AlfalfaGEDB | MS.gene034537

M. sativa cultivar XinJiangDaYe / MS.gene034537

KEGG: K09338
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: PF00046.32

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene034537.t1	XP_013467691.1	97.1	204	3	3	1	201	1	204	2.30E-101	378.3

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene034537.t1	P46665	41.8	251	85	6	1	201	1	240	3.4e-29	129.8

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene034537.t1	A0A072VJV2	97.1	204	3	3	1	201	1	204	1.7e-101	378.3

TFs/TRs:

Gene ID	Type	Classification
MS.gene034537.t1	TF	HB-other

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene034537.t1	MTR_1g054285	97.059	204	3	3	1	201	1	204	3.78e-141	395
MS.gene034537.t1	MTR_7g093430	60.377	212	71	8	1	201	1	210	8.57e-69	212
MS.gene034537.t1	MTR_2g061030	42.366	262	78	10	1	201	1	250	1.08e-33	123
MS.gene034537.t1	MTR_4g100550	53.659	123	46	2	81	201	57	170	4.45e-33	120
MS.gene034537.t1	MTR_5g013010	53.488	129	39	4	81	201	71	186	1.63e-32	116
MS.gene034537.t1	MTR_5g013010	53.488	129	39	4	81	201	71	186	1.03e-31	117
MS.gene034537.t1	MTR_4g097600	80.000	65	11	1	139	201	113	177	2.94e-28	107
MS.gene034537.t1	MTR_8g006705	54.054	111	45	1	97	201	86	196	2.18e-25	100
MS.gene034537.t1	MTR_5g014890	75.410	61	14	1	142	201	113	173	2.02e-23	94.4
MS.gene034537.t1	MTR_1g017090	44.444	135	55	5	79	201	54	180	5.24e-21	88.2
MS.gene034537.t1	MTR_3g103590	68.333	60	19	0	142	201	136	195	8.54e-21	88.2
MS.gene034537.t1	MTR_4g084750	73.684	57	14	1	146	201	59	115	1.17e-19	82.8
MS.gene034537.t1	MTR_4g126900	69.388	49	15	0	153	201	90	138	1.02e-16	75.5
MS.gene034537.t1	MTR_2g038625	57.353	68	28	1	134	201	66	132	3.95e-16	73.9
MS.gene034537.t1	MTR_2g038580	57.353	68	28	1	134	201	66	132	3.95e-16	73.9
MS.gene034537.t1	MTR_4g107650	50.602	83	37	2	119	201	67	145	3.19e-14	70.1
MS.gene034537.t1	MTR_7g010020	42.391	92	52	1	110	201	40	130	6.48e-14	68.9
MS.gene034537.t1	MTR_5g038280	48.611	72	34	1	130	201	69	137	2.83e-12	64.7
MS.gene034537.t1	MTR_8g089895	43.617	94	49	2	108	201	15	104	3.76e-12	64.3
MS.gene034537.t1	MTR_1g061660	50.909	55	27	0	147	201	55	109	6.07e-12	62.8
MS.gene034537.t1	MTR_6g007647	58.824	51	21	0	151	201	33	83	6.26e-12	63.2
MS.gene034537.t1	MTR_6g007647	58.824	51	21	0	151	201	67	117	8.15e-12	63.2
MS.gene034537.t1	MTR_3g086790	40.196	102	59	2	101	201	10	110	9.75e-12	62.8
MS.gene034537.t1	MTR_8g469430	54.902	51	23	0	151	201	89	139	4.18e-11	61.2
MS.gene034537.t1	MTR_5g039000	50.847	59	29	0	143	201	69	127	4.35e-11	60.8
MS.gene034537.t1	MTR_7g103340	48.276	58	30	0	144	201	56	113	5.20e-11	60.1

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene034537.t1	AT5G06710	41.406	256	79	7	1	201	1	240	7.50e-40	137
MS.gene034537.t1	AT5G06710	41.406	256	79	7	1	201	1	240	2.98e-39	137
MS.gene034537.t1	AT5G47370	48.795	166	66	8	48	201	22	180	1.76e-34	124
MS.gene034537.t1	AT4G17460	44.262	183	55	8	48	201	21	185	4.64e-30	112
MS.gene034537.t1	AT3G60390	51.429	140	46	6	81	201	76	212	5.64e-30	112
MS.gene034537.t1	AT4G16780	55.645	124	40	3	81	201	68	179	6.88e-28	106
MS.gene034537.t1	AT2G44910	48.905	137	47	4	81	201	84	213	9.67e-27	104
MS.gene034537.t1	AT2G22800	76.667	60	14	0	142	201	104	163	8.97e-25	98.2
MS.gene034537.t1	AT4G37790	76.667	60	14	0	142	201	117	176	2.55e-24	97.1
MS.gene034537.t1	AT5G06710	35.652	230	77	7	1	175	1	214	2.29e-20	85.9
MS.gene034537.t1	AT5G06710	35.652	230	77	7	1	175	1	214	2.29e-20	85.9
MS.gene034537.t1	AT2G01430	60.294	68	27	0	134	201	122	189	2.87e-20	85.1
MS.gene034537.t1	AT2G01430	60.294	68	27	0	134	201	122	189	9.28e-20	84.7
MS.gene034537.t1	AT1G70920	65.079	63	20	1	141	201	27	89	4.51e-17	75.5
MS.gene034537.t1	AT1G70920	65.079	63	20	1	141	201	57	119	7.70e-17	75.9
MS.gene034537.t1	AT2G36610	45.312	64	27	1	146	201	66	129	5.23e-11	59.7
MS.gene034537.t1	AT3G01470	56.863	51	22	0	151	201	68	118	6.77e-11	60.5

Find 0 sgRNAs with CRISPR-Local

Find 70 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AAATTAAATAAGAAATTTAC+AGG	-	10640:4435-4454	MS.gene034537:intergenic	10.0%
!!	AAATATATAAAACCATTTAG+AGG	-	10640:3796-3815	MS.gene034537:intergenic	15.0%
!!!	TGAAATGTCAATTTTTTTAA+CGG	+	10640:3993-4012	MS.gene034537:intron	15.0%
!!!	TTGTTTCTTCTTTTTAATTA+AGG	+	10640:4467-4486	MS.gene034537:intron	15.0%
!!	ATAGTAGATAGAAAATTACA+TGG	-	10640:3759-3778	MS.gene034537:intergenic	20.0%
!!!	TTTTTGTTTTTGTTATCATC+AGG	+	10640:4120-4139	MS.gene034537:intron	20.0%
!	AGATAGAAAATTACATGGTT+GGG	-	10640:3754-3773	MS.gene034537:intergenic	25.0%
!	TAGATAGAAAATTACATGGT+TGG	-	10640:3755-3774	MS.gene034537:intergenic	25.0%
!!	AGAAAAGAGATAGGTAATTT+TGG	-	10640:3561-3580	MS.gene034537:intergenic	25.0%
!!	ATCATTTTCTTTCCTCTAAA+TGG	+	10640:3781-3800	MS.gene034537:intron	25.0%
!!	TTAAAGTGCTTGAAAATTGT+GGG	+	10640:3896-3915	MS.gene034537:intron	25.0%
!!	TTTAAAGTGCTTGAAAATTG+TGG	+	10640:3895-3914	MS.gene034537:intron	25.0%
!!!	TCAATTTTTTTAACGGATCT+AGG	+	10640:4000-4019	MS.gene034537:intron	25.0%
	AAAACCTTGAACCAAATCTT+GGG	-	10640:3934-3953	MS.gene034536:intergenic	30.0%
	AAAGCTTCAGAAGAAAAAAG+AGG	+	10640:3633-3652	MS.gene034537:CDS	30.0%
	AATAACAATGCTGAATATGG+AGG	+	10640:4267-4286	MS.gene034537:CDS	30.0%
	AGAAACAAGAGAGAAAATGA+AGG	+	10640:4291-4310	MS.gene034537:CDS	30.0%
	AGGAATAACAATGCTGAATA+TGG	+	10640:4264-4283	MS.gene034537:CDS	30.0%
	ATACTGAAATCCATTGCAAA+TGG	-	10640:4243-4262	MS.gene034537:intergenic	30.0%
	GAAATTTACAGGATTAAGAG+TGG	-	10640:4424-4443	MS.gene034537:intergenic	30.0%
!	GAAGTGATGATGATGAAAAT+GGG	+	10640:4328-4347	MS.gene034537:CDS	30.0%
!!!	TTGTTTTTGTTATCATCAGG+TGG	+	10640:4123-4142	MS.gene034537:intron	30.0%
	ATGATGAAAATGGGTCAACT+AGG	+	10640:4337-4356	MS.gene034537:CDS	35.0%
	CAAAACCTTGAACCAAATCT+TGG	-	10640:3935-3954	MS.gene034537:intergenic	35.0%
	GGTTTGTCAAGAAAAGAGAT+AGG	-	10640:3570-3589	MS.gene034537:intergenic	35.0%
	TTGAATTTGCACCCAAGATT+TGG	+	10640:3920-3939	MS.gene034537:intron	35.0%
!	GGAAGTGATGATGATGAAAA+TGG	+	10640:4327-4346	MS.gene034537:CDS	35.0%
!	TTGCAATGGATTTCAGTATG+AGG	+	10640:4244-4263	MS.gene034537:CDS	35.0%
!!!	TTCTGAAGCTTTTCCTTGTT+GGG	-	10640:3625-3644	MS.gene034537:intergenic	35.0%
	AACCAAACTTCAACTTGACG+AGG	-	10640:4572-4591	MS.gene034537:intergenic	40.0%
	AATGAAGGTGAAGCTGAAAG+AGG	+	10640:4306-4325	MS.gene034537:CDS	40.0%
	AGAAGGTCTAGTTGAATAGG+TGG	-	10640:3669-3688	MS.gene034537:intergenic	40.0%
	AGTTTCTTCTCAACCCAACA+AGG	+	10640:3609-3628	MS.gene034537:CDS	40.0%
	GATCTAAGAACAGGAGAGAA+AGG	-	10640:3693-3712	MS.gene034537:intergenic	40.0%
	GGAAGAAGGTCTAGTTGAAT+AGG	-	10640:3672-3691	MS.gene034537:intergenic	40.0%
	GTAGAAGCAAAAACTTGCAC+TGG	+	10640:4526-4545	MS.gene034537:intron	40.0%
	GTTGAGAAGAAACTTGGTAG+TGG	-	10640:3603-3622	MS.gene034537:intergenic	40.0%
	TTCTGTGTCACCATTTGCAA+TGG	+	10640:4230-4249	MS.gene034537:CDS	40.0%
!	ATGGAACTTGCTTTGAGCTT+AGG	+	10640:3528-3547	MS.gene034537:CDS	40.0%
!	TTTGTTATCATCAGGTGGAC+CGG	+	10640:4128-4147	MS.gene034537:intron	40.0%
!!	ACTTGGTAGTGGATCTTTGT+TGG	-	10640:3592-3611	MS.gene034537:intergenic	40.0%
!!	CTTGGTAGTGGATCTTTGTT+GGG	-	10640:3591-3610	MS.gene034537:intergenic	40.0%
!!	TGTTGGGTTGAGAAGAAACT+TGG	-	10640:3609-3628	MS.gene034537:intergenic	40.0%
!!!	CTTCTGAAGCTTTTCCTTGT+TGG	-	10640:3626-3645	MS.gene034537:intergenic	40.0%
	AAATGGTGACACAGAACTGC+TGG	-	10640:4226-4245	MS.gene034537:intergenic	45.0%
	AATGGTGACACAGAACTGCT+GGG	-	10640:4225-4244	MS.gene034537:intergenic	45.0%
	GAACAGGAGAGAAAGGAAGA+AGG	-	10640:3686-3705	MS.gene034537:intergenic	45.0%
!	TGCACCCAAGATTTGGTTCA+AGG	+	10640:3927-3946	MS.gene034537:intron	45.0%
!!	GTCCTCGTCAAGTTGAAGTT+TGG	+	10640:4567-4586	MS.gene034537:CDS	45.0%
	ATGGTGACACAGAACTGCTG+GGG	-	10640:4224-4243	MS.gene034537:intergenic	50.0%
	GAATGGGGAGGTGAGAAGAA+GGG	-	10640:3722-3741	MS.gene034537:intergenic	50.0%
	GGGTGAGGAGATCTAAGAAC+AGG	-	10640:3702-3721	MS.gene034537:intergenic	50.0%
	TTACATGGTTGGGTGAGCCA+AGG	-	10640:3744-3763	MS.gene034537:intergenic	50.0%
!	GCTAGACGTGAACCGTTTTC+CGG	+	10640:4158-4177	MS.gene034537:CDS	50.0%
	ACTGCTGGGGGATGACAATG+AGG	-	10640:4211-4230	MS.gene034537:intergenic	55.0%
	ATCATCAGGTGGACCGGTGA+GGG	+	10640:4134-4153	MS.gene034537:intron	55.0%
	CTTCTCACCTCCCCATTCCT+TGG	+	10640:3724-3743	MS.gene034537:CDS	55.0%
	GGAATGGGGAGGTGAGAAGA+AGG	-	10640:3723-3742	MS.gene034537:intergenic	55.0%
	GGTTGGGTGAGCCAAGGAAT+GGG	-	10640:3738-3757	MS.gene034537:intergenic	55.0%
	GTTGGGTGAGCCAAGGAATG+GGG	-	10640:3737-3756	MS.gene034537:intergenic	55.0%
	TATCATCAGGTGGACCGGTG+AGG	+	10640:4133-4152	MS.gene034537:intron	55.0%
	TGGTGACACAGAACTGCTGG+GGG	-	10640:4223-4242	MS.gene034537:intergenic	55.0%
	TGGTTGGGTGAGCCAAGGAA+TGG	-	10640:3739-3758	MS.gene034537:intergenic	55.0%
!	TTCACGTCTAGCTCCCTCAC+CGG	-	10640:4150-4169	MS.gene034537:intergenic	55.0%
	ACGACCGAAGACGTCGACGA+CGG	+	10640:4183-4202	MS.gene034537:CDS	60.0%
	CTTCGGTCGTCGCCGGAAAA+CGG	-	10640:4173-4192	MS.gene034537:intergenic	60.0%
	GGGAGGTGAGAAGAAGGGTG+AGG	-	10640:3717-3736	MS.gene034537:intergenic	60.0%
	GGTACCGTCGTCGACGTCTT+CGG	-	10640:4190-4209	MS.gene034537:intergenic	60.0%
	GGGTGAGCCAAGGAATGGGG+AGG	-	10640:3734-3753	MS.gene034537:intergenic	65.0%
	TCGACGTCTTCGGTCGTCGC+CGG	-	10640:4180-4199	MS.gene034537:intergenic	65.0%

Chromosome	Type	Strat	End	Strand	Name
10640	gene	3528	4609	3528	ID=MS.gene034537
10640	mRNA	3528	4609	3528	ID=MS.gene034537.t1;Parent=MS.gene034537
10640	exon	3528	3759	3528	ID=MS.gene034537.t1.exon1;Parent=MS.gene034537.t1
10640	CDS	3528	3759	3528	ID=cds.MS.gene034537.t1;Parent=MS.gene034537.t1
10640	exon	4142	4434	4142	ID=MS.gene034537.t1.exon2;Parent=MS.gene034537.t1
10640	CDS	4142	4434	4142	ID=cds.MS.gene034537.t1;Parent=MS.gene034537.t1
10640	exon	4530	4609	4530	ID=MS.gene034537.t1.exon3;Parent=MS.gene034537.t1
10640	CDS	4530	4609	4530	ID=cds.MS.gene034537.t1;Parent=MS.gene034537.t1

Gene Sequence

>MS.gene034537

ATGGAACTTGCTTTGAGCTTAGGTGACACACCAAAATTACCTATCTCTTTTCTTGACAAACCCAACAAAGATCCACTACCAAGTTTCTTCTCAACCCAACAAGGAAAAGCTTCAGAAGAAAAAAGAGGTTCTTCAGATCCACCTATTCAACTAGACCTTCTTCCTTTCTCTCCTGTTCTTAGATCTCCTCACCCTTCTTCTCACCTCCCCATTCCTTGGCTCACCCAACCATGTAATTTTCTATCTACTATAAATCATTTTCTTTCCTCTAAATGGTTTTATATATTTGTTTAATATCTAGATAAATTTGTTTAATTTTATTTTGTTTTTATAGATTTAATTTTATCTTTTTTGTTTTTTTTTTTGTTTTAAAGTGCTTGAAAATTGTGGGTTTGAATTTGCACCCAAGATTTGGTTCAAGGTTTTGCATATTCTTGACTAATGCTTATTGAAAAATATTTGTTATGAAATGTCAATTTTTTTAACGGATCTAGGTTACTTCGAGATATTAGTCTTTGCAGTTACGCGCATGAATTCATATTGTTATAAAAAAAAATTGAAAATATATTTAAAGTTGTATATACTCAATCATTTTTTGTTTTTGTTATCATCAGGTGGACCGGTGAGGGAGCTAGACGTGAACCGTTTTCCGGCGACGACCGAAGACGTCGACGACGGTACCTCATTGTCATCCCCCAGCAGTTCTGTGTCACCATTTGCAATGGATTTCAGTATGAGGAATAACAATGCTGAATATGGAGGAAGAAACAAGAGAGAAAATGAAGGTGAAGCTGAAAGAGGAAGTGATGATGATGAAAATGGGTCAACTAGGAAGAAACTAAGACTCTCTAAAGATCAATCTGCTTTTCTTGAAGAAAGTTTCAAAGAACACACCACTCTTAATCCTGTAAATTTCTTATTTAATTTTTGTTTATTTACTTGTTTCTTCTTTTTAATTAAGGTTTATTTGTTAATTAATCATGTTTATTTATTTGCTTGTAGAAGCAAAAACTTGCACTGGCAAAACAGTTGAATCTTAGTCCTCGTCAAGTTGAAGTTTGGTTTCAAAATAGAAGAGCAAG

Protein sequence

>MS.gene034537.t1

MELALSLGDTPKLPISFLDKPNKDPLPSFFSTQQGKASEEKRGSSDPPIQLDLLPFSPVLRSPHPSSHLPIPWLTQPCGPVRELDVNRFPATTEDVDDGTSLSSPSSSVSPFAMDFSMRNNNAEYGGRNKRENEGEAERGSDDDENGSTRKKLRLSKDQSAFLEESFKEHTTLNPKQKLALAKQLNLSPRQVEVWFQNRRA