AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene034458

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene034458.t1 MTR_2g086420 98.189 497 6 2 1 494 1 497 0.0 1004
MS.gene034458.t1 MTR_2g086420 97.988 497 6 3 1 494 1 496 0.0 997
MS.gene034458.t1 MTR_4g053250 66.142 508 139 8 1 494 1 489 0.0 658
MS.gene034458.t1 MTR_8g040120 63.194 288 96 3 189 466 179 466 5.64e-125 373
MS.gene034458.t1 MTR_7g089800 59.934 302 110 3 175 466 123 423 3.92e-123 366
MS.gene034458.t1 MTR_7g089800 59.934 302 110 3 175 466 152 452 1.52e-122 366
MS.gene034458.t1 MTR_7g092750 43.277 476 184 12 21 466 44 463 2.78e-120 360
MS.gene034458.t1 MTR_7g092750 54.259 317 125 3 170 466 46 362 7.26e-120 356
MS.gene034458.t1 MTR_3g087940 55.137 292 119 4 184 466 73 361 1.50e-109 330
MS.gene034458.t1 MTR_5g054900 54.514 288 121 2 189 466 66 353 3.02e-105 318
MS.gene034458.t1 MTR_5g054900 54.514 288 121 2 189 466 147 434 2.84e-104 318
MS.gene034458.t1 MTR_5g054900 53.819 288 119 3 189 466 66 349 2.44e-101 308
MS.gene034458.t1 MTR_7g092750 39.916 476 174 13 21 466 44 437 4.54e-101 310
MS.gene034458.t1 MTR_5g054900 53.819 288 119 3 189 466 177 460 3.73e-100 309
MS.gene034458.t1 MTR_0126s0080 42.206 417 164 7 36 418 85 458 1.26e-98 305
MS.gene034458.t1 MTR_1g111310 47.896 309 146 3 169 466 403 707 1.17e-95 305
MS.gene034458.t1 MTR_1g111310 47.475 297 145 3 169 460 36 326 8.46e-85 276
MS.gene034458.t1 MTR_5g060950 49.518 311 146 4 163 463 37 346 5.70e-93 287
MS.gene034458.t1 MTR_8g091650 51.579 285 126 4 191 466 75 356 1.02e-90 281
MS.gene034458.t1 MTR_8g091650 51.773 282 124 4 194 466 5 283 1.17e-90 278
MS.gene034458.t1 MTR_8g091650 51.579 285 126 4 191 466 111 392 5.72e-90 280
MS.gene034458.t1 MTR_3g073560 50.173 289 129 3 191 468 65 349 4.63e-87 279
MS.gene034458.t1 MTR_3g044820 46.774 186 83 4 169 342 27 208 6.80e-55 183
MS.gene034458.t1 MTR_1g090370 32.828 198 112 5 267 459 47 228 6.44e-23 97.4
MS.gene034458.t1 MTR_1g111320 60.274 73 23 1 191 257 146 218 5.93e-18 83.2
MS.gene034458.t1 MTR_8g094690 27.615 239 124 6 258 453 15 247 3.51e-16 79.0
MS.gene034458.t1 MTR_7g068860 24.885 217 143 3 256 456 7 219 1.73e-14 73.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene034458.t1 AT1G08320 59.562 502 174 9 1 494 1 481 0.0 582
MS.gene034458.t1 AT1G08320 59.562 502 174 9 1 494 1 481 0.0 582
MS.gene034458.t1 AT1G08320 59.562 502 174 9 1 494 1 481 0.0 582
MS.gene034458.t1 AT1G08320 66.292 356 118 1 139 494 4 357 1.22e-176 500
MS.gene034458.t1 AT1G08320 66.292 356 118 1 139 494 4 357 1.22e-176 500
MS.gene034458.t1 AT5G06839 45.860 471 183 11 35 467 23 459 8.61e-121 362
MS.gene034458.t1 AT5G06839 57.911 316 109 4 176 467 101 416 1.69e-117 352
MS.gene034458.t1 AT3G12250 55.488 328 127 4 151 466 10 330 2.90e-117 348
MS.gene034458.t1 AT3G12250 55.488 328 127 4 151 466 10 330 2.90e-117 348
MS.gene034458.t1 AT3G12250 55.488 328 127 4 151 466 10 330 2.90e-117 348
MS.gene034458.t1 AT3G12250 55.488 328 127 4 151 466 10 330 2.90e-117 348
MS.gene034458.t1 AT3G12250 58.416 303 108 4 179 466 4 303 2.30e-116 345
MS.gene034458.t1 AT3G12250 58.416 303 108 4 179 466 25 324 3.01e-116 345
MS.gene034458.t1 AT5G06839 57.729 317 109 5 176 467 101 417 5.00e-116 348
MS.gene034458.t1 AT5G06950 57.756 303 110 4 179 466 31 330 9.06e-116 344
MS.gene034458.t1 AT5G06950 57.756 303 110 4 179 466 31 330 9.06e-116 344
MS.gene034458.t1 AT5G06950 57.756 303 110 4 179 466 31 330 9.06e-116 344
MS.gene034458.t1 AT5G06950 57.756 303 110 4 179 466 31 330 9.06e-116 344
MS.gene034458.t1 AT5G06950 57.756 303 110 4 179 466 31 330 9.06e-116 344
MS.gene034458.t1 AT3G12250 58.333 300 113 3 179 466 56 355 6.60e-115 343
MS.gene034458.t1 AT5G06960 59.375 288 108 2 188 466 43 330 1.75e-113 338
MS.gene034458.t1 AT5G06960 59.375 288 108 2 188 466 43 330 1.75e-113 338
MS.gene034458.t1 AT5G06960 59.375 288 108 2 188 466 23 310 2.97e-113 337
MS.gene034458.t1 AT1G22070 56.401 289 117 3 188 467 95 383 3.38e-103 314
MS.gene034458.t1 AT1G77920 49.408 338 140 5 132 466 57 366 6.95e-103 313
MS.gene034458.t1 AT5G10030 53.559 295 124 4 181 466 72 362 4.81e-101 308
MS.gene034458.t1 AT5G10030 53.559 295 124 4 181 466 72 362 4.81e-101 308
MS.gene034458.t1 AT5G10030 53.559 295 124 4 181 466 72 362 4.81e-101 308
MS.gene034458.t1 AT5G10030 53.559 295 124 4 181 466 72 362 4.81e-101 308
MS.gene034458.t1 AT5G10030 53.559 295 124 4 181 466 72 362 4.81e-101 308
MS.gene034458.t1 AT1G68640 55.442 294 116 5 186 466 161 452 8.82e-100 308
MS.gene034458.t1 AT5G65210 51.877 293 132 3 181 466 6 296 3.22e-96 293
MS.gene034458.t1 AT5G65210 51.877 293 132 3 181 466 76 366 4.71e-96 295
MS.gene034458.t1 AT5G65210 51.877 293 132 3 181 466 76 366 4.71e-96 295
MS.gene034458.t1 AT5G65210 51.877 293 132 3 181 466 76 366 4.71e-96 295
MS.gene034458.t1 AT5G65210 51.877 293 132 3 181 466 76 366 4.71e-96 295
MS.gene034458.t1 AT5G65210 51.877 293 132 3 181 466 76 366 4.71e-96 295
MS.gene034458.t1 AT5G65210 51.877 293 132 3 181 466 76 366 4.71e-96 295
MS.gene034458.t1 AT1G58330 26.244 221 148 4 251 456 3 223 2.80e-14 72.8

Find 98 sgRNAs with CRISPR-Local

Find 280 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTGGAAATGTTCCCTTCT+TGG 0.211576 2.3:-12555315 MS.gene034458:CDS
AATCAAGTTCTCCTATTCTT+TGG 0.233116 2.3:+12556009 None:intergenic
CTGCTAGTGGCTCCAATTGC+TGG 0.291746 2.3:+12551123 None:intergenic
TTAGAGCTCTTAGTTCTCTT+TGG 0.292211 2.3:-12549846 MS.gene034458:CDS
AAGCTGAACGTTGCTTCCTT+TGG 0.305878 2.3:-12552213 MS.gene034458:CDS
TCAACTCATCATGTCCCTTA+TGG 0.310663 2.3:-12555969 MS.gene034458:CDS
ACTAGCAGAGCAGCAGATAA+TGG 0.313627 2.3:-12551108 MS.gene034458:CDS
TAGAGCTCTTAGTTCTCTTT+GGG 0.313649 2.3:-12549845 MS.gene034458:CDS
GAAAAGTCGTCTAAGGAAAA+AGG 0.321473 2.3:-12553846 MS.gene034458:intron
ATCAGATCATAATAATAATA+TGG 0.322421 2.3:-12554942 MS.gene034458:CDS
GCAATGTTTGACATGGAATA+TGG 0.352960 2.3:-12552424 MS.gene034458:CDS
TCTCTTGTTGACACCATTGC+TGG 0.353849 2.3:-12551011 MS.gene034458:CDS
CTAGCAGAGCAGCAGATAAT+GGG 0.357751 2.3:-12551107 MS.gene034458:CDS
TTTGCATATCCGTGGTTGTT+TGG 0.361993 2.3:+12549469 None:intergenic
AATTTAAAAGGGTATGTTCA+TGG 0.367637 2.3:-12553572 MS.gene034458:intron
TAGATTAAAGCTTACACAAT+TGG 0.368639 2.3:-12553707 MS.gene034458:CDS
AAGGGTGATTCTTGCTCAAA+AGG 0.370182 2.3:+12554989 None:intergenic
TTACTACTGTTGAGGTTTGA+TGG 0.373913 2.3:+12555281 None:intergenic
CTTGTTATTGGAGAATACTA+TGG 0.375599 2.3:-12549874 MS.gene034458:CDS
GCTGGAGGACCCCTTGTTGA+TGG 0.376451 2.3:-12550993 MS.gene034458:CDS
CCTGAGAGCGTGCTCTTTGA+AGG 0.382110 2.3:+12553677 None:intergenic
TTCCAGTGTAGCAGCAGGTC+TGG 0.387739 2.3:+12555330 None:intergenic
TTTGTTAGGAATGAAGAATC+TGG 0.392918 2.3:-12555812 MS.gene034458:intron
ATGGATTGGAGTGGTGGTGT+TGG 0.398537 2.3:-12553553 MS.gene034458:CDS
TGAGACGTTTAGCACAAAAC+AGG 0.401597 2.3:-12553880 MS.gene034458:CDS
GTGTGAGTAATCGACATAAT+TGG 0.411816 2.3:+12549920 None:intergenic
CGTTGCTTCCTTTGGATTGG+TGG 0.418885 2.3:-12552205 MS.gene034458:CDS
TTCTTAACTCCGTTAATAAA+CGG 0.419059 2.3:+12552380 None:intergenic
CTGCAAGGAAAAGTCGTCTA+AGG 0.422741 2.3:-12553853 MS.gene034458:CDS
GGCAAGCTTGCCAATCTTGA+AGG 0.422961 2.3:-12550945 MS.gene034458:CDS
AGAAGACAACCGTTTATTAA+CGG 0.423518 2.3:-12552389 MS.gene034458:CDS
TCCCTTATGGAATTCATCAT+AGG 0.425244 2.3:-12555956 MS.gene034458:CDS
ATCCAGACCTGCTGCTACAC+TGG 0.426810 2.3:-12555332 MS.gene034458:CDS
TCAGATGTTGATCCAGCAAT+TGG 0.431974 2.3:-12551135 MS.gene034458:intron
CAGGAAGGTGGTAACAAATC+AGG 0.441251 2.3:-12555055 MS.gene034458:CDS
TAATACATTAAACTTGATGA+AGG 0.448293 2.3:+12555924 None:intergenic
GAACGTTGCTTCCTTTGGAT+TGG 0.451843 2.3:-12552208 MS.gene034458:CDS
GACGTGTTTCATCTTATCAA+TGG 0.455217 2.3:-12552250 MS.gene034458:CDS
ATCCTATGATGAATTCCATA+AGG 0.459315 2.3:+12555954 None:intergenic
AAAAGGGTATGTTCATGGAT+TGG 0.465698 2.3:-12553567 MS.gene034458:intron
CAACAAATGGTTGTTGCCAT+AGG 0.467436 2.3:-12550966 MS.gene034458:CDS
CAACAAGAGACTGTTGCAAC+TGG 0.468138 2.3:+12551024 None:intergenic
TAGACCCTCTGAAATTATCA+TGG 0.469132 2.3:-12552179 MS.gene034458:intron
AAGATTGGCAAGCTTGCCTA+TGG 0.469646 2.3:+12550950 None:intergenic
CAGCAGATAATGGGGATGTA+TGG 0.469706 2.3:-12551098 MS.gene034458:CDS
ACGAAGAAAACCTTCAAGAT+TGG 0.470177 2.3:+12550935 None:intergenic
TGGAATCTCATTGGCCAAGA+AGG 0.473970 2.3:+12555301 None:intergenic
ATGTTCATGGATTGGAGTGG+TGG 0.483245 2.3:-12553559 MS.gene034458:CDS
TCCTATGATGAATTCCATAA+GGG 0.488783 2.3:+12555955 None:intergenic
AGGGTGATTCTTGCTCAAAA+GGG 0.490521 2.3:+12554990 None:intergenic
TGTTGATGGTGTTCAACAAA+TGG 0.493901 2.3:-12550979 MS.gene034458:CDS
CCTTCAAAGAGCACGCTCTC+AGG 0.494782 2.3:-12553677 MS.gene034458:intron
GAGGTTTGATGGAATCTCAT+TGG 0.494784 2.3:+12555292 None:intergenic
AACAACCACGGATATGCAAA+TGG 0.498862 2.3:-12549466 MS.gene034458:CDS
GATTGGAGTGGTGGTGTTGG+AGG 0.512468 2.3:-12553550 MS.gene034458:CDS
ATAAACACCTTTGCATCAAG+TGG 0.519298 2.3:+12553994 None:intergenic
ATCAGCAGCAGCCAAAGAAA+AGG 0.524596 2.3:-12554825 MS.gene034458:intron
ACTAACCATGATAATTTCAG+AGG 0.533906 2.3:+12552174 None:intergenic
CACAAAACAGGGAGGCTGCA+AGG 0.543811 2.3:-12553868 MS.gene034458:CDS
AACATTTCCAGTGTAGCAGC+AGG 0.549096 2.3:+12555325 None:intergenic
ATTATCTGCTGCTCTGCTAG+TGG 0.553911 2.3:+12551110 None:intergenic
CTTGTTGACACCATTGCTGG+AGG 0.554730 2.3:-12551008 MS.gene034458:CDS
ATTACTCACACTTCGTCAAG+CGG 0.557736 2.3:-12549908 MS.gene034458:CDS
AATTGAAGGCTGATAACTTG+AGG 0.558228 2.3:-12549957 MS.gene034458:intron
TTATTAACGGAGTTAAGAAA+CGG 0.562286 2.3:-12552376 MS.gene034458:CDS
GATCAAATATTTAGACTCAA+AGG 0.563784 2.3:-12552289 MS.gene034458:CDS
GGAATCTCATTGGCCAAGAA+GGG 0.563800 2.3:+12555302 None:intergenic
AGATAAGCCACTTGATGCAA+AGG 0.567470 2.3:-12554001 MS.gene034458:intron
GTCTAAAACCACCAATCCAA+AGG 0.567699 2.3:+12552197 None:intergenic
AGAGAGTATTACTACTGTTG+AGG 0.572603 2.3:+12555273 None:intergenic
TTTGTGAAATGATTCTGAGA+AGG 0.574512 2.3:+12549438 None:intergenic
GCAGAGGAAGCTCTCTCACA+AGG 0.575222 2.3:-12551053 MS.gene034458:CDS
AACAAGGGGTCCTCCAGCAA+TGG 0.575749 2.3:+12550998 None:intergenic
TTGACATGGAATATGGAAGA+TGG 0.583833 2.3:-12552417 MS.gene034458:CDS
TTGAACCATTTGCATATCCG+TGG 0.584485 2.3:+12549461 None:intergenic
TTTGTTGAACACCATCAACA+AGG 0.585380 2.3:+12550982 None:intergenic
TGCATGGCGAGCCAAAGAAT+AGG 0.589611 2.3:-12556020 MS.gene034458:CDS
AGATAATGAAATGAGAGTAA+TGG 0.594040 2.3:-12552335 MS.gene034458:CDS
TATTTGGAAATACAGGAAGG+TGG 0.595349 2.3:-12555067 MS.gene034458:intron
TATTTGATTCTGTGATGAAG+AGG 0.598778 2.3:+12554847 None:intergenic
GAAATGAGAGTAATGGTGGA+TGG 0.599016 2.3:-12552328 MS.gene034458:CDS
ATATATTTAACTTACTCTCG+TGG 0.607255 2.3:+12549814 None:intergenic
TTCATCTTATCAATGGCATG+TGG 0.610713 2.3:-12552243 MS.gene034458:CDS
TAATGAAATGAGAGTAATGG+TGG 0.614982 2.3:-12552332 MS.gene034458:CDS
TTGTTGAACACCATCAACAA+GGG 0.615909 2.3:+12550983 None:intergenic
GTTAAGAAACGGATTGCAAG+CGG 0.631491 2.3:-12552365 MS.gene034458:CDS
GTTGGAGGCAATATAAGCTC+TGG 0.639351 2.3:-12553535 MS.gene034458:intron
TAGCAGAGCAGCAGATAATG+GGG 0.639568 2.3:-12551106 MS.gene034458:CDS
GCATTCTTCACAGCAAGCAG+AGG 0.646463 2.3:-12551069 MS.gene034458:CDS
GAGACGTTTAGCACAAAACA+GGG 0.648005 2.3:-12553879 MS.gene034458:CDS
AGGAGGTGCAATGTTTGACA+TGG 0.651643 2.3:-12552431 MS.gene034458:CDS
TGTTGAACACCATCAACAAG+GGG 0.659117 2.3:+12550984 None:intergenic
CTAACCATGATAATTTCAGA+GGG 0.659541 2.3:+12552175 None:intergenic
TAACTCATGCCAAACAACCA+CGG 0.685861 2.3:-12549478 MS.gene034458:CDS
GAAGGTGGTAACAAATCAGG+AGG 0.695839 2.3:-12555052 MS.gene034458:CDS
TAATGGGGATGTATGGACTG+AGG 0.699689 2.3:-12551091 MS.gene034458:CDS
GGTATGTTCATGGATTGGAG+TGG 0.755721 2.3:-12553562 MS.gene034458:CDS
ACGTTTAGCACAAAACAGGG+AGG 0.779708 2.3:-12553876 MS.gene034458:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATAAAGTTAATAGATT+AGG - chr2.3:12549980-12549999 MS.gene034458:intron 10.0%
!! ATTATATATTTACATTTAGT+TGG - chr2.3:12555662-12555681 MS.gene034458:intron 10.0%
!! GAATTATAAAAATATACAAT+AGG - chr2.3:12552169-12552188 MS.gene034458:intron 10.0%
!! GTATAGTTAAATAATTTAAT+CGG + chr2.3:12550351-12550370 None:intergenic 10.0%
!! TAATAAAGGAATTATATTAT+GGG - chr2.3:12553378-12553397 MS.gene034458:intron 10.0%
!! TAATTAAAGATAAAGAAAAA+TGG + chr2.3:12555870-12555889 None:intergenic 10.0%
!! TATTTATTACTAAAAAAAAG+TGG + chr2.3:12552704-12552723 None:intergenic 10.0%
!! TCTTCAATAAATTATAAATA+AGG - chr2.3:12549549-12549568 MS.gene034458:intron 10.0%
!! TTAATAAAGGAATTATATTA+TGG - chr2.3:12553377-12553396 MS.gene034458:intron 10.0%
!! TTATTGTAATAATAAATTGT+AGG - chr2.3:12552997-12553016 MS.gene034458:intron 10.0%
!! TTGAATATAACAAAATAAAT+TGG + chr2.3:12555928-12555947 None:intergenic 10.0%
!!! ATATGTAACTTTTTTAAAAA+TGG - chr2.3:12552047-12552066 MS.gene034458:intron 10.0%
!!! ATTTTAACTGTTAATTTAAA+AGG - chr2.3:12551864-12551883 MS.gene034458:intron 10.0%
!!! GAGTTTATATATTTTAAAAA+AGG + chr2.3:12552220-12552239 None:intergenic 10.0%
!!! TACTAGTAATTTATTATTTT+TGG - chr2.3:12552020-12552039 MS.gene034458:intron 10.0%
!!! TTTTAACTGTTAATTTAAAA+GGG - chr2.3:12551865-12551884 MS.gene034458:intron 10.0%
!! AATAAATTACTAGTAAATGA+TGG + chr2.3:12552015-12552034 None:intergenic 15.0%
!! ACAAAATAAATTGTAACAAA+CGG - chr2.3:12553701-12553720 MS.gene034458:CDS 15.0%
!! AGTTATTTATTCATAGATTT+CGG + chr2.3:12552140-12552159 None:intergenic 15.0%
!! ATCAGATCATAATAATAATA+TGG - chr2.3:12550506-12550525 MS.gene034458:intron 15.0%
!! TAAGCATAATTAAAATAGAT+TGG + chr2.3:12550209-12550228 None:intergenic 15.0%
!! TAATCACAAGAAATTAAATT+TGG - chr2.3:12552846-12552865 MS.gene034458:intron 15.0%
!! TTTACCAAAATAATTGTAAA+AGG + chr2.3:12550024-12550043 None:intergenic 15.0%
!!! AAATTTAAAGCCTTTTATTT+TGG - chr2.3:12550044-12550063 MS.gene034458:intron 15.0%
!!! AATACCTTTTACAATTATTT+TGG - chr2.3:12550017-12550036 MS.gene034458:intron 15.0%
!!! ATTGAATTGAATTTTTCTAT+AGG - chr2.3:12551693-12551712 MS.gene034458:intron 15.0%
!!! CATTGTTTCAAATTATTTTT+TGG - chr2.3:12552488-12552507 MS.gene034458:intron 15.0%
!!! GTGAGTTTTTTTTTTTTTTT+TGG - chr2.3:12554050-12554069 MS.gene034458:intron 15.0%
!!! GTTGAAATACATTTTAATTA+TGG - chr2.3:12555710-12555729 MS.gene034458:intron 15.0%
!!! TTATTTTGTTATATTCAAAC+AGG - chr2.3:12555930-12555949 MS.gene034458:CDS 15.0%
!!! TTTACATTTTGATATTATGT+CGG + chr2.3:12552916-12552935 None:intergenic 15.0%
!!! TTTTTTTTGTTGTAGAAAAA+AGG - chr2.3:12551409-12551428 MS.gene034458:intron 15.0%
!! AAAAGCCAAAGTATATATAA+AGG + chr2.3:12552645-12552664 None:intergenic 20.0%
!! AAAATGTTTCATTCAAAAGT+TGG - chr2.3:12555129-12555148 MS.gene034458:intron 20.0%
!! AATGTGAAACTTCTTAATAA+AGG - chr2.3:12553364-12553383 MS.gene034458:intron 20.0%
!! CAAAATAAATTGTAACAAAC+GGG - chr2.3:12553702-12553721 MS.gene034458:CDS 20.0%
!! GTATCTATATCTATATGTAT+AGG + chr2.3:12551637-12551656 None:intergenic 20.0%
!! TAATACATTAAACTTGATGA+AGG + chr2.3:12549527-12549546 None:intergenic 20.0%
!! TAGTTTATACATGATAGAAA+AGG + chr2.3:12552261-12552280 None:intergenic 20.0%
!! TTAATGAATGAAATCAATGT+CGG - chr2.3:12553869-12553888 MS.gene034458:CDS 20.0%
!! TTGTAATAATAAATTGTAGG+AGG - chr2.3:12553000-12553019 MS.gene034458:intron 20.0%
!!! AAAAAATGCACTTTAAGAAA+AGG - chr2.3:12552788-12552807 MS.gene034458:intron 20.0%
!!! AAAAGAGTGTGTATTATAAA+GGG + chr2.3:12553847-12553866 None:intergenic 20.0%
!!! AATGTTTTTGTTTGTTTGTT+AGG - chr2.3:12549622-12549641 MS.gene034458:intron 20.0%
!!! AGTGATTATGTTAGTTTTTA+GGG + chr2.3:12555288-12555307 None:intergenic 20.0%
!!! ATACTTTTGAACATAAACAT+TGG + chr2.3:12552195-12552214 None:intergenic 20.0%
!!! ATATGCTAATGTTGATAATT+TGG - chr2.3:12554285-12554304 MS.gene034458:intron 20.0%
!!! CATATTAATTGTGAAGATTT+TGG + chr2.3:12552971-12552990 None:intergenic 20.0%
!!! CATTCATATTTTTCAATTGA+AGG - chr2.3:12555477-12555496 MS.gene034458:intron 20.0%
!!! CTATACTAATGATTTGTATT+TGG - chr2.3:12550365-12550384 MS.gene034458:intron 20.0%
!!! GCATTATTTTAATTGAATCA+AGG + chr2.3:12550313-12550332 None:intergenic 20.0%
!!! TAAAAGAGTGTGTATTATAA+AGG + chr2.3:12553848-12553867 None:intergenic 20.0%
!!! TAGTACTGTTTTATTCATTT+TGG - chr2.3:12549575-12549594 MS.gene034458:intron 20.0%
!!! TAGTGATTATGTTAGTTTTT+AGG + chr2.3:12555289-12555308 None:intergenic 20.0%
!!! TTGAATGAAACATTTTAAGA+TGG + chr2.3:12555125-12555144 None:intergenic 20.0%
!!! TTTACTATTAACCTTTTCTT+TGG + chr2.3:12550637-12550656 None:intergenic 20.0%
!!! TTTTTAACAACTTGTAACAA+AGG - chr2.3:12553612-12553631 MS.gene034458:intron 20.0%
! AAAAAAGTGAGTGTCATATT+GGG - chr2.3:12553934-12553953 MS.gene034458:intron 25.0%
! AAAGTCAAAACTTGATCTTA+TGG - chr2.3:12552076-12552095 MS.gene034458:intron 25.0%
! AACTATTTCAAATGAGAAGT+TGG + chr2.3:12553567-12553586 None:intergenic 25.0%
! AAGAAACAGTTCACAAAAAA+TGG - chr2.3:12551057-12551076 MS.gene034458:CDS 25.0%
! AAGTCAAAACTTGATCTTAT+GGG - chr2.3:12552077-12552096 MS.gene034458:intron 25.0%
! ACTTTATATTTCAGCAGTTA+TGG + chr2.3:12549971-12549990 None:intergenic 25.0%
! AGATAATGAAATGAGAGTAA+TGG - chr2.3:12553113-12553132 MS.gene034458:intron 25.0%
! AGCAAAATTATAACACCATT+TGG + chr2.3:12555812-12555831 None:intergenic 25.0%
! AGCAATATTCAAACTATATG+TGG + chr2.3:12554640-12554659 None:intergenic 25.0%
! AGTCTCCTTTATATATACTT+TGG - chr2.3:12552637-12552656 MS.gene034458:intron 25.0%
! ATAGATCACAAGGAAATAAT+GGG + chr2.3:12554706-12554725 None:intergenic 25.0%
! CAAAAATGTGCACATAAAAA+TGG + chr2.3:12551320-12551339 None:intergenic 25.0%
! CAAAATTTCCCTTAGTTTAT+GGG + chr2.3:12550718-12550737 None:intergenic 25.0%
! CAGATAATAAAATGTTAGGT+AGG + chr2.3:12554773-12554792 None:intergenic 25.0%
! GAAAGAAAGAAAAAAAGCAA+AGG - chr2.3:12549815-12549834 MS.gene034458:intron 25.0%
! GATCAAATATTTAGACTCAA+AGG - chr2.3:12553159-12553178 MS.gene034458:intron 25.0%
! GCAATAATTTACTGTTACAT+TGG + chr2.3:12554216-12554235 None:intergenic 25.0%
! GTACCAGATAATAAAATGTT+AGG + chr2.3:12554777-12554796 None:intergenic 25.0%
! TAAAAAAGTGAGTGTCATAT+TGG - chr2.3:12553933-12553952 MS.gene034458:intron 25.0%
! TAGATTAAAGCTTACACAAT+TGG - chr2.3:12551741-12551760 MS.gene034458:intron 25.0%
! TCAGTAAAAATCATGCAAAA+GGG + chr2.3:12549946-12549965 None:intergenic 25.0%
! TTAATTTCATGCATGTTTGT+AGG - chr2.3:12555688-12555707 MS.gene034458:intron 25.0%
! TTATTAACGGAGTTAAGAAA+CGG - chr2.3:12553072-12553091 MS.gene034458:intron 25.0%
! TTCTTAACTCCGTTAATAAA+CGG + chr2.3:12553071-12553090 None:intergenic 25.0%
! TTGAATTTGTACTATCTTCT+TGG - chr2.3:12550762-12550781 MS.gene034458:intron 25.0%
! TTTCTTGTGATTAAACAAAG+TGG + chr2.3:12552839-12552858 None:intergenic 25.0%
!! AAAGAGTGTGTATTATAAAG+GGG + chr2.3:12553846-12553865 None:intergenic 25.0%
!! AATCATTATGGTATTGGAAA+TGG + chr2.3:12549870-12549889 None:intergenic 25.0%
!! AATTTAAAAGGGTATGTTCA+TGG - chr2.3:12551876-12551895 MS.gene034458:intron 25.0%
!! ATATAAAAGCTGCTTTCAAA+GGG - chr2.3:12552282-12552301 MS.gene034458:CDS 25.0%
!! ATATATTTAACTTACTCTCG+TGG + chr2.3:12555637-12555656 None:intergenic 25.0%
!! CTACCTAACATTTTATTATC+TGG - chr2.3:12554771-12554790 MS.gene034458:intron 25.0%
!! TATATAAAAGCTGCTTTCAA+AGG - chr2.3:12552281-12552300 MS.gene034458:CDS 25.0%
!! TGATTTGTATTTGGAAATAC+AGG - chr2.3:12550374-12550393 MS.gene034458:intron 25.0%
!! TGTTGATGTTTTATATGCTA+AGG - chr2.3:12551520-12551539 MS.gene034458:intron 25.0%
!! TTTCAACTATTTTCCCTTAT+TGG - chr2.3:12555418-12555437 MS.gene034458:intron 25.0%
!!! AAGAATCTGGTTTTGATTTT+GGG - chr2.3:12549649-12549668 MS.gene034458:intron 25.0%
!!! AGAAGATGCTTTTTTACTTA+AGG + chr2.3:12550481-12550500 None:intergenic 25.0%
!!! CTTTTTTGCAATTTGAATCA+AGG - chr2.3:12554662-12554681 MS.gene034458:intron 25.0%
!!! GAAGATGCTTTTTTACTTAA+GGG + chr2.3:12550480-12550499 None:intergenic 25.0%
!!! TTGATTTTCTGAAATCTGTT+GGG + chr2.3:12550809-12550828 None:intergenic 25.0%
!!! TTTGATTTTCTGAAATCTGT+TGG + chr2.3:12550810-12550829 None:intergenic 25.0%
AAAAAGTGAGTGTCATATTG+GGG - chr2.3:12553935-12553954 MS.gene034458:intron 30.0%
AATAAAGCAGTAGCTAGTAT+AGG - chr2.3:12555329-12555348 MS.gene034458:CDS 30.0%
AATCAAGTTCTCCTATTCTT+TGG + chr2.3:12549442-12549461 None:intergenic 30.0%
ACTAACCATGATAATTTCAG+AGG + chr2.3:12553277-12553296 None:intergenic 30.0%
AGAAGACAACCGTTTATTAA+CGG - chr2.3:12553059-12553078 MS.gene034458:intron 30.0%
AGAGGATCAACCAAAATAAA+AGG + chr2.3:12550057-12550076 None:intergenic 30.0%
AGATAAGCAATAAGCCAATA+AGG + chr2.3:12555435-12555454 None:intergenic 30.0%
AGTAGTTAACTCATTTCTTG+AGG - chr2.3:12555224-12555243 MS.gene034458:intron 30.0%
ATCCTATGATGAATTCCATA+AGG + chr2.3:12549497-12549516 None:intergenic 30.0%
ATGTGATATGGATAGCAAAA+TGG + chr2.3:12551094-12551113 None:intergenic 30.0%
CAATCATCTTCAATGTGATA+TGG + chr2.3:12551106-12551125 None:intergenic 30.0%
CATAGATCACAAGGAAATAA+TGG + chr2.3:12554707-12554726 None:intergenic 30.0%
CATCAAAGAAAAAATCTGAG+AGG + chr2.3:12550075-12550094 None:intergenic 30.0%
CCAAAATTTCCCTTAGTTTA+TGG + chr2.3:12550719-12550738 None:intergenic 30.0%
CCCTTAAATTCAATCAAGAT+CGG + chr2.3:12554817-12554836 None:intergenic 30.0%
CCGATCTTGATTGAATTTAA+GGG - chr2.3:12554814-12554833 MS.gene034458:intron 30.0%
CCTTAAATTCAATCAAGATC+GGG + chr2.3:12554816-12554835 None:intergenic 30.0%
CTAACCATGATAATTTCAGA+GGG + chr2.3:12553276-12553295 None:intergenic 30.0%
CTATGAGTTAGCAACATAAT+TGG + chr2.3:12555015-12555034 None:intergenic 30.0%
CTGCAAAAGAAATATTCAAG+TGG + chr2.3:12552310-12552329 None:intergenic 30.0%
GATAAGCAATAAGCCAATAA+GGG + chr2.3:12555434-12555453 None:intergenic 30.0%
GATATAACAACGTACATTTG+TGG + chr2.3:12554751-12554770 None:intergenic 30.0%
GGTTACGTTTAGACATAAAT+AGG - chr2.3:12554089-12554108 MS.gene034458:intron 30.0%
GTCAGTAAAAATCATGCAAA+AGG + chr2.3:12549947-12549966 None:intergenic 30.0%
TAACAACTTGTAACAAAGGA+TGG - chr2.3:12553616-12553635 MS.gene034458:intron 30.0%
TAATGAAATGAGAGTAATGG+TGG - chr2.3:12553116-12553135 MS.gene034458:intron 30.0%
TATTTGATTCTGTGATGAAG+AGG + chr2.3:12550604-12550623 None:intergenic 30.0%
TCCTATGATGAATTCCATAA+GGG + chr2.3:12549496-12549515 None:intergenic 30.0%
TTAAATTACCTCCACTACTT+TGG - chr2.3:12554972-12554991 MS.gene034458:CDS 30.0%
TTATTTCCTTGTGATCTATG+TGG - chr2.3:12554707-12554726 MS.gene034458:intron 30.0%
TTCAACCAAGAACAAAAAGA+TGG + chr2.3:12551203-12551222 None:intergenic 30.0%
TTCCATATCCCATAAACTAA+GGG - chr2.3:12550707-12550726 MS.gene034458:intron 30.0%
TTGTATTTGGAAATACAGGA+AGG - chr2.3:12550378-12550397 MS.gene034458:intron 30.0%
TTTCCATATCCCATAAACTA+AGG - chr2.3:12550706-12550725 MS.gene034458:intron 30.0%
TTTGTTAGGAATGAAGAATC+TGG - chr2.3:12549636-12549655 MS.gene034458:intron 30.0%
! CAACTCTTTCTAAAAGTAGA+GGG - chr2.3:12549793-12549812 MS.gene034458:intron 30.0%
! CCATAAACTAAGGGAAATTT+TGG - chr2.3:12550716-12550735 MS.gene034458:intron 30.0%
! GATATTTTTCATGTGCCAAA+TGG - chr2.3:12555794-12555813 MS.gene034458:CDS 30.0%
! GTACACACTAATTTGCATTA+AGG - chr2.3:12554253-12554272 MS.gene034458:intron 30.0%
! TCTAAGGTCAGAAAAAAAAG+TGG + chr2.3:12549763-12549782 None:intergenic 30.0%
! TGAATATTTCTTTTGCAGCT+TGG - chr2.3:12552312-12552331 MS.gene034458:CDS 30.0%
! TTTGTGAAATGATTCTGAGA+AGG + chr2.3:12556013-12556032 None:intergenic 30.0%
! TTTTGCAGCTTGGATTAATT+TGG - chr2.3:12552322-12552341 MS.gene034458:CDS 30.0%
!! AATTTGGCTCTCTATCTTTA+GGG - chr2.3:12552338-12552357 MS.gene034458:CDS 30.0%
!! CTTGTTATTGGAGAATACTA+TGG - chr2.3:12555574-12555593 MS.gene034458:intron 30.0%
!! TAATTTGGCTCTCTATCTTT+AGG - chr2.3:12552337-12552356 MS.gene034458:CDS 30.0%
!! TGATATTATGTCGGTTGTTT+TGG + chr2.3:12552907-12552926 None:intergenic 30.0%
!!! AAGTTGGTTTTAGAAAGTGA+TGG - chr2.3:12555145-12555164 MS.gene034458:intron 30.0%
!!! AGAATCTGGTTTTGATTTTG+GGG - chr2.3:12549650-12549669 MS.gene034458:intron 30.0%
!!! GAAGAATCTGGTTTTGATTT+TGG - chr2.3:12549648-12549667 MS.gene034458:intron 30.0%
AATGGTTAAGCAAATGAGTG+AGG + chr2.3:12551302-12551321 None:intergenic 35.0%
AATTGAAGGCTGATAACTTG+AGG - chr2.3:12555491-12555510 MS.gene034458:intron 35.0%
ACGAAGAAAACCTTCAAGAT+TGG + chr2.3:12554516-12554535 None:intergenic 35.0%
AGCACCTAAAATCTCATAGA+GGG - chr2.3:12552611-12552630 MS.gene034458:intron 35.0%
ATAAACACCTTTGCATCAAG+TGG + chr2.3:12551457-12551476 None:intergenic 35.0%
ATTGCATTCCTACTGAGAAA+TGG - chr2.3:12551122-12551141 MS.gene034458:CDS 35.0%
CATCATGTTGCTCAAAAGTT+AGG - chr2.3:12555077-12555096 MS.gene034458:intron 35.0%
CCAATACCATAATGATTCTG+AGG - chr2.3:12549873-12549892 MS.gene034458:CDS 35.0%
CCCGATCTTGATTGAATTTA+AGG - chr2.3:12554813-12554832 MS.gene034458:intron 35.0%
CCTCAGAATCATTATGGTAT+TGG + chr2.3:12549876-12549895 None:intergenic 35.0%
CTATTGCCTCAGAATCATTA+TGG + chr2.3:12549882-12549901 None:intergenic 35.0%
GAAAAGTCGTCTAAGGAAAA+AGG - chr2.3:12551602-12551621 MS.gene034458:intron 35.0%
GACGTGTTTCATCTTATCAA+TGG - chr2.3:12553198-12553217 MS.gene034458:intron 35.0%
GACTAAGTAGTGCAATAATG+TGG + chr2.3:12552883-12552902 None:intergenic 35.0%
GCAATGTTTGACATGGAATA+TGG - chr2.3:12553024-12553043 MS.gene034458:intron 35.0%
GGAAATGAGCAGTATCATAA+TGG + chr2.3:12552683-12552702 None:intergenic 35.0%
GTGTGAGTAATCGACATAAT+TGG + chr2.3:12555531-12555550 None:intergenic 35.0%
TAATTGAATCAAGGCGACAA+GGG + chr2.3:12550304-12550323 None:intergenic 35.0%
TATTTGGAAATACAGGAAGG+TGG - chr2.3:12550381-12550400 MS.gene034458:intron 35.0%
TCATATTGGGGTGTATAAGA+TGG - chr2.3:12553947-12553966 MS.gene034458:intron 35.0%
TCCCTTATGGAATTCATCAT+AGG - chr2.3:12549492-12549511 MS.gene034458:CDS 35.0%
TGCTCAAAAGTTAGGTCATA+AGG - chr2.3:12555085-12555104 MS.gene034458:intron 35.0%
TTAATTGAATCAAGGCGACA+AGG + chr2.3:12550305-12550324 None:intergenic 35.0%
TTACTACTGTTGAGGTTTGA+TGG + chr2.3:12550170-12550189 None:intergenic 35.0%
TTCATCTTATCAATGGCATG+TGG - chr2.3:12553205-12553224 MS.gene034458:intron 35.0%
TTCATGTCAGAAAATCGTTC+AGG + chr2.3:12550855-12550874 None:intergenic 35.0%
TTCCCTTAGTTTATGGGATA+TGG + chr2.3:12550712-12550731 None:intergenic 35.0%
TTGACATGGAATATGGAAGA+TGG - chr2.3:12553031-12553050 MS.gene034458:intron 35.0%
TTGTTGAACACCATCAACAA+GGG + chr2.3:12554468-12554487 None:intergenic 35.0%
TTGTTGTAGAAAAAAGGAGC+TGG - chr2.3:12551415-12551434 MS.gene034458:intron 35.0%
TTTGTTGAACACCATCAACA+AGG + chr2.3:12554469-12554488 None:intergenic 35.0%
! AAAAGGGTATGTTCATGGAT+TGG - chr2.3:12551881-12551900 MS.gene034458:intron 35.0%
! CCAACTCTTTCTAAAAGTAG+AGG - chr2.3:12549792-12549811 MS.gene034458:intron 35.0%
! CTAACTTTTGAGCAACATGA+TGG + chr2.3:12555079-12555098 None:intergenic 35.0%
! GAGTTGGTTATGCTTATCTA+AGG + chr2.3:12549779-12549798 None:intergenic 35.0%
! GTTTTGCAAGGAGTTAAGAA+TGG - chr2.3:12549690-12549709 MS.gene034458:intron 35.0%
! TAGAGCTCTTAGTTCTCTTT+GGG - chr2.3:12555603-12555622 MS.gene034458:intron 35.0%
! TATGCCCTCTATGAGATTTT+AGG + chr2.3:12552618-12552637 None:intergenic 35.0%
! TCATGCCATCTTTTTGTTCT+TGG - chr2.3:12551195-12551214 MS.gene034458:intron 35.0%
! TTAGAGCTCTTAGTTCTCTT+TGG - chr2.3:12555602-12555621 MS.gene034458:intron 35.0%
!! AGAGAGTATTACTACTGTTG+AGG + chr2.3:12550178-12550197 None:intergenic 35.0%
!! ATTTGGCTCTCTATCTTTAG+GGG - chr2.3:12552339-12552358 MS.gene034458:CDS 35.0%
!! CCTCTACTTTTAGAAAGAGT+TGG + chr2.3:12549795-12549814 None:intergenic 35.0%
!! CTGAAAGAGCTTTGTCTTTT+AGG - chr2.3:12555256-12555275 MS.gene034458:intron 35.0%
!! GAAGAAGCAATTGTTTTGCA+AGG - chr2.3:12549678-12549697 MS.gene034458:intron 35.0%
!! TAGACCCTCTGAAATTATCA+TGG - chr2.3:12553269-12553288 MS.gene034458:intron 35.0%
!! TGTTGATGGTGTTCAACAAA+TGG - chr2.3:12554469-12554488 MS.gene034458:intron 35.0%
!!! GAACTTGATTTTTCTGAGAC+AGG - chr2.3:12549452-12549471 MS.gene034458:CDS 35.0%
AACAACCACGGATATGCAAA+TGG - chr2.3:12555982-12556001 MS.gene034458:CDS 40.0%
AAGGGTGATTCTTGCTCAAA+AGG + chr2.3:12550462-12550481 None:intergenic 40.0%
AATCATGCAAAAGGGTAGTG+AGG + chr2.3:12549938-12549957 None:intergenic 40.0%
AGATAAGCCACTTGATGCAA+AGG - chr2.3:12551447-12551466 MS.gene034458:intron 40.0%
AGGGTGATTCTTGCTCAAAA+GGG + chr2.3:12550461-12550480 None:intergenic 40.0%
AGTAGTGCAATAATGTGGCA+AGG + chr2.3:12552878-12552897 None:intergenic 40.0%
ATTACTCACACTTCGTCAAG+CGG - chr2.3:12555540-12555559 MS.gene034458:intron 40.0%
CAACAAATGGTTGTTGCCAT+AGG - chr2.3:12554482-12554501 MS.gene034458:intron 40.0%
CAGAAAATCGTTCAGGAATC+AGG + chr2.3:12550848-12550867 None:intergenic 40.0%
CCATTTGACCATTTCTCAGT+AGG + chr2.3:12551133-12551152 None:intergenic 40.0%
CCTACTGAGAAATGGTCAAA+TGG - chr2.3:12551130-12551149 MS.gene034458:CDS 40.0%
CTTATGAGAAAGTGACGTTG+TGG + chr2.3:12554154-12554173 None:intergenic 40.0%
GAGACGTTTAGCACAAAACA+GGG - chr2.3:12551569-12551588 MS.gene034458:intron 40.0%
GAGCACCTAAAATCTCATAG+AGG - chr2.3:12552610-12552629 MS.gene034458:intron 40.0%
GAGGTTTGATGGAATCTCAT+TGG + chr2.3:12550159-12550178 None:intergenic 40.0%
GTTGTCATATGTCAGTTGTG+TGG - chr2.3:12554173-12554192 MS.gene034458:intron 40.0%
TAACTCATGCCAAACAACCA+CGG - chr2.3:12555970-12555989 MS.gene034458:CDS 40.0%
TCAACTCATCATGTCCCTTA+TGG - chr2.3:12549479-12549498 MS.gene034458:CDS 40.0%
TCAGATGTTGATCCAGCAAT+TGG - chr2.3:12554313-12554332 MS.gene034458:intron 40.0%
TGAGACGTTTAGCACAAAAC+AGG - chr2.3:12551568-12551587 MS.gene034458:intron 40.0%
TGTTGAACACCATCAACAAG+GGG + chr2.3:12554467-12554486 None:intergenic 40.0%
TTGAACCATTTGCATATCCG+TGG + chr2.3:12555990-12556009 None:intergenic 40.0%
TTTGCATATCCGTGGTTGTT+TGG + chr2.3:12555982-12556001 None:intergenic 40.0%
TTTGGTGAAGAAAGAGCTTG+TGG - chr2.3:12554068-12554087 MS.gene034458:intron 40.0%
! GAAATGAGAGTAATGGTGGA+TGG - chr2.3:12553120-12553139 MS.gene034458:intron 40.0%
! GTCTAAAACCACCAATCCAA+AGG + chr2.3:12553254-12553273 None:intergenic 40.0%
! TCTTGAAGGTTTTCTTCGTC+AGG - chr2.3:12554517-12554536 MS.gene034458:intron 40.0%
!! GATTCTGAGGCAATAGACAT+GGG - chr2.3:12549886-12549905 MS.gene034458:CDS 40.0%
!! GCACGCTCTTTTCTTGTTAT+TGG - chr2.3:12555562-12555581 MS.gene034458:intron 40.0%
!! GTTAAGAAACGGATTGCAAG+CGG - chr2.3:12553083-12553102 MS.gene034458:intron 40.0%
!! TGATTCTGAGGCAATAGACA+TGG - chr2.3:12549885-12549904 MS.gene034458:CDS 40.0%
AACATTTCCAGTGTAGCAGC+AGG + chr2.3:12550126-12550145 None:intergenic 45.0%
AAGATTGGCAAGCTTGCCTA+TGG + chr2.3:12554501-12554520 None:intergenic 45.0%
AAGCTGAACGTTGCTTCCTT+TGG - chr2.3:12553235-12553254 MS.gene034458:intron 45.0%
AAGGTGTGGGGTTACAAACT+TGG - chr2.3:12549909-12549928 MS.gene034458:CDS 45.0%
ACGTTTAGCACAAAACAGGG+AGG - chr2.3:12551572-12551591 MS.gene034458:intron 45.0%
ACTAGCAGAGCAGCAGATAA+TGG - chr2.3:12554340-12554359 MS.gene034458:intron 45.0%
AGAGAGAGAGAGTGAAGGAT+AGG - chr2.3:12550885-12550904 MS.gene034458:intron 45.0%
ATCAGCAGCAGCCAAAGAAA+AGG - chr2.3:12550623-12550642 MS.gene034458:intron 45.0%
ATGCAGCCACATAGATCACA+AGG + chr2.3:12554716-12554735 None:intergenic 45.0%
ATTATCTGCTGCTCTGCTAG+TGG + chr2.3:12554341-12554360 None:intergenic 45.0%
CAACAAGAGACTGTTGCAAC+TGG + chr2.3:12554427-12554446 None:intergenic 45.0%
CACTGGAAATGTTCCCTTCT+TGG - chr2.3:12550133-12550152 MS.gene034458:intron 45.0%
CAGGAAGGTGGTAACAAATC+AGG - chr2.3:12550393-12550412 MS.gene034458:intron 45.0%
CTAGCAGAGCAGCAGATAAT+GGG - chr2.3:12554341-12554360 MS.gene034458:intron 45.0%
CTGCAAGGAAAAGTCGTCTA+AGG - chr2.3:12551595-12551614 MS.gene034458:intron 45.0%
GAACGTTGCTTCCTTTGGAT+TGG - chr2.3:12553240-12553259 MS.gene034458:intron 45.0%
GAAGGTGGTAACAAATCAGG+AGG - chr2.3:12550396-12550415 MS.gene034458:intron 45.0%
GATAGAGAGAGAGAGAGTGA+AGG - chr2.3:12550880-12550899 MS.gene034458:intron 45.0%
GGAATCTCATTGGCCAAGAA+GGG + chr2.3:12550149-12550168 None:intergenic 45.0%
GTTGGAGGCAATATAAGCTC+TGG - chr2.3:12551913-12551932 MS.gene034458:intron 45.0%
TAGCAGAGCAGCAGATAATG+GGG - chr2.3:12554342-12554361 MS.gene034458:intron 45.0%
TCTCTTGTTGACACCATTGC+TGG - chr2.3:12554437-12554456 MS.gene034458:intron 45.0%
TGACGTGACAACCAAAGTAG+TGG + chr2.3:12554986-12555005 None:intergenic 45.0%
TGGAATCTCATTGGCCAAGA+AGG + chr2.3:12550150-12550169 None:intergenic 45.0%
! AATAGACATGGGAAGGTGTG+GGG - chr2.3:12549897-12549916 MS.gene034458:CDS 45.0%
! AGGAGGTGCAATGTTTGACA+TGG - chr2.3:12553017-12553036 MS.gene034458:intron 45.0%
! CAATAGACATGGGAAGGTGT+GGG - chr2.3:12549896-12549915 MS.gene034458:CDS 45.0%
! TAATGGGGATGTATGGACTG+AGG - chr2.3:12554357-12554376 MS.gene034458:intron 45.0%
!! ATGTTCATGGATTGGAGTGG+TGG - chr2.3:12551889-12551908 MS.gene034458:intron 45.0%
!! CAGCAGATAATGGGGATGTA+TGG - chr2.3:12554350-12554369 MS.gene034458:intron 45.0%
!! GGTATGTTCATGGATTGGAG+TGG - chr2.3:12551886-12551905 MS.gene034458:intron 45.0%
!! AATTAAATAAAACTTATATA+TGG - chr2.3:12551382-12551401 MS.gene034458:intron 5.0%
!! TTAATTACAAATTAATTATA+TGG + chr2.3:12553320-12553339 None:intergenic 5.0%
!!! TAATTAATTTGTAATTAATT+TGG - chr2.3:12553322-12553341 MS.gene034458:intron 5.0%
CGTGACAACCAAAGTAGTGG+AGG + chr2.3:12554983-12555002 None:intergenic 50.0%
CTGAGGCAATAGACATGGGA+AGG - chr2.3:12549890-12549909 MS.gene034458:CDS 50.0%
CTTGTTGACACCATTGCTGG+AGG - chr2.3:12554440-12554459 MS.gene034458:intron 50.0%
GCAATAGACATGGGAAGGTG+TGG - chr2.3:12549895-12549914 MS.gene034458:CDS 50.0%
GCATTCTTCACAGCAAGCAG+AGG - chr2.3:12554379-12554398 MS.gene034458:intron 50.0%
GGCAAGCTTGCCAATCTTGA+AGG - chr2.3:12554503-12554522 MS.gene034458:intron 50.0%
! CGTTGCTTCCTTTGGATTGG+TGG - chr2.3:12553243-12553262 MS.gene034458:intron 50.0%
!! ATGGATTGGAGTGGTGGTGT+TGG - chr2.3:12551895-12551914 MS.gene034458:intron 50.0%
AACAAGGGGTCCTCCAGCAA+TGG + chr2.3:12554453-12554472 None:intergenic 55.0%
ATCCAGACCTGCTGCTACAC+TGG - chr2.3:12550116-12550135 MS.gene034458:intron 55.0%
CACAAAACAGGGAGGCTGCA+AGG - chr2.3:12551580-12551599 MS.gene034458:intron 55.0%
CTGCTAGTGGCTCCAATTGC+TGG + chr2.3:12554328-12554347 None:intergenic 55.0%
GCAGAGGAAGCTCTCTCACA+AGG - chr2.3:12554395-12554414 MS.gene034458:intron 55.0%
TTCCAGTGTAGCAGCAGGTC+TGG + chr2.3:12550121-12550140 None:intergenic 55.0%
! CCTGAGAGCGTGCTCTTTGA+AGG + chr2.3:12551774-12551793 None:intergenic 55.0%
! CCTTCAAAGAGCACGCTCTC+AGG - chr2.3:12551771-12551790 MS.gene034458:intron 55.0%
! GATTGGAGTGGTGGTGTTGG+AGG - chr2.3:12551898-12551917 MS.gene034458:intron 55.0%
GCTGGAGGACCCCTTGTTGA+TGG - chr2.3:12554455-12554474 MS.gene034458:intron 60.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 12549431 12556039 12549431 ID=MS.gene034458
chr2.3 mRNA 12549431 12556039 12549431 ID=MS.gene034458.t1;Parent=MS.gene034458
chr2.3 exon 12555930 12556039 12555930 ID=MS.gene034458.t1.exon1;Parent=MS.gene034458.t1
chr2.3 CDS 12555930 12556039 12555930 ID=cds.MS.gene034458.t1;Parent=MS.gene034458.t1
chr2.3 exon 12555738 12555826 12555738 ID=MS.gene034458.t1.exon2;Parent=MS.gene034458.t1
chr2.3 CDS 12555738 12555826 12555738 ID=cds.MS.gene034458.t1;Parent=MS.gene034458.t1
chr2.3 exon 12555285 12555364 12555285 ID=MS.gene034458.t1.exon3;Parent=MS.gene034458.t1
chr2.3 CDS 12555285 12555364 12555285 ID=cds.MS.gene034458.t1;Parent=MS.gene034458.t1
chr2.3 exon 12554826 12555074 12554826 ID=MS.gene034458.t1.exon4;Parent=MS.gene034458.t1
chr2.3 CDS 12554826 12555074 12554826 ID=cds.MS.gene034458.t1;Parent=MS.gene034458.t1
chr2.3 exon 12554002 12554046 12554002 ID=MS.gene034458.t1.exon5;Parent=MS.gene034458.t1
chr2.3 CDS 12554002 12554046 12554002 ID=cds.MS.gene034458.t1;Parent=MS.gene034458.t1
chr2.3 exon 12553847 12553906 12553847 ID=MS.gene034458.t1.exon6;Parent=MS.gene034458.t1
chr2.3 CDS 12553847 12553906 12553847 ID=cds.MS.gene034458.t1;Parent=MS.gene034458.t1
chr2.3 exon 12553678 12553755 12553678 ID=MS.gene034458.t1.exon7;Parent=MS.gene034458.t1
chr2.3 CDS 12553678 12553755 12553678 ID=cds.MS.gene034458.t1;Parent=MS.gene034458.t1
chr2.3 exon 12553536 12553584 12553536 ID=MS.gene034458.t1.exon8;Parent=MS.gene034458.t1
chr2.3 CDS 12553536 12553584 12553536 ID=cds.MS.gene034458.t1;Parent=MS.gene034458.t1
chr2.3 exon 12552180 12552451 12552180 ID=MS.gene034458.t1.exon9;Parent=MS.gene034458.t1
chr2.3 CDS 12552180 12552451 12552180 ID=cds.MS.gene034458.t1;Parent=MS.gene034458.t1
chr2.3 exon 12550932 12551153 12550932 ID=MS.gene034458.t1.exon10;Parent=MS.gene034458.t1
chr2.3 CDS 12550932 12551153 12550932 ID=cds.MS.gene034458.t1;Parent=MS.gene034458.t1
chr2.3 exon 12549829 12549971 12549829 ID=MS.gene034458.t1.exon11;Parent=MS.gene034458.t1
chr2.3 CDS 12549829 12549971 12549829 ID=cds.MS.gene034458.t1;Parent=MS.gene034458.t1
chr2.3 exon 12549431 12549518 12549431 ID=MS.gene034458.t1.exon12;Parent=MS.gene034458.t1
chr2.3 CDS 12549431 12549518 12549431 ID=cds.MS.gene034458.t1;Parent=MS.gene034458.t1
Gene Sequence

>MS.gene034458

ATGGCGAGCCAAAGAATAGGAGAACTTGATTTTTCTGAGACAGGACATTCAACTCATCATGTCCCTTATGGAATTCATCATAGGATTAATAATCCTTCATCAAGTTTAATGTATTAATTCTTCAATAAATTATAAATAAGGAAGTAGTACTGTTTTATTCATTTTGGTTTGTATAGTATTTAATTTAGTATAATGTTTTTGTTTGTTTGTTAGGAATGAAGAATCTGGTTTTGATTTTGGGGAGCTAGAAGAAGCAATTGTTTTGCAAGGAGTTAAGAATGGAAATGATGAAACAAAAGCATGTAAGTTTTGCTTTTTTCTATCAAATACCACTTTTTTTTCTGACCTTAGATAAGCATAACCAACTCTTTCTAAAAGTAGAGGGAAAGAAAGAAAAAAAGCAAAGGTTTGAATATGTCTAAAGAGTGCATAGTTACCATTTCCAATACCATAATGATTCTGAGGCAATAGACATGGGAAGGTGTGGGGTTACAAACTTGGAAACCTCACTACCCTTTTGCATGATTTTTACTGACTCCATAACTGCTGAAATATAAAGTTAATAGATTAGGTTCTTCTTTTCTTCAATACCTTTTACAATTATTTTGGTAAAAAATTTAAAGCCTTTTATTTTGGTTGATCCTCTCAGATTTTTTCTTTGATGATTCTTTGCAGCTTTTTTCACATCCAGACCTGCTGCTACACTGGAAATGTTCCCTTCTTGGCCAATGAGATTCCATCAAACCTCAACAGTAGTAATACTCTCTATCTTTGACCAATCTATTTTAATTATGCTTATCATAGATGCTTCTTATACATTGTTCAATTCAATTTCAAATAGAATGCATGCTTTTTTTCATGTTTTTTCAGCCCTTGTCGCCTTGATTCAATTAAAATAATGCATGCGACGATATGAGCCGATTAAATTATTTAACTATACTAATGATTTGTATTTGGAAATACAGGAAGGTGGTAACAAATCAGGAGGTGAAAGCAGTGATTCAGCACTATCAAGCAAAAATGAGAACCCTTTTGAGCAAGAATCACCCTTAAGTAAAAAAGCATCTTCTTTTTCATCAGATCATAATAATAATATGGATCAGCAGAATCTTCAGCTACAACAACAGAAGATAATAATATCAAATGATGCTTCTGCTGCTATAAGAACAGCCTCTTCATCACAGAATCAAATATCAGCAGCAGCCAAAGAAAAGGTTAATAGTAAAAAAAAATATTCACTTATACAGTTAAAGTGTTAAATCACTTAGTTATCTCTTTCCATATCCCATAAACTAAGGGAAATTTTGGTCTTTTTTTATTTATTTACTGTTTTGAATTTGTACTATCTTCTTGGTCACGTAAAAACAGCACAGATCCCAACAGATTTCAGAAAATCAAAACAACAGAGAGTTTTCCTGATTCCTGAACGATTTTCTGACATGAAAACATGATAGAGAGAGAGAGAGTGAAGGATAGGATACTACTATTATGTTGTACTAACAAAAAAACAAAGTGAGAATCTTTTGAGTACTTATCAAAGTTTTTTTCACATTAAAAACTGACTCACTCTCACACACACTCTTCACTTGATATAGTGAAAACTTGTGTTTCTCTAACACAAGTCTAAAGAAACAGTTCACAAAAAATGGCTGAAAATGATCCATTTTGCTATCCATATCACATTGAAGATGATTGCATTCCTACTGAGAAATGGTCAAATGGTCTTCAACATTCTCAAAATTCAGTGAGCACACTCTAATATTATCATGCCATCTTTTTGTTCTTGGTTGAATTAAAAGTGTAGCATCTTTTTGATATAGCTCAAAAAAATTATCAAGTTATATGCTTAACAAATTTTCTTTTTTTTTCCTCACTCATTTGCTTAACCATTTTTATGTGCACATTTTTGTTCTACACTTGAAATTTGTGTATATCTTTCTGTTTTGCTTTTAATTAAATAAAACTTATATATGGATAATTTTTTTTGTTGTAGAAAAAAGGAGCTGGTTCAACATCAGATAAGCCACTTGATGCAAAGGTGTTTATATTTTTAAGTACAAATGTTCATTTTTATGTCTTTTTTTTGTTATGTTGATGTTTTATATGCTAAGGTAAAATTTGTACTTGTTTTAGACATTGAGACGTTTAGCACAAAACAGGGAGGCTGCAAGGAAAAGTCGTCTAAGGAAAAAGGTTTGTGTGTCCTATACATATAGATATAGATACATAAAGTTGTAAAAAATGAAAATATGAAACTTACTCATTGAATTGAATTTTTCTATAGGCTTATGTGCAGCAACTTGAGTCAAGTAGATTAAAGCTTACACAATTGGAACAAGACCTTCAAAGAGCACGCTCTCAGGTACTAAAGTCAAATATTATTGTATAATATATAGTTTATTTTTATTATTATTTTTACTTTTACTAATTAAGATTTTAACTGTTAATTTAAAAGGGTATGTTCATGGATTGGAGTGGTGGTGTTGGAGGCAATATAAGCTCTGGTGAGTTTATTTTTCATTTTTTTGTGATCATTTTTGAAACTAAGTTTATTTTCTTATTTGTCACATTCAGAAACTTACCATCATTTACTAGTAATTTATTATTTTTGGAAGTATATGTAACTTTTTTAAAAATGGCAAGTAAAAGTCAAAACTTGATCTTATGGGTGCTCATTTCAAAACGTAGAGAAGTCTCTGAATCTGACCGAAATCTATGAATAAATAACTCGTGTGTTTGAATTATAAAAATATACAATAGGCCAATGTTTATGTTCAAAAGTATGACCTTTTTTAAAATATATAAACTCTAATATTCAAAACTATGTCCTTTTCTATCATGTATAAACTATATATAAAAGCTGCTTTCAAAGGGTGCCACTTGAATATTTCTTTTGCAGCTTGGATTAATTTGGCTCTCTATCTTTAGGGGCACTATAATAATACGATGAAGATTACATTTTTAATTATTAGCTAGATATACATCTTTTGCTTTGAAATAATATGTTTTCAACTAATCTTGCTTTCATTTTTTTATCAGAAATGAGTTTTTAAAGATCATTGTTTCAAATTATTTTTTGGTTTACTAAAAGAAAATATAAGTTGTCAAACAAAAAAACAAAAGATATAAAAAGATCATATTTAAATAGCAAACAAAACATCATTTTCTTAATTTGAAAAGAGCACCTAAAATCTCATAGAGGGCATAGTCTCCTTTATATATACTTTGGCTTTTCTTAGAATAATCATTCCATTATGATACTGCTCATTTCCACTTTTTTTTAGTAATAAATAAAAATACAACTTTTGAAAGAAAAAAAAGTTGTAAATAAATAAATAATCATGAATTATCATGCACAAAAAATGCACTTTAAGAAAAGGAAACGCATTACGTAGTATGATTAATCCACTTTGTTTAATCACAAGAAATTAAATTTGGTTCATTCCTTGCCACATTATTGCACTACTTAGTCACCAAAACAACCGACATAATATCAAAATGTAAACTACTACATTTTAATTTTAATTAAATATGAAACCAAAATCTTCACAATTAATATGATATATTTATTGTAATAATAAATTGTAGGAGGTGCAATGTTTGACATGGAATATGGAAGATGGTTAGAAGAAGACAACCGTTTATTAACGGAGTTAAGAAACGGATTGCAAGCGGCGTTAACAGATAATGAAATGAGAGTAATGGTGGATGGATATTTGTGTCATTATGATCAAATATTTAGACTCAAAGGTGTCACTGCTAAATCAGACGTGTTTCATCTTATCAATGGCATGTGGACTTCTCAAGCTGAACGTTGCTTCCTTTGGATTGGTGGTTTTAGACCCTCTGAAATTATCATGGTTAGTACAGTACAATACTTTTCATTCCATATAATTAATTTGTAATTAATTTGGTATAATCATAAGAGTATGTAATGTGAAACTTCTTAATAAAGGAATTATATTATGGGTTTGTTTGTTTCATATTATTAAAAAAATTGTTTTGATGTTCAATCTTTAGAGAATAATATTTAGAGATTTTGTAAAAAAGTCAAAGATGTTTGTTTATTAAAATGAAAATCATTTTTTTAGATAATCACTTGTAGAAAATAATTTTAAATATAAGTTATTAAACCAACTTCTCATTTGAAATAGTTTTAGACTATTTTCATTTGCTCATTTTTTTTAACAACTTGTAACAAAGGATGGACATTTCTAAAAATTATTATTTACTATATACATATACATACATACATATATATGTGTGTTTTACAAAATAAATTGTAACAAACGGGCTTTATATACATTTTATTCATATATAGACATTTCTAATAAAAAAATCATATAAATGTGTTCATTATATACTTACATATCATTTCTTATATATAGAGTGCTAGAAACACTATTTTTTAACCCCTTTATAATACACACTCTTTTATTTAATGAATGAAATCAATGTCGGTTTCACATAAGTCATGAGATTCACACTGATTTCACTCGTAATAAAAAAGTGAGTGTCATATTGGGGTGTATAAGATGGTTTTTCTAACACTTATTTATCTAATAATTTAAGATGAAATTTATACTTAAAATAATGTAATTTTTTAAAAAAAATAGCTTGTGAGTTTTTTTTTTTTTTTTGGTGAAGAAAGAGCTTGTGGTTACGTTTAGACATAAATAGGACTGAAAAATTCATTTAACTTAAATAAATAAGTAGCGTTCCACAACGTCACTTTCTCATAAGTTGTCATATGTCAGTTGTGTGGCAGTACGAACTTCTGTTCCAATGTAACAGTAAATTATTGCATGTACAGACAGTAATAGTACACACTAATTTGCATTAAGGTTAATATTAATATGCTAATGTTGATAATTTGGTGATCTCAGATGTTGATCCAGCAATTGGAGCCACTAGCAGAGCAGCAGATAATGGGGATGTATGGACTGAGGCATTCTTCACAGCAAGCAGAGGAAGCTCTCTCACAAGGACTTGACCAGTTGCAACAGTCTCTTGTTGACACCATTGCTGGAGGACCCCTTGTTGATGGTGTTCAACAAATGGTTGTTGCCATAGGCAAGCTTGCCAATCTTGAAGGTTTTCTTCGTCAGGTACATAATAGAATTTAAATCGTATACATTGTTATTGACGATTTTATTTGAGTTTTTTATCTTATTTATTCGTAACATTTGTTATTTGTCAATTTTTTCCACATATAGTTTGAATATTGCTTTCTTTTTTGCAATTTGAATCAAGGAAAAATATTGTTTTTTATCCCATTATTTCCTTGTGATCTATGTGGCTGCATGCATATATTAAACCACAAATGTACGTTGTTATATCCTACCTAACATTTTATTATCTGGTACTAAAATACTAAATTAACCCGATCTTGATTGAATTTAAGGGTGTCTAACTTTCTTTTACTTTGTCTTGCATCATTAATTCTTATTGACATTTGCTTTTGACTTGTTTATTTATTTATGACGACTTTTTTGCATTTGTATATATAATAATAGTAACTAGTAGATATGTTGATCTTAATTAAATTACCTCCACTACTTTGGTTGTCACGTCAATCTTTCCAATTATGTTGCTAACTCATAGTGCTTTAGTTTAATATATGAATTTGCTTTGCTACAAATGTTCCATCATGTTGCTCAAAAGTTAGGTCATAAGGTTGATGTAATATTTCCATCTTAAAATGTTTCATTCAAAAGTTGGTTTTAGAAAGTGATGGTTATCTTGCTTAGTTTAAAATTAAAGACATTTTCTTGAATGTTTTCTAGTTAATTAAGTAGTTAACTCATTTCTTGAGGTAAATGATACTGAAAGAGCTTTGTCTTTTAGGAATCAACCCTAAAAACTAACATAATCACTAACTTATTATTAACATTTACTAATAAAGCAGTAGCTAGTATAGGAATTTTACATGTCAGTGATTAGTTAAATTTTTAAGAAGTTGCTCATAAAATTATTTTATATTTTAGTTTCAACTATTTTCCCTTATTGGCTTATTGCTTATCTATGAACTATGAAGTCTCATATTCATTCATATTTTTCAATTGAAGGCTGATAACTTGAGGCAACAAACTCTTCACCAATTATGTCGATTACTCACACTTCGTCAAGCGGCACGCTCTTTTCTTGTTATTGGAGAATACTATGGACGACTTAGAGCTCTTAGTTCTCTTTGGGCATCAAGACCACGAGAGTAAGTTAAATATATTCTAAATTATATATTTACATTTAGTTGGTAATTAATTTCATGCATGTTTGTAGGTTGAAATACATTTTAATTATGGTCTTTGATTTAATTTTACTAAGATAGATAGTACTTTTAATTTCATTAAATTATGTTTAAATGATATTTTTCATGTGCCAAATGGTGTTATAATTTTGCTTATAAAAAAATTATGCTCAATTTTTCATCAACTAACCATTTTTCTTTATCTTTAATTAGAAATTTATTTATTTTTTGAGTAATTTATGTATGACCAATTTATTTTGTTATATTCAAACAGGAACATGATCAGTGATGATAACTCATGCCAAACAACCACGGATATGCAAATGGTTCAACCTTCTCAGAATCATTTCACAAATTTCTGA
Protein sequence

>MS.gene034458.t1

MASQRIGELDFSETGHSTHHVPYGIHHRINNPSSSLMNEESGFDFGELEEAIVLQGVKNGNDETKASFFTSRPAATLEMFPSWPMRFHQTSTVEGGNKSGGESSDSALSSKNENPFEQESPLSKKASSFSSDHNNNMDQQNLQLQQQKIIISNDASAAIRTASSSQNQISAAAKEKKKGAGSTSDKPLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQDLQRARSQGMFMDWSGGVGGNISSGGAMFDMEYGRWLEEDNRLLTELRNGLQAALTDNEMRVMVDGYLCHYDQIFRLKGVTAKSDVFHLINGMWTSQAERCFLWIGGFRPSEIIMMLIQQLEPLAEQQIMGMYGLRHSSQQAEEALSQGLDQLQQSLVDTIAGGPLVDGVQQMVVAIGKLANLEGFLRQADNLRQQTLHQLCRLLTLRQAARSFLVIGEYYGRLRALSSLWASRPRENMISDDNSCQTTTDMQMVQPSQNHFTNF