AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene034461

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene034461.t1 MTR_2g086340 88.644 317 34 2 1 317 1 315 0.0 544
MS.gene034461.t1 MTR_2g086390 67.893 299 62 5 1 298 1 266 6.13e-138 392
MS.gene034461.t1 MTR_2g086390 67.128 289 61 5 1 288 1 256 1.16e-130 374
MS.gene034461.t1 MTR_8g043960 37.676 284 130 11 25 285 26 285 9.85e-37 134
MS.gene034461.t1 MTR_3g010660 37.884 293 140 15 20 285 17 294 1.91e-35 131
MS.gene034461.t1 MTR_7g088090 33.546 313 143 12 12 286 8 293 2.82e-32 122
MS.gene034461.t1 MTR_7g104480 47.761 134 57 4 29 149 45 178 3.12e-29 116
MS.gene034461.t1 MTR_7g104480 43.373 166 63 4 168 317 272 422 1.21e-20 92.4
MS.gene034461.t1 MTR_6g026800 36.271 295 137 12 24 285 17 293 4.17e-25 103
MS.gene034461.t1 MTR_3g101780 42.748 131 60 6 24 151 28 146 6.04e-20 90.5
MS.gene034461.t1 MTR_3g101780 68.421 57 18 0 229 285 339 395 1.06e-15 77.8
MS.gene034461.t1 MTR_4g085910 34.559 136 69 4 24 151 19 142 7.48e-15 75.1
MS.gene034461.t1 MTR_4g085910 73.469 49 13 0 241 289 300 348 1.19e-13 71.6
MS.gene034461.t1 MTR_7g015990 60.377 53 17 2 237 285 114 166 6.54e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene034461.t1 AT3G44460 43.574 319 149 9 7 311 16 317 1.55e-60 197
MS.gene034461.t1 AT2G36270 35.369 393 126 10 20 298 34 412 2.62e-55 186
MS.gene034461.t1 AT2G36270 35.204 392 126 10 20 297 34 411 4.58e-55 186
MS.gene034461.t1 AT2G36270 35.204 392 126 10 20 297 34 411 4.58e-55 186
MS.gene034461.t1 AT3G56850 39.427 279 124 12 25 285 18 269 2.37e-40 143
MS.gene034461.t1 AT2G41070 34.211 266 125 7 24 286 17 235 8.89e-35 127
MS.gene034461.t1 AT2G41070 34.211 266 125 7 24 286 17 235 1.49e-34 127
MS.gene034461.t1 AT2G41070 34.211 266 125 7 24 286 17 235 1.49e-34 127
MS.gene034461.t1 AT2G41070 34.211 266 125 7 24 286 17 235 1.49e-34 127
MS.gene034461.t1 AT2G41070 34.211 266 125 7 24 286 26 244 1.91e-34 127
MS.gene034461.t1 AT1G45249 29.730 370 152 12 24 285 22 391 2.74e-27 111
MS.gene034461.t1 AT1G49720 39.568 139 69 5 21 149 20 153 5.44e-20 90.5
MS.gene034461.t1 AT1G49720 62.903 62 22 1 240 300 310 371 1.43e-14 74.3
MS.gene034461.t1 AT1G49720 39.568 139 69 5 21 149 20 153 7.01e-20 89.7
MS.gene034461.t1 AT1G49720 72.000 50 14 0 240 289 310 359 5.18e-14 72.8
MS.gene034461.t1 AT1G49720 39.568 139 69 5 21 149 20 153 7.01e-20 89.7
MS.gene034461.t1 AT1G49720 72.000 50 14 0 240 289 310 359 5.18e-14 72.8
MS.gene034461.t1 AT1G45249 35.294 153 88 2 24 165 37 189 9.18e-20 89.7
MS.gene034461.t1 AT1G45249 64.516 62 19 1 224 285 337 395 3.61e-15 76.3
MS.gene034461.t1 AT1G45249 35.294 153 88 2 24 165 37 189 9.18e-20 89.7
MS.gene034461.t1 AT1G45249 64.516 62 19 1 224 285 337 395 3.61e-15 76.3
MS.gene034461.t1 AT1G45249 35.294 153 88 2 24 165 22 174 1.02e-19 89.7
MS.gene034461.t1 AT1G45249 64.516 62 19 1 224 285 322 380 2.87e-15 76.6
MS.gene034461.t1 AT1G45249 35.294 153 88 2 24 165 22 174 1.98e-19 88.6
MS.gene034461.t1 AT1G45249 35.294 153 88 2 24 165 22 174 1.98e-19 88.6
MS.gene034461.t1 AT1G45249 35.294 153 88 2 24 165 22 174 2.34e-19 88.6
MS.gene034461.t1 AT1G45249 35.294 153 88 2 24 165 22 174 2.34e-19 88.6
MS.gene034461.t1 AT1G45249 35.294 153 88 2 24 165 22 174 2.34e-19 88.6
MS.gene034461.t1 AT1G45249 35.294 153 88 2 24 165 22 174 2.34e-19 88.6
MS.gene034461.t1 AT4G34000 31.532 222 96 6 24 201 28 237 6.32e-18 84.7
MS.gene034461.t1 AT4G34000 55.696 79 25 3 240 308 371 449 9.33e-15 75.1
MS.gene034461.t1 AT4G34000 31.532 222 96 6 24 201 28 237 7.34e-18 84.3
MS.gene034461.t1 AT4G34000 62.712 59 22 0 240 298 371 429 1.48e-14 74.7
MS.gene034461.t1 AT4G34000 31.532 222 96 6 24 201 28 237 7.34e-18 84.3
MS.gene034461.t1 AT4G34000 62.712 59 22 0 240 298 371 429 1.48e-14 74.7
MS.gene034461.t1 AT4G34000 31.532 222 96 6 24 201 28 237 7.34e-18 84.3
MS.gene034461.t1 AT4G34000 62.712 59 22 0 240 298 371 429 1.48e-14 74.7
MS.gene034461.t1 AT3G19290 37.063 143 77 4 24 153 35 177 1.08e-16 80.9
MS.gene034461.t1 AT3G19290 46.847 111 47 2 194 298 304 408 8.84e-16 78.2
MS.gene034461.t1 AT3G19290 37.063 143 77 4 24 153 35 177 1.39e-16 80.5
MS.gene034461.t1 AT3G19290 45.946 111 48 2 194 298 304 408 3.35e-15 76.3
MS.gene034461.t1 AT3G19290 37.063 143 77 4 24 153 35 177 1.39e-16 80.5
MS.gene034461.t1 AT3G19290 45.946 111 48 2 194 298 304 408 3.35e-15 76.3
MS.gene034461.t1 AT3G19290 37.063 143 77 4 24 153 35 177 1.42e-16 80.5
MS.gene034461.t1 AT3G19290 37.063 143 77 4 24 153 35 177 1.49e-16 80.5
MS.gene034461.t1 AT3G19290 46.364 110 47 2 194 297 304 407 4.83e-15 75.9
MS.gene034461.t1 AT5G44080 32.836 201 96 7 98 296 120 283 4.71e-16 78.2
MS.gene034461.t1 AT2G17770 31.016 187 107 6 100 284 1 167 1.11e-12 66.2
MS.gene034461.t1 AT5G42910 38.095 126 55 5 24 146 21 126 1.16e-12 68.6
MS.gene034461.t1 AT1G03970 30.457 197 96 5 98 294 85 240 1.21e-11 64.7

Find 66 sgRNAs with CRISPR-Local

Find 97 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTCACCAGGTTGTGCTTAT+AGG 0.185713 2.3:+12572045 None:intergenic
AATCATAATGGCAATGTTTC+AGG 0.221412 2.3:-12573076 MS.gene034461:CDS
TCTCTGTCCCTCCTCCAATT+TGG 0.252757 2.3:-12573279 MS.gene034461:CDS
TTGAATATTGCAAGTTGTTA+TGG 0.294474 2.3:-12573040 MS.gene034461:CDS
AATCAAGTGGGTGTAGTAAT+AGG 0.330386 2.3:-12572880 MS.gene034461:CDS
TGAAAATCTAAAACAAGTTC+TGG 0.355048 2.3:-12572385 MS.gene034461:intron
GTCATTGAGGCTTGTTCACC+AGG 0.361408 2.3:+12572032 None:intergenic
AACACTTGGAGAAATGAGTT+TGG 0.378783 2.3:-12573155 MS.gene034461:CDS
GCATTCAACAAAGGCTCAAA+AGG 0.385055 2.3:-12572097 MS.gene034461:CDS
TGTTATTCAGTGACAACATT+TGG 0.394761 2.3:+12572951 None:intergenic
ACTTACCTCTTGTTTCCTCT+TGG 0.402763 2.3:+12572235 None:intergenic
AGAATGAATTACCAAGTTGT+TGG 0.415586 2.3:+12573299 None:intergenic
AGCTCTTTCCACTCTTGCAT+TGG 0.422494 2.3:+12573434 None:intergenic
GAGGATTTCTTAGTAAAAGC+TGG 0.422923 2.3:-12573133 MS.gene034461:CDS
TGCAAGAGTGGAAAGAGCTT+TGG 0.423243 2.3:-12573430 MS.gene034461:CDS
ATGAATTCCTTGCCAGCATA+TGG 0.439595 2.3:-12573393 MS.gene034461:CDS
TTGCAAGTTGTTATGGTTTG+AGG 0.440862 2.3:-12573033 MS.gene034461:CDS
GAATGAATTACCAAGTTGTT+GGG 0.445076 2.3:+12573300 None:intergenic
TCTTGCATTGGAACTCATCA+AGG 0.446472 2.3:+12573446 None:intergenic
TTGCCATTCAAGAATCATAA+TGG 0.446766 2.3:-12573088 MS.gene034461:CDS
TTGCCATTATGATTCTTGAA+TGG 0.449693 2.3:+12573085 None:intergenic
ACTCAATGTGTGTCTAGAAA+TGG 0.449816 2.3:-12572986 MS.gene034461:CDS
TTATGGTTTGAGGCCTTCAA+TGG 0.451042 2.3:-12573023 MS.gene034461:CDS
GAAAATCCCATTCCCATTGA+AGG 0.469209 2.3:+12573010 None:intergenic
AGAAAACTGTGGATGAAGTT+TGG 0.470434 2.3:-12573255 MS.gene034461:CDS
TTGAGGCCTTCAATGGGAAT+GGG 0.472705 2.3:-12573016 MS.gene034461:CDS
CTCAAGAAGCAACAAACACT+TGG 0.475735 2.3:-12573169 MS.gene034461:CDS
TTATTTGTTTCTTTGAATTG+TGG 0.479374 2.3:+12573211 None:intergenic
CACACCGTTTCCCAACAACT+TGG 0.481051 2.3:-12573310 MS.gene034461:CDS
GCTTCTGCTTGTTCTTGCAA+TGG 0.484450 2.3:+12573514 None:intergenic
TTTGAGGCCTTCAATGGGAA+TGG 0.489129 2.3:-12573017 MS.gene034461:CDS
ATTACCAAGTTGTTGGGAAA+CGG 0.492082 2.3:+12573306 None:intergenic
TTGTTTCTTTGAATTGTGGT+TGG 0.500429 2.3:+12573215 None:intergenic
CTTCGCTCCACTACAACATC+AGG 0.510329 2.3:+12572836 None:intergenic
TAATAGGAAGAGGATAATTG+AGG 0.511054 2.3:-12572864 MS.gene034461:CDS
GTCATTAGAACTCCATATGC+TGG 0.516405 2.3:+12573381 None:intergenic
GTGGGTGTAGTAATAGGAAG+AGG 0.522464 2.3:-12572874 MS.gene034461:CDS
ACTTGGAGAAATGAGTTTGG+AGG 0.522848 2.3:-12573152 MS.gene034461:CDS
AAGGAATTCATCCATGTTGA+GGG 0.524720 2.3:+12573405 None:intergenic
ATTGTCAAATCTTGTCATTG+AGG 0.525608 2.3:+12572019 None:intergenic
TAACAACTTGCAATATTCAA+TGG 0.527054 2.3:+12573043 None:intergenic
AATAGGAAGAGGATAATTGA+GGG 0.535141 2.3:-12572863 MS.gene034461:CDS
ATCTAATTGTTGTAGAGCCA+TGG 0.537356 2.3:+12573546 None:intergenic
TATGGTTTGAGGCCTTCAAT+GGG 0.547796 2.3:-12573022 MS.gene034461:CDS
TCGTTCTCGAGCAAGAAGAC+AGG 0.556810 2.3:-12572777 MS.gene034461:intron
TTGTCACTGAATAACAACTT+AGG 0.558145 2.3:-12572944 MS.gene034461:CDS
GAGCTTTGGTTCCCTCAACA+TGG 0.562617 2.3:-12573416 MS.gene034461:CDS
CATTCAACAAAGGCTCAAAA+GGG 0.564482 2.3:-12572096 MS.gene034461:CDS
GGCATATACATTAGAGCTAG+AGG 0.565644 2.3:-12572436 MS.gene034461:CDS
CAAGGAATTCATCCATGTTG+AGG 0.566750 2.3:+12573404 None:intergenic
TAGAACTCCATATGCTGGCA+AGG 0.571014 2.3:+12573386 None:intergenic
TCTACAACAATTAGATCAAG+AGG 0.593387 2.3:-12573539 MS.gene034461:CDS
TCCAATTTGGAAGAAAACTG+TGG 0.593419 2.3:-12573266 MS.gene034461:CDS
CTGATGTTGTAGTGGAGCGA+AGG 0.596622 2.3:-12572835 MS.gene034461:CDS
GCAACGAAAGCATTCAACAA+AGG 0.598492 2.3:-12572106 MS.gene034461:CDS
GATGAGTTCCAATGCAAGAG+TGG 0.607955 2.3:-12573442 MS.gene034461:CDS
GGGTCCTCCTGATGTTGTAG+TGG 0.611715 2.3:-12572843 MS.gene034461:CDS
GAATAACAACTTAGGAGTGA+AGG 0.616648 2.3:-12572936 MS.gene034461:CDS
CTTGCATTGGAACTCATCAA+GGG 0.629128 2.3:+12573447 None:intergenic
CGCTCCACTACAACATCAGG+AGG 0.642123 2.3:+12572839 None:intergenic
AGGCTGAAGCTGAGACCAAG+AGG 0.647700 2.3:-12572250 MS.gene034461:CDS
TGAGACCAAGAGGAAACAAG+AGG 0.662863 2.3:-12572240 MS.gene034461:CDS
GAAGGCCTATAAGCACAACC+TGG 0.668432 2.3:-12572050 MS.gene034461:CDS
CAAAGCTTGACTGAATCAAG+TGG 0.677316 2.3:-12572893 MS.gene034461:CDS
AGGAGTGAAGGAATGTGCTG+TGG 0.702551 2.3:-12572924 MS.gene034461:CDS
AAAGCTTGACTGAATCAAGT+GGG 0.724655 2.3:-12572892 MS.gene034461:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTCTATTTAAATATGAAAT+AGG - chr2.3:12573307-12573326 MS.gene034461:CDS 10.0%
!!! AAGTTGATATTTATATAACA+AGG - chr2.3:12573388-12573407 MS.gene034461:CDS 15.0%
!!! AGTTGATATTTATATAACAA+GGG - chr2.3:12573389-12573408 MS.gene034461:CDS 15.0%
!!! ATTGCAAGATATTTTTTTAT+AGG + chr2.3:12573118-12573137 None:intergenic 15.0%
!!! AAAATGCAGGTTTTAAAAAA+AGG + chr2.3:12572972-12572991 None:intergenic 20.0%
!!! TTATTTGTTTCTTTGAATTG+TGG + chr2.3:12572369-12572388 None:intergenic 20.0%
!!! TTCTTGTTTTTTTTTCTTCA+TGG - chr2.3:12573257-12573276 MS.gene034461:CDS 20.0%
! AAAAAAATATCTTGCAATGC+AGG - chr2.3:12573120-12573139 MS.gene034461:CDS 25.0%
! AAAAATTAAGAGCAATGAGA+AGG - chr2.3:12573509-12573528 MS.gene034461:CDS 25.0%
! AATGTTGAAAAATCGTGAAT+CGG - chr2.3:12572773-12572792 MS.gene034461:intron 25.0%
! CTTGATTTCGCAATAAATTA+TGG - chr2.3:12572908-12572927 MS.gene034461:CDS 25.0%
! TAACAACTTGCAATATTCAA+TGG + chr2.3:12572537-12572556 None:intergenic 25.0%
! TAATGTGAATCATAAAATGC+AGG + chr2.3:12572985-12573004 None:intergenic 25.0%
! TTGAATATTGCAAGTTGTTA+TGG - chr2.3:12572537-12572556 MS.gene034461:intron 25.0%
!! CTTTGTTATAGTTCTATGTA+AGG - chr2.3:12572847-12572866 MS.gene034461:CDS 25.0%
!! TGAAAATCTAAAACAAGTTC+TGG - chr2.3:12573192-12573211 MS.gene034461:CDS 25.0%
AATAGGAAGAGGATAATTGA+GGG - chr2.3:12572714-12572733 MS.gene034461:intron 30.0%
AATCATAATGGCAATGTTTC+AGG - chr2.3:12572501-12572520 MS.gene034461:intron 30.0%
AGAATGAATTACCAAGTTGT+TGG + chr2.3:12572281-12572300 None:intergenic 30.0%
CATAGAACTATAACAAAGAG+TGG + chr2.3:12572845-12572864 None:intergenic 30.0%
GAATGAATTACCAAGTTGTT+GGG + chr2.3:12572280-12572299 None:intergenic 30.0%
TAATAGGAAGAGGATAATTG+AGG - chr2.3:12572713-12572732 MS.gene034461:intron 30.0%
TATGATTCACATTAAGCTCA+AGG - chr2.3:12572991-12573010 MS.gene034461:CDS 30.0%
TCTACAACAATTAGATCAAG+AGG - chr2.3:12572038-12572057 MS.gene034461:CDS 30.0%
TGCTAAAAATGTTGCAACAA+CGG - chr2.3:12572242-12572261 MS.gene034461:CDS 30.0%
TGTTATTCAGTGACAACATT+TGG + chr2.3:12572629-12572648 None:intergenic 30.0%
TTGCCATTATGATTCTTGAA+TGG + chr2.3:12572495-12572514 None:intergenic 30.0%
TTGCCATTCAAGAATCATAA+TGG - chr2.3:12572489-12572508 MS.gene034461:intron 30.0%
TTGTCACTGAATAACAACTT+AGG - chr2.3:12572633-12572652 MS.gene034461:intron 30.0%
! TTGTTTCTTTGAATTGTGGT+TGG + chr2.3:12572365-12572384 None:intergenic 30.0%
!!! AGTATTGAGTTTTGTTTGCT+TGG + chr2.3:12572102-12572121 None:intergenic 30.0%
AAAGCTTGACTGAATCAAGT+GGG - chr2.3:12572685-12572704 MS.gene034461:intron 35.0%
AACACTTGGAGAAATGAGTT+TGG - chr2.3:12572422-12572441 MS.gene034461:CDS 35.0%
AAGGAATTCATCCATGTTGA+GGG + chr2.3:12572175-12572194 None:intergenic 35.0%
AATCAAGTGGGTGTAGTAAT+AGG - chr2.3:12572697-12572716 MS.gene034461:intron 35.0%
ACTCAATGTGTGTCTAGAAA+TGG - chr2.3:12572591-12572610 MS.gene034461:intron 35.0%
AGAAAACTGTGGATGAAGTT+TGG - chr2.3:12572322-12572341 MS.gene034461:intron 35.0%
ATGTTAGCAACTAGTTACCA+AGG + chr2.3:12573092-12573111 None:intergenic 35.0%
ATTACCAAGTTGTTGGGAAA+CGG + chr2.3:12572274-12572293 None:intergenic 35.0%
CATTCAACAAAGGCTCAAAA+GGG - chr2.3:12573481-12573500 MS.gene034461:CDS 35.0%
GAATAACAACTTAGGAGTGA+AGG - chr2.3:12572641-12572660 MS.gene034461:intron 35.0%
GAGGATTTCTTAGTAAAAGC+TGG - chr2.3:12572444-12572463 MS.gene034461:intron 35.0%
TCCAATTTGGAAGAAAACTG+TGG - chr2.3:12572311-12572330 MS.gene034461:intron 35.0%
TGTTAAGGCAACCTAAATTG+TGG + chr2.3:12573037-12573056 None:intergenic 35.0%
TTGCAAGTTGTTATGGTTTG+AGG - chr2.3:12572544-12572563 MS.gene034461:intron 35.0%
! ACAGTTTTCTTCCAAATTGG+AGG + chr2.3:12572312-12572331 None:intergenic 35.0%
! TCCACAGTTTTCTTCCAAAT+TGG + chr2.3:12572315-12572334 None:intergenic 35.0%
! TTTTCTTCCAAATTGGAGGA+GGG + chr2.3:12572308-12572327 None:intergenic 35.0%
AAATTATGGTCGAATGCGAC+AGG - chr2.3:12572922-12572941 MS.gene034461:CDS 40.0%
ACTTGGAGAAATGAGTTTGG+AGG - chr2.3:12572425-12572444 MS.gene034461:CDS 40.0%
ATCATGTCTGGTACAAACCT+TGG - chr2.3:12573072-12573091 MS.gene034461:CDS 40.0%
ATGAATTCCTTGCCAGCATA+TGG - chr2.3:12572184-12572203 MS.gene034461:intron 40.0%
CAAAGCTTGACTGAATCAAG+TGG - chr2.3:12572684-12572703 MS.gene034461:intron 40.0%
CAAGGAATTCATCCATGTTG+AGG + chr2.3:12572176-12572195 None:intergenic 40.0%
CTCAAGAAGCAACAAACACT+TGG - chr2.3:12572408-12572427 MS.gene034461:CDS 40.0%
CTTGCATTGGAACTCATCAA+GGG + chr2.3:12572133-12572152 None:intergenic 40.0%
GAAAATCCCATTCCCATTGA+AGG + chr2.3:12572570-12572589 None:intergenic 40.0%
GCATTCAACAAAGGCTCAAA+AGG - chr2.3:12573480-12573499 MS.gene034461:CDS 40.0%
GGCATATACATTAGAGCTAG+AGG - chr2.3:12573141-12573160 MS.gene034461:CDS 40.0%
GGTTTGTACCAGACATGATA+TGG + chr2.3:12573071-12573090 None:intergenic 40.0%
GTCATTAGAACTCCATATGC+TGG + chr2.3:12572199-12572218 None:intergenic 40.0%
TACGTCTGTGACCACAATTT+AGG - chr2.3:12573023-12573042 MS.gene034461:CDS 40.0%
TCTTGCATTGGAACTCATCA+AGG + chr2.3:12572134-12572153 None:intergenic 40.0%
TTGTACCAGACATGATATGG+CGG + chr2.3:12573068-12573087 None:intergenic 40.0%
! ACTTACCTCTTGTTTCCTCT+TGG + chr2.3:12573345-12573364 None:intergenic 40.0%
! GTTTTCTTCCAAATTGGAGG+AGG + chr2.3:12572309-12572328 None:intergenic 40.0%
! TATGGTTTGAGGCCTTCAAT+GGG - chr2.3:12572555-12572574 MS.gene034461:intron 40.0%
! TGAGTGTCTCGCTTCTTTTA+AGG + chr2.3:12572392-12572411 None:intergenic 40.0%
! TTATGGTTTGAGGCCTTCAA+TGG - chr2.3:12572554-12572573 MS.gene034461:intron 40.0%
!! GCAACGAAAGCATTCAACAA+AGG - chr2.3:12573471-12573490 MS.gene034461:CDS 40.0%
AGCTCTTTCCACTCTTGCAT+TGG + chr2.3:12572146-12572165 None:intergenic 45.0%
ATGGCGGTCAAATGCTGTTA+AGG + chr2.3:12573052-12573071 None:intergenic 45.0%
GATGAGTTCCAATGCAAGAG+TGG - chr2.3:12572135-12572154 MS.gene034461:intron 45.0%
GCTTCTGCTTGTTCTTGCAA+TGG + chr2.3:12572066-12572085 None:intergenic 45.0%
GTGGGTGTAGTAATAGGAAG+AGG - chr2.3:12572703-12572722 MS.gene034461:intron 45.0%
GTTCACCAGGTTGTGCTTAT+AGG + chr2.3:12573535-12573554 None:intergenic 45.0%
TAGAACTCCATATGCTGGCA+AGG + chr2.3:12572194-12572213 None:intergenic 45.0%
TGAGACCAAGAGGAAACAAG+AGG - chr2.3:12573337-12573356 MS.gene034461:CDS 45.0%
TGCAAGAGTGGAAAGAGCTT+TGG - chr2.3:12572147-12572166 MS.gene034461:intron 45.0%
TTGAGGCCTTCAATGGGAAT+GGG - chr2.3:12572561-12572580 MS.gene034461:intron 45.0%
TTTGACCGCCATATCATGTC+TGG - chr2.3:12573060-12573079 MS.gene034461:CDS 45.0%
! TTTGAGGCCTTCAATGGGAA+TGG - chr2.3:12572560-12572579 MS.gene034461:intron 45.0%
AGGAGTGAAGGAATGTGCTG+TGG - chr2.3:12572653-12572672 MS.gene034461:intron 50.0%
AGTTGCAGTTACCTTCGCTG+TGG - chr2.3:12572875-12572894 MS.gene034461:CDS 50.0%
CACACCGTTTCCCAACAACT+TGG - chr2.3:12572267-12572286 MS.gene034461:intron 50.0%
CTTCGCTCCACTACAACATC+AGG + chr2.3:12572744-12572763 None:intergenic 50.0%
GAAGGCCTATAAGCACAACC+TGG - chr2.3:12573527-12573546 MS.gene034461:CDS 50.0%
GAATTGTGAAGCCACAGCGA+AGG + chr2.3:12572889-12572908 None:intergenic 50.0%
TCGTTCTCGAGCAAGAAGAC+AGG - chr2.3:12572800-12572819 MS.gene034461:CDS 50.0%
TCTCTGTCCCTCCTCCAATT+TGG - chr2.3:12572298-12572317 MS.gene034461:intron 50.0%
! CTGATGTTGTAGTGGAGCGA+AGG - chr2.3:12572742-12572761 MS.gene034461:intron 50.0%
! GAGCTTTGGTTCCCTCAACA+TGG - chr2.3:12572161-12572180 MS.gene034461:intron 50.0%
AAGGTCTGTGACCGTGATCG+AGG + chr2.3:12572953-12572972 None:intergenic 55.0%
AGGCTGAAGCTGAGACCAAG+AGG - chr2.3:12573327-12573346 MS.gene034461:CDS 55.0%
CGCTCCACTACAACATCAGG+AGG + chr2.3:12572741-12572760 None:intergenic 55.0%
GACAGGTTCAGCCTCGATCA+CGG - chr2.3:12572939-12572958 MS.gene034461:CDS 55.0%
GGGTCCTCCTGATGTTGTAG+TGG - chr2.3:12572734-12572753 MS.gene034461:intron 55.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 12572033 12573566 12572033 ID=MS.gene034461
chr2.3 mRNA 12572033 12573566 12572033 ID=MS.gene034461.t1;Parent=MS.gene034461
chr2.3 exon 12572778 12573566 12572778 ID=MS.gene034461.t1.exon1;Parent=MS.gene034461.t1
chr2.3 CDS 12572778 12573566 12572778 ID=cds.MS.gene034461.t1;Parent=MS.gene034461.t1
chr2.3 exon 12572386 12572457 12572386 ID=MS.gene034461.t1.exon2;Parent=MS.gene034461.t1
chr2.3 CDS 12572386 12572457 12572386 ID=cds.MS.gene034461.t1;Parent=MS.gene034461.t1
chr2.3 exon 12572237 12572270 12572237 ID=MS.gene034461.t1.exon3;Parent=MS.gene034461.t1
chr2.3 CDS 12572237 12572270 12572237 ID=cds.MS.gene034461.t1;Parent=MS.gene034461.t1
chr2.3 exon 12572033 12572133 12572033 ID=MS.gene034461.t1.exon4;Parent=MS.gene034461.t1
chr2.3 CDS 12572033 12572133 12572033 ID=cds.MS.gene034461.t1;Parent=MS.gene034461.t1
Gene Sequence

>MS.gene034461

ATGGCTCTACAACAATTAGATCAAGAGGTTCCATTGCAAGAACAAGCAGAAGCTACATTTTCTCAACCAAGCAAACAAAACTCAATACTCTCACTCACCCTTGATGAGTTCCAATGCAAGAGTGGAAAGAGCTTTGGTTCCCTCAACATGGATGAATTCCTTGCCAGCATATGGAGTTCTAATGACGAAGCTACAACTCAAACTCAAAATGCTAAAAATGTTGCAACAACGGAACACACCGTTTCCCAACAACTTGGTAATTCATTCTCTGTCCCTCCTCCAATTTGGAAGAAAACTGTGGATGAAGTTTGGTCTGAGATTCATAAAAACCAACCACAATTCAAAGAAACAAATAACCTTAAAAGAAGCGAGACACTCAAGAAGCAACAAACACTTGGAGAAATGAGTTTGGAGGATTTCTTAGTAAAAGCTGGAGTAGTACAACAATCATCAGCATTGCCATTCAAGAATCATAATGGCAATGTTTCAGGTAATATGAGACCATTGAATATTGCAAGTTGTTATGGTTTGAGGCCTTCAATGGGAATGGGATTTTCTACTCAATGTGTGTCTAGAAATGGTCTTGCAACATACCAAATGTTGTCACTGAATAACAACTTAGGAGTGAAGGAATGTGCTGTGGAGAAATGTCAAAGCTTGACTGAATCAAGTGGGTGTAGTAATAGGAAGAGGATAATTGAGGGTCCTCCTGATGTTGTAGTGGAGCGAAGGCAACGTAGAATGTTGAAAAATCGTGAATCGGCTGCTCGTTCTCGAGCAAGAAGACAGGTTTTTGTGTTCATCATACTCCACTCTTTGTTATAGTTCTATGTAAGGTTTAAAGTTGCAGTTACCTTCGCTGTGGCTTCACAATTCTTGATTTCGCAATAAATTATGGTCGAATGCGACAGGTTCAGCCTCGATCACGGTCACAGACCTTTTTTTAAAACCTGCATTTTATGATTCACATTAAGCTCAAGGTTTTAAATATACGTCTGTGACCACAATTTAGGTTGCCTTAACAGCATTTGACCGCCATATCATGTCTGGTACAAACCTTGGTAACTAGTTGCTAACATTTGCCTATAAAAAAATATCTTGCAATGCAGGCATATACATTAGAGCTAGAGGCAGAGCTGAATCTGCTAAAAGAAGAGAATGAAAATCTAAAACAAGTTCTGGTAAACAATACTGAAATTCAATATTCTGTTCTTTCTTTCTTATTTCTTGTTTTTTTTTCTTCATGGTTTATGTCTTCTGATGCTTAACATATATTTCTATTTAAATATGAAATAGGCTGAAGCTGAGACCAAGAGGAAACAAGAGGTAAGTGATTGATTATATGTTTCAAATATAAGTTGATATTTATATAACAAGGGCTAATATTACTAACATCATTGTGAATGTTTGTTTATTATTATATATTGCTACAGCTTTTGCAACGAAAGCATTCAACAAAGGCTCAAAAGGGCGCACAAAAATTAAGAGCAATGAGAAGGCCTATAAGCACAACCTGGTGAACAAGCCTCAATGA
Protein sequence

>MS.gene034461.t1

MALQQLDQEVPLQEQAEATFSQPSKQNSILSLTLDEFQCKSGKSFGSLNMDEFLASIWSSNDEATTQTQNAKNVATTEHTVSQQLGNSFSVPPPIWKKTVDEVWSEIHKNQPQFKETNNLKRSETLKKQQTLGEMSLEDFLVKAGVVQQSSALPFKNHNGNVSGNMRPLNIASCYGLRPSMGMGFSTQCVSRNGLATYQMLSLNNNLGVKECAVEKCQSLTESSGCSNRKRIIEGPPDVVVERRQRRMLKNRESAARSRARRQAYTLELEAELNLLKEENENLKQVLAEAETKRKQEVTFATKAFNKGSKGRTKIKSNEKAYKHNLVNKPQ