AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene034517

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene034517.t1 MTR_1g063160 81.006 179 34 0 1 179 1 179 1.06e-104 298
MS.gene034517.t1 MTR_1g047550 79.330 179 37 0 1 179 1 179 1.59e-102 292
MS.gene034517.t1 MTR_1g054265 85.119 168 25 0 1 168 1 168 2.66e-102 291
MS.gene034517.t1 MTR_8g079502 79.518 166 34 0 1 166 1 166 2.57e-93 269
MS.gene034517.t1 MTR_4g131030 69.681 188 40 1 1 171 1 188 5.63e-90 262
MS.gene034517.t1 MTR_8g051580 57.865 178 75 0 1 178 1 178 5.20e-70 210
MS.gene034517.t1 MTR_8g046350 52.381 168 74 2 1 168 1 162 1.74e-53 167
MS.gene034517.t1 MTR_4g094632 39.634 164 87 3 1 164 1 152 6.42e-31 110
MS.gene034517.t1 MTR_3g080940 39.053 169 86 4 1 157 8 171 3.64e-29 107
MS.gene034517.t1 MTR_3g052870 42.029 138 77 2 2 136 9 146 4.96e-29 107
MS.gene034517.t1 MTR_1g106070 44.444 117 55 2 2 112 9 121 4.31e-26 98.6
MS.gene034517.t1 MTR_1g105920 45.133 113 60 1 2 112 9 121 4.47e-26 100
MS.gene034517.t1 MTR_5g045560 33.533 167 93 3 1 152 8 171 1.16e-25 99.0
MS.gene034517.t1 MTR_1g105910 45.946 111 57 2 2 110 9 118 2.32e-25 98.2
MS.gene034517.t1 MTR_3g052920 45.045 111 58 2 2 110 9 118 5.36e-25 97.1
MS.gene034517.t1 MTR_1g012570 44.144 111 59 2 2 110 9 118 1.91e-24 95.9
MS.gene034517.t1 MTR_0121s0100 43.564 101 55 1 2 100 9 109 2.86e-24 92.4
MS.gene034517.t1 MTR_1g108510 43.564 101 55 1 2 100 9 109 4.72e-24 94.4
MS.gene034517.t1 MTR_3g030770 53.247 77 36 0 2 78 9 85 6.29e-24 94.4
MS.gene034517.t1 MTR_8g043650 44.144 111 59 2 2 110 9 118 8.13e-24 94.0
MS.gene034517.t1 MTR_2g030740 54.545 77 35 0 2 78 9 85 8.76e-24 94.0
MS.gene034517.t1 MTR_2g093190 43.243 111 60 2 2 110 9 118 2.06e-23 92.8
MS.gene034517.t1 MTR_1g077360 50.649 77 38 0 2 78 9 85 5.50e-23 92.0
MS.gene034517.t1 MTR_4g094638 37.584 149 82 3 1 143 1 144 6.42e-23 90.1
MS.gene034517.t1 MTR_1g075600 51.948 77 37 0 2 78 9 85 1.04e-22 91.3
MS.gene034517.t1 MTR_1g108580 42.574 101 56 1 2 100 9 109 1.23e-22 90.9
MS.gene034517.t1 MTR_3g030780 41.818 110 62 1 2 109 9 118 3.08e-22 87.0
MS.gene034517.t1 MTR_2g105290 36.879 141 72 3 1 138 11 137 4.27e-22 88.2
MS.gene034517.t1 MTR_0121s0080 44.068 118 61 3 2 117 9 123 5.14e-22 89.4
MS.gene034517.t1 MTR_2g085250 47.436 78 41 0 2 79 9 86 1.32e-21 88.2
MS.gene034517.t1 MTR_2g085280 47.436 78 41 0 2 79 9 86 1.37e-21 88.2
MS.gene034517.t1 MTR_5g053390 53.623 69 32 0 2 70 9 77 2.24e-21 87.8
MS.gene034517.t1 MTR_1g105905 45.361 97 51 1 18 112 8 104 1.56e-20 85.1
MS.gene034517.t1 MTR_5g055100 48.000 75 39 0 2 76 9 83 3.80e-20 84.3
MS.gene034517.t1 MTR_7g028448 38.889 126 62 3 14 139 24 134 7.71e-20 82.0
MS.gene034517.t1 MTR_4g036915 38.889 126 62 3 14 139 24 134 7.71e-20 82.0
MS.gene034517.t1 MTR_7g075870 40.385 104 59 1 1 104 1 101 1.76e-19 82.0
MS.gene034517.t1 MTR_0003s0590 42.453 106 55 1 1 100 1 106 2.04e-19 82.8
MS.gene034517.t1 MTR_8g087860 43.269 104 56 1 1 104 17 117 2.56e-19 82.4
MS.gene034517.t1 MTR_8g086290 44.186 86 46 1 2 85 12 97 2.56e-19 80.9
MS.gene034517.t1 MTR_7g075870 42.056 107 54 3 1 104 1 102 1.25e-18 79.7
MS.gene034517.t1 MTR_3g452380 42.453 106 58 1 1 106 16 118 1.26e-18 80.5
MS.gene034517.t1 MTR_7g062350 55.224 67 30 0 13 79 32 98 1.63e-18 80.1
MS.gene034517.t1 MTR_2g017865 42.308 104 57 1 1 104 16 116 3.45e-18 79.7
MS.gene034517.t1 MTR_5g066960 56.667 60 26 0 1 60 1 60 7.74e-18 73.9
MS.gene034517.t1 MTR_5g066180 39.823 113 54 4 1 105 1 107 5.37e-17 75.9
MS.gene034517.t1 MTR_2g009890 52.174 69 33 0 1 69 1 69 6.42e-17 76.6
MS.gene034517.t1 MTR_8g033270 34.014 147 81 5 1 143 1 135 9.89e-17 75.5
MS.gene034517.t1 MTR_8g033220 38.462 104 62 1 1 104 1 102 1.02e-16 75.1
MS.gene034517.t1 MTR_1g053070 47.826 69 36 0 1 69 1 69 1.12e-16 75.5
MS.gene034517.t1 MTR_3g005530 53.226 62 29 0 1 62 1 62 1.17e-16 74.7
MS.gene034517.t1 MTR_8g033220 38.462 104 62 1 1 104 1 102 1.51e-16 74.7
MS.gene034517.t1 MTR_5g032520 37.838 111 63 2 1 106 1 110 1.83e-16 74.3
MS.gene034517.t1 MTR_3g067875 52.542 59 27 1 18 75 8 66 2.24e-16 70.1
MS.gene034517.t1 MTR_4g127140 51.429 70 34 0 1 70 11 80 4.22e-16 72.8
MS.gene034517.t1 MTR_1g108500 61.404 57 20 1 18 72 113 169 8.00e-16 73.9
MS.gene034517.t1 MTR_1g101970 46.377 69 37 0 1 69 1 69 9.89e-16 71.6
MS.gene034517.t1 MTR_5g031000 40.777 103 55 2 1 103 1 97 1.31e-15 72.0
MS.gene034517.t1 MTR_5g032150 36.937 111 64 2 1 106 1 110 1.31e-15 72.0
MS.gene034517.t1 MTR_5g031000 40.777 103 55 2 1 103 1 97 1.46e-15 72.4
MS.gene034517.t1 MTR_4g102530 46.377 69 37 0 1 69 1 69 1.52e-15 71.6
MS.gene034517.t1 MTR_5g046790 36.190 105 63 2 1 104 1 102 1.74e-15 71.6
MS.gene034517.t1 MTR_2g461710 50.877 57 28 0 1 57 1 57 1.89e-15 67.8
MS.gene034517.t1 MTR_3g113030 51.667 60 29 0 1 60 1 60 2.07e-15 71.6
MS.gene034517.t1 MTR_1g038300 59.184 49 20 0 1 49 1 49 2.89e-15 71.2
MS.gene034517.t1 MTR_5g021270 48.387 62 32 0 1 62 1 62 2.97e-15 71.2
MS.gene034517.t1 MTR_5g021270 48.387 62 32 0 1 62 1 62 3.04e-15 71.2
MS.gene034517.t1 MTR_4g093970 47.692 65 34 0 1 65 27 91 4.16e-15 70.9
MS.gene034517.t1 MTR_5g046870 52.632 57 27 0 1 57 1 57 5.39e-15 67.8
MS.gene034517.t1 MTR_6g464720 34.532 139 81 4 1 134 1 134 5.54e-15 70.9
MS.gene034517.t1 MTR_7g016630 37.778 90 50 2 1 84 1 90 7.38e-15 70.5
MS.gene034517.t1 MTR_4g093030 56.140 57 25 0 1 57 1 57 7.60e-15 68.6
MS.gene034517.t1 MTR_7g016600 52.632 57 27 0 1 57 1 57 8.48e-15 70.5
MS.gene034517.t1 MTR_1g029670 40.000 65 39 0 1 65 1 65 9.64e-15 68.9
MS.gene034517.t1 MTR_4g084740 37.383 107 65 2 1 105 1 107 1.04e-14 70.9
MS.gene034517.t1 MTR_8g097090 39.362 94 39 1 1 76 1 94 1.16e-14 69.7
MS.gene034517.t1 MTR_3g067910 47.541 61 32 0 18 78 6 66 1.19e-14 67.0
MS.gene034517.t1 MTR_8g066260 59.184 49 20 0 1 49 1 49 1.38e-14 69.7
MS.gene034517.t1 MTR_3g088615 41.538 65 38 0 1 65 1 65 1.51e-14 68.6
MS.gene034517.t1 MTR_3g084980 54.386 57 26 0 1 57 1 57 1.75e-14 69.3
MS.gene034517.t1 MTR_4g109830 49.123 57 29 0 1 57 1 57 1.89e-14 68.9
MS.gene034517.t1 MTR_6g015975 52.632 57 27 0 1 57 1 57 3.33e-14 68.6
MS.gene034517.t1 MTR_5g041650 51.852 54 26 0 1 54 38 91 5.76e-14 69.3
MS.gene034517.t1 MTR_7g075850 32.168 143 90 4 1 143 1 136 7.42e-14 67.8
MS.gene034517.t1 MTR_3g102570 41.026 78 45 1 1 77 1 78 9.03e-14 68.2
MS.gene034517.t1 MTR_4g109810 50.877 57 28 0 1 57 1 57 9.07e-14 67.4
MS.gene034517.t1 MTR_3g109930 45.714 70 37 1 1 70 1 69 1.48e-13 65.5
MS.gene034517.t1 MTR_1g041615 68.182 44 14 0 15 58 19 62 1.84e-13 64.3
MS.gene034517.t1 MTR_4g036050 47.541 61 32 0 1 61 1 61 5.03e-13 64.3
MS.gene034517.t1 MTR_4g036050 47.541 61 32 0 1 61 1 61 5.11e-13 64.7
MS.gene034517.t1 MTR_4g036050 47.541 61 32 0 1 61 1 61 5.62e-13 63.9
MS.gene034517.t1 MTR_4g036050 47.541 61 32 0 1 61 1 61 5.99e-13 64.3
MS.gene034517.t1 MTR_4g108720 39.241 79 46 1 1 77 1 79 7.86e-13 65.9
MS.gene034517.t1 MTR_8g022970 43.478 69 39 0 3 71 19 87 6.24e-12 61.6
MS.gene034517.t1 MTR_3g067870 52.083 48 23 0 18 65 92 139 1.21e-11 60.1
MS.gene034517.t1 MTR_3g437790 49.057 53 26 1 19 70 30 82 9.00e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene034517.t1 AT2G34440 41.667 180 77 5 1 161 1 171 2.71e-35 122
MS.gene034517.t1 AT3G66656 74.242 66 17 0 1 66 1 66 2.61e-31 112
MS.gene034517.t1 AT2G24840 40.800 125 66 2 1 121 62 182 5.26e-28 105
MS.gene034517.t1 AT5G60440 40.127 157 75 3 2 154 7 148 1.16e-26 102
MS.gene034517.t1 AT1G01530 41.007 139 78 2 1 139 6 140 3.15e-24 95.5
MS.gene034517.t1 AT1G65360 37.168 113 71 0 1 113 6 118 6.59e-21 86.3
MS.gene034517.t1 AT3G57230 33.544 158 92 5 1 158 1 145 2.11e-20 82.8
MS.gene034517.t1 AT3G57230 33.136 169 100 5 1 169 1 156 1.24e-19 83.2
MS.gene034517.t1 AT3G57230 33.136 169 100 5 1 169 1 156 1.24e-19 83.2
MS.gene034517.t1 AT1G47760 42.000 100 46 2 1 100 1 88 1.29e-19 82.0
MS.gene034517.t1 AT5G13790 43.564 101 45 2 1 100 1 90 1.70e-19 83.2
MS.gene034517.t1 AT4G36590 36.496 137 57 3 2 120 7 131 3.95e-19 82.0
MS.gene034517.t1 AT5G13790 50.725 69 34 0 1 69 1 69 1.22e-18 80.9
MS.gene034517.t1 AT2G22630 36.691 139 59 4 1 139 1 110 1.30e-18 80.1
MS.gene034517.t1 AT2G22630 36.691 139 59 4 1 139 1 110 1.30e-18 80.1
MS.gene034517.t1 AT1G72350 38.519 135 69 4 2 129 43 170 1.35e-18 80.1
MS.gene034517.t1 AT2G45660 38.889 108 63 2 1 108 1 105 1.38e-18 78.6
MS.gene034517.t1 AT3G61120 54.839 62 28 0 1 62 1 62 2.06e-18 80.1
MS.gene034517.t1 AT2G45660 38.889 108 63 2 1 108 1 105 6.62e-18 78.2
MS.gene034517.t1 AT4G37940 52.174 69 33 0 1 69 1 69 8.28e-18 78.2
MS.gene034517.t1 AT4G22950 39.815 108 61 1 1 108 1 104 9.77e-18 76.6
MS.gene034517.t1 AT4G37940 43.269 104 54 2 1 100 1 103 1.07e-17 76.6
MS.gene034517.t1 AT4G37940 52.174 69 33 0 1 69 1 69 1.13e-17 77.4
MS.gene034517.t1 AT4G09960 40.952 105 59 1 1 105 2 103 1.43e-17 77.4
MS.gene034517.t1 AT4G09960 40.952 105 59 1 1 105 1 102 1.46e-17 77.0
MS.gene034517.t1 AT4G09960 40.952 105 59 1 1 105 1 102 1.47e-17 77.4
MS.gene034517.t1 AT3G58780 40.566 106 60 1 1 106 16 118 1.75e-17 77.4
MS.gene034517.t1 AT3G57390 49.275 69 35 0 1 69 1 69 1.95e-17 77.0
MS.gene034517.t1 AT3G58780 40.566 106 60 1 1 106 22 124 2.04e-17 77.4
MS.gene034517.t1 AT4G09960 40.952 105 59 1 1 105 11 112 2.35e-17 77.0
MS.gene034517.t1 AT3G58780 40.566 106 60 1 1 106 16 118 2.51e-17 77.8
MS.gene034517.t1 AT4G09960 40.952 105 59 1 1 105 27 128 2.74e-17 77.0
MS.gene034517.t1 AT4G09960 40.952 105 59 1 1 105 96 197 2.82e-17 78.2
MS.gene034517.t1 AT3G04100 47.692 65 34 0 2 66 14 78 2.86e-17 76.3
MS.gene034517.t1 AT3G57390 49.275 69 35 0 1 69 1 69 3.40e-17 77.0
MS.gene034517.t1 AT2G42830 39.623 106 61 1 1 106 16 118 3.62e-17 76.6
MS.gene034517.t1 AT2G42830 39.623 106 61 1 1 106 16 118 3.77e-17 76.6
MS.gene034517.t1 AT2G22540 39.316 117 55 2 1 117 1 101 6.76e-17 75.9
MS.gene034517.t1 AT2G22540 39.316 117 55 2 1 117 1 101 6.76e-17 75.9
MS.gene034517.t1 AT5G51860 37.500 104 63 1 1 104 1 102 7.01e-17 75.1
MS.gene034517.t1 AT5G51860 37.500 104 63 1 1 104 1 102 7.05e-17 75.1
MS.gene034517.t1 AT2G14210 58.621 58 24 0 1 58 1 58 7.74e-17 75.5
MS.gene034517.t1 AT4G22950 39.815 108 61 1 1 108 1 104 8.65e-17 75.1
MS.gene034517.t1 AT4G22950 39.815 108 61 1 1 108 1 104 8.65e-17 75.1
MS.gene034517.t1 AT2G14210 58.621 58 24 0 1 58 1 58 8.72e-17 75.5
MS.gene034517.t1 AT2G45650 47.826 69 36 0 1 69 1 69 8.91e-17 75.9
MS.gene034517.t1 AT1G29962 46.377 69 37 0 2 70 8 76 1.60e-16 73.9
MS.gene034517.t1 AT1G28460 46.377 69 37 0 2 70 8 76 1.84e-16 73.6
MS.gene034517.t1 AT3G54340 30.435 184 104 5 1 166 1 178 3.07e-16 73.9
MS.gene034517.t1 AT5G65070 45.205 73 38 1 1 71 1 73 3.44e-16 72.0
MS.gene034517.t1 AT3G58780 39.623 106 54 1 1 106 16 111 3.80e-16 73.9
MS.gene034517.t1 AT4G24540 35.455 110 65 2 1 105 1 109 4.05e-16 73.6
MS.gene034517.t1 AT1G77980 46.154 78 41 1 1 77 1 78 4.20e-16 74.7
MS.gene034517.t1 AT4G11880 56.140 57 25 0 1 57 1 57 4.42e-16 72.4
MS.gene034517.t1 AT4G11880 56.140 57 25 0 1 57 1 57 4.42e-16 72.4
MS.gene034517.t1 AT1G22130 29.609 179 85 4 1 143 1 174 4.42e-16 74.7
MS.gene034517.t1 AT5G10140 54.386 57 26 0 1 57 1 57 4.50e-16 72.0
MS.gene034517.t1 AT5G20240 46.970 66 35 0 1 66 1 66 6.74e-16 71.2
MS.gene034517.t1 AT5G10140 54.386 57 26 0 1 57 1 57 6.76e-16 72.0
MS.gene034517.t1 AT5G65070 45.205 73 38 1 1 71 1 73 7.13e-16 72.4
MS.gene034517.t1 AT5G10140 54.386 57 26 0 1 57 1 57 8.61e-16 72.0
MS.gene034517.t1 AT5G10140 54.386 57 26 0 1 57 1 57 8.91e-16 72.0
MS.gene034517.t1 AT5G62165 31.731 104 68 1 1 104 1 101 1.10e-15 70.9
MS.gene034517.t1 AT5G62165 31.731 104 68 1 1 104 1 101 1.10e-15 70.9
MS.gene034517.t1 AT5G62165 31.731 104 68 1 1 104 1 101 1.10e-15 70.9
MS.gene034517.t1 AT4G11880 55.172 58 26 0 1 58 1 58 1.16e-15 72.4
MS.gene034517.t1 AT4G11880 55.172 58 26 0 1 58 1 58 1.16e-15 72.4
MS.gene034517.t1 AT5G20240 46.970 66 35 0 1 66 1 66 1.33e-15 71.6
MS.gene034517.t1 AT5G62165 31.731 104 68 1 1 104 1 101 1.71e-15 70.5
MS.gene034517.t1 AT5G62165 31.731 104 68 1 1 104 1 101 1.71e-15 70.5
MS.gene034517.t1 AT5G62165 31.731 104 68 1 1 104 1 101 1.71e-15 70.5
MS.gene034517.t1 AT5G62165 31.731 104 68 1 1 104 1 101 1.71e-15 70.5
MS.gene034517.t1 AT5G62165 31.731 104 68 1 1 104 1 101 1.71e-15 70.5
MS.gene034517.t1 AT3G30260 54.386 57 26 0 1 57 1 57 1.79e-15 72.0
MS.gene034517.t1 AT5G65070 49.231 65 31 1 1 63 1 65 1.79e-15 72.0
MS.gene034517.t1 AT5G65070 51.724 58 28 0 1 58 1 58 2.17e-15 71.6
MS.gene034517.t1 AT1G46408 40.164 122 61 5 1 110 1 122 3.01e-15 71.6
MS.gene034517.t1 AT5G65070 51.724 58 28 0 1 58 1 58 3.40e-15 70.9
MS.gene034517.t1 AT3G58780 54.237 59 27 0 1 59 16 74 3.90e-15 71.6
MS.gene034517.t1 AT5G51870 54.386 57 26 0 1 57 1 57 4.52e-15 69.7
MS.gene034517.t1 AT2G22540 60.000 50 20 0 1 50 1 50 5.12e-15 70.9
MS.gene034517.t1 AT5G62165 31.731 104 68 1 1 104 1 101 5.37e-15 70.1
MS.gene034517.t1 AT5G62165 31.731 104 68 1 1 104 1 101 5.37e-15 70.1
MS.gene034517.t1 AT5G62165 31.731 104 68 1 1 104 1 101 5.37e-15 70.1
MS.gene034517.t1 AT1G77950 43.590 78 43 1 1 77 1 78 5.37e-15 70.9
MS.gene034517.t1 AT1G77950 43.590 78 43 1 1 77 1 78 5.37e-15 70.9
MS.gene034517.t1 AT1G77950 43.590 78 43 1 1 77 1 78 5.37e-15 70.9
MS.gene034517.t1 AT1G77950 43.590 78 43 1 1 77 1 78 5.37e-15 70.9
MS.gene034517.t1 AT5G62165 31.731 104 68 1 1 104 1 101 5.50e-15 70.1
MS.gene034517.t1 AT5G62165 31.731 104 68 1 1 104 1 101 5.50e-15 70.1
MS.gene034517.t1 AT4G18960 54.098 61 28 0 2 62 18 78 5.65e-15 70.9
MS.gene034517.t1 AT5G51870 54.386 57 26 0 1 57 1 57 5.79e-15 70.1
MS.gene034517.t1 AT1G69120 61.224 49 19 0 1 49 1 49 6.26e-15 70.5
MS.gene034517.t1 AT5G51870 53.448 58 27 0 1 58 24 81 7.39e-15 69.7
MS.gene034517.t1 AT2G03710 52.632 57 27 0 1 57 1 57 7.89e-15 69.3
MS.gene034517.t1 AT1G69540 44.872 78 42 1 1 77 1 78 1.01e-14 71.2
MS.gene034517.t1 AT1G18750 41.772 79 44 1 1 77 1 79 1.01e-14 71.2
MS.gene034517.t1 AT5G51870 54.386 57 26 0 1 57 1 57 1.03e-14 69.7
MS.gene034517.t1 AT1G18750 41.772 79 44 1 1 77 1 79 1.04e-14 71.2
MS.gene034517.t1 AT1G18750 41.772 79 44 1 1 77 1 79 1.08e-14 71.2
MS.gene034517.t1 AT1G69540 44.872 78 42 1 1 77 1 78 1.18e-14 70.9
MS.gene034517.t1 AT1G69120 61.224 49 19 0 1 49 1 49 1.21e-14 70.1
MS.gene034517.t1 AT5G60910 50.877 57 28 0 1 57 1 57 1.24e-14 69.7
MS.gene034517.t1 AT5G51870 54.386 57 26 0 1 57 11 67 1.30e-14 69.7
MS.gene034517.t1 AT1G71692 60.000 50 20 0 1 50 1 50 1.33e-14 69.3
MS.gene034517.t1 AT1G26310 59.184 49 20 0 1 49 1 49 1.49e-14 69.7
MS.gene034517.t1 AT5G15800 52.632 57 27 0 1 57 1 57 1.91e-14 69.3
MS.gene034517.t1 AT5G23260 61.224 49 19 0 1 49 1 49 2.08e-14 69.3
MS.gene034517.t1 AT3G02310 52.632 57 27 0 1 57 1 57 2.16e-14 68.6
MS.gene034517.t1 AT5G23260 61.224 49 19 0 1 49 1 49 2.35e-14 69.3
MS.gene034517.t1 AT5G23260 61.224 49 19 0 1 49 17 65 2.48e-14 69.3
MS.gene034517.t1 AT5G23260 61.224 49 19 0 1 49 17 65 2.63e-14 69.3
MS.gene034517.t1 AT5G15800 52.632 57 27 0 1 57 1 57 2.82e-14 68.9
MS.gene034517.t1 AT1G24260 52.632 57 27 0 1 57 1 57 3.28e-14 68.9
MS.gene034517.t1 AT1G17310 52.055 73 33 1 2 74 48 118 3.32e-14 68.2
MS.gene034517.t1 AT1G24260 52.632 57 27 0 1 57 1 57 3.38e-14 68.6
MS.gene034517.t1 AT1G24260 52.632 57 27 0 1 57 1 57 3.57e-14 68.6
MS.gene034517.t1 AT2G03710 52.632 57 27 0 1 57 1 57 3.70e-14 68.6
MS.gene034517.t1 AT2G03710 52.632 57 27 0 1 57 1 57 3.81e-14 68.6
MS.gene034517.t1 AT1G17310 52.055 73 33 1 2 74 59 129 4.13e-14 68.2
MS.gene034517.t1 AT5G65060 52.727 55 26 0 1 55 1 55 4.57e-14 67.4
MS.gene034517.t1 AT3G02310 52.632 57 27 0 1 57 1 57 4.63e-14 68.6
MS.gene034517.t1 AT5G65050 50.909 55 27 0 1 55 1 55 4.80e-14 67.0
MS.gene034517.t1 AT5G62165 48.276 58 30 0 1 58 1 58 5.29e-14 65.1
MS.gene034517.t1 AT5G65060 52.727 55 26 0 1 55 1 55 6.70e-14 67.0
MS.gene034517.t1 AT5G65080 50.909 55 27 0 1 55 8 62 8.24e-14 66.6
MS.gene034517.t1 AT5G65060 52.727 55 26 0 1 55 1 55 8.34e-14 66.6
MS.gene034517.t1 AT5G65080 50.909 55 27 0 1 55 8 62 1.01e-13 66.6
MS.gene034517.t1 AT5G65050 50.909 55 27 0 1 55 1 55 1.34e-13 66.2
MS.gene034517.t1 AT5G65050 50.909 55 27 0 1 55 1 55 1.36e-13 65.9
MS.gene034517.t1 AT5G65050 50.909 55 27 0 1 55 1 55 1.41e-13 65.9
MS.gene034517.t1 AT2G03060 43.038 79 43 2 1 77 1 79 4.43e-13 66.6
MS.gene034517.t1 AT2G03060 43.038 79 43 2 1 77 1 79 4.43e-13 66.6
MS.gene034517.t1 AT2G03060 43.038 79 43 2 1 77 1 79 4.43e-13 66.6
MS.gene034517.t1 AT2G03060 43.038 79 43 2 1 77 1 79 4.48e-13 66.6
MS.gene034517.t1 AT4G37435 47.368 57 30 0 1 57 1 57 8.28e-13 63.9
MS.gene034517.t1 AT1G28450 40.580 69 41 0 2 70 8 76 1.19e-12 63.5
MS.gene034517.t1 AT2G26320 43.103 58 33 0 1 58 17 74 2.77e-12 60.8
MS.gene034517.t1 AT1G60920 42.308 78 38 3 1 71 1 78 2.10e-11 60.1
MS.gene034517.t1 AT1G77080 66.667 39 13 0 1 39 1 39 2.59e-11 59.7
MS.gene034517.t1 AT1G77080 66.667 39 13 0 1 39 1 39 2.60e-11 59.7
MS.gene034517.t1 AT1G77080 66.667 39 13 0 1 39 1 39 2.91e-11 58.9
MS.gene034517.t1 AT1G77080 66.667 39 13 0 1 39 1 39 4.86e-11 59.3
MS.gene034517.t1 AT1G77080 66.667 39 13 0 1 39 1 39 5.69e-11 58.9
MS.gene034517.t1 AT1G77080 66.667 39 13 0 1 39 1 39 9.74e-11 58.9

Find 31 sgRNAs with CRISPR-Local

Find 37 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTCTGATTCTTCCAATA+TGG 0.230078 1.3:-38361012 MS.gene034517:CDS
GGTGACAATCCTTACTCTTT+TGG 0.280846 1.3:-38361110 MS.gene034517:CDS
TACGTTTAGGCTTTAGTTCA+AGG 0.340076 1.3:+38361054 None:intergenic
CCTTCAGAGTTCCTACGTTT+AGG 0.407154 1.3:+38361041 None:intergenic
ATGTATGATGCTTCTAGCTC+AGG 0.444160 1.3:-38360799 MS.gene034517:CDS
AGGCTTTAGTTCAAGGTGCT+TGG 0.460931 1.3:+38361061 None:intergenic
GCAGCAACAACATCAACTCC+TGG 0.473203 1.3:+38361083 None:intergenic
GCTATTGTTGTGTTCTCTCC+AGG 0.475407 1.3:-38361131 MS.gene034517:CDS
GAATGTGACCTGCCTCGTAT+TGG 0.523256 1.3:+38361220 None:intergenic
CCTGGGTGACCAAAAGAGTA+AGG 0.526567 1.3:+38361101 None:intergenic
ACATTCTCAAAGCGTCGGAC+GGG 0.532546 1.3:-38361203 MS.gene034517:CDS
CACATTCTCAAAGCGTCGGA+CGG 0.538823 1.3:-38361204 MS.gene034517:CDS
TCAAGAACTTGCTGAGCTGT+TGG 0.539928 1.3:-38360979 MS.gene034517:CDS
GAAAGACTCCAATACGAGGC+AGG 0.552162 1.3:-38361228 MS.gene034517:CDS
CAGAATCTCATCATGAGTCT+CGG 0.564344 1.3:+38360929 None:intergenic
GTCGCAAAATTAAAATTGAG+AGG 0.581118 1.3:-38361253 MS.gene034517:CDS
CCTAAACGTAGGAACTCTGA+AGG 0.584431 1.3:-38361041 MS.gene034517:CDS
GCTTCTAGCTCAGGATCCAG+TGG 0.592947 1.3:-38360790 MS.gene034517:CDS
ATATTGGAAGAATCAGAAGA+GGG 0.595456 1.3:+38361014 None:intergenic
TCTAGCTCAGGATCCAGTGG+TGG 0.596669 1.3:-38360787 MS.gene034517:CDS
CAGCAACAACATCAACTCCT+GGG 0.611229 1.3:+38361084 None:intergenic
TCGCAAAATTAAAATTGAGA+GGG 0.620927 1.3:-38361252 MS.gene034517:CDS
CATATTGGAAGAATCAGAAG+AGG 0.623619 1.3:+38361013 None:intergenic
CTAGCTCAGGATCCAGTGGT+GGG 0.626580 1.3:-38360786 MS.gene034517:CDS
AGGTCACATTCTCAAAGCGT+CGG 0.637904 1.3:-38361208 MS.gene034517:CDS
CTGTTGGCACAAATCCGAGA+AGG 0.647867 1.3:-38360963 MS.gene034517:CDS
GATTCTGAAGCAAAATGATG+TGG 0.656395 1.3:-38360913 MS.gene034517:CDS
AAAGAGTAAGGATTGTCACC+TGG 0.657655 1.3:+38361113 None:intergenic
TATTGGAAGAATCAGAAGAG+GGG 0.697047 1.3:+38361015 None:intergenic
TTGAACTAAAGCCTAAACGT+AGG 0.707212 1.3:-38361052 MS.gene034517:CDS
GGGTGAAAGACTCCAATACG+AGG 0.716617 1.3:-38361232 MS.gene034517:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGATTCAATTTTTCCATAT+TGG + chr1.3:38361008-38361027 None:intergenic 20.0%
! TCGCAAAATTAAAATTGAGA+GGG - chr1.3:38360751-38360770 MS.gene034517:CDS 25.0%
ATATTGGAAGAATCAGAAGA+GGG + chr1.3:38360992-38361011 None:intergenic 30.0%
GTCGCAAAATTAAAATTGAG+AGG - chr1.3:38360750-38360769 MS.gene034517:CDS 30.0%
!!! AATGAATTGTCGATTTTGTG+CGG - chr1.3:38360839-38360858 MS.gene034517:CDS 30.0%
CATATTGGAAGAATCAGAAG+AGG + chr1.3:38360993-38361012 None:intergenic 35.0%
CTCTTCTGATTCTTCCAATA+TGG - chr1.3:38360991-38361010 MS.gene034517:CDS 35.0%
TATTGGAAGAATCAGAAGAG+GGG + chr1.3:38360991-38361010 None:intergenic 35.0%
TTGAACTAAAGCCTAAACGT+AGG - chr1.3:38360951-38360970 MS.gene034517:CDS 35.0%
! TACGTTTAGGCTTTAGTTCA+AGG + chr1.3:38360952-38360971 None:intergenic 35.0%
!! GATTCTGAAGCAAAATGATG+TGG - chr1.3:38361090-38361109 MS.gene034517:CDS 35.0%
AAAGAGTAAGGATTGTCACC+TGG + chr1.3:38360893-38360912 None:intergenic 40.0%
CAGAATCTCATCATGAGTCT+CGG + chr1.3:38361077-38361096 None:intergenic 40.0%
! GGTGACAATCCTTACTCTTT+TGG - chr1.3:38360893-38360912 MS.gene034517:CDS 40.0%
!! ATGTATGATGCTTCTAGCTC+AGG - chr1.3:38361204-38361223 MS.gene034517:CDS 40.0%
AGGTCACATTCTCAAAGCGT+CGG - chr1.3:38360795-38360814 MS.gene034517:CDS 45.0%
CAGCAACAACATCAACTCCT+GGG + chr1.3:38360922-38360941 None:intergenic 45.0%
CCTAAACGTAGGAACTCTGA+AGG - chr1.3:38360962-38360981 MS.gene034517:CDS 45.0%
CCTTCAGAGTTCCTACGTTT+AGG + chr1.3:38360965-38360984 None:intergenic 45.0%
GCTATTGTTGTGTTCTCTCC+AGG - chr1.3:38360872-38360891 MS.gene034517:CDS 45.0%
! AGGCTTTAGTTCAAGGTGCT+TGG + chr1.3:38360945-38360964 None:intergenic 45.0%
! CGGCTTTCTTTTCACCTTCT+CGG + chr1.3:38361057-38361076 None:intergenic 45.0%
!! TCAAGAACTTGCTGAGCTGT+TGG - chr1.3:38361024-38361043 MS.gene034517:CDS 45.0%
CCTGGGTGACCAAAAGAGTA+AGG + chr1.3:38360905-38360924 None:intergenic 50.0%
CTGTTGGCACAAATCCGAGA+AGG - chr1.3:38361040-38361059 MS.gene034517:CDS 50.0%
GAAAGACTCCAATACGAGGC+AGG - chr1.3:38360775-38360794 MS.gene034517:CDS 50.0%
GAATGTGACCTGCCTCGTAT+TGG + chr1.3:38360786-38360805 None:intergenic 50.0%
GCAGCAACAACATCAACTCC+TGG + chr1.3:38360923-38360942 None:intergenic 50.0%
GGGTGAAAGACTCCAATACG+AGG - chr1.3:38360771-38360790 MS.gene034517:CDS 50.0%
! CCTTACTCTTTTGGTCACCC+AGG - chr1.3:38360902-38360921 MS.gene034517:CDS 50.0%
! GATTTTGTGCGGAGCAGAAG+TGG - chr1.3:38360850-38360869 MS.gene034517:CDS 50.0%
!! ACATTCTCAAAGCGTCGGAC+GGG - chr1.3:38360800-38360819 MS.gene034517:CDS 50.0%
!! CACATTCTCAAAGCGTCGGA+CGG - chr1.3:38360799-38360818 MS.gene034517:CDS 50.0%
!! TTCGCTTTTCTTCCCACCAC+TGG + chr1.3:38361232-38361251 None:intergenic 50.0%
CTAGCTCAGGATCCAGTGGT+GGG - chr1.3:38361217-38361236 MS.gene034517:CDS 55.0%
! TCTAGCTCAGGATCCAGTGG+TGG - chr1.3:38361216-38361235 MS.gene034517:CDS 55.0%
!! GCTTCTAGCTCAGGATCCAG+TGG - chr1.3:38361213-38361232 MS.gene034517:CDS 55.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 38360743 38361282 38360743 ID=MS.gene034517
chr1.3 mRNA 38360743 38361282 38360743 ID=MS.gene034517.t1;Parent=MS.gene034517
chr1.3 exon 38360743 38361282 38360743 ID=MS.gene034517.t1.exon1;Parent=MS.gene034517.t1
chr1.3 CDS 38360743 38361282 38360743 ID=cds.MS.gene034517.t1;Parent=MS.gene034517.t1
Gene Sequence

>MS.gene034517

ATGGGTCGTCGCAAAATTAAAATTGAGAGGGTGAAAGACTCCAATACGAGGCAGGTCACATTCTCAAAGCGTCGGACGGGCTTATTCAAGAAAGCAAATGAATTGTCGATTTTGTGCGGAGCAGAAGTGGCTATTGTTGTGTTCTCTCCAGGTGACAATCCTTACTCTTTTGGTCACCCAGGAGTTGATGTTGTTGCTGCCAAGCACCTTGAACTAAAGCCTAAACGTAGGAACTCTGAAGGAAACCCCTCTTCTGATTCTTCCAATATGGAAAAATTGAATCAAGAACTTGCTGAGCTGTTGGCACAAATCCGAGAAGGTGAAAAGAAAGCCGAGACTCATGATGAGATTCTGAAGCAAAATGATGTGGCAAAACTCTCAGAGCTTAAAGAATTGAGAGATTCGTACAAAGATCTTCAAGATTGCATAAAATTGCGTCTTAGTGATATTGAGATATCAGAATGTATGATGCTTCTAGCTCAGGATCCAGTGGTGGGAAGAAAAGCGAAAACGTCAAAAAAGAAAAGAAGAAAAAATTGA
Protein sequence

>MS.gene034517.t1

MGRRKIKIERVKDSNTRQVTFSKRRTGLFKKANELSILCGAEVAIVVFSPGDNPYSFGHPGVDVVAAKHLELKPKRRNSEGNPSSDSSNMEKLNQELAELLAQIREGEKKAETHDEILKQNDVAKLSELKELRDSYKDLQDCIKLRLSDIEISECMMLLAQDPVVGRKAKTSKKKRRKN