Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene034460.t1 | XP_003596811.1 | 80.7 | 290 | 36 | 3 | 1 | 272 | 1 | 288 | 1.60E-110 | 409.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene034460.t1 | Q8RYD6 | 39.9 | 286 | 125 | 8 | 18 | 265 | 43 | 319 | 1.1e-33 | 145.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene034460.t1 | G7ITS3 | 80.7 | 290 | 36 | 3 | 1 | 272 | 1 | 288 | 1.2e-110 | 409.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene034460.t1 | TF | bZIP |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene034460.t1 | MTR_2g086390 | 83.103 | 290 | 29 | 3 | 1 | 272 | 1 | 288 | 1.52e-170 | 473 |
MS.gene034460.t1 | MTR_2g086390 | 81.008 | 258 | 29 | 3 | 1 | 240 | 1 | 256 | 2.82e-146 | 411 |
MS.gene034460.t1 | MTR_2g086340 | 64.000 | 325 | 63 | 8 | 1 | 272 | 1 | 324 | 1.63e-123 | 355 |
MS.gene034460.t1 | MTR_3g010660 | 32.372 | 312 | 118 | 12 | 19 | 257 | 29 | 320 | 2.79e-26 | 105 |
MS.gene034460.t1 | MTR_8g043960 | 35.338 | 266 | 114 | 12 | 18 | 237 | 32 | 285 | 7.46e-26 | 103 |
MS.gene034460.t1 | MTR_7g088090 | 33.216 | 283 | 112 | 10 | 19 | 238 | 25 | 293 | 3.83e-24 | 99.4 |
MS.gene034460.t1 | MTR_7g104480 | 42.222 | 135 | 61 | 3 | 18 | 135 | 47 | 181 | 1.81e-23 | 99.0 |
MS.gene034460.t1 | MTR_7g104480 | 57.732 | 97 | 38 | 1 | 172 | 265 | 323 | 419 | 1.50e-20 | 90.9 |
MS.gene034460.t1 | MTR_6g026800 | 32.609 | 276 | 122 | 9 | 19 | 237 | 25 | 293 | 1.03e-17 | 81.6 |
MS.gene034460.t1 | MTR_5g088230 | 31.081 | 222 | 135 | 5 | 17 | 237 | 37 | 241 | 2.98e-17 | 79.7 |
MS.gene034460.t1 | MTR_5g088230 | 31.081 | 222 | 135 | 5 | 17 | 237 | 32 | 236 | 3.46e-17 | 79.3 |
MS.gene034460.t1 | MTR_3g101780 | 52.564 | 78 | 30 | 1 | 160 | 237 | 325 | 395 | 4.20e-15 | 75.1 |
MS.gene034460.t1 | MTR_3g101780 | 37.600 | 125 | 57 | 6 | 18 | 134 | 35 | 146 | 9.48e-14 | 70.9 |
MS.gene034460.t1 | MTR_4g085910 | 45.098 | 102 | 44 | 3 | 163 | 263 | 281 | 371 | 6.89e-13 | 68.2 |
MS.gene034460.t1 | MTR_4g094390 | 35.556 | 135 | 63 | 4 | 117 | 251 | 77 | 187 | 2.02e-12 | 64.7 |
MS.gene034460.t1 | MTR_7g015990 | 43.956 | 91 | 45 | 3 | 153 | 237 | 76 | 166 | 5.10e-12 | 63.5 |
MS.gene034460.t1 | MTR_1g098590 | 28.641 | 206 | 109 | 5 | 68 | 253 | 34 | 221 | 5.06e-11 | 61.6 |
MS.gene034460.t1 | MTR_5g022780 | 39.516 | 124 | 53 | 3 | 141 | 249 | 120 | 236 | 6.71e-11 | 61.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene034460.t1 | AT3G44460 | 42.308 | 286 | 118 | 10 | 18 | 265 | 43 | 319 | 3.32e-49 | 166 |
MS.gene034460.t1 | AT3G56850 | 34.615 | 260 | 116 | 11 | 18 | 237 | 24 | 269 | 5.88e-28 | 109 |
MS.gene034460.t1 | AT2G36270 | 56.436 | 101 | 43 | 1 | 151 | 250 | 312 | 412 | 1.64e-27 | 110 |
MS.gene034460.t1 | AT2G36270 | 45.333 | 75 | 28 | 2 | 71 | 132 | 145 | 219 | 1.42e-11 | 64.7 |
MS.gene034460.t1 | AT2G36270 | 55.340 | 103 | 45 | 1 | 151 | 252 | 312 | 414 | 2.01e-27 | 110 |
MS.gene034460.t1 | AT2G36270 | 32.203 | 177 | 56 | 6 | 18 | 132 | 45 | 219 | 1.38e-15 | 76.6 |
MS.gene034460.t1 | AT2G36270 | 55.340 | 103 | 45 | 1 | 151 | 252 | 312 | 414 | 2.01e-27 | 110 |
MS.gene034460.t1 | AT2G36270 | 32.203 | 177 | 56 | 6 | 18 | 132 | 45 | 219 | 1.38e-15 | 76.6 |
MS.gene034460.t1 | AT2G41070 | 32.287 | 223 | 116 | 4 | 25 | 238 | 39 | 235 | 1.94e-25 | 101 |
MS.gene034460.t1 | AT2G41070 | 32.287 | 223 | 116 | 4 | 25 | 238 | 39 | 235 | 4.28e-25 | 100 |
MS.gene034460.t1 | AT2G41070 | 32.287 | 223 | 116 | 4 | 25 | 238 | 39 | 235 | 4.28e-25 | 100 |
MS.gene034460.t1 | AT2G41070 | 32.287 | 223 | 116 | 4 | 25 | 238 | 39 | 235 | 4.28e-25 | 100 |
MS.gene034460.t1 | AT2G41070 | 32.287 | 223 | 116 | 4 | 25 | 238 | 48 | 244 | 4.88e-25 | 100 |
MS.gene034460.t1 | AT5G44080 | 29.787 | 188 | 99 | 5 | 81 | 252 | 120 | 290 | 1.41e-15 | 75.5 |
MS.gene034460.t1 | AT1G45249 | 48.718 | 78 | 32 | 1 | 160 | 237 | 311 | 380 | 8.80e-15 | 73.9 |
MS.gene034460.t1 | AT1G45249 | 32.576 | 132 | 75 | 4 | 18 | 137 | 29 | 158 | 3.65e-11 | 63.2 |
MS.gene034460.t1 | AT1G45249 | 48.718 | 78 | 32 | 1 | 160 | 237 | 326 | 395 | 1.05e-14 | 73.9 |
MS.gene034460.t1 | AT1G45249 | 32.576 | 132 | 75 | 4 | 18 | 137 | 44 | 173 | 3.48e-11 | 63.5 |
MS.gene034460.t1 | AT1G45249 | 48.718 | 78 | 32 | 1 | 160 | 237 | 326 | 395 | 1.05e-14 | 73.9 |
MS.gene034460.t1 | AT1G45249 | 32.576 | 132 | 75 | 4 | 18 | 137 | 44 | 173 | 3.48e-11 | 63.5 |
MS.gene034460.t1 | AT1G03970 | 30.168 | 179 | 101 | 5 | 81 | 252 | 85 | 246 | 3.79e-14 | 70.9 |
MS.gene034460.t1 | AT4G34000 | 46.667 | 90 | 38 | 2 | 163 | 252 | 352 | 431 | 7.28e-14 | 71.6 |
MS.gene034460.t1 | AT4G34000 | 46.667 | 90 | 38 | 2 | 163 | 252 | 352 | 431 | 7.28e-14 | 71.6 |
MS.gene034460.t1 | AT4G34000 | 46.667 | 90 | 38 | 2 | 163 | 252 | 352 | 431 | 7.28e-14 | 71.6 |
MS.gene034460.t1 | AT3G19290 | 59.016 | 61 | 25 | 0 | 190 | 250 | 348 | 408 | 1.76e-13 | 70.1 |
MS.gene034460.t1 | AT3G19290 | 59.016 | 61 | 25 | 0 | 190 | 250 | 348 | 408 | 1.76e-13 | 70.1 |
MS.gene034460.t1 | AT3G19290 | 56.452 | 62 | 27 | 0 | 190 | 251 | 348 | 409 | 1.80e-13 | 70.1 |
MS.gene034460.t1 | AT3G19290 | 51.316 | 76 | 35 | 1 | 190 | 265 | 348 | 421 | 3.58e-13 | 69.3 |
MS.gene034460.t1 | AT1G49720 | 33.333 | 147 | 75 | 5 | 18 | 148 | 31 | 170 | 4.21e-13 | 68.9 |
MS.gene034460.t1 | AT1G49720 | 55.738 | 61 | 27 | 0 | 190 | 250 | 308 | 368 | 7.49e-12 | 65.5 |
MS.gene034460.t1 | AT1G49720 | 33.333 | 147 | 75 | 5 | 18 | 148 | 31 | 170 | 4.21e-13 | 68.9 |
MS.gene034460.t1 | AT1G49720 | 55.738 | 61 | 27 | 0 | 190 | 250 | 308 | 368 | 7.49e-12 | 65.5 |
MS.gene034460.t1 | AT1G49720 | 33.333 | 147 | 75 | 5 | 18 | 148 | 31 | 170 | 4.86e-13 | 68.9 |
MS.gene034460.t1 | AT1G49720 | 53.226 | 62 | 29 | 0 | 190 | 251 | 308 | 369 | 9.53e-12 | 65.1 |
MS.gene034460.t1 | AT2G17770 | 32.143 | 196 | 107 | 7 | 84 | 257 | 2 | 193 | 2.39e-12 | 64.7 |
MS.gene034460.t1 | AT4G34000 | 64.583 | 48 | 17 | 0 | 190 | 237 | 369 | 416 | 3.38e-12 | 66.6 |
MS.gene034460.t1 | AT1G45249 | 42.697 | 89 | 32 | 2 | 160 | 237 | 311 | 391 | 6.77e-12 | 65.5 |
MS.gene034460.t1 | AT1G45249 | 32.576 | 132 | 75 | 4 | 18 | 137 | 29 | 158 | 4.61e-11 | 63.2 |
MS.gene034460.t1 | AT4G35900 | 52.941 | 68 | 27 | 1 | 195 | 257 | 216 | 283 | 6.44e-11 | 62.0 |
MS.gene034460.t1 | AT1G45249 | 32.576 | 132 | 75 | 4 | 18 | 137 | 29 | 158 | 9.43e-11 | 62.0 |
MS.gene034460.t1 | AT1G45249 | 32.576 | 132 | 75 | 4 | 18 | 137 | 29 | 158 | 9.43e-11 | 62.0 |
Find 45 sgRNAs with CRISPR-Local
Find 79 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACCATCAATTATCCTCTTTC+TGG | 0.164582 | 2.3:+12568411 | None:intergenic |
ATGAGTTCCTAGCCAGTATT+TGG | 0.254341 | 2.3:-12568852 | MS.gene034460:CDS |
TAAAATGCTGAAACAATTTC+TGG | 0.256037 | 2.3:-12567885 | MS.gene034460:intron |
CTTGTCATTTGGTATGTTGC+AGG | 0.294849 | 2.3:+12568460 | None:intergenic |
TTTCGCTCCAATAGAACTTC+AGG | 0.322405 | 2.3:+12568385 | None:intergenic |
CCACTGAATATTGCAAGTTC+TGG | 0.324558 | 2.3:-12568499 | MS.gene034460:CDS |
ACTCAGCTCCACTTGTCATT+TGG | 0.334133 | 2.3:+12568449 | None:intergenic |
AGAAAACTTCGGATGAAGTT+TGG | 0.353717 | 2.3:-12568711 | MS.gene034460:CDS |
CAAAGTTCTTGAAATCATCT+AGG | 0.390515 | 2.3:+12568890 | None:intergenic |
GCAATCAGCAAAGGTTCAAA+AGG | 0.420453 | 2.3:-12567635 | MS.gene034460:CDS |
GACTGAATCACCAAGTTGTT+GGG | 0.423167 | 2.3:+12568756 | None:intergenic |
ATCACTGGAACTCCAAATAC+TGG | 0.430426 | 2.3:+12568840 | None:intergenic |
TTTCTTCTTTGAATTGTGGT+TGG | 0.440685 | 2.3:+12568671 | None:intergenic |
GAGGATTTCTTGGTAAAAGC+TGG | 0.453104 | 2.3:-12568589 | MS.gene034460:CDS |
GTCATTGAGGCTTATTCACC+AGG | 0.470334 | 2.3:+12567585 | None:intergenic |
AGACTGAATCACCAAGTTGT+TGG | 0.471123 | 2.3:+12568755 | None:intergenic |
ATCACCAAGTTGTTGGGAAC+TGG | 0.493001 | 2.3:+12568762 | None:intergenic |
CACACCAGTTCCCAACAACT+TGG | 0.498257 | 2.3:-12568766 | MS.gene034460:CDS |
TCCTCAAAAGTCATTTCTCC+AGG | 0.507331 | 2.3:+12568607 | None:intergenic |
CAATCAGCAAAGGTTCAAAA+GGG | 0.509524 | 2.3:-12567634 | MS.gene034460:CDS |
TTCGCTCCAATAGAACTTCA+GGG | 0.513014 | 2.3:+12568386 | None:intergenic |
TAGGAACTCATCCATGTTGA+GGG | 0.517404 | 2.3:+12568864 | None:intergenic |
TTGTGTAGTAGCTTCATCAC+TGG | 0.520796 | 2.3:+12568825 | None:intergenic |
ACGTTCTCGAGCAAGACGTC+AGG | 0.524988 | 2.3:-12568326 | MS.gene034460:intron |
ACCAGAAAGAGGATAATTGA+TGG | 0.532983 | 2.3:-12568412 | MS.gene034460:CDS |
TCCAGTTTGCAAGAAAACTT+CGG | 0.535572 | 2.3:-12568722 | MS.gene034460:CDS |
AAAGTTCTTGAAATCATCTA+GGG | 0.543413 | 2.3:+12568891 | None:intergenic |
GCAAAGAAAGCAATCAGCAA+AGG | 0.559335 | 2.3:-12567644 | MS.gene034460:CDS |
TTGTCGTTTCAGAATCATAG+TGG | 0.559475 | 2.3:-12568544 | MS.gene034460:CDS |
CGCTCCAATAGAACTTCAGG+GGG | 0.565451 | 2.3:+12568388 | None:intergenic |
CTAGGAACTCATCCATGTTG+AGG | 0.566833 | 2.3:+12568863 | None:intergenic |
CTCAAGAAGCAAGAAACACC+TGG | 0.571531 | 2.3:-12568625 | MS.gene034460:CDS |
AGGCTGAAGCTGAGAACAAG+AGG | 0.580689 | 2.3:-12567766 | MS.gene034460:CDS |
TGGAACTCCAAATACTGGCT+AGG | 0.584202 | 2.3:+12568845 | None:intergenic |
TCTACAACAATTAGATCAAG+AGG | 0.584508 | 2.3:-12568944 | MS.gene034460:CDS |
AATCAAGCTCAAGCACAACC+TGG | 0.585556 | 2.3:-12567603 | MS.gene034460:CDS |
GTGGAGCTGCTACCAGAAAG+AGG | 0.587980 | 2.3:-12568423 | MS.gene034460:CDS |
GGCTTATACAATAGAGCTAG+AGG | 0.593351 | 2.3:-12567936 | MS.gene034460:CDS |
GAACTTTGACTCCCTCAACA+TGG | 0.606896 | 2.3:-12568875 | MS.gene034460:CDS |
GCAACATACCAAATGACAAG+TGG | 0.610150 | 2.3:-12568457 | MS.gene034460:CDS |
ACAAGTGGAGCTGAGTCAAG+TGG | 0.615825 | 2.3:-12568442 | MS.gene034460:CDS |
CCAGAACTTGCAATATTCAG+TGG | 0.629052 | 2.3:+12568499 | None:intergenic |
TCGCTCCAATAGAACTTCAG+GGG | 0.629189 | 2.3:+12568387 | None:intergenic |
TGAGAACAAGAGGAAACAAG+AGG | 0.643173 | 2.3:-12567756 | MS.gene034460:intron |
AATCAGCAAAGGTTCAAAAG+GGG | 0.678708 | 2.3:-12567633 | MS.gene034460:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TACTTATTAATCACATAACT+TGG | - | chr2.3:12568291-12568310 | MS.gene034460:intron | 20.0% |
!!! | TACCTATTTAAATCTGAAAT+AGG | - | chr2.3:12568763-12568782 | MS.gene034460:CDS | 20.0% |
!!! | TTATTTTCTTCTTTGAATTG+TGG | + | chr2.3:12567885-12567904 | None:intergenic | 20.0% |
!!! | TTTTTTATATGCAAACGTTA+CGG | + | chr2.3:12568578-12568597 | None:intergenic | 20.0% |
! | AAAAAAAAATCTTGCAATGC+AGG | - | chr2.3:12568592-12568611 | MS.gene034460:CDS | 25.0% |
! | AAAGTTCTTGAAATCATCTA+GGG | + | chr2.3:12567661-12567680 | None:intergenic | 25.0% |
! | AATGATGAAAAATCGAGAAT+CGG | - | chr2.3:12568196-12568215 | MS.gene034460:intron | 25.0% |
! | AGCCTATTTCAGATTTAAAT+AGG | + | chr2.3:12568768-12568787 | None:intergenic | 25.0% |
! | CAATACTGAAACTGAATATA+CGG | - | chr2.3:12568691-12568710 | MS.gene034460:CDS | 25.0% |
! | TAAAATGCTGAAACAATTTC+TGG | - | chr2.3:12568664-12568683 | MS.gene034460:CDS | 25.0% |
!! | AGATTTTAAATAACAGTCTG+TGG | - | chr2.3:12568473-12568492 | MS.gene034460:CDS | 25.0% |
!!! | ATGTCTCTGAAATTAAAGTT+GGG | - | chr2.3:12568528-12568547 | MS.gene034460:CDS | 25.0% |
!!! | TATGTCTCTGAAATTAAAGT+TGG | - | chr2.3:12568527-12568546 | MS.gene034460:CDS | 25.0% |
CAAAGTTCTTGAAATCATCT+AGG | + | chr2.3:12567662-12567681 | None:intergenic | 30.0% | |
TAAAATCGTGTTTACCTTTG+CGG | - | chr2.3:12568335-12568354 | MS.gene034460:CDS | 30.0% | |
TCTACAACAATTAGATCAAG+AGG | - | chr2.3:12567605-12567624 | MS.gene034460:CDS | 30.0% | |
TTTCTTCTTTGAATTGTGGT+TGG | + | chr2.3:12567881-12567900 | None:intergenic | 30.0% | |
! | TGAGTGTCTCATTTCTTTTA+AGG | + | chr2.3:12567908-12567927 | None:intergenic | 30.0% |
!! | AATGACTTTTGAGGATTTCT+TGG | - | chr2.3:12567950-12567969 | MS.gene034460:intron | 30.0% |
!!! | TGGTTGGTTTTTATGAATCT+CGG | + | chr2.3:12567865-12567884 | None:intergenic | 30.0% |
AAATCCAACACAAATGTGAC+AGG | - | chr2.3:12568385-12568404 | MS.gene034460:CDS | 35.0% | |
AATCAGCAAAGGTTCAAAAG+GGG | - | chr2.3:12568916-12568935 | MS.gene034460:CDS | 35.0% | |
ACCAGAAAGAGGATAATTGA+TGG | - | chr2.3:12568137-12568156 | MS.gene034460:intron | 35.0% | |
ACCATCAATTATCCTCTTTC+TGG | + | chr2.3:12568141-12568160 | None:intergenic | 35.0% | |
AGAAAACTTCGGATGAAGTT+TGG | - | chr2.3:12567838-12567857 | MS.gene034460:intron | 35.0% | |
CAATCAGCAAAGGTTCAAAA+GGG | - | chr2.3:12568915-12568934 | MS.gene034460:CDS | 35.0% | |
TCCAGTTTGCAAGAAAACTT+CGG | - | chr2.3:12567827-12567846 | MS.gene034460:intron | 35.0% | |
TTATGTCACAGCCTAAATCA+CGG | + | chr2.3:12568499-12568518 | None:intergenic | 35.0% | |
TTGGATTTATCGCGAAATCA+AGG | + | chr2.3:12568373-12568392 | None:intergenic | 35.0% | |
! | TTGTCGTTTCAGAATCATAG+TGG | - | chr2.3:12568005-12568024 | MS.gene034460:intron | 35.0% |
!! | CTCTGAAATTAAAGTTGGGA+CGG | - | chr2.3:12568532-12568551 | MS.gene034460:CDS | 35.0% |
AGACTGAATCACCAAGTTGT+TGG | + | chr2.3:12567797-12567816 | None:intergenic | 40.0% | |
ATCACTGGAACTCCAAATAC+TGG | + | chr2.3:12567712-12567731 | None:intergenic | 40.0% | |
ATGAGTTCCTAGCCAGTATT+TGG | - | chr2.3:12567697-12567716 | MS.gene034460:intron | 40.0% | |
CCACTGAATATTGCAAGTTC+TGG | - | chr2.3:12568050-12568069 | MS.gene034460:intron | 40.0% | |
CCAGAACTTGCAATATTCAG+TGG | + | chr2.3:12568053-12568072 | None:intergenic | 40.0% | |
GACTGAATCACCAAGTTGTT+GGG | + | chr2.3:12567796-12567815 | None:intergenic | 40.0% | |
GAGGATTTCTTGGTAAAAGC+TGG | - | chr2.3:12567960-12567979 | MS.gene034460:intron | 40.0% | |
GCAAAGAAAGCAATCAGCAA+AGG | - | chr2.3:12568905-12568924 | MS.gene034460:CDS | 40.0% | |
GCAACATACCAAATGACAAG+TGG | - | chr2.3:12568092-12568111 | MS.gene034460:intron | 40.0% | |
GCAATCAGCAAAGGTTCAAA+AGG | - | chr2.3:12568914-12568933 | MS.gene034460:CDS | 40.0% | |
GGCTTATACAATAGAGCTAG+AGG | - | chr2.3:12568613-12568632 | MS.gene034460:CDS | 40.0% | |
GTGATTTAGGCTGTGACATA+AGG | - | chr2.3:12568498-12568517 | MS.gene034460:CDS | 40.0% | |
TAGGAACTCATCCATGTTGA+GGG | + | chr2.3:12567688-12567707 | None:intergenic | 40.0% | |
TCCTCAAAAGTCATTTCTCC+AGG | + | chr2.3:12567945-12567964 | None:intergenic | 40.0% | |
TGAACCTGTCACATTTGTGT+TGG | + | chr2.3:12568392-12568411 | None:intergenic | 40.0% | |
TGAGAACAAGAGGAAACAAG+AGG | - | chr2.3:12568793-12568812 | MS.gene034460:CDS | 40.0% | |
TTCGCTCCAATAGAACTTCA+GGG | + | chr2.3:12568166-12568185 | None:intergenic | 40.0% | |
TTGTGTAGTAGCTTCATCAC+TGG | + | chr2.3:12567727-12567746 | None:intergenic | 40.0% | |
TTTCGCTCCAATAGAACTTC+AGG | + | chr2.3:12568167-12568186 | None:intergenic | 40.0% | |
! | ACCTGGAGAAATGACTTTTG+AGG | - | chr2.3:12567941-12567960 | MS.gene034460:intron | 40.0% |
! | CTTGTCATTTGGTATGTTGC+AGG | + | chr2.3:12568092-12568111 | None:intergenic | 40.0% |
! | GAAGTTTTCTTGCAAACTGG+AGG | + | chr2.3:12567828-12567847 | None:intergenic | 40.0% |
! | TCCGAAGTTTTCTTGCAAAC+TGG | + | chr2.3:12567831-12567850 | None:intergenic | 40.0% |
! | TTTTCTTGCAAACTGGAGGA+GGG | + | chr2.3:12567824-12567843 | None:intergenic | 40.0% |
!! | TAGGGTAAGTGCGTTTTGAT+TGG | + | chr2.3:12567643-12567662 | None:intergenic | 40.0% |
!!! | GTAAGTGCGTTTTGATTGGT+CGG | + | chr2.3:12567639-12567658 | None:intergenic | 40.0% |
AAAGTCTGTGACCGTGATTG+AGG | + | chr2.3:12568416-12568435 | None:intergenic | 45.0% | |
AATCAAGCTCAAGCACAACC+TGG | - | chr2.3:12568946-12568965 | MS.gene034460:CDS | 45.0% | |
ACTCAGCTCCACTTGTCATT+TGG | + | chr2.3:12568103-12568122 | None:intergenic | 45.0% | |
ATCACCAAGTTGTTGGGAAC+TGG | + | chr2.3:12567790-12567809 | None:intergenic | 45.0% | |
CTAGGAACTCATCCATGTTG+AGG | + | chr2.3:12567689-12567708 | None:intergenic | 45.0% | |
CTCAAGAAGCAAGAAACACC+TGG | - | chr2.3:12567924-12567943 | MS.gene034460:CDS | 45.0% | |
GAACTTTGACTCCCTCAACA+TGG | - | chr2.3:12567674-12567693 | MS.gene034460:intron | 45.0% | |
TCGCTCCAATAGAACTTCAG+GGG | + | chr2.3:12568165-12568184 | None:intergenic | 45.0% | |
! | GCAAACGTTACGGACTATCA+CGG | + | chr2.3:12568568-12568587 | None:intergenic | 45.0% |
! | GTTTTCTTGCAAACTGGAGG+AGG | + | chr2.3:12567825-12567844 | None:intergenic | 45.0% |
! | TGGAACTCCAAATACTGGCT+AGG | + | chr2.3:12567707-12567726 | None:intergenic | 45.0% |
! | TTGGAGAGTGCATCTGTGTA+AGG | - | chr2.3:12568310-12568329 | MS.gene034460:intron | 45.0% |
ACAAGTGGAGCTGAGTCAAG+TGG | - | chr2.3:12568107-12568126 | MS.gene034460:intron | 50.0% | |
ACAGTCTGTGGCCGTGATTT+AGG | - | chr2.3:12568485-12568504 | MS.gene034460:CDS | 50.0% | |
AGGCTGAAGCTGAGAACAAG+AGG | - | chr2.3:12568783-12568802 | MS.gene034460:CDS | 50.0% | |
CACACCAGTTCCCAACAACT+TGG | - | chr2.3:12567783-12567802 | MS.gene034460:intron | 50.0% | |
CGCTCCAATAGAACTTCAGG+GGG | + | chr2.3:12568164-12568183 | None:intergenic | 50.0% | |
GACAGGTTCAGCCTCAATCA+CGG | - | chr2.3:12568402-12568421 | MS.gene034460:CDS | 50.0% | |
TGGTCCCCCTGAAGTTCTAT+TGG | - | chr2.3:12568157-12568176 | MS.gene034460:intron | 50.0% | |
ACGTTCTCGAGCAAGACGTC+AGG | - | chr2.3:12568223-12568242 | MS.gene034460:intron | 55.0% | |
GGATTGTGAAGCGACCGCAA+AGG | + | chr2.3:12568352-12568371 | None:intergenic | 55.0% | |
GTGGAGCTGCTACCAGAAAG+AGG | - | chr2.3:12568126-12568145 | MS.gene034460:intron | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.3 | gene | 12567600 | 12568971 | 12567600 | ID=MS.gene034460 |
chr2.3 | mRNA | 12567600 | 12568971 | 12567600 | ID=MS.gene034460.t1;Parent=MS.gene034460 |
chr2.3 | exon | 12568327 | 12568971 | 12568327 | ID=MS.gene034460.t1.exon1;Parent=MS.gene034460.t1 |
chr2.3 | CDS | 12568327 | 12568971 | 12568327 | ID=cds.MS.gene034460.t1;Parent=MS.gene034460.t1 |
chr2.3 | exon | 12567886 | 12567957 | 12567886 | ID=MS.gene034460.t1.exon2;Parent=MS.gene034460.t1 |
chr2.3 | CDS | 12567886 | 12567957 | 12567886 | ID=cds.MS.gene034460.t1;Parent=MS.gene034460.t1 |
chr2.3 | exon | 12567757 | 12567786 | 12567757 | ID=MS.gene034460.t1.exon3;Parent=MS.gene034460.t1 |
chr2.3 | CDS | 12567757 | 12567786 | 12567757 | ID=cds.MS.gene034460.t1;Parent=MS.gene034460.t1 |
chr2.3 | exon | 12567600 | 12567671 | 12567600 | ID=MS.gene034460.t1.exon4;Parent=MS.gene034460.t1 |
chr2.3 | CDS | 12567600 | 12567671 | 12567600 | ID=cds.MS.gene034460.t1;Parent=MS.gene034460.t1 |
Gene Sequence |
Protein sequence |