Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene034747.t1 | XP_013467842.1 | 68.1 | 288 | 6 | 1 | 1 | 202 | 1 | 288 | 1.40E-103 | 385.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene034747.t1 | Q9SVC5 | 40.9 | 237 | 97 | 8 | 5 | 201 | 13 | 246 | 4.5e-37 | 156.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene034747.t1 | A0A072VIR1 | 68.1 | 288 | 6 | 1 | 1 | 202 | 1 | 288 | 1.0e-103 | 385.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene034747.t1 | TF | C2C2-Dof |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene034747.t1 | MTR_1g056810 | 95.588 | 136 | 6 | 0 | 67 | 202 | 153 | 288 | 4.67e-90 | 266 |
MS.gene034747.t1 | MTR_1g056810 | 85.185 | 81 | 12 | 0 | 1 | 81 | 1 | 81 | 2.86e-45 | 151 |
MS.gene034747.t1 | MTR_3g090430 | 87.692 | 65 | 7 | 1 | 3 | 66 | 41 | 105 | 4.66e-37 | 131 |
MS.gene034747.t1 | MTR_2g093220 | 90.741 | 54 | 5 | 0 | 13 | 66 | 41 | 94 | 6.27e-31 | 114 |
MS.gene034747.t1 | MTR_8g027295 | 57.426 | 101 | 28 | 2 | 13 | 113 | 25 | 110 | 4.18e-30 | 112 |
MS.gene034747.t1 | MTR_3g091820 | 87.037 | 54 | 7 | 0 | 13 | 66 | 44 | 97 | 5.44e-30 | 112 |
MS.gene034747.t1 | MTR_4g063780 | 78.947 | 57 | 12 | 0 | 14 | 70 | 77 | 133 | 2.07e-29 | 111 |
MS.gene034747.t1 | MTR_8g479350 | 81.034 | 58 | 11 | 0 | 8 | 65 | 64 | 121 | 2.58e-29 | 111 |
MS.gene034747.t1 | MTR_4g088580 | 84.906 | 53 | 8 | 0 | 14 | 66 | 57 | 109 | 3.06e-29 | 112 |
MS.gene034747.t1 | MTR_4g461080 | 90.196 | 51 | 5 | 0 | 14 | 64 | 31 | 81 | 5.86e-29 | 109 |
MS.gene034747.t1 | MTR_1g077600 | 75.410 | 61 | 15 | 0 | 6 | 66 | 37 | 97 | 1.06e-28 | 108 |
MS.gene034747.t1 | MTR_1g077600 | 75.410 | 61 | 15 | 0 | 6 | 66 | 37 | 97 | 1.25e-28 | 108 |
MS.gene034747.t1 | MTR_7g059400 | 81.132 | 53 | 10 | 0 | 14 | 66 | 78 | 130 | 4.44e-28 | 108 |
MS.gene034747.t1 | MTR_8g068210 | 75.862 | 58 | 14 | 0 | 9 | 66 | 29 | 86 | 6.01e-28 | 107 |
MS.gene034747.t1 | MTR_2g096740 | 77.358 | 53 | 12 | 0 | 14 | 66 | 64 | 116 | 1.09e-27 | 106 |
MS.gene034747.t1 | MTR_2g096740 | 77.358 | 53 | 12 | 0 | 14 | 66 | 79 | 131 | 1.14e-27 | 106 |
MS.gene034747.t1 | MTR_7g024670 | 75.410 | 61 | 13 | 1 | 14 | 72 | 79 | 139 | 2.27e-27 | 107 |
MS.gene034747.t1 | MTR_5g031440 | 87.755 | 49 | 6 | 0 | 14 | 62 | 45 | 93 | 6.09e-27 | 105 |
MS.gene034747.t1 | MTR_3g077750 | 81.132 | 53 | 10 | 0 | 10 | 62 | 59 | 111 | 7.98e-27 | 104 |
MS.gene034747.t1 | MTR_4g022370 | 79.245 | 53 | 11 | 0 | 14 | 66 | 84 | 136 | 1.38e-26 | 104 |
MS.gene034747.t1 | MTR_2g014060 | 84.000 | 50 | 8 | 0 | 14 | 63 | 27 | 76 | 1.49e-26 | 103 |
MS.gene034747.t1 | MTR_4g109980 | 85.714 | 49 | 7 | 0 | 14 | 62 | 42 | 90 | 8.10e-26 | 101 |
MS.gene034747.t1 | MTR_8g015840 | 72.881 | 59 | 14 | 1 | 14 | 70 | 22 | 80 | 2.73e-25 | 98.2 |
MS.gene034747.t1 | MTR_4g089095 | 75.926 | 54 | 12 | 1 | 13 | 66 | 51 | 103 | 4.70e-25 | 99.4 |
MS.gene034747.t1 | MTR_8g079060 | 55.405 | 74 | 33 | 0 | 14 | 87 | 31 | 104 | 4.92e-25 | 97.8 |
MS.gene034747.t1 | MTR_4g089095 | 75.926 | 54 | 12 | 1 | 13 | 66 | 17 | 69 | 5.94e-25 | 98.6 |
MS.gene034747.t1 | MTR_2g059540 | 78.431 | 51 | 11 | 0 | 10 | 60 | 29 | 79 | 9.69e-25 | 96.7 |
MS.gene034747.t1 | MTR_2g014170 | 85.106 | 47 | 7 | 0 | 14 | 60 | 47 | 93 | 9.83e-25 | 98.6 |
MS.gene034747.t1 | MTR_3g435480 | 69.643 | 56 | 17 | 0 | 14 | 69 | 138 | 193 | 1.28e-24 | 100 |
MS.gene034747.t1 | MTR_2g013370 | 74.074 | 54 | 13 | 1 | 13 | 66 | 47 | 99 | 1.62e-24 | 97.4 |
MS.gene034747.t1 | MTR_7g010950 | 51.163 | 86 | 41 | 1 | 6 | 91 | 130 | 214 | 1.78e-24 | 100 |
MS.gene034747.t1 | MTR_6g012450 | 62.121 | 66 | 24 | 1 | 6 | 71 | 131 | 195 | 3.26e-23 | 96.7 |
MS.gene034747.t1 | MTR_2g016030 | 64.516 | 62 | 21 | 1 | 4 | 65 | 40 | 100 | 1.05e-22 | 90.1 |
MS.gene034747.t1 | MTR_4g082060 | 65.000 | 60 | 20 | 1 | 6 | 65 | 117 | 175 | 1.28e-22 | 94.7 |
MS.gene034747.t1 | MTR_7g086780 | 52.703 | 74 | 35 | 0 | 14 | 87 | 101 | 174 | 1.61e-22 | 94.4 |
MS.gene034747.t1 | MTR_5g041420 | 59.375 | 64 | 25 | 1 | 6 | 69 | 133 | 195 | 3.77e-22 | 92.0 |
MS.gene034747.t1 | MTR_6g027450 | 52.055 | 73 | 32 | 1 | 14 | 83 | 91 | 163 | 7.22e-22 | 91.3 |
MS.gene034747.t1 | MTR_8g044220 | 59.016 | 61 | 24 | 1 | 6 | 66 | 113 | 172 | 1.02e-21 | 92.0 |
MS.gene034747.t1 | MTR_5g041530 | 60.938 | 64 | 24 | 1 | 2 | 65 | 131 | 193 | 5.76e-21 | 89.4 |
MS.gene034747.t1 | MTR_5g041380 | 46.000 | 100 | 44 | 3 | 1 | 91 | 117 | 215 | 7.31e-21 | 89.0 |
MS.gene034747.t1 | MTR_6g027460 | 65.385 | 52 | 18 | 0 | 14 | 65 | 98 | 149 | 1.12e-20 | 88.6 |
MS.gene034747.t1 | MTR_5g041400 | 65.385 | 52 | 18 | 0 | 14 | 65 | 121 | 172 | 1.05e-19 | 85.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene034747.t1 | AT3G52440 | 41.558 | 231 | 93 | 7 | 9 | 202 | 22 | 247 | 1.09e-44 | 149 |
MS.gene034747.t1 | AT3G52440 | 41.558 | 231 | 93 | 7 | 9 | 202 | 41 | 266 | 1.18e-44 | 149 |
MS.gene034747.t1 | AT1G21340 | 87.500 | 56 | 7 | 0 | 11 | 66 | 37 | 92 | 2.07e-32 | 117 |
MS.gene034747.t1 | AT3G61850 | 72.222 | 72 | 20 | 0 | 1 | 72 | 51 | 122 | 4.25e-32 | 117 |
MS.gene034747.t1 | AT3G61850 | 72.222 | 72 | 20 | 0 | 1 | 72 | 51 | 122 | 4.25e-32 | 117 |
MS.gene034747.t1 | AT3G61850 | 72.222 | 72 | 20 | 0 | 1 | 72 | 63 | 134 | 5.81e-32 | 117 |
MS.gene034747.t1 | AT3G61850 | 72.222 | 72 | 20 | 0 | 1 | 72 | 51 | 122 | 6.47e-32 | 117 |
MS.gene034747.t1 | AT5G60200 | 78.689 | 61 | 13 | 0 | 9 | 69 | 52 | 112 | 7.73e-32 | 116 |
MS.gene034747.t1 | AT3G61850 | 72.222 | 72 | 20 | 0 | 1 | 72 | 63 | 134 | 8.75e-32 | 117 |
MS.gene034747.t1 | AT4G24060 | 88.889 | 54 | 6 | 0 | 13 | 66 | 54 | 107 | 1.15e-30 | 115 |
MS.gene034747.t1 | AT2G28510 | 84.211 | 57 | 9 | 0 | 13 | 69 | 49 | 105 | 2.53e-30 | 113 |
MS.gene034747.t1 | AT1G07640 | 83.333 | 54 | 9 | 0 | 14 | 67 | 23 | 76 | 1.64e-29 | 110 |
MS.gene034747.t1 | AT1G07640 | 83.333 | 54 | 9 | 0 | 14 | 67 | 79 | 132 | 1.71e-29 | 112 |
MS.gene034747.t1 | AT1G07640 | 83.333 | 54 | 9 | 0 | 14 | 67 | 87 | 140 | 2.06e-29 | 111 |
MS.gene034747.t1 | AT3G55370 | 81.034 | 58 | 11 | 0 | 13 | 70 | 77 | 134 | 2.41e-29 | 111 |
MS.gene034747.t1 | AT3G55370 | 81.034 | 58 | 11 | 0 | 13 | 70 | 122 | 179 | 2.84e-29 | 112 |
MS.gene034747.t1 | AT3G55370 | 81.034 | 58 | 11 | 0 | 13 | 70 | 77 | 134 | 2.90e-29 | 111 |
MS.gene034747.t1 | AT2G37590 | 84.906 | 53 | 8 | 0 | 14 | 66 | 91 | 143 | 7.25e-29 | 110 |
MS.gene034747.t1 | AT4G00940 | 85.185 | 54 | 8 | 0 | 13 | 66 | 69 | 122 | 2.14e-28 | 108 |
MS.gene034747.t1 | AT4G00940 | 85.185 | 54 | 8 | 0 | 13 | 66 | 69 | 122 | 2.14e-28 | 108 |
MS.gene034747.t1 | AT4G00940 | 85.185 | 54 | 8 | 0 | 13 | 66 | 69 | 122 | 2.14e-28 | 108 |
MS.gene034747.t1 | AT5G60850 | 75.000 | 60 | 15 | 0 | 11 | 70 | 50 | 109 | 7.41e-28 | 107 |
MS.gene034747.t1 | AT3G45610 | 76.786 | 56 | 13 | 0 | 14 | 69 | 42 | 97 | 9.39e-28 | 105 |
MS.gene034747.t1 | AT5G02460 | 81.132 | 53 | 10 | 0 | 14 | 66 | 97 | 149 | 1.00e-27 | 108 |
MS.gene034747.t1 | AT5G65590 | 79.245 | 53 | 11 | 0 | 14 | 66 | 43 | 95 | 1.20e-27 | 106 |
MS.gene034747.t1 | AT2G46590 | 93.617 | 47 | 3 | 0 | 13 | 59 | 69 | 115 | 1.65e-27 | 107 |
MS.gene034747.t1 | AT2G46590 | 93.617 | 47 | 3 | 0 | 13 | 59 | 81 | 127 | 1.93e-27 | 107 |
MS.gene034747.t1 | AT2G28810 | 82.000 | 50 | 9 | 0 | 14 | 63 | 79 | 128 | 2.22e-27 | 106 |
MS.gene034747.t1 | AT2G28810 | 82.000 | 50 | 9 | 0 | 14 | 63 | 96 | 145 | 3.31e-27 | 105 |
MS.gene034747.t1 | AT1G28310 | 81.132 | 53 | 10 | 0 | 14 | 66 | 29 | 81 | 4.65e-27 | 105 |
MS.gene034747.t1 | AT1G28310 | 81.132 | 53 | 10 | 0 | 14 | 66 | 53 | 105 | 6.03e-27 | 105 |
MS.gene034747.t1 | AT1G51700 | 77.193 | 57 | 12 | 1 | 14 | 69 | 35 | 91 | 8.72e-27 | 101 |
MS.gene034747.t1 | AT3G21270 | 84.314 | 51 | 8 | 0 | 14 | 64 | 31 | 81 | 1.63e-26 | 101 |
MS.gene034747.t1 | AT5G62940 | 85.714 | 49 | 7 | 0 | 14 | 62 | 75 | 123 | 2.27e-26 | 104 |
MS.gene034747.t1 | AT4G21050 | 77.358 | 53 | 12 | 0 | 14 | 66 | 26 | 78 | 2.90e-26 | 100 |
MS.gene034747.t1 | AT1G64620 | 87.755 | 49 | 6 | 0 | 13 | 61 | 50 | 98 | 6.95e-26 | 102 |
MS.gene034747.t1 | AT3G50410 | 72.727 | 55 | 15 | 0 | 14 | 68 | 32 | 86 | 4.48e-25 | 98.6 |
MS.gene034747.t1 | AT1G29160 | 48.889 | 90 | 42 | 2 | 1 | 87 | 52 | 140 | 1.29e-24 | 95.5 |
MS.gene034747.t1 | AT4G38000 | 61.765 | 68 | 25 | 1 | 7 | 74 | 36 | 102 | 2.65e-24 | 96.3 |
MS.gene034747.t1 | AT1G69570 | 75.000 | 52 | 13 | 0 | 14 | 65 | 134 | 185 | 9.55e-24 | 97.4 |
MS.gene034747.t1 | AT3G47500 | 51.111 | 90 | 36 | 3 | 6 | 92 | 105 | 189 | 1.43e-23 | 97.4 |
MS.gene034747.t1 | AT5G66940 | 63.333 | 60 | 22 | 0 | 13 | 72 | 33 | 92 | 1.74e-23 | 93.6 |
MS.gene034747.t1 | AT4G21040 | 64.516 | 62 | 22 | 0 | 14 | 75 | 27 | 88 | 1.96e-23 | 93.6 |
MS.gene034747.t1 | AT2G34140 | 71.154 | 52 | 15 | 0 | 14 | 65 | 60 | 111 | 4.33e-23 | 91.3 |
MS.gene034747.t1 | AT1G26790 | 48.485 | 99 | 46 | 3 | 6 | 100 | 106 | 203 | 8.81e-23 | 94.4 |
MS.gene034747.t1 | AT1G47655 | 78.723 | 47 | 10 | 0 | 14 | 60 | 31 | 77 | 9.18e-23 | 91.3 |
MS.gene034747.t1 | AT5G39660 | 66.667 | 60 | 19 | 1 | 6 | 65 | 133 | 191 | 1.96e-22 | 94.4 |
MS.gene034747.t1 | AT5G39660 | 66.667 | 60 | 19 | 1 | 6 | 65 | 133 | 191 | 1.96e-22 | 94.4 |
MS.gene034747.t1 | AT5G39660 | 66.667 | 60 | 19 | 1 | 6 | 65 | 133 | 191 | 1.96e-22 | 94.4 |
MS.gene034747.t1 | AT5G62430 | 63.333 | 60 | 21 | 1 | 6 | 65 | 49 | 107 | 2.48e-22 | 92.0 |
MS.gene034747.t1 | AT4G21080 | 61.290 | 62 | 24 | 0 | 14 | 75 | 27 | 88 | 6.61e-22 | 90.1 |
MS.gene034747.t1 | AT4G21030 | 46.053 | 76 | 37 | 1 | 14 | 89 | 23 | 94 | 3.30e-15 | 71.2 |
Find 43 sgRNAs with CRISPR-Local
Find 63 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAACCTCCACCACCATTTCT+TGG | 0.233577 | 1.4:+47155682 | MS.gene034747:CDS |
GAACCACATCTTGGACAATT+TGG | 0.236842 | 1.4:-47154929 | None:intergenic |
CAGACTTGTTAATCGGTAAT+TGG | 0.248583 | 1.4:+47155725 | MS.gene034747:CDS |
GTTGTGGATGGTAATTGTTC+TGG | 0.295167 | 1.4:-47155460 | None:intergenic |
GTTAATCATCATTTCAGAAT+TGG | 0.308733 | 1.4:-47155641 | None:intergenic |
ATCCTTGTCTAGAAAATTCA+AGG | 0.352452 | 1.4:+47155356 | MS.gene034747:intron |
CATGATGCAGACTTGTTAAT+CGG | 0.365024 | 1.4:+47155718 | MS.gene034747:CDS |
GCAAAGGATGTAGAAGGTAT+TGG | 0.381998 | 1.4:+47155011 | MS.gene034747:CDS |
GCATCCCTTGGAAAATCAAA+AGG | 0.439777 | 1.4:-47155751 | None:intergenic |
TGTAGAAGGTATTGGACAAA+AGG | 0.461975 | 1.4:+47155019 | MS.gene034747:CDS |
CTCAGAAATGTTCCTGTTGG+TGG | 0.463083 | 1.4:+47155049 | MS.gene034747:CDS |
GGAGGTTGAGTGACTTGAAA+TGG | 0.465039 | 1.4:-47155667 | None:intergenic |
AATTAGAACTTGGTTTCAAA+GGG | 0.465903 | 1.4:+47155422 | MS.gene034747:CDS |
TTTCTGCAGCCACCACCAAC+AGG | 0.485924 | 1.4:-47155061 | None:intergenic |
AATTTGTCTGAATTAGAACT+TGG | 0.496339 | 1.4:+47155412 | MS.gene034747:CDS |
TCTGCATCATGAATTTGATC+AGG | 0.499238 | 1.4:-47155706 | None:intergenic |
GTGTTTGAAGAACCACATCT+TGG | 0.501582 | 1.4:-47154938 | None:intergenic |
AGAAATGTTCCTGTTGGTGG+TGG | 0.504532 | 1.4:+47155052 | MS.gene034747:CDS |
ATTTGATCAGGACCAAGAAA+TGG | 0.507530 | 1.4:-47155694 | None:intergenic |
GAATCCTCTTCACCTGGTAA+AGG | 0.513411 | 1.4:-47155592 | None:intergenic |
GAATTAGAACTTGGTTTCAA+AGG | 0.520155 | 1.4:+47155421 | MS.gene034747:CDS |
ACTAAAATGTGTTACTGTTG+TGG | 0.520461 | 1.4:-47155476 | None:intergenic |
AGAATCAATTAAGCATCCCT+TGG | 0.523237 | 1.4:-47155763 | None:intergenic |
TTTGAGCTACCACCTTTACC+AGG | 0.542560 | 1.4:+47155580 | MS.gene034747:CDS |
GGACCAAGAAATGGTGGTGG+AGG | 0.554806 | 1.4:-47155685 | None:intergenic |
CATCCCTTGGAAAATCAAAA+GGG | 0.555636 | 1.4:-47155750 | None:intergenic |
ACCACCTTTACCAGGTGAAG+AGG | 0.557951 | 1.4:+47155588 | MS.gene034747:CDS |
TCAAGGCTATCGATTGTTGA+AGG | 0.562523 | 1.4:+47155373 | MS.gene034747:CDS |
TCCTCTTCACCTGGTAAAGG+TGG | 0.570460 | 1.4:-47155589 | None:intergenic |
CACCAACAGGAACATTTCTG+AGG | 0.582266 | 1.4:-47155048 | None:intergenic |
AGAAGGTATTGGACAAAAGG+TGG | 0.588429 | 1.4:+47155022 | MS.gene034747:CDS |
ATGCAGACATGGAGAGTGAG+TGG | 0.591147 | 1.4:+47154888 | None:intergenic |
TCCCTCAGAAATGTTCCTGT+TGG | 0.593993 | 1.4:+47155046 | MS.gene034747:CDS |
GTTGAGTGACTTGAAATGGA+AGG | 0.605356 | 1.4:-47155663 | None:intergenic |
CATCACAAGATCATGTATTG+TGG | 0.612487 | 1.4:+47155617 | MS.gene034747:CDS |
TCAGGACCAAGAAATGGTGG+TGG | 0.616492 | 1.4:-47155688 | None:intergenic |
ACCAACAGGAACATTTCTGA+GGG | 0.622749 | 1.4:-47155047 | None:intergenic |
TCACCAAATTGTCCAAGATG+TGG | 0.624013 | 1.4:+47154926 | MS.gene034747:CDS |
TGATCAGGACCAAGAAATGG+TGG | 0.649067 | 1.4:-47155691 | None:intergenic |
AAATGTGTTACTGTTGTGGA+TGG | 0.658240 | 1.4:-47155472 | None:intergenic |
GATGATGAATCCTCTTCACC+TGG | 0.665791 | 1.4:-47155598 | None:intergenic |
ACTACAGCTTAACTCAACCA+AGG | 0.682302 | 1.4:+47154981 | MS.gene034747:CDS |
AGGCTATCGATTGTTGAAGG+CGG | 0.697199 | 1.4:+47155376 | MS.gene034747:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATCAATTCTATCTTTTTGAA+GGG | - | chr1.4:47155521-47155540 | None:intergenic | 20.0% |
! | AATTAGAACTTGGTTTCAAA+GGG | + | chr1.4:47155422-47155441 | MS.gene034747:CDS | 25.0% |
! | AATTTGTCTGAATTAGAACT+TGG | + | chr1.4:47155412-47155431 | MS.gene034747:CDS | 25.0% |
! | GAAATATTAGTCCTCAAAAT+AGG | - | chr1.4:47155214-47155233 | None:intergenic | 25.0% |
! | GTTAATCATCATTTCAGAAT+TGG | - | chr1.4:47155644-47155663 | None:intergenic | 25.0% |
!! | ATTCTTATGATCCTATTTTG+AGG | + | chr1.4:47155200-47155219 | MS.gene034747:intron | 25.0% |
!! | GATCAATTCTATCTTTTTGA+AGG | - | chr1.4:47155522-47155541 | None:intergenic | 25.0% |
!!! | ATTTGTTTTTCGCATTTGAT+CGG | - | chr1.4:47155332-47155351 | None:intergenic | 25.0% |
ACCAAATATTGATCTTGCAT+TGG | + | chr1.4:47155264-47155283 | MS.gene034747:intron | 30.0% | |
ACCAATGCAAGATCAATATT+TGG | - | chr1.4:47155268-47155287 | None:intergenic | 30.0% | |
ATCCTTGTCTAGAAAATTCA+AGG | + | chr1.4:47155356-47155375 | MS.gene034747:intron | 30.0% | |
GAATTAGAACTTGGTTTCAA+AGG | + | chr1.4:47155421-47155440 | MS.gene034747:CDS | 30.0% | |
! | ACTAAAATGTGTTACTGTTG+TGG | - | chr1.4:47155479-47155498 | None:intergenic | 30.0% |
! | ATTTTTGCAAAGGATGTAGA+AGG | + | chr1.4:47155005-47155024 | MS.gene034747:CDS | 30.0% |
! | TCTAAAGAAGTGTGAGAATT+AGG | - | chr1.4:47155157-47155176 | None:intergenic | 30.0% |
!! | AGGTGAATTTTTGAAAGTGA+GGG | - | chr1.4:47155137-47155156 | None:intergenic | 30.0% |
!! | TAGGTGAATTTTTGAAAGTG+AGG | - | chr1.4:47155138-47155157 | None:intergenic | 30.0% |
ATTTGATCAGGACCAAGAAA+TGG | - | chr1.4:47155697-47155716 | None:intergenic | 35.0% | |
CATCACAAGATCATGTATTG+TGG | + | chr1.4:47155617-47155636 | MS.gene034747:CDS | 35.0% | |
CATCCCTTGGAAAATCAAAA+GGG | - | chr1.4:47155753-47155772 | None:intergenic | 35.0% | |
CATCCTTTGCAAAAATACCT+TGG | - | chr1.4:47155001-47155020 | None:intergenic | 35.0% | |
TCTGCATCATGAATTTGATC+AGG | - | chr1.4:47155709-47155728 | None:intergenic | 35.0% | |
! | AAATGTGTTACTGTTGTGGA+TGG | - | chr1.4:47155475-47155494 | None:intergenic | 35.0% |
! | AGCCTTGAATTTTCTAGACA+AGG | - | chr1.4:47155361-47155380 | None:intergenic | 35.0% |
!! | CAACCAAGGTATTTTTGCAA+AGG | + | chr1.4:47154995-47155014 | MS.gene034747:CDS | 35.0% |
!! | CAGACTTGTTAATCGGTAAT+TGG | + | chr1.4:47155725-47155744 | MS.gene034747:CDS | 35.0% |
!! | CATGATGCAGACTTGTTAAT+CGG | + | chr1.4:47155718-47155737 | MS.gene034747:CDS | 35.0% |
!! | TGTAGAAGGTATTGGACAAA+AGG | + | chr1.4:47155019-47155038 | MS.gene034747:CDS | 35.0% |
ACCAACAGGAACATTTCTGA+GGG | - | chr1.4:47155050-47155069 | None:intergenic | 40.0% | |
ACTACAGCTTAACTCAACCA+AGG | + | chr1.4:47154981-47155000 | MS.gene034747:CDS | 40.0% | |
GAACCACATCTTGGACAATT+TGG | - | chr1.4:47154932-47154951 | None:intergenic | 40.0% | |
GCATCCCTTGGAAAATCAAA+AGG | - | chr1.4:47155754-47155773 | None:intergenic | 40.0% | |
GTGTTTGAAGAACCACATCT+TGG | - | chr1.4:47154941-47154960 | None:intergenic | 40.0% | |
GTTGAGTGACTTGAAATGGA+AGG | - | chr1.4:47155666-47155685 | None:intergenic | 40.0% | |
GTTGTGGATGGTAATTGTTC+TGG | - | chr1.4:47155463-47155482 | None:intergenic | 40.0% | |
TCACCAAATTGTCCAAGATG+TGG | + | chr1.4:47154926-47154945 | MS.gene034747:CDS | 40.0% | |
TGATCGGAACTAAGAGAATC+AGG | - | chr1.4:47155316-47155335 | None:intergenic | 40.0% | |
TGGTCTATCATTCACCAATG+AGG | - | chr1.4:47155248-47155267 | None:intergenic | 40.0% | |
TTTGAAAGTGAGGGAGTCAA+AGG | - | chr1.4:47155128-47155147 | None:intergenic | 40.0% | |
! | GCAAAGGATGTAGAAGGTAT+TGG | + | chr1.4:47155011-47155030 | MS.gene034747:CDS | 40.0% |
! | TCAAGGCTATCGATTGTTGA+AGG | + | chr1.4:47155373-47155392 | MS.gene034747:CDS | 40.0% |
!! | AGAAGGTATTGGACAAAAGG+TGG | + | chr1.4:47155022-47155041 | MS.gene034747:CDS | 40.0% |
!! | GAGAATCAGGCTTTTGATTG+AGG | - | chr1.4:47155303-47155322 | None:intergenic | 40.0% |
!! | TTCATCTTCTAGCTCCTCAT+TGG | + | chr1.4:47155231-47155250 | MS.gene034747:intron | 40.0% |
!!! | GAGCCCTTTTGATTTTCCAA+GGG | + | chr1.4:47155747-47155766 | MS.gene034747:CDS | 40.0% |
CACCAACAGGAACATTTCTG+AGG | - | chr1.4:47155051-47155070 | None:intergenic | 45.0% | |
CTCAGAAATGTTCCTGTTGG+TGG | + | chr1.4:47155049-47155068 | MS.gene034747:CDS | 45.0% | |
GAATCCTCTTCACCTGGTAA+AGG | - | chr1.4:47155595-47155614 | None:intergenic | 45.0% | |
GATGATGAATCCTCTTCACC+TGG | - | chr1.4:47155601-47155620 | None:intergenic | 45.0% | |
GGAGGTTGAGTGACTTGAAA+TGG | - | chr1.4:47155670-47155689 | None:intergenic | 45.0% | |
GGCTGCAGAAAAAACAGAAG+AGG | + | chr1.4:47155073-47155092 | MS.gene034747:CDS | 45.0% | |
TCCCTCAGAAATGTTCCTGT+TGG | + | chr1.4:47155046-47155065 | MS.gene034747:CDS | 45.0% | |
TGATCAGGACCAAGAAATGG+TGG | - | chr1.4:47155694-47155713 | None:intergenic | 45.0% | |
TTTGAGCTACCACCTTTACC+AGG | + | chr1.4:47155580-47155599 | MS.gene034747:CDS | 45.0% | |
! | AGAAATGTTCCTGTTGGTGG+TGG | + | chr1.4:47155052-47155071 | MS.gene034747:CDS | 45.0% |
! | AGGCTATCGATTGTTGAAGG+CGG | + | chr1.4:47155376-47155395 | MS.gene034747:CDS | 45.0% |
!!! | GGAGCCCTTTTGATTTTCCA+AGG | + | chr1.4:47155746-47155765 | MS.gene034747:CDS | 45.0% |
ACCACCTTTACCAGGTGAAG+AGG | + | chr1.4:47155588-47155607 | MS.gene034747:CDS | 50.0% | |
CAACCTCCACCACCATTTCT+TGG | + | chr1.4:47155682-47155701 | MS.gene034747:CDS | 50.0% | |
TCAGGACCAAGAAATGGTGG+TGG | - | chr1.4:47155691-47155710 | None:intergenic | 50.0% | |
TCCTCTTCACCTGGTAAAGG+TGG | - | chr1.4:47155592-47155611 | None:intergenic | 50.0% | |
TTTCTGCAGCCACCACCAAC+AGG | - | chr1.4:47155064-47155083 | None:intergenic | 55.0% | |
!! | GGACCAAGAAATGGTGGTGG+AGG | - | chr1.4:47155688-47155707 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.4 | gene | 47154896 | 47155777 | 47154896 | ID=MS.gene034747 |
chr1.4 | mRNA | 47154896 | 47155777 | 47154896 | ID=MS.gene034747.t1;Parent=MS.gene034747 |
chr1.4 | exon | 47154896 | 47155094 | 47154896 | ID=MS.gene034747.t1.exon1;Parent=MS.gene034747.t1 |
chr1.4 | CDS | 47154896 | 47155094 | 47154896 | ID=cds.MS.gene034747.t1;Parent=MS.gene034747.t1 |
chr1.4 | exon | 47155368 | 47155777 | 47155368 | ID=MS.gene034747.t1.exon2;Parent=MS.gene034747.t1 |
chr1.4 | CDS | 47155368 | 47155777 | 47155368 | ID=cds.MS.gene034747.t1;Parent=MS.gene034747.t1 |
Gene Sequence |
Protein sequence |