Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene034826.t1 | KEH41968.1 | 98.1 | 208 | 4 | 0 | 18 | 225 | 37 | 244 | 2.00E-118 | 435.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene034826.t1 | Q9FNI3 | 71.7 | 127 | 28 | 1 | 50 | 168 | 39 | 165 | 1.1e-45 | 184.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene034826.t1 | A0A072VKM7 | 98.1 | 208 | 4 | 0 | 18 | 225 | 37 | 244 | 1.4e-118 | 435.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene034826.t1 | TF | B3 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene034826.t1 | MTR_1g058350 | 98.222 | 225 | 4 | 0 | 1 | 225 | 20 | 244 | 3.32e-170 | 472 |
MS.gene034826.t1 | MTR_7g105370 | 68.831 | 154 | 38 | 3 | 60 | 213 | 64 | 207 | 6.68e-67 | 209 |
MS.gene034826.t1 | MTR_8g023990 | 70.796 | 113 | 29 | 2 | 52 | 162 | 167 | 277 | 1.84e-48 | 167 |
MS.gene034826.t1 | MTR_5g053920 | 66.087 | 115 | 33 | 1 | 53 | 161 | 191 | 305 | 1.24e-45 | 157 |
MS.gene034826.t1 | MTR_7g117455 | 69.725 | 109 | 29 | 2 | 56 | 162 | 117 | 223 | 1.63e-45 | 158 |
MS.gene034826.t1 | MTR_1g093600 | 61.157 | 121 | 36 | 2 | 53 | 162 | 188 | 308 | 5.91e-41 | 144 |
MS.gene034826.t1 | MTR_1g116920 | 50.467 | 107 | 43 | 2 | 45 | 146 | 145 | 246 | 1.83e-28 | 109 |
MS.gene034826.t1 | MTR_7g073240 | 38.571 | 140 | 64 | 7 | 31 | 162 | 98 | 223 | 3.19e-16 | 77.4 |
MS.gene034826.t1 | MTR_4g028130 | 34.815 | 135 | 68 | 6 | 35 | 162 | 295 | 416 | 3.27e-15 | 75.1 |
MS.gene034826.t1 | MTR_4g028130 | 35.338 | 133 | 66 | 6 | 35 | 160 | 295 | 414 | 3.83e-15 | 75.1 |
MS.gene034826.t1 | MTR_5g075410 | 36.296 | 135 | 65 | 6 | 35 | 162 | 302 | 422 | 4.11e-15 | 74.7 |
MS.gene034826.t1 | MTR_3g467380 | 35.758 | 165 | 81 | 9 | 35 | 188 | 319 | 469 | 1.71e-14 | 73.2 |
MS.gene034826.t1 | MTR_2g011940 | 36.667 | 120 | 62 | 5 | 43 | 160 | 336 | 443 | 2.07e-14 | 72.8 |
MS.gene034826.t1 | MTR_2g011940 | 36.066 | 122 | 64 | 5 | 43 | 162 | 345 | 454 | 3.12e-14 | 72.0 |
MS.gene034826.t1 | MTR_2g011940 | 36.066 | 122 | 64 | 5 | 43 | 162 | 345 | 454 | 3.63e-14 | 72.0 |
MS.gene034826.t1 | MTR_4g028130 | 37.815 | 119 | 55 | 5 | 35 | 146 | 295 | 401 | 3.94e-14 | 72.0 |
MS.gene034826.t1 | MTR_8g101360 | 38.053 | 113 | 64 | 3 | 48 | 160 | 129 | 235 | 1.27e-12 | 67.4 |
MS.gene034826.t1 | MTR_2g094570 | 33.813 | 139 | 84 | 3 | 52 | 185 | 103 | 238 | 4.36e-12 | 65.9 |
MS.gene034826.t1 | MTR_1g094960 | 27.586 | 203 | 125 | 5 | 52 | 235 | 113 | 312 | 5.04e-12 | 65.5 |
MS.gene034826.t1 | MTR_4g058930 | 32.432 | 148 | 83 | 4 | 52 | 194 | 104 | 239 | 5.13e-12 | 65.5 |
MS.gene034826.t1 | MTR_2g094570 | 33.813 | 139 | 84 | 3 | 52 | 185 | 159 | 294 | 5.35e-12 | 65.5 |
MS.gene034826.t1 | MTR_2g094570 | 33.813 | 139 | 84 | 3 | 52 | 185 | 103 | 238 | 5.44e-12 | 65.5 |
MS.gene034826.t1 | MTR_4g058930 | 32.432 | 148 | 83 | 4 | 52 | 194 | 104 | 239 | 5.75e-12 | 65.5 |
MS.gene034826.t1 | MTR_2g093740 | 28.649 | 185 | 126 | 3 | 33 | 217 | 144 | 322 | 7.74e-12 | 65.1 |
MS.gene034826.t1 | MTR_2g093740 | 29.630 | 162 | 108 | 3 | 56 | 217 | 167 | 322 | 8.93e-12 | 65.1 |
MS.gene034826.t1 | MTR_2g093740 | 28.649 | 185 | 126 | 3 | 33 | 217 | 144 | 322 | 9.01e-12 | 65.1 |
MS.gene034826.t1 | MTR_2g093740 | 28.649 | 185 | 126 | 3 | 33 | 217 | 14 | 192 | 9.50e-12 | 64.7 |
MS.gene034826.t1 | MTR_4g060460 | 30.178 | 169 | 112 | 3 | 49 | 217 | 158 | 320 | 9.83e-12 | 64.7 |
MS.gene034826.t1 | MTR_4g060460 | 30.178 | 169 | 112 | 3 | 49 | 217 | 158 | 320 | 1.08e-11 | 64.7 |
MS.gene034826.t1 | MTR_2g093740 | 28.649 | 185 | 126 | 3 | 33 | 217 | 14 | 192 | 1.10e-11 | 64.7 |
MS.gene034826.t1 | MTR_3g073420 | 35.897 | 117 | 69 | 4 | 46 | 160 | 105 | 217 | 1.14e-11 | 64.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene034826.t1 | AT3G11580 | 76.471 | 119 | 19 | 2 | 52 | 161 | 24 | 142 | 2.80e-58 | 185 |
MS.gene034826.t1 | AT3G11580 | 76.471 | 119 | 19 | 2 | 52 | 161 | 24 | 142 | 2.80e-58 | 185 |
MS.gene034826.t1 | AT3G11580 | 76.471 | 119 | 19 | 2 | 52 | 161 | 24 | 142 | 2.80e-58 | 185 |
MS.gene034826.t1 | AT3G11580 | 76.471 | 119 | 19 | 2 | 52 | 161 | 24 | 142 | 7.48e-58 | 185 |
MS.gene034826.t1 | AT5G06250 | 75.000 | 120 | 22 | 1 | 50 | 161 | 39 | 158 | 1.18e-57 | 184 |
MS.gene034826.t1 | AT5G06250 | 75.000 | 120 | 22 | 1 | 50 | 161 | 39 | 158 | 1.42e-57 | 185 |
MS.gene034826.t1 | AT5G06250 | 75.000 | 120 | 22 | 1 | 50 | 161 | 39 | 158 | 1.44e-57 | 185 |
MS.gene034826.t1 | AT5G06250 | 70.000 | 130 | 31 | 1 | 50 | 171 | 39 | 168 | 2.16e-57 | 184 |
MS.gene034826.t1 | AT5G06250 | 70.000 | 130 | 31 | 1 | 50 | 171 | 39 | 168 | 2.87e-57 | 184 |
MS.gene034826.t1 | AT3G11580 | 76.471 | 119 | 19 | 2 | 52 | 161 | 24 | 142 | 8.29e-57 | 186 |
MS.gene034826.t1 | AT2G36080 | 78.571 | 112 | 23 | 1 | 51 | 161 | 32 | 143 | 5.15e-56 | 177 |
MS.gene034826.t1 | AT2G36080 | 78.571 | 112 | 23 | 1 | 51 | 161 | 32 | 143 | 5.15e-56 | 177 |
MS.gene034826.t1 | AT2G36080 | 78.571 | 112 | 23 | 1 | 51 | 161 | 32 | 143 | 1.23e-55 | 179 |
MS.gene034826.t1 | AT2G36080 | 78.571 | 112 | 23 | 1 | 51 | 161 | 32 | 143 | 1.49e-55 | 178 |
MS.gene034826.t1 | AT3G61970 | 68.468 | 111 | 34 | 1 | 52 | 161 | 18 | 128 | 6.95e-50 | 166 |
MS.gene034826.t1 | AT2G46870 | 69.912 | 113 | 29 | 2 | 52 | 161 | 30 | 140 | 5.58e-48 | 161 |
MS.gene034826.t1 | AT1G68840 | 63.934 | 122 | 44 | 0 | 42 | 163 | 173 | 294 | 5.14e-47 | 159 |
MS.gene034826.t1 | AT1G68840 | 63.934 | 122 | 44 | 0 | 42 | 163 | 173 | 294 | 5.14e-47 | 159 |
MS.gene034826.t1 | AT1G13260 | 66.087 | 115 | 38 | 1 | 54 | 168 | 185 | 298 | 1.20e-46 | 158 |
MS.gene034826.t1 | AT3G25730 | 62.097 | 124 | 45 | 2 | 54 | 175 | 180 | 303 | 1.67e-45 | 155 |
MS.gene034826.t1 | AT1G01030 | 62.185 | 119 | 40 | 2 | 46 | 161 | 45 | 161 | 4.32e-45 | 154 |
MS.gene034826.t1 | AT1G01030 | 62.185 | 119 | 40 | 2 | 46 | 161 | 45 | 161 | 6.44e-45 | 154 |
MS.gene034826.t1 | AT1G25560 | 59.375 | 128 | 46 | 1 | 53 | 174 | 191 | 318 | 4.81e-44 | 152 |
MS.gene034826.t1 | AT4G01500 | 53.906 | 128 | 46 | 2 | 44 | 162 | 23 | 146 | 5.80e-38 | 135 |
MS.gene034826.t1 | AT1G50680 | 50.000 | 98 | 40 | 1 | 56 | 144 | 156 | 253 | 6.49e-26 | 103 |
MS.gene034826.t1 | AT1G51120 | 49.474 | 95 | 42 | 1 | 56 | 144 | 177 | 271 | 2.85e-25 | 102 |
MS.gene034826.t1 | AT2G30470 | 35.766 | 137 | 76 | 5 | 56 | 187 | 294 | 423 | 5.94e-15 | 74.3 |
MS.gene034826.t1 | AT4G32010 | 31.944 | 144 | 89 | 5 | 56 | 197 | 281 | 417 | 1.61e-14 | 73.2 |
MS.gene034826.t1 | AT4G32010 | 31.944 | 144 | 89 | 5 | 56 | 197 | 285 | 421 | 1.63e-14 | 73.2 |
MS.gene034826.t1 | AT1G35240 | 33.793 | 145 | 87 | 4 | 41 | 178 | 105 | 247 | 1.20e-12 | 67.4 |
MS.gene034826.t1 | AT1G35520 | 31.707 | 164 | 96 | 5 | 29 | 178 | 86 | 247 | 3.48e-12 | 66.2 |
MS.gene034826.t1 | AT1G77850 | 36.283 | 113 | 65 | 3 | 50 | 160 | 112 | 219 | 3.55e-12 | 66.2 |
MS.gene034826.t1 | AT1G77850 | 36.283 | 113 | 65 | 3 | 50 | 160 | 112 | 219 | 4.49e-12 | 65.9 |
MS.gene034826.t1 | AT1G34310 | 31.944 | 144 | 91 | 3 | 41 | 178 | 105 | 247 | 5.65e-12 | 65.5 |
MS.gene034826.t1 | AT2G33860 | 30.000 | 160 | 106 | 3 | 56 | 215 | 158 | 311 | 3.89e-11 | 63.2 |
MS.gene034826.t1 | AT5G60450 | 31.288 | 163 | 103 | 4 | 56 | 217 | 176 | 330 | 4.32e-11 | 63.2 |
MS.gene034826.t1 | AT5G60450 | 31.288 | 163 | 103 | 4 | 56 | 217 | 152 | 306 | 4.70e-11 | 62.8 |
MS.gene034826.t1 | AT2G33860 | 30.000 | 160 | 106 | 3 | 56 | 215 | 1 | 154 | 5.13e-11 | 62.4 |
Find 51 sgRNAs with CRISPR-Local
Find 70 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TATTAGTCGAACCAACTTCT+TGG | 0.317183 | 1.1:+45279177 | MS.gene034826:CDS |
GGCGTTTCCGTTACTCATAT+TGG | 0.359426 | 1.1:+45279495 | MS.gene034826:CDS |
CCTACGTCAGAAGGTGTTAA+GGG | 0.377142 | 1.1:-45279350 | None:intergenic |
GGTAAGAATGAGGTTGTTAA+TGG | 0.377492 | 1.1:+45279725 | MS.gene034826:CDS |
TCCTACGTCAGAAGGTGTTA+AGG | 0.388480 | 1.1:-45279351 | None:intergenic |
CAAAGCTATGTTCTAACAAA+AGG | 0.431965 | 1.1:+45279527 | MS.gene034826:CDS |
TGATGATGATGCGCAGGATA+AGG | 0.435593 | 1.1:-45279785 | None:intergenic |
AATAAAACCCGAAGACGAAA+AGG | 0.463997 | 1.1:+45279310 | MS.gene034826:CDS |
TCAACTGGAGGAGGAGGAGT+GGG | 0.485693 | 1.1:+45279639 | MS.gene034826:CDS |
AAAGACAAACGACTCGATGC+TGG | 0.489099 | 1.1:+45279566 | MS.gene034826:CDS |
AATGAGGTTGTTAATGGTGT+AGG | 0.496825 | 1.1:+45279731 | MS.gene034826:CDS |
ACCATGGAGGTTGGTGGTGA+TGG | 0.501172 | 1.1:-45279205 | None:intergenic |
ATCAACTGGAGGAGGAGGAG+TGG | 0.505623 | 1.1:+45279638 | MS.gene034826:CDS |
AGCAGAGGGGTGGGACATCA+TGG | 0.518191 | 1.1:+45279683 | MS.gene034826:CDS |
GAGGAGTGGGGATGATCAGT+CGG | 0.525500 | 1.1:+45279652 | MS.gene034826:CDS |
CATCATGGTAAGGGTAGTGA+TGG | 0.527962 | 1.1:+45279698 | MS.gene034826:CDS |
GCTATGTTCTAACAAAAGGT+TGG | 0.532394 | 1.1:+45279531 | MS.gene034826:CDS |
TAGTAAAAGTCCTTTGCACT+CGG | 0.550197 | 1.1:-45279444 | None:intergenic |
ATGGTGTAGGGTGGTCCAGA+GGG | 0.553370 | 1.1:+45279744 | MS.gene034826:CDS |
AAGATGAGTCAGGGAAGTGT+TGG | 0.556819 | 1.1:+45279474 | MS.gene034826:CDS |
AGGGGTGGGACATCATGGTA+AGG | 0.561645 | 1.1:+45279688 | MS.gene034826:CDS |
TCCATCACCACCAACCTCCA+TGG | 0.565376 | 1.1:+45279204 | MS.gene034826:CDS |
AATGGTGTAGGGTGGTCCAG+AGG | 0.566906 | 1.1:+45279743 | MS.gene034826:CDS |
GCGGAGTCTGCTCCGCCGAG+TGG | 0.567487 | 1.1:-45279422 | None:intergenic |
CATGATCAATGTCTTCATGC+AGG | 0.570998 | 1.1:+45279824 | MS.gene034826:CDS |
GCAGACTCCGCCGAGTGCAA+AGG | 0.576404 | 1.1:+45279434 | MS.gene034826:CDS |
TACTGTTCCAATATGAGTAA+CGG | 0.578342 | 1.1:-45279502 | None:intergenic |
ATGCGCAGAATAGAACCCTC+TGG | 0.580439 | 1.1:-45279759 | None:intergenic |
GGCGTATGTTAGCAGAGGGG+TGG | 0.580643 | 1.1:+45279673 | MS.gene034826:CDS |
TGATGGAGAGACCAAGAAGT+TGG | 0.584201 | 1.1:-45279188 | None:intergenic |
GCGTATGTTAGCAGAGGGGT+GGG | 0.587165 | 1.1:+45279674 | MS.gene034826:CDS |
AGACATTGATCATGTTGGTA+TGG | 0.589887 | 1.1:-45279815 | None:intergenic |
ATGAGGTTGTTAATGGTGTA+GGG | 0.597680 | 1.1:+45279732 | MS.gene034826:CDS |
GAGAATTGAACCATGGAGGT+TGG | 0.598304 | 1.1:-45279214 | None:intergenic |
AAGACTTGATGATGATGCGC+AGG | 0.600336 | 1.1:-45279791 | None:intergenic |
TGGATTTGAGAATTGAACCA+TGG | 0.606350 | 1.1:-45279221 | None:intergenic |
TGATGGGAATGGTAAGAATG+AGG | 0.609090 | 1.1:+45279715 | MS.gene034826:CDS |
CATGAAGACATTGATCATGT+TGG | 0.609605 | 1.1:-45279820 | None:intergenic |
AGTCGGCGTATGTTAGCAGA+GGG | 0.627715 | 1.1:+45279669 | MS.gene034826:CDS |
CAGTCGGCGTATGTTAGCAG+AGG | 0.631740 | 1.1:+45279668 | MS.gene034826:CDS |
GGGGTGGGACATCATGGTAA+GGG | 0.638844 | 1.1:+45279689 | MS.gene034826:CDS |
ATCATGGTAAGGGTAGTGAT+GGG | 0.642987 | 1.1:+45279699 | MS.gene034826:CDS |
CCCTTAACACCTTCTGACGT+AGG | 0.645250 | 1.1:+45279350 | MS.gene034826:CDS |
GGTAAGGGTAGTGATGGGAA+TGG | 0.646143 | 1.1:+45279704 | MS.gene034826:CDS |
TAAAAGTCCTTTGCACTCGG+CGG | 0.651002 | 1.1:-45279441 | None:intergenic |
CAACTGGAGGAGGAGGAGTG+GGG | 0.652199 | 1.1:+45279640 | MS.gene034826:CDS |
AATTGAACCATGGAGGTTGG+TGG | 0.658505 | 1.1:-45279211 | None:intergenic |
GTTGGTTCGACTAATAACAT+CGG | 0.683554 | 1.1:-45279170 | None:intergenic |
ATTTGAGAATTGAACCATGG+AGG | 0.715955 | 1.1:-45279218 | None:intergenic |
AGGTTGTTAATGGTGTAGGG+TGG | 0.756848 | 1.1:+45279735 | MS.gene034826:CDS |
GTCGGCGTATGTTAGCAGAG+GGG | 0.766314 | 1.1:+45279670 | MS.gene034826:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTTTTCAGCGTATTGTTTT+GGG | - | chr1.1:45279397-45279416 | None:intergenic | 25.0% |
!!! | TATTTTTCAGCGTATTGTTT+TGG | - | chr1.1:45279398-45279417 | None:intergenic | 25.0% |
CAAAGCTATGTTCTAACAAA+AGG | + | chr1.1:45279527-45279546 | MS.gene034826:CDS | 30.0% | |
TACTGTTCCAATATGAGTAA+CGG | - | chr1.1:45279505-45279524 | None:intergenic | 30.0% | |
!!! | ATGTTTTTGAGGTTGTAATG+AGG | - | chr1.1:45279257-45279276 | None:intergenic | 30.0% |
!!! | ATTGTTTTGGGATAACAAGA+CGG | - | chr1.1:45279385-45279404 | None:intergenic | 30.0% |
!!! | TAAGTTTTGAAGATGAGTCA+GGG | + | chr1.1:45279465-45279484 | MS.gene034826:CDS | 30.0% |
AATAAAACCCGAAGACGAAA+AGG | + | chr1.1:45279310-45279329 | MS.gene034826:CDS | 35.0% | |
AATGAGGTTGTTAATGGTGT+AGG | + | chr1.1:45279731-45279750 | MS.gene034826:CDS | 35.0% | |
AGACATTGATCATGTTGGTA+TGG | - | chr1.1:45279818-45279837 | None:intergenic | 35.0% | |
ATGAGGTTGTTAATGGTGTA+GGG | + | chr1.1:45279732-45279751 | MS.gene034826:CDS | 35.0% | |
ATTTGAGAATTGAACCATGG+AGG | - | chr1.1:45279221-45279240 | None:intergenic | 35.0% | |
CATGAAGACATTGATCATGT+TGG | - | chr1.1:45279823-45279842 | None:intergenic | 35.0% | |
GCTATGTTCTAACAAAAGGT+TGG | + | chr1.1:45279531-45279550 | MS.gene034826:CDS | 35.0% | |
GCTGAAAAATACTTTCCACT+CGG | + | chr1.1:45279407-45279426 | MS.gene034826:CDS | 35.0% | |
GGTAAGAATGAGGTTGTTAA+TGG | + | chr1.1:45279725-45279744 | MS.gene034826:CDS | 35.0% | |
TAGTAAAAGTCCTTTGCACT+CGG | - | chr1.1:45279447-45279466 | None:intergenic | 35.0% | |
TATTAGTCGAACCAACTTCT+TGG | + | chr1.1:45279177-45279196 | MS.gene034826:CDS | 35.0% | |
TGGATTTGAGAATTGAACCA+TGG | - | chr1.1:45279224-45279243 | None:intergenic | 35.0% | |
! | AGAGACTTTTTATCAACTGG+AGG | + | chr1.1:45279627-45279646 | MS.gene034826:CDS | 35.0% |
! | GTCAGAGACTTTTTATCAAC+TGG | + | chr1.1:45279624-45279643 | MS.gene034826:CDS | 35.0% |
! | TGTAATGAGGTGAGTTTTCA+TGG | - | chr1.1:45279244-45279263 | None:intergenic | 35.0% |
!! | ATTGATTCCTTTTCGTCTTC+GGG | - | chr1.1:45279320-45279339 | None:intergenic | 35.0% |
!! | CTTCATCTTCGATGTTTTTG+AGG | - | chr1.1:45279268-45279287 | None:intergenic | 35.0% |
!!! | CATTGATTCCTTTTCGTCTT+CGG | - | chr1.1:45279321-45279340 | None:intergenic | 35.0% |
!!! | CTAAGTTTTGAAGATGAGTC+AGG | + | chr1.1:45279464-45279483 | MS.gene034826:CDS | 35.0% |
!!! | TTCGTCTTCGGGTTTTATTA+CGG | - | chr1.1:45279309-45279328 | None:intergenic | 35.0% |
ATCATGGTAAGGGTAGTGAT+GGG | + | chr1.1:45279699-45279718 | MS.gene034826:CDS | 40.0% | |
CATGATCAATGTCTTCATGC+AGG | + | chr1.1:45279824-45279843 | MS.gene034826:CDS | 40.0% | |
GAAAAATACTTTCCACTCGG+CGG | + | chr1.1:45279410-45279429 | MS.gene034826:CDS | 40.0% | |
TGATGGGAATGGTAAGAATG+AGG | + | chr1.1:45279715-45279734 | MS.gene034826:CDS | 40.0% | |
! | GACTTTTTATCAACTGGAGG+AGG | + | chr1.1:45279630-45279649 | MS.gene034826:CDS | 40.0% |
! | TTGAGTTTTCCTACGTCAGA+AGG | - | chr1.1:45279362-45279381 | None:intergenic | 40.0% |
! | TTTTTATCAACTGGAGGAGG+AGG | + | chr1.1:45279633-45279652 | MS.gene034826:CDS | 40.0% |
AAAGACAAACGACTCGATGC+TGG | + | chr1.1:45279566-45279585 | MS.gene034826:CDS | 45.0% | |
AATTGAACCATGGAGGTTGG+TGG | - | chr1.1:45279214-45279233 | None:intergenic | 45.0% | |
AGGTTGTTAATGGTGTAGGG+TGG | + | chr1.1:45279735-45279754 | MS.gene034826:CDS | 45.0% | |
CATCATGGTAAGGGTAGTGA+TGG | + | chr1.1:45279698-45279717 | MS.gene034826:CDS | 45.0% | |
GAGAATTGAACCATGGAGGT+TGG | - | chr1.1:45279217-45279236 | None:intergenic | 45.0% | |
GGCGTTTCCGTTACTCATAT+TGG | + | chr1.1:45279495-45279514 | MS.gene034826:CDS | 45.0% | |
TAAAAGTCCTTTGCACTCGG+CGG | - | chr1.1:45279444-45279463 | None:intergenic | 45.0% | |
TGATGGAGAGACCAAGAAGT+TGG | - | chr1.1:45279191-45279210 | None:intergenic | 45.0% | |
! | AAGATGAGTCAGGGAAGTGT+TGG | + | chr1.1:45279474-45279493 | MS.gene034826:CDS | 45.0% |
! | TGATGATGATGCGCAGGATA+AGG | - | chr1.1:45279788-45279807 | None:intergenic | 45.0% |
!! | AAGACTTGATGATGATGCGC+AGG | - | chr1.1:45279794-45279813 | None:intergenic | 45.0% |
!! | CCTACGTCAGAAGGTGTTAA+GGG | - | chr1.1:45279353-45279372 | None:intergenic | 45.0% |
!! | TCCTACGTCAGAAGGTGTTA+AGG | - | chr1.1:45279354-45279373 | None:intergenic | 45.0% |
!!! | GTCTTCGGGTTTTATTACGG+TGG | - | chr1.1:45279306-45279325 | None:intergenic | 45.0% |
!!! | TTCGGGTTTTATTACGGTGG+TGG | - | chr1.1:45279303-45279322 | None:intergenic | 45.0% |
AGTCGGCGTATGTTAGCAGA+GGG | + | chr1.1:45279669-45279688 | MS.gene034826:CDS | 50.0% | |
ATGCGCAGAATAGAACCCTC+TGG | - | chr1.1:45279762-45279781 | None:intergenic | 50.0% | |
CCCTTAACACCTTCTGACGT+AGG | + | chr1.1:45279350-45279369 | MS.gene034826:CDS | 50.0% | |
! | GGTAAGGGTAGTGATGGGAA+TGG | + | chr1.1:45279704-45279723 | MS.gene034826:CDS | 50.0% |
AATGGTGTAGGGTGGTCCAG+AGG | + | chr1.1:45279743-45279762 | MS.gene034826:CDS | 55.0% | |
AGGGGTGGGACATCATGGTA+AGG | + | chr1.1:45279688-45279707 | MS.gene034826:CDS | 55.0% | |
ATCAACTGGAGGAGGAGGAG+TGG | + | chr1.1:45279638-45279657 | MS.gene034826:CDS | 55.0% | |
ATGGTGTAGGGTGGTCCAGA+GGG | + | chr1.1:45279744-45279763 | MS.gene034826:CDS | 55.0% | |
CAGTCGGCGTATGTTAGCAG+AGG | + | chr1.1:45279668-45279687 | MS.gene034826:CDS | 55.0% | |
GAGGAGTGGGGATGATCAGT+CGG | + | chr1.1:45279652-45279671 | MS.gene034826:CDS | 55.0% | |
GCGTATGTTAGCAGAGGGGT+GGG | + | chr1.1:45279674-45279693 | MS.gene034826:CDS | 55.0% | |
GGGGTGGGACATCATGGTAA+GGG | + | chr1.1:45279689-45279708 | MS.gene034826:CDS | 55.0% | |
GTCGGCGTATGTTAGCAGAG+GGG | + | chr1.1:45279670-45279689 | MS.gene034826:CDS | 55.0% | |
TCAACTGGAGGAGGAGGAGT+GGG | + | chr1.1:45279639-45279658 | MS.gene034826:CDS | 55.0% | |
TCCATCACCACCAACCTCCA+TGG | + | chr1.1:45279204-45279223 | MS.gene034826:CDS | 55.0% | |
!! | ACCATGGAGGTTGGTGGTGA+TGG | - | chr1.1:45279208-45279227 | None:intergenic | 55.0% |
AGCAGAGGGGTGGGACATCA+TGG | + | chr1.1:45279683-45279702 | MS.gene034826:CDS | 60.0% | |
CAACTGGAGGAGGAGGAGTG+GGG | + | chr1.1:45279640-45279659 | MS.gene034826:CDS | 60.0% | |
GGCGTATGTTAGCAGAGGGG+TGG | + | chr1.1:45279673-45279692 | MS.gene034826:CDS | 60.0% | |
GCAGACTCCGCCGAGTGCAA+AGG | + | chr1.1:45279434-45279453 | MS.gene034826:CDS | 65.0% | |
GCGGAGTCTGCTCCGCCGAG+TGG | - | chr1.1:45279425-45279444 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 45279173 | 45279919 | 45279173 | ID=MS.gene034826 |
chr1.1 | mRNA | 45279173 | 45279919 | 45279173 | ID=MS.gene034826.t1;Parent=MS.gene034826 |
chr1.1 | exon | 45279173 | 45279919 | 45279173 | ID=MS.gene034826.t1.exon1;Parent=MS.gene034826.t1 |
chr1.1 | CDS | 45279173 | 45279919 | 45279173 | ID=cds.MS.gene034826.t1;Parent=MS.gene034826.t1 |
Gene Sequence |
Protein sequence |