AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene034522

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene034522.t1 MTR_1g054265 93.491 169 11 0 1 169 1 169 6.84e-113 318
MS.gene034522.t1 MTR_1g063160 79.167 168 35 0 1 168 1 168 3.05e-96 276
MS.gene034522.t1 MTR_1g047550 77.976 168 37 0 1 168 1 168 2.32e-93 269
MS.gene034522.t1 MTR_8g079502 77.246 167 38 0 1 167 1 167 3.29e-90 261
MS.gene034522.t1 MTR_4g131030 69.892 186 39 2 1 169 1 186 4.48e-88 257
MS.gene034522.t1 MTR_8g051580 58.929 168 69 0 1 168 1 168 1.40e-67 204
MS.gene034522.t1 MTR_8g046350 52.381 168 74 3 1 168 1 162 4.65e-55 171
MS.gene034522.t1 MTR_4g094632 39.634 164 87 2 1 164 1 152 1.54e-28 103
MS.gene034522.t1 MTR_3g080940 41.481 135 67 2 1 128 8 137 2.17e-27 102
MS.gene034522.t1 MTR_3g052870 40.580 138 79 2 2 136 9 146 1.80e-26 100
MS.gene034522.t1 MTR_1g106070 47.525 101 51 1 2 100 9 109 1.97e-26 99.0
MS.gene034522.t1 MTR_1g105920 47.525 101 51 1 2 100 9 109 1.61e-25 98.2
MS.gene034522.t1 MTR_1g012570 40.625 128 73 3 2 127 9 135 1.24e-24 95.9
MS.gene034522.t1 MTR_3g052920 59.420 69 28 0 2 70 9 77 1.63e-24 95.5
MS.gene034522.t1 MTR_1g105910 46.535 101 52 1 2 100 9 109 2.12e-24 95.1
MS.gene034522.t1 MTR_1g108510 43.564 101 55 1 2 100 9 109 8.05e-24 93.6
MS.gene034522.t1 MTR_5g045560 55.556 72 32 0 1 72 8 79 9.45e-24 93.6
MS.gene034522.t1 MTR_4g094638 47.525 101 48 2 1 97 1 100 1.01e-23 92.0
MS.gene034522.t1 MTR_3g030770 43.564 101 55 1 2 100 9 109 1.69e-23 92.8
MS.gene034522.t1 MTR_0121s0100 43.564 101 55 1 2 100 9 109 2.11e-23 89.7
MS.gene034522.t1 MTR_2g030740 59.420 69 28 0 2 70 9 77 3.26e-23 92.0
MS.gene034522.t1 MTR_2g093190 44.554 101 54 1 2 100 9 109 3.99e-23 91.7
MS.gene034522.t1 MTR_8g043650 44.554 101 54 1 2 100 9 109 7.67e-23 91.3
MS.gene034522.t1 MTR_1g077360 43.564 101 55 1 2 100 9 109 8.62e-23 90.9
MS.gene034522.t1 MTR_5g053390 50.000 80 40 0 2 81 9 88 3.94e-22 89.4
MS.gene034522.t1 MTR_1g108580 41.584 101 57 1 2 100 9 109 4.40e-22 89.0
MS.gene034522.t1 MTR_3g030780 40.909 110 63 1 2 109 9 118 6.90e-22 85.9
MS.gene034522.t1 MTR_2g105290 53.521 71 33 0 1 71 11 81 1.32e-21 86.7
MS.gene034522.t1 MTR_0121s0080 41.525 118 64 2 2 117 9 123 2.22e-21 87.4
MS.gene034522.t1 MTR_1g075600 55.072 69 31 0 2 70 9 77 2.54e-21 87.0
MS.gene034522.t1 MTR_8g086290 43.243 111 56 3 2 110 12 117 3.88e-21 85.1
MS.gene034522.t1 MTR_2g085250 52.113 71 34 0 2 72 9 79 7.05e-21 85.9
MS.gene034522.t1 MTR_2g085280 52.113 71 34 0 2 72 9 79 7.20e-21 85.9
MS.gene034522.t1 MTR_5g055100 50.725 69 34 0 2 70 9 77 1.15e-19 82.8
MS.gene034522.t1 MTR_0003s0590 50.704 71 35 0 1 71 1 71 3.18e-19 82.0
MS.gene034522.t1 MTR_1g105905 47.059 85 43 1 18 100 8 92 2.85e-18 79.0
MS.gene034522.t1 MTR_7g028448 56.140 57 25 0 14 70 24 80 2.98e-18 77.4
MS.gene034522.t1 MTR_4g036915 56.140 57 25 0 14 70 24 80 2.98e-18 77.4
MS.gene034522.t1 MTR_7g062350 62.069 58 22 0 13 70 32 89 8.68e-18 78.2
MS.gene034522.t1 MTR_2g009890 40.909 110 64 1 1 110 1 109 1.08e-17 78.2
MS.gene034522.t1 MTR_5g066960 55.000 60 27 0 1 60 1 60 1.62e-17 72.8
MS.gene034522.t1 MTR_3g452380 41.346 104 57 1 1 100 16 119 2.28e-17 77.0
MS.gene034522.t1 MTR_5g066180 47.826 69 36 0 1 69 1 69 2.88e-17 76.3
MS.gene034522.t1 MTR_1g053070 49.275 69 35 0 1 69 1 69 7.20e-17 75.5
MS.gene034522.t1 MTR_3g005530 49.296 71 36 0 1 71 1 71 8.58e-17 75.1
MS.gene034522.t1 MTR_8g033220 41.667 96 54 1 1 96 1 94 1.39e-16 74.3
MS.gene034522.t1 MTR_8g033270 49.275 69 35 0 1 69 1 69 1.45e-16 74.7
MS.gene034522.t1 MTR_2g017865 50.704 71 35 0 1 71 16 86 1.70e-16 74.7
MS.gene034522.t1 MTR_8g033220 41.667 96 54 1 1 96 1 94 1.77e-16 74.3
MS.gene034522.t1 MTR_4g127140 52.113 71 34 0 1 71 11 81 3.32e-16 72.8
MS.gene034522.t1 MTR_7g075870 35.714 112 55 2 1 105 1 102 4.38e-16 72.8
MS.gene034522.t1 MTR_4g102530 47.826 69 36 0 1 69 1 69 5.66e-16 72.4
MS.gene034522.t1 MTR_8g087860 49.296 71 36 0 1 71 17 87 7.50e-16 72.8
MS.gene034522.t1 MTR_1g101970 47.826 69 36 0 1 69 1 69 8.13e-16 71.6
MS.gene034522.t1 MTR_7g075870 55.172 58 26 0 1 58 1 58 9.53e-16 72.0
MS.gene034522.t1 MTR_5g031000 47.826 69 36 0 1 69 1 69 9.93e-16 72.4
MS.gene034522.t1 MTR_5g031000 47.826 69 36 0 1 69 1 69 1.15e-15 72.0
MS.gene034522.t1 MTR_4g093970 47.692 65 34 0 1 65 27 91 2.02e-15 71.6
MS.gene034522.t1 MTR_5g021270 50.000 62 31 0 1 62 1 62 2.05e-15 71.2
MS.gene034522.t1 MTR_5g021270 48.438 64 33 0 1 64 1 64 2.12e-15 71.2
MS.gene034522.t1 MTR_3g067875 60.417 48 19 0 18 65 8 55 2.38e-15 67.4
MS.gene034522.t1 MTR_1g108500 56.667 60 24 1 18 75 113 172 2.86e-15 72.0
MS.gene034522.t1 MTR_2g461710 50.877 57 28 0 1 57 1 57 3.69e-15 66.6
MS.gene034522.t1 MTR_4g109830 38.889 90 52 2 1 89 1 88 4.06e-15 70.5
MS.gene034522.t1 MTR_1g038300 38.889 90 53 1 1 88 1 90 4.14e-15 70.5
MS.gene034522.t1 MTR_3g113030 48.438 64 33 0 1 64 1 64 4.58e-15 70.5
MS.gene034522.t1 MTR_5g046790 50.000 58 29 0 1 58 1 58 5.68e-15 69.7
MS.gene034522.t1 MTR_5g046870 52.632 57 27 0 1 57 1 57 6.66e-15 67.4
MS.gene034522.t1 MTR_5g032150 52.632 57 27 0 1 57 1 57 9.21e-15 69.7
MS.gene034522.t1 MTR_1g029670 37.975 79 47 1 1 77 1 79 1.08e-14 68.6
MS.gene034522.t1 MTR_5g032520 52.632 57 27 0 1 57 1 57 1.09e-14 69.3
MS.gene034522.t1 MTR_7g016630 31.579 114 72 2 1 113 1 109 1.28e-14 69.7
MS.gene034522.t1 MTR_4g093030 53.448 58 27 0 1 58 1 58 1.95e-14 67.4
MS.gene034522.t1 MTR_3g088615 41.538 65 38 0 1 65 1 65 2.88e-14 67.4
MS.gene034522.t1 MTR_4g084740 41.463 82 47 1 1 81 1 82 3.02e-14 69.3
MS.gene034522.t1 MTR_7g016600 52.632 57 27 0 1 57 1 57 3.16e-14 68.6
MS.gene034522.t1 MTR_8g066260 50.000 58 29 0 1 58 1 58 3.31e-14 68.2
MS.gene034522.t1 MTR_7g075850 37.755 98 56 2 1 93 1 98 4.26e-14 68.2
MS.gene034522.t1 MTR_3g109930 32.283 127 71 3 1 122 1 117 5.54e-14 66.6
MS.gene034522.t1 MTR_3g102570 43.836 73 40 1 1 72 1 73 6.40e-14 68.2
MS.gene034522.t1 MTR_3g084980 54.386 57 26 0 1 57 1 57 6.81e-14 67.4
MS.gene034522.t1 MTR_4g036050 45.205 73 39 1 1 72 1 73 8.97e-14 66.2
MS.gene034522.t1 MTR_8g097090 52.632 57 27 0 1 57 1 57 9.31e-14 67.0
MS.gene034522.t1 MTR_4g036050 45.205 73 39 1 1 72 1 73 1.03e-13 65.9
MS.gene034522.t1 MTR_4g036050 45.205 73 39 1 1 72 1 73 1.10e-13 66.2
MS.gene034522.t1 MTR_6g015975 52.632 57 27 0 1 57 1 57 1.13e-13 67.0
MS.gene034522.t1 MTR_4g036050 45.205 73 39 1 1 72 1 73 1.18e-13 65.9
MS.gene034522.t1 MTR_3g067910 52.830 53 25 0 18 70 6 58 1.83e-13 63.5
MS.gene034522.t1 MTR_5g041650 50.000 54 27 0 1 54 38 91 2.01e-13 67.4
MS.gene034522.t1 MTR_4g109810 50.877 57 28 0 1 57 1 57 2.66e-13 65.9
MS.gene034522.t1 MTR_6g464720 50.000 58 29 0 1 58 1 58 3.28e-13 65.9
MS.gene034522.t1 MTR_1g041615 65.909 44 15 0 15 58 19 62 4.05e-13 63.2
MS.gene034522.t1 MTR_8g022970 42.647 68 39 0 3 70 19 86 8.94e-12 60.8
MS.gene034522.t1 MTR_4g108720 46.296 54 29 0 1 54 1 54 1.26e-11 62.0
MS.gene034522.t1 MTR_3g067870 50.000 52 26 0 18 69 92 143 2.06e-11 59.3
MS.gene034522.t1 MTR_2g016210 34.831 89 55 2 1 86 1 89 4.31e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene034522.t1 AT2G34440 44.444 171 85 4 1 161 1 171 1.04e-37 127
MS.gene034522.t1 AT3G66656 39.891 183 83 5 1 162 1 177 1.32e-32 114
MS.gene034522.t1 AT2G24840 42.742 124 65 2 1 121 62 182 1.76e-28 106
MS.gene034522.t1 AT5G60440 45.324 139 51 3 2 127 7 133 1.57e-26 102
MS.gene034522.t1 AT1G01530 40.288 139 79 2 1 139 6 140 5.00e-23 92.0
MS.gene034522.t1 AT1G65360 40.708 113 64 1 1 113 6 115 1.29e-21 87.8
MS.gene034522.t1 AT1G47760 56.061 66 28 1 1 65 1 66 4.64e-20 82.8
MS.gene034522.t1 AT4G36590 33.735 166 88 4 2 160 7 157 1.48e-19 82.8
MS.gene034522.t1 AT4G37940 40.909 110 64 1 1 110 1 109 1.81e-19 82.0
MS.gene034522.t1 AT4G37940 40.909 110 64 1 1 110 1 109 2.10e-19 81.6
MS.gene034522.t1 AT4G37940 40.909 110 64 1 1 110 1 109 2.96e-19 80.5
MS.gene034522.t1 AT5G13790 52.174 69 33 0 1 69 1 69 4.03e-19 82.0
MS.gene034522.t1 AT5G13790 52.174 69 33 0 1 69 1 69 4.29e-19 82.0
MS.gene034522.t1 AT3G61120 49.315 73 37 0 1 73 1 73 4.64e-19 81.3
MS.gene034522.t1 AT3G57230 50.725 69 34 0 1 69 1 69 9.37e-19 78.2
MS.gene034522.t1 AT3G57230 50.725 69 34 0 1 69 1 69 3.80e-18 79.0
MS.gene034522.t1 AT3G57230 50.725 69 34 0 1 69 1 69 3.80e-18 79.0
MS.gene034522.t1 AT2G45660 37.037 108 65 1 1 108 1 105 5.35e-18 76.6
MS.gene034522.t1 AT4G22950 41.304 92 50 1 1 92 1 88 6.85e-18 76.6
MS.gene034522.t1 AT3G57390 49.275 69 35 0 1 69 1 69 1.22e-17 77.4
MS.gene034522.t1 AT2G45660 37.037 108 65 1 1 108 1 105 2.27e-17 76.3
MS.gene034522.t1 AT4G09960 50.704 71 35 0 1 71 1 71 2.29e-17 76.6
MS.gene034522.t1 AT4G09960 50.704 71 35 0 1 71 2 72 2.36e-17 76.6
MS.gene034522.t1 AT4G09960 50.704 71 35 0 1 71 1 71 2.46e-17 76.3
MS.gene034522.t1 AT3G57390 49.275 69 35 0 1 69 1 69 2.48e-17 77.0
MS.gene034522.t1 AT2G22630 46.667 75 40 0 1 75 1 75 2.78e-17 76.3
MS.gene034522.t1 AT2G22630 46.667 75 40 0 1 75 1 75 2.78e-17 76.3
MS.gene034522.t1 AT4G09960 50.704 71 35 0 1 71 11 81 3.04e-17 76.6
MS.gene034522.t1 AT4G24540 38.947 95 57 1 1 95 1 94 4.04e-17 75.9
MS.gene034522.t1 AT4G09960 50.704 71 35 0 1 71 96 166 4.36e-17 77.4
MS.gene034522.t1 AT3G04100 47.692 65 34 0 2 66 14 78 4.50e-17 75.5
MS.gene034522.t1 AT4G09960 50.704 71 35 0 1 71 27 97 4.66e-17 76.3
MS.gene034522.t1 AT1G72350 54.286 70 30 1 2 71 43 110 4.99e-17 75.5
MS.gene034522.t1 AT2G45650 49.275 69 35 0 1 69 1 69 6.39e-17 75.9
MS.gene034522.t1 AT4G22950 41.304 92 50 1 1 92 1 88 7.04e-17 75.1
MS.gene034522.t1 AT4G22950 41.304 92 50 1 1 92 1 88 7.04e-17 75.1
MS.gene034522.t1 AT2G14210 47.297 74 38 1 1 73 1 74 1.34e-16 74.7
MS.gene034522.t1 AT1G29962 44.928 69 38 0 2 70 8 76 1.39e-16 73.6
MS.gene034522.t1 AT2G14210 47.297 74 38 1 1 73 1 74 1.63e-16 74.3
MS.gene034522.t1 AT1G28460 44.928 69 38 0 2 70 8 76 2.16e-16 73.2
MS.gene034522.t1 AT5G20240 44.304 79 42 1 1 77 1 79 3.13e-16 72.0
MS.gene034522.t1 AT3G54340 40.909 88 37 1 1 73 1 88 3.87e-16 73.6
MS.gene034522.t1 AT5G10140 54.386 57 26 0 1 57 1 57 5.58e-16 71.6
MS.gene034522.t1 AT5G51870 45.833 72 39 0 1 72 1 72 5.99e-16 71.6
MS.gene034522.t1 AT5G51860 46.575 73 39 0 1 73 1 73 6.32e-16 72.4
MS.gene034522.t1 AT5G51860 36.190 105 65 1 1 105 1 103 6.85e-16 72.4
MS.gene034522.t1 AT5G51870 45.833 72 39 0 1 72 1 72 7.18e-16 72.4
MS.gene034522.t1 AT2G22540 42.308 104 41 3 1 99 1 90 7.99e-16 72.8
MS.gene034522.t1 AT2G22540 42.308 104 41 3 1 99 1 90 7.99e-16 72.8
MS.gene034522.t1 AT1G46408 48.684 76 33 2 1 70 1 76 8.11e-16 73.2
MS.gene034522.t1 AT5G20240 44.304 79 42 1 1 77 1 79 8.63e-16 72.0
MS.gene034522.t1 AT5G10140 53.448 58 27 0 1 58 1 58 8.66e-16 71.6
MS.gene034522.t1 AT5G65070 50.000 58 29 0 1 58 1 58 8.82e-16 70.5
MS.gene034522.t1 AT5G51870 45.833 72 39 0 1 72 24 95 9.31e-16 71.6
MS.gene034522.t1 AT5G10140 54.386 57 26 0 1 57 1 57 9.70e-16 71.2
MS.gene034522.t1 AT2G42830 49.296 71 36 0 1 71 16 86 1.01e-15 72.4
MS.gene034522.t1 AT2G42830 49.296 71 36 0 1 71 16 86 1.12e-15 72.4
MS.gene034522.t1 AT4G11880 55.172 58 26 0 1 58 1 58 1.12e-15 71.2
MS.gene034522.t1 AT4G11880 55.172 58 26 0 1 58 1 58 1.12e-15 71.2
MS.gene034522.t1 AT5G51870 45.833 72 39 0 1 72 1 72 1.18e-15 72.0
MS.gene034522.t1 AT5G10140 54.386 57 26 0 1 57 1 57 1.23e-15 71.2
MS.gene034522.t1 AT3G58780 49.296 71 36 0 1 71 16 86 1.54e-15 72.0
MS.gene034522.t1 AT5G51870 45.833 72 39 0 1 72 11 82 1.69e-15 71.6
MS.gene034522.t1 AT3G58780 49.296 71 36 0 1 71 22 92 1.76e-15 72.0
MS.gene034522.t1 AT3G58780 49.296 71 36 0 1 71 16 86 2.29e-15 72.0
MS.gene034522.t1 AT1G77980 44.578 83 44 2 1 81 1 83 2.38e-15 72.4
MS.gene034522.t1 AT5G65070 50.000 58 29 0 1 58 1 58 2.45e-15 70.5
MS.gene034522.t1 AT4G11880 55.172 58 26 0 1 58 1 58 2.85e-15 70.9
MS.gene034522.t1 AT4G11880 55.172 58 26 0 1 58 1 58 2.85e-15 70.9
MS.gene034522.t1 AT4G18960 38.835 103 59 1 2 100 18 120 2.99e-15 71.2
MS.gene034522.t1 AT1G77950 44.578 83 44 2 1 81 1 83 3.24e-15 71.2
MS.gene034522.t1 AT1G77950 44.578 83 44 2 1 81 1 83 3.24e-15 71.2
MS.gene034522.t1 AT1G77950 44.578 83 44 2 1 81 1 83 3.24e-15 71.2
MS.gene034522.t1 AT1G77950 44.578 83 44 2 1 81 1 83 3.24e-15 71.2
MS.gene034522.t1 AT3G30260 54.386 57 26 0 1 57 1 57 3.39e-15 71.2
MS.gene034522.t1 AT5G65070 47.692 65 32 1 1 63 1 65 4.12e-15 70.5
MS.gene034522.t1 AT5G65070 50.000 58 29 0 1 58 1 58 6.39e-15 70.1
MS.gene034522.t1 AT5G65070 50.000 58 29 0 1 58 1 58 7.44e-15 69.7
MS.gene034522.t1 AT2G22540 60.000 50 20 0 1 50 1 50 7.72e-15 70.1
MS.gene034522.t1 AT1G71692 47.222 72 37 1 1 71 1 72 8.13e-15 69.3
MS.gene034522.t1 AT5G62165 42.254 71 41 0 1 71 1 71 8.43e-15 68.2
MS.gene034522.t1 AT5G62165 42.254 71 41 0 1 71 1 71 8.43e-15 68.2
MS.gene034522.t1 AT5G62165 42.254 71 41 0 1 71 1 71 8.43e-15 68.2
MS.gene034522.t1 AT1G22130 45.205 73 39 1 1 72 1 73 1.11e-14 70.5
MS.gene034522.t1 AT3G58780 54.237 59 27 0 1 59 16 74 1.21e-14 69.7
MS.gene034522.t1 AT5G62165 42.254 71 41 0 1 71 1 71 1.25e-14 67.8
MS.gene034522.t1 AT5G62165 42.254 71 41 0 1 71 1 71 1.25e-14 67.8
MS.gene034522.t1 AT5G62165 42.254 71 41 0 1 71 1 71 1.25e-14 67.8
MS.gene034522.t1 AT5G62165 42.254 71 41 0 1 71 1 71 1.25e-14 67.8
MS.gene034522.t1 AT5G62165 42.254 71 41 0 1 71 1 71 1.25e-14 67.8
MS.gene034522.t1 AT3G58780 54.237 59 27 0 1 59 16 74 1.36e-14 69.7
MS.gene034522.t1 AT1G69120 61.224 49 19 0 1 49 1 49 2.00e-14 68.9
MS.gene034522.t1 AT2G03710 52.632 57 27 0 1 57 1 57 2.48e-14 67.8
MS.gene034522.t1 AT5G62165 42.254 71 41 0 1 71 1 71 2.58e-14 65.9
MS.gene034522.t1 AT5G62165 42.254 71 41 0 1 71 1 71 2.72e-14 67.8
MS.gene034522.t1 AT5G62165 42.254 71 41 0 1 71 1 71 2.72e-14 67.8
MS.gene034522.t1 AT5G62165 42.254 71 41 0 1 71 1 71 2.74e-14 68.2
MS.gene034522.t1 AT5G62165 42.254 71 41 0 1 71 1 71 2.74e-14 68.2
MS.gene034522.t1 AT5G62165 42.254 71 41 0 1 71 1 71 2.74e-14 68.2
MS.gene034522.t1 AT5G60910 50.877 57 28 0 1 57 1 57 2.89e-14 68.6
MS.gene034522.t1 AT1G69120 61.224 49 19 0 1 49 1 49 3.44e-14 68.6
MS.gene034522.t1 AT1G26310 59.184 49 20 0 1 49 1 49 4.44e-14 68.2
MS.gene034522.t1 AT5G65060 50.909 55 27 0 1 55 1 55 6.06e-14 66.6
MS.gene034522.t1 AT5G15800 52.632 57 27 0 1 57 1 57 6.31e-14 67.8
MS.gene034522.t1 AT5G23260 59.184 49 20 0 1 49 1 49 6.84e-14 67.4
MS.gene034522.t1 AT5G23260 59.184 49 20 0 1 49 1 49 6.92e-14 67.8
MS.gene034522.t1 AT3G02310 52.632 57 27 0 1 57 1 57 8.21e-14 66.6
MS.gene034522.t1 AT5G15800 52.632 57 27 0 1 57 1 57 8.96e-14 67.4
MS.gene034522.t1 AT5G23260 59.184 49 20 0 1 49 17 65 9.05e-14 67.4
MS.gene034522.t1 AT1G17310 52.857 70 31 1 2 71 48 115 9.28e-14 66.6
MS.gene034522.t1 AT5G23260 59.184 49 20 0 1 49 17 65 9.31e-14 67.4
MS.gene034522.t1 AT1G24260 52.632 57 27 0 1 57 1 57 9.76e-14 67.0
MS.gene034522.t1 AT5G65060 50.909 55 27 0 1 55 1 55 1.01e-13 66.2
MS.gene034522.t1 AT1G17310 52.857 70 31 1 2 71 59 126 1.03e-13 66.6
MS.gene034522.t1 AT1G24260 52.632 57 27 0 1 57 1 57 1.16e-13 67.0
MS.gene034522.t1 AT1G24260 52.632 57 27 0 1 57 1 57 1.17e-13 67.0
MS.gene034522.t1 AT5G65060 50.909 55 27 0 1 55 1 55 1.19e-13 66.2
MS.gene034522.t1 AT2G03710 43.750 80 43 1 1 78 1 80 1.22e-13 67.0
MS.gene034522.t1 AT2G03710 43.750 80 43 1 1 78 1 80 1.24e-13 67.0
MS.gene034522.t1 AT4G37435 29.605 152 85 5 1 151 1 131 1.25e-13 65.9
MS.gene034522.t1 AT3G02310 52.632 57 27 0 1 57 1 57 1.38e-13 66.6
MS.gene034522.t1 AT5G65050 49.091 55 28 0 1 55 1 55 1.38e-13 65.5
MS.gene034522.t1 AT5G65080 49.091 55 28 0 1 55 8 62 2.57e-13 65.1
MS.gene034522.t1 AT5G65080 49.091 55 28 0 1 55 8 62 2.96e-13 65.1
MS.gene034522.t1 AT5G65050 49.091 55 28 0 1 55 1 55 3.28e-13 64.7
MS.gene034522.t1 AT5G65050 49.091 55 28 0 1 55 1 55 3.38e-13 64.7
MS.gene034522.t1 AT1G28450 30.303 165 91 5 2 146 8 168 3.71e-13 64.7
MS.gene034522.t1 AT5G65050 49.091 55 28 0 1 55 1 55 3.76e-13 64.7
MS.gene034522.t1 AT1G18750 40.541 74 42 1 1 72 1 74 4.20e-13 66.2
MS.gene034522.t1 AT1G18750 40.541 74 42 1 1 72 1 74 4.36e-13 66.2
MS.gene034522.t1 AT1G18750 40.541 74 42 1 1 72 1 74 4.71e-13 66.2
MS.gene034522.t1 AT1G69540 43.836 73 40 1 1 72 1 73 7.94e-13 65.5
MS.gene034522.t1 AT1G69540 43.836 73 40 1 1 72 1 73 8.26e-13 65.5
MS.gene034522.t1 AT2G03060 52.000 50 24 0 1 50 1 50 2.20e-12 64.3
MS.gene034522.t1 AT2G03060 52.000 50 24 0 1 50 1 50 2.20e-12 64.3
MS.gene034522.t1 AT2G03060 52.000 50 24 0 1 50 1 50 2.20e-12 64.3
MS.gene034522.t1 AT2G03060 52.000 50 24 0 1 50 1 50 2.49e-12 64.3
MS.gene034522.t1 AT2G26320 43.103 58 33 0 1 58 17 74 2.71e-12 60.5
MS.gene034522.t1 AT5G49490 43.056 72 37 1 3 70 46 117 3.21e-12 63.5
MS.gene034522.t1 AT1G60920 42.466 73 37 2 3 70 5 77 4.99e-12 61.6
MS.gene034522.t1 AT5G38620 40.000 75 41 1 3 73 6 80 1.74e-11 61.6
MS.gene034522.t1 AT5G49420 39.726 73 40 1 3 71 8 80 2.41e-11 61.2
MS.gene034522.t1 AT1G77080 64.103 39 14 0 1 39 1 39 4.89e-11 58.5
MS.gene034522.t1 AT1G77080 64.103 39 14 0 1 39 1 39 5.85e-11 57.8
MS.gene034522.t1 AT1G77080 64.103 39 14 0 1 39 1 39 6.03e-11 58.5
MS.gene034522.t1 AT1G65300 36.782 87 52 3 3 86 2 88 8.28e-11 59.3
MS.gene034522.t1 AT1G77080 64.103 39 14 0 1 39 1 39 9.56e-11 58.2

Find 30 sgRNAs with CRISPR-Local

Find 33 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGAACAATCCTTATTCTTT+TGG 0.240671 1.4:+43411913 MS.gene034522:CDS
CTCATCTTATTCTCCGAATA+TGG 0.246894 1.4:+43412011 MS.gene034522:CDS
CCTGGGTGACCAAAAGAATA+AGG 0.337629 1.4:-43411922 None:intergenic
CTAGAACTTGTTGAGGTGTT+GGG 0.408328 1.4:+43412045 MS.gene034522:CDS
ATAAGATGAGGAGTTTACTA+TGG 0.410961 1.4:-43411998 None:intergenic
GCTATTGTTGTGTTCTCTCC+AGG 0.420934 1.4:+43411892 MS.gene034522:CDS
AAGCTTTAGTTTCAAATACT+TGG 0.421254 1.4:-43411962 None:intergenic
ATGTTTGATGCTTCTAGCTC+GGG 0.460885 1.4:+43412224 MS.gene034522:CDS
GCAGCAACAACATCAACTCC+TGG 0.473203 1.4:-43411940 None:intergenic
TCTAGCTCGGGATCCAGTTG+TGG 0.489119 1.4:+43412236 MS.gene034522:CDS
CACTTTCTCAAAGCGTCGGA+CGG 0.493597 1.4:+43411819 MS.gene034522:CDS
ACTTTCTCAAAGCGTCGGAC+GGG 0.513626 1.4:+43411820 MS.gene034522:CDS
AATGTTTGATGCTTCTAGCT+CGG 0.513731 1.4:+43412223 MS.gene034522:CDS
CTCTCAATTCTTTAAGCTCG+AGG 0.514790 1.4:-43412140 None:intergenic
CTAGCTCGGGATCCAGTTGT+GGG 0.517277 1.4:+43412237 MS.gene034522:CDS
TCTAGAACTTGTTGAGGTGT+TGG 0.548141 1.4:+43412044 MS.gene034522:CDS
GAAAGACTCCAACACGAGGC+AGG 0.554822 1.4:+43411795 MS.gene034522:CDS
CTATTGTTGTGTTCTCTCCA+GGG 0.556447 1.4:+43411893 MS.gene034522:CDS
AAAGAATAAGGATTGTTCCC+TGG 0.565551 1.4:-43411910 None:intergenic
GTCGCAAAATTAAAATAGAG+AGG 0.572448 1.4:+43411770 MS.gene034522:CDS
ATTGAATCTAGAACTTGTTG+AGG 0.572715 1.4:+43412038 MS.gene034522:CDS
CAGCAACAACATCAACTCCT+GGG 0.611229 1.4:-43411939 None:intergenic
TCGCAAAATTAAAATAGAGA+GGG 0.620927 1.4:+43411771 MS.gene034522:CDS
GAAAGTGACCTGCCTCGTGT+TGG 0.631102 1.4:-43411803 None:intergenic
AGGTCACTTTCTCAAAGCGT+CGG 0.635421 1.4:+43411815 MS.gene034522:CDS
GACTTCAGCTCCGCACAACA+TGG 0.644720 1.4:-43411869 None:intergenic
GTGTTGGGACAAGTTCAAGA+AGG 0.657260 1.4:+43412060 MS.gene034522:CDS
CATATTCGGAGAATAAGATG+AGG 0.677681 1.4:-43412010 None:intergenic
AATGAATTGTCCATGTTGTG+CGG 0.683772 1.4:+43411859 MS.gene034522:CDS
GGGTGAAAGACTCCAACACG+AGG 0.715970 1.4:+43411791 MS.gene034522:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGATTCAATTTTTCCATATT+CGG - chr1.4:43412027-43412046 None:intergenic 20.0%
! TCGCAAAATTAAAATAGAGA+GGG + chr1.4:43411771-43411790 MS.gene034522:CDS 25.0%
!! AAGCTTTAGTTTCAAATACT+TGG - chr1.4:43411965-43411984 None:intergenic 25.0%
ATAAGATGAGGAGTTTACTA+TGG - chr1.4:43412001-43412020 None:intergenic 30.0%
GTCGCAAAATTAAAATAGAG+AGG + chr1.4:43411770-43411789 MS.gene034522:CDS 30.0%
!! ATTGAATCTAGAACTTGTTG+AGG + chr1.4:43412038-43412057 MS.gene034522:CDS 30.0%
AAAGAATAAGGATTGTTCCC+TGG - chr1.4:43411913-43411932 None:intergenic 35.0%
AATGAATTGTCCATGTTGTG+CGG + chr1.4:43411859-43411878 MS.gene034522:CDS 35.0%
CATATTCGGAGAATAAGATG+AGG - chr1.4:43412013-43412032 None:intergenic 35.0%
CTCATCTTATTCTCCGAATA+TGG + chr1.4:43412011-43412030 MS.gene034522:CDS 35.0%
! AATGTTTGATGCTTCTAGCT+CGG + chr1.4:43412223-43412242 MS.gene034522:CDS 35.0%
! GGGAACAATCCTTATTCTTT+TGG + chr1.4:43411913-43411932 MS.gene034522:CDS 35.0%
! TACTCTTTTATTCCCACAAC+TGG - chr1.4:43412252-43412271 None:intergenic 35.0%
CTATTGTTGTGTTCTCTCCA+GGG + chr1.4:43411893-43411912 MS.gene034522:CDS 40.0%
CTCTCAATTCTTTAAGCTCG+AGG - chr1.4:43412143-43412162 None:intergenic 40.0%
!! ATGTTTGATGCTTCTAGCTC+GGG + chr1.4:43412224-43412243 MS.gene034522:CDS 40.0%
!! CTAGAACTTGTTGAGGTGTT+GGG + chr1.4:43412045-43412064 MS.gene034522:CDS 40.0%
!! TCTAGAACTTGTTGAGGTGT+TGG + chr1.4:43412044-43412063 MS.gene034522:CDS 40.0%
CAGCAACAACATCAACTCCT+GGG - chr1.4:43411942-43411961 None:intergenic 45.0%
CCTGGGTGACCAAAAGAATA+AGG - chr1.4:43411925-43411944 None:intergenic 45.0%
GCTATTGTTGTGTTCTCTCC+AGG + chr1.4:43411892-43411911 MS.gene034522:CDS 45.0%
GTGTTGGGACAAGTTCAAGA+AGG + chr1.4:43412060-43412079 MS.gene034522:CDS 45.0%
! AGGTCACTTTCTCAAAGCGT+CGG + chr1.4:43411815-43411834 MS.gene034522:CDS 45.0%
! CCTTATTCTTTTGGTCACCC+AGG + chr1.4:43411922-43411941 MS.gene034522:CDS 45.0%
GCAGCAACAACATCAACTCC+TGG - chr1.4:43411943-43411962 None:intergenic 50.0%
!! ACTTTCTCAAAGCGTCGGAC+GGG + chr1.4:43411820-43411839 MS.gene034522:CDS 50.0%
!! CACTTTCTCAAAGCGTCGGA+CGG + chr1.4:43411819-43411838 MS.gene034522:CDS 50.0%
CTAGCTCGGGATCCAGTTGT+GGG + chr1.4:43412237-43412256 MS.gene034522:CDS 55.0%
GAAAGACTCCAACACGAGGC+AGG + chr1.4:43411795-43411814 MS.gene034522:CDS 55.0%
GAAAGTGACCTGCCTCGTGT+TGG - chr1.4:43411806-43411825 None:intergenic 55.0%
GACTTCAGCTCCGCACAACA+TGG - chr1.4:43411872-43411891 None:intergenic 55.0%
GGGTGAAAGACTCCAACACG+AGG + chr1.4:43411791-43411810 MS.gene034522:CDS 55.0%
! TCTAGCTCGGGATCCAGTTG+TGG + chr1.4:43412236-43412255 MS.gene034522:CDS 55.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 43411763 43412272 43411763 ID=MS.gene034522
chr1.4 mRNA 43411763 43412272 43411763 ID=MS.gene034522.t1;Parent=MS.gene034522
chr1.4 exon 43411763 43412272 43411763 ID=MS.gene034522.t1.exon1;Parent=MS.gene034522.t1
chr1.4 CDS 43411763 43412272 43411763 ID=cds.MS.gene034522.t1;Parent=MS.gene034522.t1
Gene Sequence

>MS.gene034522

ATGGGTCGTCGCAAAATTAAAATAGAGAGGGTGAAAGACTCCAACACGAGGCAGGTCACTTTCTCAAAGCGTCGGACGGGCTTATTCAAGAAAGCAAATGAATTGTCCATGTTGTGCGGAGCTGAAGTCGCTATTGTTGTGTTCTCTCCAGGGAACAATCCTTATTCTTTTGGTCACCCAGGAGTTGATGTTGTTGCTGCCAAGTATTTGAAACTAAAGCTTAAACGCATGAATTCCATAGTAAACTCCTCATCTTATTCTCCGAATATGGAAAAATTGAATCTAGAACTTGTTGAGGTGTTGGGACAAGTTCAAGAAGGTGAAAAGCAAGCTAAGAATCATGATGAGATTCTGAAGCAAAACAACGTGACAAAACTCCTCGAGCTTAAAGAATTGAGAGATTCATATAAAGAGCTTCAAGATTGCATAAAATTGCGTCTTAGTGATATCGAGATATCAGAATGTTTGATGCTTCTAGCTCGGGATCCAGTTGTGGGAATAAAAGAGTAA
Protein sequence

>MS.gene034522.t1

MGRRKIKIERVKDSNTRQVTFSKRRTGLFKKANELSMLCGAEVAIVVFSPGNNPYSFGHPGVDVVAAKYLKLKLKRMNSIVNSSSYSPNMEKLNLELVEVLGQVQEGEKQAKNHDEILKQNNVTKLLELKELRDSYKELQDCIKLRLSDIEISECLMLLARDPVVGIKE