Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034299.t1 | XP_024630715.1 | 88.2 | 321 | 22 | 1 | 1 | 321 | 1 | 305 | 1.60E-109 | 406 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034299.t1 | Q9SZL8 | 33.9 | 168 | 107 | 3 | 153 | 317 | 77 | 243 | 2.5e-18 | 94.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034299.t1 | A0A396JNK0 | 86.6 | 277 | 21 | 1 | 1 | 277 | 1 | 261 | 2.2e-84 | 322.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene034299.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034299.t1 | MTR_1g070355 | 48.361 | 244 | 116 | 3 | 78 | 320 | 12 | 246 | 6.77e-74 | 238 |
| MS.gene034299.t1 | MTR_5g076070 | 37.156 | 218 | 116 | 4 | 102 | 314 | 18 | 219 | 3.66e-38 | 137 |
| MS.gene034299.t1 | MTR_6g022080 | 34.615 | 182 | 118 | 1 | 131 | 311 | 67 | 248 | 7.27e-35 | 127 |
| MS.gene034299.t1 | MTR_2g101460 | 32.653 | 196 | 116 | 4 | 90 | 284 | 3 | 183 | 2.14e-26 | 104 |
| MS.gene034299.t1 | MTR_2g101460 | 35.227 | 176 | 103 | 3 | 110 | 284 | 8 | 173 | 1.72e-25 | 101 |
| MS.gene034299.t1 | MTR_3g448650 | 33.824 | 136 | 80 | 4 | 90 | 223 | 30 | 157 | 3.47e-19 | 84.0 |
| MS.gene034299.t1 | MTR_0060s0090 | 46.341 | 82 | 43 | 1 | 152 | 232 | 59 | 140 | 6.47e-19 | 82.4 |
| MS.gene034299.t1 | MTR_7g446520 | 28.016 | 257 | 155 | 7 | 72 | 318 | 4 | 240 | 8.62e-19 | 85.9 |
| MS.gene034299.t1 | MTR_4g035820 | 31.638 | 177 | 108 | 6 | 149 | 317 | 76 | 247 | 1.38e-17 | 84.0 |
| MS.gene034299.t1 | MTR_7g028855 | 29.442 | 197 | 126 | 4 | 90 | 277 | 57 | 249 | 1.06e-15 | 77.8 |
| MS.gene034299.t1 | MTR_0402s0040 | 30.539 | 167 | 95 | 5 | 161 | 317 | 38 | 193 | 5.39e-15 | 75.9 |
| MS.gene034299.t1 | MTR_6g463250 | 36.697 | 109 | 55 | 1 | 124 | 232 | 63 | 157 | 1.15e-14 | 71.2 |
| MS.gene034299.t1 | MTR_6g053140 | 33.058 | 121 | 72 | 3 | 131 | 251 | 85 | 196 | 1.15e-14 | 72.4 |
| MS.gene034299.t1 | MTR_1g052260 | 35.922 | 103 | 65 | 1 | 129 | 230 | 56 | 158 | 1.82e-13 | 67.4 |
| MS.gene034299.t1 | MTR_2g098880 | 38.835 | 103 | 60 | 3 | 153 | 253 | 65 | 166 | 2.61e-13 | 68.9 |
| MS.gene034299.t1 | MTR_2g098880 | 38.835 | 103 | 60 | 3 | 153 | 253 | 77 | 178 | 3.72e-13 | 68.9 |
| MS.gene034299.t1 | MTR_6g051425 | 27.461 | 193 | 117 | 6 | 125 | 310 | 5 | 181 | 1.05e-11 | 65.5 |
| MS.gene034299.t1 | MTR_0604s0020 | 38.356 | 73 | 44 | 1 | 160 | 231 | 3 | 75 | 1.58e-11 | 59.7 |
| MS.gene034299.t1 | MTR_4g050510 | 28.448 | 116 | 70 | 1 | 160 | 275 | 89 | 191 | 2.05e-11 | 62.8 |
| MS.gene034299.t1 | MTR_8g066350 | 31.746 | 126 | 67 | 2 | 131 | 255 | 61 | 168 | 3.68e-11 | 61.2 |
| MS.gene034299.t1 | MTR_2g098920 | 40.000 | 100 | 54 | 4 | 154 | 251 | 85 | 180 | 8.76e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034299.t1 | AT4G38180 | 33.929 | 168 | 107 | 3 | 153 | 317 | 77 | 243 | 1.75e-20 | 92.8 |
| MS.gene034299.t1 | AT1G10240 | 31.884 | 138 | 78 | 4 | 155 | 282 | 54 | 185 | 1.40e-14 | 74.7 |
| MS.gene034299.t1 | AT1G10240 | 31.884 | 138 | 78 | 4 | 155 | 282 | 54 | 185 | 1.40e-14 | 74.7 |
| MS.gene034299.t1 | AT5G28530 | 28.105 | 153 | 107 | 2 | 161 | 310 | 67 | 219 | 6.95e-13 | 69.7 |
| MS.gene034299.t1 | AT5G28530 | 28.105 | 153 | 107 | 2 | 161 | 310 | 67 | 219 | 6.95e-13 | 69.7 |
| MS.gene034299.t1 | AT5G28530 | 28.105 | 153 | 107 | 2 | 161 | 310 | 67 | 219 | 7.29e-13 | 69.7 |
| MS.gene034299.t1 | AT5G28530 | 28.105 | 153 | 107 | 2 | 161 | 310 | 67 | 219 | 1.12e-12 | 68.9 |
| MS.gene034299.t1 | AT5G28530 | 28.105 | 153 | 107 | 2 | 161 | 310 | 67 | 219 | 1.40e-12 | 68.6 |
| MS.gene034299.t1 | AT2G43280 | 30.357 | 168 | 99 | 7 | 153 | 315 | 26 | 180 | 2.21e-11 | 62.8 |
| MS.gene034299.t1 | AT3G59470 | 34.653 | 101 | 62 | 3 | 154 | 253 | 87 | 184 | 7.32e-11 | 62.0 |
| MS.gene034299.t1 | AT3G59470 | 34.653 | 101 | 62 | 3 | 154 | 253 | 75 | 172 | 8.71e-11 | 61.6 |
| MS.gene034299.t1 | AT3G59470 | 34.653 | 101 | 62 | 3 | 154 | 253 | 75 | 172 | 8.71e-11 | 61.6 |
Find 79 sgRNAs with CRISPR-Local
Find 81 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATTGGACCTGACTGGTTT+AGG | 0.190644 | 4.3:-89302985 | MS.gene034299:CDS |
| CATTGGACCTGACTGGTTTA+GGG | 0.232440 | 4.3:-89302984 | MS.gene034299:CDS |
| GCAGGAGGATATGATAAAAT+TGG | 0.269500 | 4.3:-89302517 | MS.gene034299:CDS |
| TGACATCCACATCGAGTATA+AGG | 0.341168 | 4.3:+89302751 | None:intergenic |
| GATATGATAAAATTGGTTTC+CGG | 0.348455 | 4.3:-89302510 | MS.gene034299:CDS |
| TGGATGTCAAGCTATGTTTC+GGG | 0.355654 | 4.3:-89302737 | MS.gene034299:CDS |
| TTTGTAAGGAGAATTGAGTT+TGG | 0.379815 | 4.3:-89302955 | MS.gene034299:CDS |
| CTTTATCAACTTGGATATGT+TGG | 0.394415 | 4.3:+89303022 | None:intergenic |
| GTGGATGTCAAGCTATGTTT+CGG | 0.399890 | 4.3:-89302738 | MS.gene034299:CDS |
| CAGACATTGGAGAAGATGTT+AGG | 0.400502 | 4.3:-89303341 | MS.gene034299:CDS |
| AATGAAGCATATATGCGATT+AGG | 0.401699 | 4.3:+89302550 | None:intergenic |
| TTTGCCATAGAGAAGGATAT+AGG | 0.402899 | 4.3:-89302816 | MS.gene034299:CDS |
| GATTGTAGTCAATTTATTGA+TGG | 0.404804 | 4.3:-89303381 | MS.gene034299:CDS |
| AGCTGATGACATTGCGGCAT+TGG | 0.405375 | 4.3:-89303001 | MS.gene034299:CDS |
| GTTTAGGGGCTCTATTTGTA+AGG | 0.428054 | 4.3:-89302969 | MS.gene034299:CDS |
| GTTCACCCCTTCATCATCTC+CGG | 0.429393 | 4.3:+89303218 | None:intergenic |
| AAGTTGCTATATTGCAAATC+AGG | 0.434305 | 4.3:-89302862 | MS.gene034299:CDS |
| GATGAAGAAGTAGTAAACTA+TGG | 0.439397 | 4.3:-89303168 | MS.gene034299:CDS |
| AAGATGGAAGTGAGGCAGAA+GGG | 0.440842 | 4.3:-89303089 | MS.gene034299:CDS |
| GAGGCAGAAGGGGTAGACTA+TGG | 0.449884 | 4.3:-89303078 | MS.gene034299:CDS |
| AATGGTGAGTTTGAAGAAGA+TGG | 0.452329 | 4.3:-89303255 | MS.gene034299:CDS |
| TGTCATCAGCTTTATCAACT+TGG | 0.452845 | 4.3:+89303013 | None:intergenic |
| GAAGATGGAAGTGAGGCAGA+AGG | 0.466220 | 4.3:-89303090 | MS.gene034299:CDS |
| CCACATCGAGTATAAGGTCT+TGG | 0.471265 | 4.3:+89302757 | None:intergenic |
| TATGAGTTCTATAAATCCTA+TGG | 0.471575 | 4.3:-89302916 | MS.gene034299:CDS |
| AGATGTTAGGCTTGAAGAGG+GGG | 0.483778 | 4.3:-89303328 | MS.gene034299:CDS |
| TTTGAAGAAGATGGAGGTAG+TGG | 0.488205 | 4.3:-89303246 | MS.gene034299:CDS |
| GATGATGAAGGGGTGAACTA+TGG | 0.489858 | 4.3:-89303213 | MS.gene034299:CDS |
| GAAGATGTTAGGCTTGAAGA+GGG | 0.494052 | 4.3:-89303330 | MS.gene034299:CDS |
| GATTATACAGATCTTTCCTC+CGG | 0.496017 | 4.3:+89302491 | None:intergenic |
| AGTGGTAGACTCTGGTGACT+TGG | 0.508493 | 4.3:-89303115 | MS.gene034299:CDS |
| TCTGGTGACTTGGAAGAAGA+TGG | 0.510231 | 4.3:-89303105 | MS.gene034299:CDS |
| ATTGATGGAAGTCATGAAGA+AGG | 0.512557 | 4.3:-89303366 | MS.gene034299:CDS |
| AATGGTAACATGGAAAATGA+TGG | 0.512774 | 4.3:-89303300 | MS.gene034299:CDS |
| CATGAAGAAGGGGCAGACAT+TGG | 0.514562 | 4.3:-89303354 | MS.gene034299:CDS |
| AGATGGAAGTGATGAAGAAG+TGG | 0.515597 | 4.3:-89303133 | MS.gene034299:CDS |
| AGATGGAAGTGAGGCAGAAG+GGG | 0.516008 | 4.3:-89303088 | MS.gene034299:CDS |
| TTCACCCCTTCATCATCTCC+GGG | 0.522079 | 4.3:+89303219 | None:intergenic |
| GAATCCATTCGCTCTTCCAT+AGG | 0.524771 | 4.3:+89302900 | None:intergenic |
| TTGATGGAAGTCATGAAGAA+GGG | 0.530018 | 4.3:-89303365 | MS.gene034299:CDS |
| TATGGTGACATGGAAGAAGA+TGG | 0.530998 | 4.3:-89303195 | MS.gene034299:CDS |
| TATGGTGACATGGAAGAAGA+TGG | 0.533808 | 4.3:-89303150 | MS.gene034299:CDS |
| AAATCCTATGGAAGAGCGAA+TGG | 0.535778 | 4.3:-89302904 | MS.gene034299:CDS |
| TATGGTGACATGGAAGAAGA+TGG | 0.540056 | 4.3:-89303060 | MS.gene034299:CDS |
| AAGATGTTAGGCTTGAAGAG+GGG | 0.541806 | 4.3:-89303329 | MS.gene034299:CDS |
| GGTCAACCCGGAGATGATGA+AGG | 0.544699 | 4.3:-89303225 | MS.gene034299:CDS |
| ATACTAGCTCATGGTTGTGC+TGG | 0.547334 | 4.3:+89302665 | None:intergenic |
| GCTTCATTTGCAAATCAAGC+AGG | 0.558899 | 4.3:-89302535 | MS.gene034299:CDS |
| AGAAGATGTTAGGCTTGAAG+AGG | 0.559618 | 4.3:-89303331 | MS.gene034299:CDS |
| ACATTTGTTTGCCATAGAGA+AGG | 0.560252 | 4.3:-89302823 | MS.gene034299:CDS |
| ATTGCGGCATTGGACCTGAC+TGG | 0.574500 | 4.3:-89302991 | MS.gene034299:CDS |
| CAACCATGAGCTAGTATCGC+AGG | 0.574912 | 4.3:-89302659 | MS.gene034299:CDS |
| AGAACTCATATGCAATCTCT+AGG | 0.576256 | 4.3:+89302929 | None:intergenic |
| ATAGAGCCCCTAAACCAGTC+AGG | 0.576641 | 4.3:+89302977 | None:intergenic |
| GTCAACCCGGAGATGATGAA+GGG | 0.585763 | 4.3:-89303224 | MS.gene034299:CDS |
| ATTGGACCTGACTGGTTTAG+GGG | 0.585884 | 4.3:-89302983 | MS.gene034299:CDS |
| GGTGAGTTTGAAGAAGATGG+AGG | 0.588802 | 4.3:-89303252 | MS.gene034299:CDS |
| TAAACAGTTTCACAAATCGC+TGG | 0.593821 | 4.3:-89302708 | MS.gene034299:CDS |
| ATGATAAAATTGGTTTCCGG+AGG | 0.604330 | 4.3:-89302507 | MS.gene034299:CDS |
| GATGGAAGTGGTTACGAAAG+CGG | 0.618497 | 4.3:-89303282 | MS.gene034299:CDS |
| GTTCCTGCGATACTAGCTCA+TGG | 0.621145 | 4.3:+89302656 | None:intergenic |
| TGATGGAAGTCATGAAGAAG+GGG | 0.621331 | 4.3:-89303364 | MS.gene034299:CDS |
| CTTGGAAGAAGATGGAAGTG+AGG | 0.622092 | 4.3:-89303097 | MS.gene034299:CDS |
| GGTTACGAAAGCGGAGACAA+TGG | 0.624816 | 4.3:-89303273 | MS.gene034299:CDS |
| CCAAGACCTTATACTCGATG+TGG | 0.624870 | 4.3:-89302757 | MS.gene034299:CDS |
| AGTAGTAAACTATGGTGACA+TGG | 0.626648 | 4.3:-89303160 | MS.gene034299:CDS |
| TCATTTGCAAATCAAGCAGG+AGG | 0.627756 | 4.3:-89302532 | MS.gene034299:CDS |
| AATGGATTCACAGTTCGCAA+AGG | 0.645718 | 4.3:-89302886 | MS.gene034299:CDS |
| GATGGAGGTAGTGGTCAACC+CGG | 0.647374 | 4.3:-89303237 | MS.gene034299:CDS |
| AGGGGTAGACTATGGTGACA+TGG | 0.659480 | 4.3:-89303070 | MS.gene034299:CDS |
| ATAATCAATTAGCGAAACAA+CGG | 0.668690 | 4.3:-89302474 | MS.gene034299:CDS |
| AACATGGAAAATGATGGAAG+TGG | 0.670459 | 4.3:-89303294 | MS.gene034299:CDS |
| CTGAGGCGAATAGAAAGCGT+CGG | 0.671105 | 4.3:-89302780 | MS.gene034299:CDS |
| GATGAAGAAGTGGTAGACTC+TGG | 0.679358 | 4.3:-89303123 | MS.gene034299:CDS |
| TGATAAAGCTGATGACATTG+CGG | 0.680359 | 4.3:-89303007 | MS.gene034299:CDS |
| TAGGAAAATGAAAATAACTG+AGG | 0.682026 | 4.3:-89302797 | MS.gene034299:CDS |
| CTAGTATCGCAGGAACATTG+TGG | 0.682923 | 4.3:-89302649 | MS.gene034299:CDS |
| AGGGGTGAACTATGGTGACA+TGG | 0.685845 | 4.3:-89303205 | MS.gene034299:CDS |
| TCAACCCGGAGATGATGAAG+GGG | 0.696725 | 4.3:-89303223 | MS.gene034299:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGAACAATATGTTAAAAAG+TGG | - | chr4.3:89303275-89303294 | MS.gene034299:CDS | 20.0% |
| ! | ATAATCAATTAGCGAAACAA+CGG | - | chr4.3:89303381-89303400 | MS.gene034299:CDS | 25.0% |
| ! | GATTGTAGTCAATTTATTGA+TGG | - | chr4.3:89302474-89302493 | MS.gene034299:CDS | 25.0% |
| ! | TAGGAAAATGAAAATAACTG+AGG | - | chr4.3:89303058-89303077 | MS.gene034299:CDS | 25.0% |
| ! | TATGAGTTCTATAAATCCTA+TGG | - | chr4.3:89302939-89302958 | MS.gene034299:CDS | 25.0% |
| !! | GATATGATAAAATTGGTTTC+CGG | - | chr4.3:89303345-89303364 | MS.gene034299:CDS | 25.0% |
| AAGTTGCTATATTGCAAATC+AGG | - | chr4.3:89302993-89303012 | MS.gene034299:CDS | 30.0% | |
| AATGAAGCATATATGCGATT+AGG | + | chr4.3:89303308-89303327 | None:intergenic | 30.0% | |
| AATGGTAACATGGAAAATGA+TGG | - | chr4.3:89302555-89302574 | MS.gene034299:CDS | 30.0% | |
| CTTTATCAACTTGGATATGT+TGG | + | chr4.3:89302836-89302855 | None:intergenic | 30.0% | |
| GATGAAGAAGTAGTAAACTA+TGG | - | chr4.3:89302687-89302706 | MS.gene034299:CDS | 30.0% | |
| TTTGTAAGGAGAATTGAGTT+TGG | - | chr4.3:89302900-89302919 | MS.gene034299:CDS | 30.0% | |
| ! | TTTTCCTATATCCTTCTCTA+TGG | + | chr4.3:89303046-89303065 | None:intergenic | 30.0% |
| AATGGTGAGTTTGAAGAAGA+TGG | - | chr4.3:89302600-89302619 | MS.gene034299:CDS | 35.0% | |
| ACATTTGTTTGCCATAGAGA+AGG | - | chr4.3:89303032-89303051 | MS.gene034299:CDS | 35.0% | |
| AGAACTCATATGCAATCTCT+AGG | + | chr4.3:89302929-89302948 | None:intergenic | 35.0% | |
| AGTAGTAAACTATGGTGACA+TGG | - | chr4.3:89302695-89302714 | MS.gene034299:CDS | 35.0% | |
| ATTGATGGAAGTCATGAAGA+AGG | - | chr4.3:89302489-89302508 | MS.gene034299:CDS | 35.0% | |
| GATTATACAGATCTTTCCTC+CGG | + | chr4.3:89303367-89303386 | None:intergenic | 35.0% | |
| GCAGGAGGATATGATAAAAT+TGG | - | chr4.3:89303338-89303357 | MS.gene034299:CDS | 35.0% | |
| TAAACAGTTTCACAAATCGC+TGG | - | chr4.3:89303147-89303166 | MS.gene034299:CDS | 35.0% | |
| TGATAAAGCTGATGACATTG+CGG | - | chr4.3:89302848-89302867 | MS.gene034299:CDS | 35.0% | |
| TTGATGGAAGTCATGAAGAA+GGG | - | chr4.3:89302490-89302509 | MS.gene034299:CDS | 35.0% | |
| TTTGCCATAGAGAAGGATAT+AGG | - | chr4.3:89303039-89303058 | MS.gene034299:CDS | 35.0% | |
| ! | AACATGGAAAATGATGGAAG+TGG | - | chr4.3:89302561-89302580 | MS.gene034299:CDS | 35.0% |
| ! | ATGATAAAATTGGTTTCCGG+AGG | - | chr4.3:89303348-89303367 | MS.gene034299:CDS | 35.0% |
| ! | TGTCATCAGCTTTATCAACT+TGG | + | chr4.3:89302845-89302864 | None:intergenic | 35.0% |
| AAATCCTATGGAAGAGCGAA+TGG | - | chr4.3:89302951-89302970 | MS.gene034299:CDS | 40.0% | |
| AAGATGTTAGGCTTGAAGAG+GGG | - | chr4.3:89302526-89302545 | MS.gene034299:CDS | 40.0% | |
| AGAAGATGTTAGGCTTGAAG+AGG | - | chr4.3:89302524-89302543 | MS.gene034299:CDS | 40.0% | |
| AGATGGAAGTGATGAAGAAG+TGG | - | chr4.3:89302722-89302741 | MS.gene034299:CDS | 40.0% | |
| CAGACATTGGAGAAGATGTT+AGG | - | chr4.3:89302514-89302533 | MS.gene034299:CDS | 40.0% | |
| GAAGATGTTAGGCTTGAAGA+GGG | - | chr4.3:89302525-89302544 | MS.gene034299:CDS | 40.0% | |
| GCTTCATTTGCAAATCAAGC+AGG | - | chr4.3:89303320-89303339 | MS.gene034299:CDS | 40.0% | |
| GTGGATGTCAAGCTATGTTT+CGG | - | chr4.3:89303117-89303136 | MS.gene034299:CDS | 40.0% | |
| GTTTAGGGGCTCTATTTGTA+AGG | - | chr4.3:89302886-89302905 | MS.gene034299:CDS | 40.0% | |
| TATGGTGACATGGAAGAAGA+TGG | - | chr4.3:89302660-89302679 | MS.gene034299:CDS | 40.0% | |
| TCATTTGCAAATCAAGCAGG+AGG | - | chr4.3:89303323-89303342 | MS.gene034299:CDS | 40.0% | |
| TGACATCCACATCGAGTATA+AGG | + | chr4.3:89303107-89303126 | None:intergenic | 40.0% | |
| TGATGGAAGTCATGAAGAAG+GGG | - | chr4.3:89302491-89302510 | MS.gene034299:CDS | 40.0% | |
| TGGATGTCAAGCTATGTTTC+GGG | - | chr4.3:89303118-89303137 | MS.gene034299:CDS | 40.0% | |
| TTTGAAGAAGATGGAGGTAG+TGG | - | chr4.3:89302609-89302628 | MS.gene034299:CDS | 40.0% | |
| ! | AATGGATTCACAGTTCGCAA+AGG | - | chr4.3:89302969-89302988 | MS.gene034299:CDS | 40.0% |
| AAGATGGAAGTGAGGCAGAA+GGG | - | chr4.3:89302766-89302785 | MS.gene034299:CDS | 45.0% | |
| AGATGTTAGGCTTGAAGAGG+GGG | - | chr4.3:89302527-89302546 | MS.gene034299:CDS | 45.0% | |
| ATACTAGCTCATGGTTGTGC+TGG | + | chr4.3:89303193-89303212 | None:intergenic | 45.0% | |
| CCAAGACCTTATACTCGATG+TGG | - | chr4.3:89303098-89303117 | MS.gene034299:CDS | 45.0% | |
| CCACATCGAGTATAAGGTCT+TGG | + | chr4.3:89303101-89303120 | None:intergenic | 45.0% | |
| CTAGTATCGCAGGAACATTG+TGG | - | chr4.3:89303206-89303225 | MS.gene034299:CDS | 45.0% | |
| CTTGAAGAGGGGGAATACAA+TGG | - | chr4.3:89302537-89302556 | MS.gene034299:CDS | 45.0% | |
| CTTGGAAGAAGATGGAAGTG+AGG | - | chr4.3:89302758-89302777 | MS.gene034299:CDS | 45.0% | |
| GAATCCATTCGCTCTTCCAT+AGG | + | chr4.3:89302958-89302977 | None:intergenic | 45.0% | |
| GATGAAGAAGTGGTAGACTC+TGG | - | chr4.3:89302732-89302751 | MS.gene034299:CDS | 45.0% | |
| GATGATGAAGGGGTGAACTA+TGG | - | chr4.3:89302642-89302661 | MS.gene034299:CDS | 45.0% | |
| GATGGAAGTGGTTACGAAAG+CGG | - | chr4.3:89302573-89302592 | MS.gene034299:CDS | 45.0% | |
| GGGGGAATACAATGGTAACA+TGG | - | chr4.3:89302545-89302564 | MS.gene034299:CDS | 45.0% | |
| GGTGAGTTTGAAGAAGATGG+AGG | - | chr4.3:89302603-89302622 | MS.gene034299:CDS | 45.0% | |
| ! | TCTGGTGACTTGGAAGAAGA+TGG | - | chr4.3:89302750-89302769 | MS.gene034299:CDS | 45.0% |
| !! | ATTGGACCTGACTGGTTTAG+GGG | - | chr4.3:89302872-89302891 | MS.gene034299:CDS | 45.0% |
| !! | CATTGGACCTGACTGGTTTA+GGG | - | chr4.3:89302871-89302890 | MS.gene034299:CDS | 45.0% |
| AGATGGAAGTGAGGCAGAAG+GGG | - | chr4.3:89302767-89302786 | MS.gene034299:CDS | 50.0% | |
| AGCTGATGACATTGCGGCAT+TGG | - | chr4.3:89302854-89302873 | MS.gene034299:CDS | 50.0% | |
| AGGGGTAGACTATGGTGACA+TGG | - | chr4.3:89302785-89302804 | MS.gene034299:CDS | 50.0% | |
| AGGGGTGAACTATGGTGACA+TGG | - | chr4.3:89302650-89302669 | MS.gene034299:CDS | 50.0% | |
| AGTGGTAGACTCTGGTGACT+TGG | - | chr4.3:89302740-89302759 | MS.gene034299:CDS | 50.0% | |
| ATAGAGCCCCTAAACCAGTC+AGG | + | chr4.3:89302881-89302900 | None:intergenic | 50.0% | |
| CAACCATGAGCTAGTATCGC+AGG | - | chr4.3:89303196-89303215 | MS.gene034299:CDS | 50.0% | |
| CATGAAGAAGGGGCAGACAT+TGG | - | chr4.3:89302501-89302520 | MS.gene034299:CDS | 50.0% | |
| GAAGATGGAAGTGAGGCAGA+AGG | - | chr4.3:89302765-89302784 | MS.gene034299:CDS | 50.0% | |
| GGTTACGAAAGCGGAGACAA+TGG | - | chr4.3:89302582-89302601 | MS.gene034299:CDS | 50.0% | |
| GTCAACCCGGAGATGATGAA+GGG | - | chr4.3:89302631-89302650 | MS.gene034299:CDS | 50.0% | |
| GTTCACCCCTTCATCATCTC+CGG | + | chr4.3:89302640-89302659 | None:intergenic | 50.0% | |
| GTTCCTGCGATACTAGCTCA+TGG | + | chr4.3:89303202-89303221 | None:intergenic | 50.0% | |
| TCAACCCGGAGATGATGAAG+GGG | - | chr4.3:89302632-89302651 | MS.gene034299:CDS | 50.0% | |
| TTCACCCCTTCATCATCTCC+GGG | + | chr4.3:89302639-89302658 | None:intergenic | 50.0% | |
| ! | CTGAGGCGAATAGAAAGCGT+CGG | - | chr4.3:89303075-89303094 | MS.gene034299:CDS | 50.0% |
| !! | GCATTGGACCTGACTGGTTT+AGG | - | chr4.3:89302870-89302889 | MS.gene034299:CDS | 50.0% |
| GAGGCAGAAGGGGTAGACTA+TGG | - | chr4.3:89302777-89302796 | MS.gene034299:CDS | 55.0% | |
| GGTCAACCCGGAGATGATGA+AGG | - | chr4.3:89302630-89302649 | MS.gene034299:CDS | 55.0% | |
| ! | ATTGCGGCATTGGACCTGAC+TGG | - | chr4.3:89302864-89302883 | MS.gene034299:CDS | 55.0% |
| ! | GATGGAGGTAGTGGTCAACC+CGG | - | chr4.3:89302618-89302637 | MS.gene034299:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 89302456 | 89303421 | 89302456 | ID=MS.gene034299 |
| chr4.3 | mRNA | 89302456 | 89303421 | 89302456 | ID=MS.gene034299.t1;Parent=MS.gene034299 |
| chr4.3 | exon | 89302456 | 89303421 | 89302456 | ID=MS.gene034299.t1.exon1;Parent=MS.gene034299.t1 |
| chr4.3 | CDS | 89302456 | 89303421 | 89302456 | ID=cds.MS.gene034299.t1;Parent=MS.gene034299.t1 |
| Gene Sequence |
| Protein sequence |
