGTTTGCTTTTACGTCTTACCAAACATGACTTTAACAAATTTGATTTTGTCTCGAAGCATATGTTTGACTAGAAAAGATAAATAGTATCGTCTGCGTTGAGTTGAAAAATTTACACTACTTTTCATATCAAAAACACATCATATTCATAGTGAAAATCAAACATGATTAAGCTACTTTACTTCAATCTCGATGATAATGAATTAAATTCTATTCCAAATTACGTTTATCAAATGCTCATCCAAACGTGCACTACGAAGATTTTTCTCATTTTTGATTATTTATTTATTCAGGTGCAAAGAAGTGTTGATGATCAATCCATGCTTGTTGCTACTTATGAAGGGGAGCACAATCATCCTCAACCTCCTCAAATTGAGTCAACATCAGGTTCTGGCCGTAGCGTGAACCACAGTTCGGTACCTTGTTCGGCGTCACTCACCTCACCAGCAGCACCAAAAGTGGTTACACTTGACTCAACAACTTCTAAGAATAGTAAAGATTCCAAGAATATTGAACCAAGAAAAGATTCACCTAAGGTACCAAAGAATTTGGTGGAACAAATGGCTACTTCATTGACAACTGATCCAAATTTTAGAGCAGCACTTGTTGCAGCCATTTCAGGAAAATTGGTGCACAATAATTAA
Protein sequence

>MS.gene034240.t1

MDCSSYINTSLDLNIIPYRAHEEVPKKEVESNFFSLGMTNFAVKDESIDELEEELRRVTLENKKLVEMLSVVCENYNTLRSHLMEYMKRNPEKEVSTSSKKRKSESSNNNNSNLIGINNGNSESSSTDEESCKKPREEENIKAKISRAYVRTEASDTGLIVKDGYHWRKYGQKVTRDNPCPRAYFKCSFAPSCPVKKKVQRSVDDQSMLVATYEGEHNHPQPPQIESTSGSGRSVNHSSVPCSASLTSPAAPKVVTLDSTTSKNSKDSKNIEPRKDSPKVPKNLVEQMATSLTTDPNFRAALVAAISGKLVHNN