Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034494.t1 | XP_013467665.1 | 96.6 | 293 | 7 | 1 | 1 | 290 | 1 | 293 | 3.10E-160 | 574.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034494.t1 | Q7F8R0 | 58.9 | 299 | 100 | 7 | 4 | 287 | 6 | 296 | 3.4e-86 | 319.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034494.t1 | A0A072VIQ3 | 96.6 | 293 | 7 | 1 | 1 | 290 | 1 | 293 | 2.3e-160 | 574.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene034494.t1 | TF | C3H |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034494.t1 | MTR_1g053960 | 96.587 | 293 | 7 | 1 | 1 | 290 | 1 | 293 | 0.0 | 575 |
| MS.gene034494.t1 | MTR_1g053960 | 96.035 | 227 | 6 | 1 | 67 | 290 | 1 | 227 | 7.79e-159 | 441 |
| MS.gene034494.t1 | MTR_7g093130 | 70.395 | 304 | 70 | 9 | 1 | 287 | 1 | 301 | 9.58e-136 | 386 |
| MS.gene034494.t1 | MTR_1g116940 | 58.462 | 260 | 95 | 6 | 40 | 290 | 3 | 258 | 6.89e-100 | 293 |
| MS.gene034494.t1 | MTR_7g093130 | 70.940 | 234 | 52 | 7 | 67 | 287 | 1 | 231 | 8.40e-100 | 292 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034494.t1 | AT3G12130 | 51.495 | 301 | 81 | 9 | 1 | 290 | 1 | 247 | 3.69e-82 | 248 |
| MS.gene034494.t1 | AT5G06770 | 51.402 | 214 | 88 | 7 | 87 | 290 | 10 | 217 | 1.90e-58 | 186 |
| MS.gene034494.t1 | AT5G06770 | 71.698 | 53 | 15 | 0 | 20 | 72 | 4 | 56 | 7.50e-21 | 89.0 |
| MS.gene034494.t1 | AT5G06770 | 51.402 | 214 | 88 | 7 | 87 | 290 | 32 | 239 | 2.96e-58 | 187 |
| MS.gene034494.t1 | AT5G06770 | 67.949 | 78 | 19 | 2 | 1 | 72 | 1 | 78 | 9.04e-29 | 110 |
| MS.gene034494.t1 | AT5G06770 | 51.741 | 201 | 81 | 7 | 100 | 290 | 18 | 212 | 6.42e-55 | 177 |
| MS.gene034494.t1 | AT5G06770 | 51.741 | 201 | 81 | 7 | 100 | 290 | 18 | 212 | 6.42e-55 | 177 |
| MS.gene034494.t1 | AT5G06770 | 51.741 | 201 | 81 | 7 | 100 | 290 | 18 | 212 | 6.42e-55 | 177 |
| MS.gene034494.t1 | AT3G12130 | 63.924 | 158 | 49 | 4 | 139 | 290 | 20 | 175 | 2.17e-53 | 172 |
| MS.gene034494.t1 | AT5G06770 | 59.333 | 150 | 56 | 4 | 141 | 290 | 23 | 167 | 3.66e-51 | 166 |
Find 96 sgRNAs with CRISPR-Local
Find 255 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTTCAATGTTTCTAAGATT+TGG | 0.218015 | 1.1:-40543151 | None:intergenic |
| TCTGCTGAAGGCTGCAAATT+TGG | 0.233846 | 1.1:+40542845 | MS.gene034494:CDS |
| TTGGTCTTGATGTTTCTTCC+AGG | 0.287578 | 1.1:-40543298 | None:intergenic |
| ATGTTTCTTCCAGGTGCGGC+TGG | 0.289209 | 1.1:-40543289 | None:intergenic |
| CCCATTCACCATGGGCAAAA+TGG | 0.307326 | 1.1:-40542877 | None:intergenic |
| GTTCAATGTTTCTAAGATTT+GGG | 0.309393 | 1.1:-40543150 | None:intergenic |
| GATCAGTGTAGAAGCTTCTT+TGG | 0.311263 | 1.1:+40543036 | MS.gene034494:CDS |
| GGAGCACCCAGGGTGGATTT+AGG | 0.312131 | 1.1:-40543253 | None:intergenic |
| TAAGATTTGGGTCAGATTCA+TGG | 0.329032 | 1.1:-40543138 | None:intergenic |
| CAGGTTTAAGATTCATCATC+TGG | 0.330164 | 1.1:-40542736 | None:intergenic |
| ACTGATCTTGGCAGTGGAAT+TGG | 0.339065 | 1.1:-40543020 | None:intergenic |
| GCTAAAGGATCCTGCACATT+TGG | 0.348312 | 1.1:+40543337 | MS.gene034494:CDS |
| CACTTCTCACATCATGTTCC+CGG | 0.349238 | 1.1:+40542695 | MS.gene034494:CDS |
| ATCAACCCTCCCTCGTTTGC+GGG | 0.354317 | 1.1:-40539790 | None:intergenic |
| GGTCGAGTTGAGGCTCCTTC+TGG | 0.361759 | 1.1:+40542974 | MS.gene034494:CDS |
| TTGAAAATTTGACTCCTGTT+TGG | 0.371380 | 1.1:-40543108 | None:intergenic |
| AGGGTTGATGCTGCTGTTAA+TGG | 0.373294 | 1.1:+40539804 | MS.gene034494:CDS |
| TCTTTGGCTGGAGCTATCAT+TGG | 0.389153 | 1.1:+40543052 | MS.gene034494:CDS |
| GTTGAGGCTCCTTCTGGTCT+AGG | 0.393390 | 1.1:+40542980 | MS.gene034494:CDS |
| TCCACCCTGGGTGCTCCTGC+TGG | 0.401990 | 1.1:+40543259 | MS.gene034494:CDS |
| AGCATTGCTGGCTGTCCATT+TGG | 0.402746 | 1.1:+40542662 | MS.gene034494:intron |
| GGTGGGGCGGCAACATTTCT+AGG | 0.421558 | 1.1:-40542767 | None:intergenic |
| GGTCTAGGCGGTACTAGCTT+TGG | 0.431440 | 1.1:+40542995 | MS.gene034494:CDS |
| AGAAGCTTCTACACTGATCT+TGG | 0.443492 | 1.1:-40543032 | None:intergenic |
| AGCAAAATTCTCACACAGCT+TGG | 0.448378 | 1.1:-40543317 | None:intergenic |
| GCCGCTGAATTGCGAAAGAT+AGG | 0.451271 | 1.1:+40543385 | MS.gene034494:CDS |
| GGTGGTGGCCCAGCCGCACC+TGG | 0.454343 | 1.1:+40543280 | MS.gene034494:CDS |
| CTGGGTGCTCCTGCTGGTGG+TGG | 0.456820 | 1.1:+40543265 | MS.gene034494:CDS |
| GCAACAGAAATGGACTCAAC+TGG | 0.458170 | 1.1:+40540844 | MS.gene034494:intron |
| CATCAACCCTCCCTCGTTTG+CGG | 0.460993 | 1.1:-40539791 | None:intergenic |
| CTTAGAAACATTGAACTTGA+GGG | 0.465557 | 1.1:+40543157 | MS.gene034494:CDS |
| GGCATACGACCAACATTTGT+AGG | 0.466912 | 1.1:-40542950 | None:intergenic |
| ACAAATGTTGGTCGTATGCC+TGG | 0.469504 | 1.1:+40542953 | MS.gene034494:CDS |
| GCGGCTGGGCCACCACCAGC+AGG | 0.473223 | 1.1:-40543274 | None:intergenic |
| TTCGCAATTCAGCGGCTCCA+TGG | 0.475467 | 1.1:-40543378 | None:intergenic |
| AGTGTAGAAGCTTCTTTGGC+TGG | 0.476113 | 1.1:+40543040 | MS.gene034494:CDS |
| CCAACATTTGTAGGTGCCAT+TGG | 0.476227 | 1.1:-40542941 | None:intergenic |
| AAGCAGATATGTCGCCAAAC+AGG | 0.477279 | 1.1:+40543094 | MS.gene034494:CDS |
| TGTTTCTTCCAGGTGCGGCT+GGG | 0.483249 | 1.1:-40543288 | None:intergenic |
| TGCCCCACCTAAATCCACCC+TGG | 0.484995 | 1.1:+40543246 | MS.gene034494:CDS |
| TCATCAACTGATGGAGCAAA+AGG | 0.487156 | 1.1:-40542911 | None:intergenic |
| AAGTGACAACCCTCACCAAA+TGG | 0.487932 | 1.1:-40542677 | None:intergenic |
| TCGCAATTCAGCGGCTCCAT+GGG | 0.491844 | 1.1:-40543377 | None:intergenic |
| GCCCCACCTAAATCCACCCT+GGG | 0.494162 | 1.1:+40543247 | MS.gene034494:CDS |
| TGCTGGCTGTCCATTTGGTG+AGG | 0.513418 | 1.1:+40542667 | MS.gene034494:CDS |
| GGCTGGAGCTATCATTGGAA+AGG | 0.517932 | 1.1:+40543057 | MS.gene034494:CDS |
| CCATTGTTAGAGACTGGTGG+TGG | 0.518004 | 1.1:-40542785 | None:intergenic |
| ACATTTCTAGGAGGTGCAGC+AGG | 0.522238 | 1.1:-40542755 | None:intergenic |
| GCTGGCTGTCCATTTGGTGA+GGG | 0.526668 | 1.1:+40542668 | MS.gene034494:CDS |
| TCTTAGAAACATTGAACTTG+AGG | 0.528176 | 1.1:+40543156 | MS.gene034494:CDS |
| ACATCTTTCTCCAAATGTGC+AGG | 0.531941 | 1.1:-40543347 | None:intergenic |
| ACCCTGGGTGCTCCTGCTGG+TGG | 0.535033 | 1.1:+40543262 | MS.gene034494:CDS |
| GCTGGAGCTATCATTGGAAA+GGG | 0.536163 | 1.1:+40543058 | MS.gene034494:CDS |
| CACCCAGGGTGGATTTAGGT+GGG | 0.536478 | 1.1:-40543249 | None:intergenic |
| ACCGAGTTCCCATTCACCAT+GGG | 0.537718 | 1.1:-40542885 | None:intergenic |
| GGCAACGGCATTATAACCAC+CGG | 0.537881 | 1.1:-40542714 | None:intergenic |
| ACCACCAGCAGGAGCACCCA+GGG | 0.538705 | 1.1:-40543263 | None:intergenic |
| GCACCCAGGGTGGATTTAGG+TGG | 0.545220 | 1.1:-40543250 | None:intergenic |
| GCCCATGGTGAATGGGAACT+CGG | 0.546163 | 1.1:+40542884 | MS.gene034494:CDS |
| AACAAGTTTAATTCTGCTGA+AGG | 0.547801 | 1.1:+40542833 | MS.gene034494:CDS |
| TCCTATCTTTCGCAATTCAG+CGG | 0.550243 | 1.1:-40543386 | None:intergenic |
| GCAGAACCATTGTTAGAGAC+TGG | 0.559543 | 1.1:-40542791 | None:intergenic |
| CTAGTACCGCCTAGACCAGA+AGG | 0.560068 | 1.1:-40542989 | None:intergenic |
| TGGATGCCCGCAAACGAGGG+AGG | 0.563890 | 1.1:+40539784 | MS.gene034494:CDS |
| AAGATTCATCATCTGGGCAA+CGG | 0.568550 | 1.1:-40542729 | None:intergenic |
| GGACGGTGATCATCAACTGA+TGG | 0.568940 | 1.1:-40542920 | None:intergenic |
| CCAATGGCACCTACAAATGT+TGG | 0.569357 | 1.1:+40542941 | MS.gene034494:CDS |
| TTCTACACTGATCTTGGCAG+TGG | 0.569888 | 1.1:-40543026 | None:intergenic |
| CATTTGTAGGTGCCATTGGA+CGG | 0.575412 | 1.1:-40542937 | None:intergenic |
| CACCACCAGCAGGAGCACCC+AGG | 0.583302 | 1.1:-40543264 | None:intergenic |
| CAATGGATGCCCGCAAACGA+GGG | 0.583791 | 1.1:+40539781 | None:intergenic |
| GAAAGATGTCACTTTGCCCA+TGG | 0.584192 | 1.1:+40543361 | MS.gene034494:CDS |
| CTTGATGTTTCTTCCAGGTG+CGG | 0.585145 | 1.1:-40543293 | None:intergenic |
| ACAATGGATGCCCGCAAACG+AGG | 0.590226 | 1.1:+40539780 | None:intergenic |
| GAAATGGACTCAACTGGTGT+AGG | 0.590424 | 1.1:+40540850 | MS.gene034494:intron |
| AGGTTTAAGATTCATCATCT+GGG | 0.591191 | 1.1:-40542735 | None:intergenic |
| AATTAAACTTGTTACATATG+CGG | 0.591258 | 1.1:-40542823 | None:intergenic |
| CCACCACCAGTCTCTAACAA+TGG | 0.591961 | 1.1:+40542785 | MS.gene034494:CDS |
| TACCGAGTTCCCATTCACCA+TGG | 0.592664 | 1.1:-40542886 | None:intergenic |
| GGATGCCCGCAAACGAGGGA+GGG | 0.598945 | 1.1:+40539785 | MS.gene034494:CDS |
| AGTTGATGATCACCGTCCAA+TGG | 0.605823 | 1.1:+40542925 | MS.gene034494:CDS |
| ATTGTTAGAGACTGGTGGTG+GGG | 0.606388 | 1.1:-40542783 | None:intergenic |
| GAAGGAGCCTCAACTCGACC+AGG | 0.607588 | 1.1:-40542971 | None:intergenic |
| TCGTATGCCTGGTCGAGTTG+AGG | 0.614018 | 1.1:+40542964 | MS.gene034494:CDS |
| GGAGCTATCATTGGAAAGGG+TGG | 0.621933 | 1.1:+40543061 | MS.gene034494:CDS |
| GTTAGAGACTGGTGGTGGGG+CGG | 0.623695 | 1.1:-40542780 | None:intergenic |
| CATTGTTAGAGACTGGTGGT+GGG | 0.635968 | 1.1:-40542784 | None:intergenic |
| ACCCAGGGTGGATTTAGGTG+GGG | 0.640360 | 1.1:-40543248 | None:intergenic |
| AATTGCACAAGCAAGTAACA+TGG | 0.648235 | 1.1:+40543192 | MS.gene034494:CDS |
| TCCGTCAAGAAAACCAAACA+AGG | 0.648477 | 1.1:+40539828 | MS.gene034494:CDS |
| GCAACGGCATTATAACCACC+GGG | 0.654418 | 1.1:-40542713 | None:intergenic |
| TTCTCACATCATGTTCCCGG+TGG | 0.667160 | 1.1:+40542698 | MS.gene034494:CDS |
| GGGGCGGCAACATTTCTAGG+AGG | 0.676956 | 1.1:-40542764 | None:intergenic |
| ACCAGCAGGAGCACCCAGGG+TGG | 0.680551 | 1.1:-40543260 | None:intergenic |
| GAACCATTGTTAGAGACTGG+TGG | 0.695821 | 1.1:-40542788 | None:intergenic |
| GAGGCTCCTTCTGGTCTAGG+CGG | 0.707296 | 1.1:+40542983 | MS.gene034494:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTGCAATTTTATTTATA+TGG | - | chr1.1:40540084-40540103 | None:intergenic | 10.0% |
| !!! | TATTTTTTAAATTTAGTTGT+TGG | + | chr1.1:40540005-40540024 | MS.gene034494:intron | 10.0% |
| !! | AATAAATAAAAAGTTAGAAG+AGG | - | chr1.1:40539865-40539884 | None:intergenic | 15.0% |
| !! | CTATTTACAAGATAATAAAA+TGG | + | chr1.1:40541265-40541284 | MS.gene034494:intron | 15.0% |
| !! | TACTACATTTAATAATTTAG+AGG | + | chr1.1:40540790-40540809 | MS.gene034494:intron | 15.0% |
| !! | TTCAAAATATTTGTTTAGAT+AGG | - | chr1.1:40540922-40540941 | None:intergenic | 15.0% |
| !!! | AGATTTTAAAAATTACAATC+TGG | - | chr1.1:40541472-40541491 | None:intergenic | 15.0% |
| !!! | TTTTCATAACAATAATACTT+TGG | + | chr1.1:40542591-40542610 | MS.gene034494:intron | 15.0% |
| !! | ACAGAATAATGGTTTATTAA+TGG | + | chr1.1:40541056-40541075 | MS.gene034494:intron | 20.0% |
| !! | ATATTATAGGCAATGATATA+TGG | + | chr1.1:40542150-40542169 | MS.gene034494:intron | 20.0% |
| !! | ATCAAATTGTAACAGAATAA+TGG | + | chr1.1:40541045-40541064 | MS.gene034494:intron | 20.0% |
| !! | GTTTAGTCAATTAAGAAATA+CGG | + | chr1.1:40541644-40541663 | MS.gene034494:intron | 20.0% |
| !! | TTACAAGATAATAAAATGGT+TGG | + | chr1.1:40541269-40541288 | MS.gene034494:intron | 20.0% |
| !! | TTTAATTGATGTAACATAAC+AGG | - | chr1.1:40542008-40542027 | None:intergenic | 20.0% |
| !!! | AATTAAACTTGTTACATATG+CGG | - | chr1.1:40542826-40542845 | None:intergenic | 20.0% |
| !!! | TTAAACAGTTTTTTAAGTTC+AGG | - | chr1.1:40540399-40540418 | None:intergenic | 20.0% |
| !!! | TTATTTTGATAGTAGTTAAC+AGG | + | chr1.1:40542542-40542561 | MS.gene034494:intron | 20.0% |
| !!! | TTCTTTTAGATAAAGGTAAT+TGG | - | chr1.1:40540570-40540589 | None:intergenic | 20.0% |
| !!! | TTTAGGTTTCTTTTAGATAA+AGG | - | chr1.1:40540577-40540596 | None:intergenic | 20.0% |
| ! | AACTACTTAGTTGAAGTAAT+AGG | - | chr1.1:40541377-40541396 | None:intergenic | 25.0% |
| ! | AATTAAGAAATACGGAATTC+CGG | + | chr1.1:40541652-40541671 | MS.gene034494:intron | 25.0% |
| ! | ACATTCCTATATTCTTCTTA+AGG | + | chr1.1:40542496-40542515 | MS.gene034494:intron | 25.0% |
| ! | ACTACTTAGTTGAAGTAATA+GGG | - | chr1.1:40541376-40541395 | None:intergenic | 25.0% |
| ! | AGCAAGATTTACAGTAATTA+AGG | - | chr1.1:40541175-40541194 | None:intergenic | 25.0% |
| ! | ATGTTAGTATTAAAGAGAGT+TGG | - | chr1.1:40541949-40541968 | None:intergenic | 25.0% |
| ! | CATATCAATGGCTATAAAAT+TGG | - | chr1.1:40542274-40542293 | None:intergenic | 25.0% |
| ! | GCTGATAAGTCATTATTAAA+TGG | - | chr1.1:40541200-40541219 | None:intergenic | 25.0% |
| ! | TAATGGTTTATTAATGGAGT+TGG | + | chr1.1:40541062-40541081 | MS.gene034494:intron | 25.0% |
| ! | TACAAAATTTACAGTCGTAA+AGG | - | chr1.1:40541569-40541588 | None:intergenic | 25.0% |
| ! | TAGTTAACAGGAAATGAAAA+GGG | + | chr1.1:40542554-40542573 | MS.gene034494:intron | 25.0% |
| ! | TTGTTGGATTTATGTTTGTT+TGG | + | chr1.1:40540021-40540040 | MS.gene034494:intron | 25.0% |
| ! | TTTAGTGTAATTACAAGTGT+CGG | + | chr1.1:40540273-40540292 | MS.gene034494:intron | 25.0% |
| ! | TTTATTAATGGAGTTGGAAA+AGG | + | chr1.1:40541068-40541087 | MS.gene034494:intron | 25.0% |
| !! | ATTTTATAGCCATTGATATG+TGG | + | chr1.1:40542274-40542293 | MS.gene034494:intron | 25.0% |
| !! | GAATGTTATTTGTTAGCTTA+TGG | - | chr1.1:40542300-40542319 | None:intergenic | 25.0% |
| !! | TTAATGTTTTGCAACAGAAA+TGG | + | chr1.1:40540834-40540853 | MS.gene034494:intron | 25.0% |
| !!! | AAAATTGGTTTTCTTTCAGA+GGG | - | chr1.1:40542259-40542278 | None:intergenic | 25.0% |
| !!! | AGTTCAATGTTTCTAAGATT+TGG | - | chr1.1:40543154-40543173 | None:intergenic | 25.0% |
| !!! | CAATTACGGTTTAGAATTTT+GGG | - | chr1.1:40540600-40540619 | None:intergenic | 25.0% |
| !!! | GTTCAATGTTTCTAAGATTT+GGG | - | chr1.1:40543153-40543172 | None:intergenic | 25.0% |
| !!! | TAAAATTGGTTTTCTTTCAG+AGG | - | chr1.1:40542260-40542279 | None:intergenic | 25.0% |
| !!! | TCAACCATCTTTTTTTCAAT+AGG | + | chr1.1:40541916-40541935 | MS.gene034494:intron | 25.0% |
| !!! | TTCTTTCCTTTAGTTTTTCT+TGG | + | chr1.1:40541823-40541842 | MS.gene034494:intron | 25.0% |
| AACAAGTTTAATTCTGCTGA+AGG | + | chr1.1:40542833-40542852 | MS.gene034494:CDS | 30.0% | |
| AGATTAGAACCTGAAAAACT+TGG | - | chr1.1:40540896-40540915 | None:intergenic | 30.0% | |
| AGCACCTATTGAAAAAAAGA+TGG | - | chr1.1:40541923-40541942 | None:intergenic | 30.0% | |
| AGTTAACAGGAAATGAAAAG+GGG | + | chr1.1:40542555-40542574 | MS.gene034494:intron | 30.0% | |
| ATCTAATTCTGCATCTTAAC+TGG | + | chr1.1:40540980-40540999 | MS.gene034494:intron | 30.0% | |
| CATCTCTTGTAGCATATTAT+AGG | + | chr1.1:40542137-40542156 | MS.gene034494:intron | 30.0% | |
| CTACTTAGTTGAAGTAATAG+GGG | - | chr1.1:40541375-40541394 | None:intergenic | 30.0% | |
| CTTAGAAACATTGAACTTGA+GGG | + | chr1.1:40543157-40543176 | MS.gene034494:CDS | 30.0% | |
| CTTGTAAATAGCTTACCAAT+TGG | - | chr1.1:40541256-40541275 | None:intergenic | 30.0% | |
| GAAAAACTAAAGGAAAGAAC+AGG | - | chr1.1:40541822-40541841 | None:intergenic | 30.0% | |
| GATAATAAAATGGTTGGATC+AGG | + | chr1.1:40541275-40541294 | MS.gene034494:intron | 30.0% | |
| GTAGTTAACAGGAAATGAAA+AGG | + | chr1.1:40542553-40542572 | MS.gene034494:intron | 30.0% | |
| TAAATAGCTTACCAATTGGA+AGG | - | chr1.1:40541252-40541271 | None:intergenic | 30.0% | |
| TACTTAGTTGAAGTAATAGG+GGG | - | chr1.1:40541374-40541393 | None:intergenic | 30.0% | |
| TCTAATTCTGCATCTTAACT+GGG | + | chr1.1:40540981-40541000 | MS.gene034494:intron | 30.0% | |
| TCTGTGTTCTTGAATTTGAA+AGG | + | chr1.1:40539903-40539922 | MS.gene034494:intron | 30.0% | |
| TCTTAGAAACATTGAACTTG+AGG | + | chr1.1:40543156-40543175 | MS.gene034494:CDS | 30.0% | |
| TGCAAAACAAGAAAACATCA+TGG | - | chr1.1:40542643-40542662 | None:intergenic | 30.0% | |
| TTATAAGCCAACATAGAGTT+GGG | + | chr1.1:40542356-40542375 | MS.gene034494:intron | 30.0% | |
| TTCATCAACTAAAATCCCAT+TGG | + | chr1.1:40542093-40542112 | MS.gene034494:intron | 30.0% | |
| TTCCACCTTAAGAAGAATAT+AGG | - | chr1.1:40542504-40542523 | None:intergenic | 30.0% | |
| TTCCTATATTCTTCTTAAGG+TGG | + | chr1.1:40542499-40542518 | MS.gene034494:intron | 30.0% | |
| TTGAAAATTTGACTCCTGTT+TGG | - | chr1.1:40543111-40543130 | None:intergenic | 30.0% | |
| ! | AGCTTTTGGTAAAACATTAG+AGG | + | chr1.1:40541403-40541422 | MS.gene034494:intron | 30.0% |
| ! | AGGTTTAAGATTCATCATCT+GGG | - | chr1.1:40542738-40542757 | None:intergenic | 30.0% |
| ! | AGTTCAACTAAAGAAGCATA+TGG | - | chr1.1:40540183-40540202 | None:intergenic | 30.0% |
| ! | GGAAAAGGATAATAATTTGC+AGG | + | chr1.1:40541083-40541102 | MS.gene034494:intron | 30.0% |
| ! | TGTATATGGTGTTTAAAACG+AGG | - | chr1.1:40540536-40540555 | None:intergenic | 30.0% |
| ! | TTTAGGATGATTGCTTCAAT+TGG | + | chr1.1:40540652-40540671 | MS.gene034494:intron | 30.0% |
| !! | AAGTAGTTCTATCAAGCTTT+TGG | + | chr1.1:40541389-40541408 | MS.gene034494:intron | 30.0% |
| !! | GCAATTACGGTTTAGAATTT+TGG | - | chr1.1:40540601-40540620 | None:intergenic | 30.0% |
| !! | GTGTTTTGTTCACATAAATC+TGG | + | chr1.1:40541713-40541732 | MS.gene034494:intron | 30.0% |
| !! | TGGCTTTGATTTGATGTATA+TGG | - | chr1.1:40540550-40540569 | None:intergenic | 30.0% |
| AACACAGAACAAGCAATCAA+AGG | - | chr1.1:40541592-40541611 | None:intergenic | 35.0% | |
| AACCATATCATATCCACCAA+AGG | - | chr1.1:40542221-40542240 | None:intergenic | 35.0% | |
| AACCTGAAAAACTTGGTACA+AGG | - | chr1.1:40540889-40540908 | None:intergenic | 35.0% | |
| AATTGCACAAGCAAGTAACA+TGG | + | chr1.1:40543192-40543211 | MS.gene034494:CDS | 35.0% | |
| ACACAACTCTGTTGCAATTA+CGG | - | chr1.1:40540614-40540633 | None:intergenic | 35.0% | |
| ACTATATCAACCTTCAACTC+AGG | - | chr1.1:40540706-40540725 | None:intergenic | 35.0% | |
| AGATGAGAAAAACCAATGGT+AGG | - | chr1.1:40542122-40542141 | None:intergenic | 35.0% | |
| AGTGTGTGTTATCTAACCTT+TGG | + | chr1.1:40542202-40542221 | MS.gene034494:intron | 35.0% | |
| ATAGGCAATGATATATGGTG+TGG | + | chr1.1:40542155-40542174 | MS.gene034494:intron | 35.0% | |
| ATTTAGTGTTCCCATTGTCA+TGG | - | chr1.1:40541114-40541133 | None:intergenic | 35.0% | |
| CAAGAGATGAGAAAAACCAA+TGG | - | chr1.1:40542126-40542145 | None:intergenic | 35.0% | |
| CCTAATATTGAACCTTCTAC+CGG | - | chr1.1:40541674-40541693 | None:intergenic | 35.0% | |
| CGAATCAGAACAATGACTAT+CGG | - | chr1.1:40542322-40542341 | None:intergenic | 35.0% | |
| CTATATCAACCTTCAACTCA+GGG | - | chr1.1:40540705-40540724 | None:intergenic | 35.0% | |
| GAACAACTAAAACACTGCAA+TGG | - | chr1.1:40541759-40541778 | None:intergenic | 35.0% | |
| GCATAAACAAAGTTCTCTCT+TGG | - | chr1.1:40541345-40541364 | None:intergenic | 35.0% | |
| GGAAGACCAAGAAAAACTAA+AGG | - | chr1.1:40541832-40541851 | None:intergenic | 35.0% | |
| GGTGAAAAAGAAACCTTGTT+TGG | - | chr1.1:40539844-40539863 | None:intergenic | 35.0% | |
| GTTATAAGCCAACATAGAGT+TGG | + | chr1.1:40542355-40542374 | MS.gene034494:intron | 35.0% | |
| TAAGATTTGGGTCAGATTCA+TGG | - | chr1.1:40543141-40543160 | None:intergenic | 35.0% | |
| TGAACTATGAAGCACAGATA+CGG | + | chr1.1:40540197-40540216 | MS.gene034494:intron | 35.0% | |
| TTAGACACAGACGCATAATT+TGG | - | chr1.1:40541309-40541328 | None:intergenic | 35.0% | |
| TTATTGCTCTATGCTTGTCA+TGG | + | chr1.1:40540143-40540162 | MS.gene034494:intron | 35.0% | |
| TTTAGTGTTCCCATTGTCAT+GGG | - | chr1.1:40541113-40541132 | None:intergenic | 35.0% | |
| ! | AACCTTTGGTGGATATGATA+TGG | + | chr1.1:40542216-40542235 | MS.gene034494:intron | 35.0% |
| ! | AATCTAGACTTAGCTGGTTT+GGG | - | chr1.1:40541897-40541916 | None:intergenic | 35.0% |
| ! | CAGGTTTAAGATTCATCATC+TGG | - | chr1.1:40542739-40542758 | None:intergenic | 35.0% |
| ! | CTGTGTGAGAATTTTGCTAA+AGG | + | chr1.1:40543322-40543341 | MS.gene034494:CDS | 35.0% |
| ! | GGGTATTCTAAGCTTTATAC+AGG | + | chr1.1:40541001-40541020 | MS.gene034494:intron | 35.0% |
| !! | TCAGAGAGTGTTCAAAGTTT+AGG | + | chr1.1:40540635-40540654 | MS.gene034494:intron | 35.0% |
| !!! | ACCTTGTTTGGTTTTCTTGA+CGG | - | chr1.1:40539832-40539851 | None:intergenic | 35.0% |
| !!! | CGGTTTAGAATTTTGGGTTT+AGG | - | chr1.1:40540594-40540613 | None:intergenic | 35.0% |
| AAATACGGAATTCCGGTAGA+AGG | + | chr1.1:40541659-40541678 | MS.gene034494:intron | 40.0% | |
| AACCAATGGTAGGTTTCCAA+TGG | - | chr1.1:40542112-40542131 | None:intergenic | 40.0% | |
| AAGATTCATCATCTGGGCAA+CGG | - | chr1.1:40542732-40542751 | None:intergenic | 40.0% | |
| ACATCTTTCTCCAAATGTGC+AGG | - | chr1.1:40543350-40543369 | None:intergenic | 40.0% | |
| ACCAATGGTAGGTTTCCAAT+GGG | - | chr1.1:40542111-40542130 | None:intergenic | 40.0% | |
| AGAAGCTTCTACACTGATCT+TGG | - | chr1.1:40543035-40543054 | None:intergenic | 40.0% | |
| AGACTTCTGCATCATGTACA+AGG | + | chr1.1:40542027-40542046 | MS.gene034494:intron | 40.0% | |
| AGCAAAATTCTCACACAGCT+TGG | - | chr1.1:40543320-40543339 | None:intergenic | 40.0% | |
| AGCTTATGGCCACATATCAA+TGG | - | chr1.1:40542286-40542305 | None:intergenic | 40.0% | |
| ATAGCTTACCAATTGGAAGG+TGG | - | chr1.1:40541249-40541268 | None:intergenic | 40.0% | |
| CCGGTAGAAGGTTCAATATT+AGG | + | chr1.1:40541671-40541690 | MS.gene034494:intron | 40.0% | |
| GAATCTAGACTTAGCTGGTT+TGG | - | chr1.1:40541898-40541917 | None:intergenic | 40.0% | |
| GACTTCTGCATCATGTACAA+GGG | + | chr1.1:40542028-40542047 | MS.gene034494:intron | 40.0% | |
| GATCAGTGTAGAAGCTTCTT+TGG | + | chr1.1:40543036-40543055 | MS.gene034494:CDS | 40.0% | |
| GATGAAACCAGATCAACTCA+TGG | - | chr1.1:40542079-40542098 | None:intergenic | 40.0% | |
| GTGTGTTATCTAACCTTTGG+TGG | + | chr1.1:40542205-40542224 | MS.gene034494:intron | 40.0% | |
| TAGCTTACCAATTGGAAGGT+GGG | - | chr1.1:40541248-40541267 | None:intergenic | 40.0% | |
| TCATCAACTGATGGAGCAAA+AGG | - | chr1.1:40542914-40542933 | None:intergenic | 40.0% | |
| TCCGTCAAGAAAACCAAACA+AGG | + | chr1.1:40539828-40539847 | MS.gene034494:CDS | 40.0% | |
| TCCTATCTTTCGCAATTCAG+CGG | - | chr1.1:40543389-40543408 | None:intergenic | 40.0% | |
| TGCTTGTTCTGTGTTTACGT+AGG | + | chr1.1:40541597-40541616 | MS.gene034494:intron | 40.0% | |
| TGGTTGAATCTAGACTTAGC+TGG | - | chr1.1:40541903-40541922 | None:intergenic | 40.0% | |
| TTCGACAACAGAGTTTCAGA+GGG | - | chr1.1:40540428-40540447 | None:intergenic | 40.0% | |
| TTGCTTCAACCTATGAAGCA+TGG | - | chr1.1:40540346-40540365 | None:intergenic | 40.0% | |
| ! | ATTGCTTCAATTGGAAGCAC+AGG | + | chr1.1:40540661-40540680 | MS.gene034494:intron | 40.0% |
| ! | TCTGATTCGCATTATCTGAC+TGG | + | chr1.1:40542333-40542352 | MS.gene034494:intron | 40.0% |
| !! | AGCCTTGTACCAAGTTTTTC+AGG | + | chr1.1:40540884-40540903 | MS.gene034494:CDS | 40.0% |
| !! | TCACTGGAATTTGCTATCGA+TGG | + | chr1.1:40540452-40540471 | MS.gene034494:intron | 40.0% |
| !! | TTGGTCTTGATGTTTCTTCC+AGG | - | chr1.1:40543301-40543320 | None:intergenic | 40.0% |
| !! | TTGGTTTTCTTTCAGAGGGA+GGG | - | chr1.1:40542255-40542274 | None:intergenic | 40.0% |
| !!! | ATTGGTTTTCTTTCAGAGGG+AGG | - | chr1.1:40542256-40542275 | None:intergenic | 40.0% |
| !!! | TTCTTGTTTTGCAGCATTGC+TGG | + | chr1.1:40542650-40542669 | MS.gene034494:intron | 40.0% |
| AAGCAGATATGTCGCCAAAC+AGG | + | chr1.1:40543094-40543113 | MS.gene034494:CDS | 45.0% | |
| AAGTGACAACCCTCACCAAA+TGG | - | chr1.1:40542680-40542699 | None:intergenic | 45.0% | |
| ACAAATGTTGGTCGTATGCC+TGG | + | chr1.1:40542953-40542972 | MS.gene034494:CDS | 45.0% | |
| ACTGATCTTGGCAGTGGAAT+TGG | - | chr1.1:40543023-40543042 | None:intergenic | 45.0% | |
| AGTGTAGAAGCTTCTTTGGC+TGG | + | chr1.1:40543040-40543059 | MS.gene034494:CDS | 45.0% | |
| CAACATAGAGTTGGGCACTT+GGG | + | chr1.1:40542364-40542383 | MS.gene034494:intron | 45.0% | |
| CACTTCTCACATCATGTTCC+CGG | + | chr1.1:40542695-40542714 | MS.gene034494:CDS | 45.0% | |
| CAGGTGATTAGACTTGACTG+TGG | - | chr1.1:40541989-40542008 | None:intergenic | 45.0% | |
| CATTGTTAGAGACTGGTGGT+GGG | - | chr1.1:40542787-40542806 | None:intergenic | 45.0% | |
| CCAATGCTACAAAGCTGATC+AGG | - | chr1.1:40541528-40541547 | None:intergenic | 45.0% | |
| CCAATGGCACCTACAAATGT+TGG | + | chr1.1:40542941-40542960 | MS.gene034494:CDS | 45.0% | |
| CTTCGACAACAGAGTTTCAG+AGG | - | chr1.1:40540429-40540448 | None:intergenic | 45.0% | |
| CTTGATGTTTCTTCCAGGTG+CGG | - | chr1.1:40543296-40543315 | None:intergenic | 45.0% | |
| GAACCATTGTTAGAGACTGG+TGG | - | chr1.1:40542791-40542810 | None:intergenic | 45.0% | |
| GCAGAACCATTGTTAGAGAC+TGG | - | chr1.1:40542794-40542813 | None:intergenic | 45.0% | |
| GCTAAAGGATCCTGCACATT+TGG | + | chr1.1:40543337-40543356 | MS.gene034494:CDS | 45.0% | |
| GCTGGAGCTATCATTGGAAA+GGG | + | chr1.1:40543058-40543077 | MS.gene034494:CDS | 45.0% | |
| GGCATACGACCAACATTTGT+AGG | - | chr1.1:40542953-40542972 | None:intergenic | 45.0% | |
| TATGAAGCATGGACACTCCT+CGG | - | chr1.1:40540335-40540354 | None:intergenic | 45.0% | |
| TCCCATTGGAAACCTACCAT+TGG | + | chr1.1:40542107-40542126 | MS.gene034494:intron | 45.0% | |
| TCTGCTGAAGGCTGCAAATT+TGG | + | chr1.1:40542845-40542864 | MS.gene034494:CDS | 45.0% | |
| TCTGTTGTCGAAGTAGTCAC+TGG | + | chr1.1:40540436-40540455 | MS.gene034494:intron | 45.0% | |
| TCTTTGGCTGGAGCTATCAT+TGG | + | chr1.1:40543052-40543071 | MS.gene034494:CDS | 45.0% | |
| TGATGAACCCACCTTCCAAT+TGG | + | chr1.1:40541238-40541257 | MS.gene034494:intron | 45.0% | |
| TTCTACACTGATCTTGGCAG+TGG | - | chr1.1:40543029-40543048 | None:intergenic | 45.0% | |
| ! | AGGAGAGTACAACAGTTGGA+GGG | - | chr1.1:40541865-40541884 | None:intergenic | 45.0% |
| ! | AGTGAGGAGAGTACAACAGT+TGG | - | chr1.1:40541869-40541888 | None:intergenic | 45.0% |
| ! | ATTGTTAGAGACTGGTGGTG+GGG | - | chr1.1:40542786-40542805 | None:intergenic | 45.0% |
| ! | CCAACATTTGTAGGTGCCAT+TGG | - | chr1.1:40542944-40542963 | None:intergenic | 45.0% |
| ! | CCATTTTGCCCATGGTGAAT+GGG | + | chr1.1:40542877-40542896 | MS.gene034494:CDS | 45.0% |
| ! | CCTGATCAGCTTTGTAGCAT+TGG | + | chr1.1:40541525-40541544 | MS.gene034494:intron | 45.0% |
| ! | GAAATGGACTCAACTGGTGT+AGG | + | chr1.1:40540850-40540869 | MS.gene034494:intron | 45.0% |
| ! | GATGCAGTTGCGGATTAACT+TGG | + | chr1.1:40542427-40542446 | MS.gene034494:intron | 45.0% |
| ! | GCAACAGAAATGGACTCAAC+TGG | + | chr1.1:40540844-40540863 | MS.gene034494:intron | 45.0% |
| ! | TTCACATGACCCTGAGTTGA+AGG | + | chr1.1:40540693-40540712 | MS.gene034494:intron | 45.0% |
| !! | ACAGACACCATGAGTTGATC+TGG | + | chr1.1:40542069-40542088 | MS.gene034494:intron | 45.0% |
| !! | AGGGTTGATGCTGCTGTTAA+TGG | + | chr1.1:40539804-40539823 | MS.gene034494:CDS | 45.0% |
| !! | AGTTGATGATCACCGTCCAA+TGG | + | chr1.1:40542925-40542944 | MS.gene034494:CDS | 45.0% |
| !! | CATTTGTAGGTGCCATTGGA+CGG | - | chr1.1:40542940-40542959 | None:intergenic | 45.0% |
| !! | GAAAGATGTCACTTTGCCCA+TGG | + | chr1.1:40543361-40543380 | MS.gene034494:CDS | 45.0% |
| AAAGAACAGGACCAGAGCAG+TGG | - | chr1.1:40541809-40541828 | None:intergenic | 50.0% | |
| ACCGAGTTCCCATTCACCAT+GGG | - | chr1.1:40542888-40542907 | None:intergenic | 50.0% | |
| CCAACATAGAGTTGGGCACT+TGG | + | chr1.1:40542363-40542382 | MS.gene034494:intron | 50.0% | |
| CCAAGTGCCCAACTCTATGT+TGG | - | chr1.1:40542366-40542385 | None:intergenic | 50.0% | |
| CCACCACCAGTCTCTAACAA+TGG | + | chr1.1:40542785-40542804 | MS.gene034494:CDS | 50.0% | |
| CCATTGTTAGAGACTGGTGG+TGG | - | chr1.1:40542788-40542807 | None:intergenic | 50.0% | |
| CCCATTCACCATGGGCAAAA+TGG | - | chr1.1:40542880-40542899 | None:intergenic | 50.0% | |
| GCAACGGCATTATAACCACC+GGG | - | chr1.1:40542716-40542735 | None:intergenic | 50.0% | |
| GCAGGAAGACCCATGACAAT+GGG | + | chr1.1:40541101-40541120 | MS.gene034494:intron | 50.0% | |
| GCCGCTGAATTGCGAAAGAT+AGG | + | chr1.1:40543385-40543404 | MS.gene034494:CDS | 50.0% | |
| GCTTTGCTCTGATGCAGTTG+CGG | + | chr1.1:40542417-40542436 | MS.gene034494:intron | 50.0% | |
| GGACGGTGATCATCAACTGA+TGG | - | chr1.1:40542923-40542942 | None:intergenic | 50.0% | |
| GGAGCTATCATTGGAAAGGG+TGG | + | chr1.1:40543061-40543080 | MS.gene034494:CDS | 50.0% | |
| GGCAACGGCATTATAACCAC+CGG | - | chr1.1:40542717-40542736 | None:intergenic | 50.0% | |
| GGCTGGAGCTATCATTGGAA+AGG | + | chr1.1:40543057-40543076 | MS.gene034494:CDS | 50.0% | |
| GTACAACAGTTGGAGGGAAG+AGG | - | chr1.1:40541859-40541878 | None:intergenic | 50.0% | |
| TACCGAGTTCCCATTCACCA+TGG | - | chr1.1:40542889-40542908 | None:intergenic | 50.0% | |
| TGCAGGAAGACCCATGACAA+TGG | + | chr1.1:40541100-40541119 | MS.gene034494:intron | 50.0% | |
| TTCTCACATCATGTTCCCGG+TGG | + | chr1.1:40542698-40542717 | MS.gene034494:CDS | 50.0% | |
| ! | ACATTTCTAGGAGGTGCAGC+AGG | - | chr1.1:40542758-40542777 | None:intergenic | 50.0% |
| ! | AGCATTGCTGGCTGTCCATT+TGG | + | chr1.1:40542662-40542681 | MS.gene034494:intron | 50.0% |
| ! | GAGGAGAGTACAACAGTTGG+AGG | - | chr1.1:40541866-40541885 | None:intergenic | 50.0% |
| ! | GCTTCAATTGGAAGCACAGG+TGG | + | chr1.1:40540664-40540683 | MS.gene034494:intron | 50.0% |
| !! | AACCATCGCTCTGGAGCAAA+GGG | - | chr1.1:40541501-40541520 | None:intergenic | 50.0% |
| !! | ATCTGCTGTTTCCACTGCTC+TGG | + | chr1.1:40541795-40541814 | MS.gene034494:intron | 50.0% |
| !! | GAGGAGTGTCCATGCTTCAT+AGG | + | chr1.1:40540334-40540353 | MS.gene034494:intron | 50.0% |
| !! | GCCATTTTGCCCATGGTGAA+TGG | + | chr1.1:40542876-40542895 | MS.gene034494:CDS | 50.0% |
| !! | GCTGGTTTGGGCATATAGTG+AGG | - | chr1.1:40541885-40541904 | None:intergenic | 50.0% |
| !!! | GACAAGTGCCATTTTGCCCA+TGG | + | chr1.1:40542869-40542888 | MS.gene034494:CDS | 50.0% |
| ATCAACCCTCCCTCGTTTGC+GGG | - | chr1.1:40539793-40539812 | None:intergenic | 55.0% | |
| ATGTTTCTTCCAGGTGCGGC+TGG | - | chr1.1:40543292-40543311 | None:intergenic | 55.0% | |
| CATCAACCCTCCCTCGTTTG+CGG | - | chr1.1:40539794-40539813 | None:intergenic | 55.0% | |
| CTAGTACCGCCTAGACCAGA+AGG | - | chr1.1:40542992-40543011 | None:intergenic | 55.0% | |
| GCACAGATACGGACACGACA+CGG | + | chr1.1:40540208-40540227 | MS.gene034494:intron | 55.0% | |
| GCATGGACACTCCTCGGATT+AGG | - | chr1.1:40540329-40540348 | None:intergenic | 55.0% | |
| GCCCATGGTGAATGGGAACT+CGG | + | chr1.1:40542884-40542903 | MS.gene034494:CDS | 55.0% | |
| GTTGAGGCTCCTTCTGGTCT+AGG | + | chr1.1:40542980-40542999 | MS.gene034494:CDS | 55.0% | |
| TCAGGATGCAACCATCGCTC+TGG | - | chr1.1:40541510-40541529 | None:intergenic | 55.0% | |
| TCGCAATTCAGCGGCTCCAT+GGG | - | chr1.1:40543380-40543399 | None:intergenic | 55.0% | |
| TGTTTCTTCCAGGTGCGGCT+GGG | - | chr1.1:40543291-40543310 | None:intergenic | 55.0% | |
| TTCGCAATTCAGCGGCTCCA+TGG | - | chr1.1:40543381-40543400 | None:intergenic | 55.0% | |
| ! | ACCCAGGGTGGATTTAGGTG+GGG | - | chr1.1:40543251-40543270 | None:intergenic | 55.0% |
| ! | CACCCAGGGTGGATTTAGGT+GGG | - | chr1.1:40543252-40543271 | None:intergenic | 55.0% |
| ! | GCTGGCTGTCCATTTGGTGA+GGG | + | chr1.1:40542668-40542687 | MS.gene034494:CDS | 55.0% |
| ! | GGTCTAGGCGGTACTAGCTT+TGG | + | chr1.1:40542995-40543014 | MS.gene034494:CDS | 55.0% |
| ! | TCGTATGCCTGGTCGAGTTG+AGG | + | chr1.1:40542964-40542983 | MS.gene034494:CDS | 55.0% |
| ! | TGCTGGCTGTCCATTTGGTG+AGG | + | chr1.1:40542667-40542686 | MS.gene034494:CDS | 55.0% |
| !! | ACCATCGCTCTGGAGCAAAG+GGG | - | chr1.1:40541500-40541519 | None:intergenic | 55.0% |
| !! | CAACCATCGCTCTGGAGCAA+AGG | - | chr1.1:40541502-40541521 | None:intergenic | 55.0% |
| ACCTGGACACGCCTAATCCG+AGG | + | chr1.1:40540315-40540334 | MS.gene034494:intron | 60.0% | |
| CAGTTGGAGGGAAGAGGCAG+AGG | - | chr1.1:40541853-40541872 | None:intergenic | 60.0% | |
| GAAGGAGCCTCAACTCGACC+AGG | - | chr1.1:40542974-40542993 | None:intergenic | 60.0% | |
| GAGGCTCCTTCTGGTCTAGG+CGG | + | chr1.1:40542983-40543002 | MS.gene034494:CDS | 60.0% | |
| GCCCCACCTAAATCCACCCT+GGG | + | chr1.1:40543247-40543266 | MS.gene034494:CDS | 60.0% | |
| GGTGGGGCGGCAACATTTCT+AGG | - | chr1.1:40542770-40542789 | None:intergenic | 60.0% | |
| TCCCCTTTGCTCCAGAGCGA+TGG | + | chr1.1:40541496-40541515 | MS.gene034494:intron | 60.0% | |
| TGCCCCACCTAAATCCACCC+TGG | + | chr1.1:40543246-40543265 | MS.gene034494:CDS | 60.0% | |
| ! | GCACCCAGGGTGGATTTAGG+TGG | - | chr1.1:40543253-40543272 | None:intergenic | 60.0% |
| ! | GGAGCACCCAGGGTGGATTT+AGG | - | chr1.1:40543256-40543275 | None:intergenic | 60.0% |
| ! | GGGGCGGCAACATTTCTAGG+AGG | - | chr1.1:40542767-40542786 | None:intergenic | 60.0% |
| ! | TCCTCGGATTAGGCGTGTCC+AGG | - | chr1.1:40540319-40540338 | None:intergenic | 60.0% |
| !! | GGTCGAGTTGAGGCTCCTTC+TGG | + | chr1.1:40542974-40542993 | MS.gene034494:CDS | 60.0% |
| !! | GTTAGAGACTGGTGGTGGGG+CGG | - | chr1.1:40542783-40542802 | None:intergenic | 60.0% |
| !! | TGTCGGTGTCGCGTCAGTGT+CGG | + | chr1.1:40540290-40540309 | MS.gene034494:intron | 60.0% |
| GGATGCCCGCAAACGAGGGA+GGG | + | chr1.1:40539785-40539804 | MS.gene034494:CDS | 65.0% | |
| TGGATGCCCGCAAACGAGGG+AGG | + | chr1.1:40539784-40539803 | MS.gene034494:CDS | 65.0% | |
| ! | TCGCGTCAGTGTCGGACACC+TGG | + | chr1.1:40540298-40540317 | MS.gene034494:intron | 65.0% |
| !! | ACCACCAGCAGGAGCACCCA+GGG | - | chr1.1:40543266-40543285 | None:intergenic | 65.0% |
| ACCCTGGGTGCTCCTGCTGG+TGG | + | chr1.1:40543262-40543281 | MS.gene034494:CDS | 70.0% | |
| CTGGGTGCTCCTGCTGGTGG+TGG | + | chr1.1:40543265-40543284 | MS.gene034494:CDS | 70.0% | |
| TCCACCCTGGGTGCTCCTGC+TGG | + | chr1.1:40543259-40543278 | MS.gene034494:CDS | 70.0% | |
| !! | ACCAGCAGGAGCACCCAGGG+TGG | - | chr1.1:40543263-40543282 | None:intergenic | 70.0% |
| !! | CACCACCAGCAGGAGCACCC+AGG | - | chr1.1:40543267-40543286 | None:intergenic | 70.0% |
| ! | GCGGCTGGGCCACCACCAGC+AGG | - | chr1.1:40543277-40543296 | None:intergenic | 80.0% |
| !! | GGTGGTGGCCCAGCCGCACC+TGG | + | chr1.1:40543280-40543299 | MS.gene034494:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 40539783 | 40543414 | 40539783 | ID=MS.gene034494 |
| chr1.1 | mRNA | 40539783 | 40543414 | 40539783 | ID=MS.gene034494.t1;Parent=MS.gene034494 |
| chr1.1 | exon | 40539783 | 40539849 | 40539783 | ID=MS.gene034494.t1.exon1;Parent=MS.gene034494.t1 |
| chr1.1 | CDS | 40539783 | 40539849 | 40539783 | ID=cds.MS.gene034494.t1;Parent=MS.gene034494.t1 |
| chr1.1 | exon | 40540851 | 40540905 | 40540851 | ID=MS.gene034494.t1.exon2;Parent=MS.gene034494.t1 |
| chr1.1 | CDS | 40540851 | 40540905 | 40540851 | ID=cds.MS.gene034494.t1;Parent=MS.gene034494.t1 |
| chr1.1 | exon | 40542664 | 40543414 | 40542664 | ID=MS.gene034494.t1.exon3;Parent=MS.gene034494.t1 |
| chr1.1 | CDS | 40542664 | 40543414 | 40542664 | ID=cds.MS.gene034494.t1;Parent=MS.gene034494.t1 |
| Gene Sequence |
| Protein sequence |
