Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene034827.t1 | KEH41968.1 | 90.3 | 207 | 10 | 1 | 18 | 214 | 37 | 243 | 1.40E-104 | 389 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene034827.t1 | Q8RYD3 | 64.3 | 129 | 27 | 1 | 52 | 161 | 24 | 152 | 7.8e-40 | 165.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene034827.t1 | A0A072VKM7 | 90.3 | 207 | 10 | 1 | 18 | 214 | 37 | 243 | 1.0e-104 | 389.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene034827.t1 | TF | B3 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene034827.t1 | MTR_1g058350 | 91.071 | 224 | 10 | 1 | 1 | 214 | 20 | 243 | 1.89e-151 | 423 |
MS.gene034827.t1 | MTR_7g105370 | 63.087 | 149 | 41 | 3 | 60 | 201 | 64 | 205 | 9.90e-57 | 182 |
MS.gene034827.t1 | MTR_8g023990 | 64.865 | 111 | 29 | 2 | 52 | 152 | 167 | 277 | 2.28e-41 | 147 |
MS.gene034827.t1 | MTR_7g117455 | 63.551 | 107 | 29 | 2 | 56 | 152 | 117 | 223 | 9.72e-39 | 139 |
MS.gene034827.t1 | MTR_5g053920 | 57.391 | 115 | 33 | 2 | 53 | 151 | 191 | 305 | 5.11e-37 | 133 |
MS.gene034827.t1 | MTR_1g093600 | 54.545 | 121 | 34 | 2 | 53 | 152 | 188 | 308 | 3.98e-33 | 122 |
MS.gene034827.t1 | MTR_1g116920 | 50.980 | 102 | 40 | 2 | 45 | 136 | 145 | 246 | 1.24e-26 | 103 |
MS.gene034827.t1 | MTR_7g073240 | 36.170 | 141 | 56 | 8 | 31 | 152 | 98 | 223 | 8.71e-13 | 66.6 |
MS.gene034827.t1 | MTR_5g075410 | 35.878 | 131 | 61 | 7 | 35 | 152 | 302 | 422 | 1.17e-12 | 66.6 |
MS.gene034827.t1 | MTR_2g093740 | 30.435 | 161 | 98 | 4 | 56 | 207 | 167 | 322 | 1.39e-12 | 66.6 |
MS.gene034827.t1 | MTR_2g093740 | 30.435 | 161 | 98 | 4 | 56 | 207 | 167 | 322 | 1.47e-12 | 66.2 |
MS.gene034827.t1 | MTR_4g028130 | 34.109 | 129 | 63 | 6 | 35 | 150 | 295 | 414 | 1.51e-12 | 66.2 |
MS.gene034827.t1 | MTR_2g093740 | 30.435 | 161 | 98 | 4 | 56 | 207 | 37 | 192 | 1.55e-12 | 66.2 |
MS.gene034827.t1 | MTR_4g028130 | 34.109 | 129 | 63 | 6 | 35 | 150 | 295 | 414 | 1.59e-12 | 66.2 |
MS.gene034827.t1 | MTR_2g093740 | 30.435 | 161 | 98 | 4 | 56 | 207 | 167 | 322 | 1.62e-12 | 66.2 |
MS.gene034827.t1 | MTR_8g101360 | 37.500 | 112 | 56 | 4 | 48 | 150 | 129 | 235 | 1.62e-12 | 66.2 |
MS.gene034827.t1 | MTR_4g028130 | 33.588 | 131 | 65 | 6 | 35 | 152 | 295 | 416 | 1.78e-12 | 66.2 |
MS.gene034827.t1 | MTR_2g093740 | 30.435 | 161 | 98 | 4 | 56 | 207 | 37 | 192 | 1.83e-12 | 66.2 |
MS.gene034827.t1 | MTR_2g014770 | 34.559 | 136 | 76 | 4 | 20 | 146 | 125 | 256 | 2.06e-12 | 65.9 |
MS.gene034827.t1 | MTR_2g014770 | 34.559 | 136 | 76 | 4 | 20 | 146 | 125 | 256 | 2.22e-12 | 65.9 |
MS.gene034827.t1 | MTR_3g467380 | 35.404 | 161 | 77 | 10 | 35 | 178 | 319 | 469 | 2.41e-12 | 65.9 |
MS.gene034827.t1 | MTR_4g058930 | 31.973 | 147 | 75 | 5 | 52 | 184 | 104 | 239 | 2.55e-12 | 65.9 |
MS.gene034827.t1 | MTR_4g058930 | 31.973 | 147 | 75 | 5 | 52 | 184 | 104 | 239 | 2.70e-12 | 65.5 |
MS.gene034827.t1 | MTR_2g011940 | 35.345 | 116 | 59 | 5 | 43 | 150 | 336 | 443 | 3.63e-12 | 65.5 |
MS.gene034827.t1 | MTR_4g060460 | 30.952 | 168 | 102 | 4 | 49 | 207 | 158 | 320 | 5.53e-12 | 64.7 |
MS.gene034827.t1 | MTR_4g060460 | 30.952 | 168 | 102 | 4 | 49 | 207 | 158 | 320 | 5.75e-12 | 64.7 |
MS.gene034827.t1 | MTR_2g011940 | 34.746 | 118 | 61 | 5 | 43 | 152 | 345 | 454 | 5.90e-12 | 64.7 |
MS.gene034827.t1 | MTR_2g011940 | 34.746 | 118 | 61 | 5 | 43 | 152 | 345 | 454 | 6.50e-12 | 64.3 |
MS.gene034827.t1 | MTR_2g094570 | 32.609 | 138 | 77 | 4 | 52 | 175 | 103 | 238 | 6.75e-12 | 64.3 |
MS.gene034827.t1 | MTR_2g094570 | 32.609 | 138 | 77 | 4 | 52 | 175 | 103 | 238 | 6.79e-12 | 64.3 |
MS.gene034827.t1 | MTR_2g094570 | 32.609 | 138 | 77 | 4 | 52 | 175 | 159 | 294 | 7.14e-12 | 64.3 |
MS.gene034827.t1 | MTR_1g094960 | 30.137 | 146 | 74 | 5 | 52 | 187 | 113 | 240 | 1.34e-11 | 63.5 |
MS.gene034827.t1 | MTR_3g073420 | 34.783 | 115 | 63 | 4 | 46 | 150 | 105 | 217 | 3.66e-11 | 62.4 |
MS.gene034827.t1 | MTR_2g043250 | 32.540 | 126 | 74 | 3 | 36 | 152 | 105 | 228 | 4.41e-11 | 62.0 |
MS.gene034827.t1 | MTR_2g093740 | 28.161 | 174 | 98 | 4 | 56 | 207 | 167 | 335 | 6.11e-11 | 61.6 |
MS.gene034827.t1 | MTR_2g093740 | 28.161 | 174 | 98 | 4 | 56 | 207 | 167 | 335 | 6.32e-11 | 61.6 |
MS.gene034827.t1 | MTR_2g093740 | 28.161 | 174 | 98 | 4 | 56 | 207 | 167 | 335 | 7.62e-11 | 61.2 |
MS.gene034827.t1 | MTR_2g093740 | 28.161 | 174 | 98 | 4 | 56 | 207 | 37 | 205 | 7.81e-11 | 61.2 |
MS.gene034827.t1 | MTR_3g064050 | 30.345 | 145 | 72 | 5 | 16 | 134 | 75 | 216 | 8.00e-11 | 61.2 |
MS.gene034827.t1 | MTR_8g079492 | 30.061 | 163 | 83 | 6 | 16 | 152 | 71 | 228 | 8.19e-11 | 61.2 |
MS.gene034827.t1 | MTR_8g079492 | 30.061 | 163 | 83 | 6 | 16 | 152 | 71 | 228 | 8.19e-11 | 61.2 |
MS.gene034827.t1 | MTR_2g093740 | 28.161 | 174 | 98 | 4 | 56 | 207 | 37 | 205 | 8.54e-11 | 61.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene034827.t1 | AT3G11580 | 68.067 | 119 | 19 | 2 | 52 | 151 | 24 | 142 | 4.02e-50 | 162 |
MS.gene034827.t1 | AT3G11580 | 68.067 | 119 | 19 | 2 | 52 | 151 | 24 | 142 | 4.02e-50 | 162 |
MS.gene034827.t1 | AT3G11580 | 68.067 | 119 | 19 | 2 | 52 | 151 | 24 | 142 | 4.02e-50 | 162 |
MS.gene034827.t1 | AT5G06250 | 67.500 | 120 | 21 | 1 | 50 | 151 | 39 | 158 | 5.44e-50 | 164 |
MS.gene034827.t1 | AT5G06250 | 63.077 | 130 | 30 | 1 | 50 | 161 | 39 | 168 | 6.32e-50 | 164 |
MS.gene034827.t1 | AT5G06250 | 63.077 | 130 | 30 | 1 | 50 | 161 | 39 | 168 | 7.85e-50 | 163 |
MS.gene034827.t1 | AT5G06250 | 63.077 | 130 | 30 | 1 | 50 | 161 | 39 | 168 | 8.55e-50 | 164 |
MS.gene034827.t1 | AT5G06250 | 63.077 | 130 | 30 | 1 | 50 | 161 | 39 | 168 | 1.12e-49 | 163 |
MS.gene034827.t1 | AT3G11580 | 68.067 | 119 | 19 | 2 | 52 | 151 | 24 | 142 | 2.44e-49 | 162 |
MS.gene034827.t1 | AT2G36080 | 70.536 | 112 | 22 | 1 | 51 | 151 | 32 | 143 | 9.80e-49 | 157 |
MS.gene034827.t1 | AT2G36080 | 70.536 | 112 | 22 | 1 | 51 | 151 | 32 | 143 | 9.80e-49 | 157 |
MS.gene034827.t1 | AT3G11580 | 68.067 | 119 | 19 | 2 | 52 | 151 | 24 | 142 | 1.49e-48 | 163 |
MS.gene034827.t1 | AT2G36080 | 70.536 | 112 | 22 | 1 | 51 | 151 | 32 | 143 | 4.14e-48 | 158 |
MS.gene034827.t1 | AT2G36080 | 70.536 | 112 | 22 | 1 | 51 | 151 | 32 | 143 | 4.41e-48 | 157 |
MS.gene034827.t1 | AT3G61970 | 62.162 | 111 | 31 | 1 | 52 | 151 | 18 | 128 | 8.26e-43 | 146 |
MS.gene034827.t1 | AT2G46870 | 63.717 | 113 | 26 | 3 | 52 | 151 | 30 | 140 | 4.30e-41 | 142 |
MS.gene034827.t1 | AT1G68840 | 59.016 | 122 | 40 | 1 | 42 | 153 | 173 | 294 | 6.74e-40 | 140 |
MS.gene034827.t1 | AT1G68840 | 59.016 | 122 | 40 | 1 | 42 | 153 | 173 | 294 | 6.74e-40 | 140 |
MS.gene034827.t1 | AT1G01030 | 59.829 | 117 | 36 | 2 | 46 | 151 | 45 | 161 | 7.51e-40 | 139 |
MS.gene034827.t1 | AT1G01030 | 59.829 | 117 | 36 | 2 | 46 | 151 | 45 | 161 | 1.41e-39 | 139 |
MS.gene034827.t1 | AT1G13260 | 60.526 | 114 | 36 | 1 | 54 | 158 | 185 | 298 | 2.17e-39 | 138 |
MS.gene034827.t1 | AT1G25560 | 55.469 | 128 | 41 | 1 | 53 | 164 | 191 | 318 | 3.14e-38 | 135 |
MS.gene034827.t1 | AT3G25730 | 56.452 | 124 | 42 | 3 | 54 | 165 | 180 | 303 | 2.71e-37 | 132 |
MS.gene034827.t1 | AT4G01500 | 52.419 | 124 | 44 | 2 | 44 | 152 | 23 | 146 | 6.52e-34 | 124 |
MS.gene034827.t1 | AT1G50680 | 46.939 | 98 | 33 | 2 | 56 | 134 | 156 | 253 | 4.88e-22 | 92.4 |
MS.gene034827.t1 | AT1G51120 | 46.316 | 95 | 35 | 1 | 56 | 134 | 177 | 271 | 1.14e-21 | 91.7 |
MS.gene034827.t1 | AT2G30470 | 35.338 | 133 | 72 | 5 | 56 | 177 | 294 | 423 | 1.30e-13 | 69.7 |
MS.gene034827.t1 | AT1G77850 | 35.455 | 110 | 60 | 3 | 50 | 150 | 112 | 219 | 5.64e-13 | 67.8 |
MS.gene034827.t1 | AT1G77850 | 35.455 | 110 | 60 | 3 | 50 | 150 | 112 | 219 | 5.99e-13 | 67.4 |
MS.gene034827.t1 | AT4G21550 | 38.596 | 114 | 51 | 6 | 56 | 158 | 327 | 432 | 1.53e-12 | 66.2 |
MS.gene034827.t1 | AT4G21550 | 38.596 | 114 | 51 | 6 | 56 | 158 | 327 | 432 | 2.08e-12 | 65.9 |
MS.gene034827.t1 | AT1G35240 | 32.168 | 143 | 82 | 4 | 41 | 168 | 105 | 247 | 2.63e-12 | 65.5 |
MS.gene034827.t1 | AT4G21550 | 38.596 | 114 | 51 | 6 | 56 | 158 | 327 | 432 | 2.88e-12 | 65.5 |
MS.gene034827.t1 | AT1G35520 | 31.469 | 143 | 83 | 4 | 41 | 168 | 105 | 247 | 3.12e-12 | 65.5 |
MS.gene034827.t1 | AT1G34310 | 31.469 | 143 | 83 | 4 | 41 | 168 | 105 | 247 | 4.47e-12 | 65.1 |
MS.gene034827.t1 | AT5G37020 | 30.000 | 160 | 81 | 6 | 16 | 149 | 71 | 225 | 5.99e-12 | 64.7 |
MS.gene034827.t1 | AT5G37020 | 30.000 | 160 | 81 | 6 | 16 | 149 | 71 | 225 | 6.28e-12 | 64.7 |
MS.gene034827.t1 | AT2G33860 | 29.560 | 159 | 98 | 3 | 56 | 205 | 158 | 311 | 6.44e-12 | 64.3 |
MS.gene034827.t1 | AT2G33860 | 29.560 | 159 | 98 | 3 | 56 | 205 | 1 | 154 | 8.51e-12 | 63.9 |
MS.gene034827.t1 | AT4G32010 | 32.143 | 140 | 84 | 6 | 56 | 187 | 281 | 417 | 1.35e-11 | 63.5 |
MS.gene034827.t1 | AT4G32010 | 32.143 | 140 | 84 | 6 | 56 | 187 | 285 | 421 | 1.46e-11 | 63.5 |
MS.gene034827.t1 | AT5G60450 | 32.298 | 161 | 94 | 5 | 56 | 207 | 152 | 306 | 1.49e-11 | 63.5 |
MS.gene034827.t1 | AT5G60450 | 32.298 | 161 | 94 | 5 | 56 | 207 | 176 | 330 | 1.57e-11 | 63.5 |
MS.gene034827.t1 | AT1G34410 | 30.070 | 143 | 85 | 3 | 41 | 168 | 105 | 247 | 3.48e-11 | 62.4 |
Find 48 sgRNAs with CRISPR-Local
Find 68 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TATTAGTCGAACCAACTTCT+TGG | 0.317183 | 1.3:-43050732 | MS.gene034827:CDS |
GGCGTTTCCGTTACTCATAT+TGG | 0.359426 | 1.3:-43050415 | MS.gene034827:CDS |
CCTACGTCAGAAGGTGTTAA+GGG | 0.377142 | 1.3:+43050559 | None:intergenic |
GGTAAGAATGAGGTTGTTAA+TGG | 0.377492 | 1.3:-43050185 | MS.gene034827:CDS |
TCCTACGTCAGAAGGTGTTA+AGG | 0.388480 | 1.3:+43050558 | None:intergenic |
CAAAGCTATGTTCTAACAAA+AGG | 0.431965 | 1.3:-43050383 | MS.gene034827:CDS |
TGATGATGATGCGCAGGATA+AGG | 0.435593 | 1.3:+43050125 | None:intergenic |
AATAAAACCCGAAGACGAAA+AGG | 0.463997 | 1.3:-43050599 | MS.gene034827:CDS |
TCAACTGGAGGAGGAGGAGT+GGG | 0.485693 | 1.3:-43050271 | MS.gene034827:CDS |
AAAGACAAACGACTCGATGC+TGG | 0.489099 | 1.3:-43050344 | MS.gene034827:CDS |
AATGAGGTTGTTAATGGTGT+AGG | 0.496825 | 1.3:-43050179 | MS.gene034827:CDS |
ACCATGGAGGTTGGTGGTGA+TGG | 0.501172 | 1.3:+43050704 | None:intergenic |
ATCAACTGGAGGAGGAGGAG+TGG | 0.505623 | 1.3:-43050272 | MS.gene034827:CDS |
AGCAGAGGGGTGGGACATCA+TGG | 0.518191 | 1.3:-43050227 | MS.gene034827:CDS |
GAGGAGTGGGGATGATCAGT+CGG | 0.525500 | 1.3:-43050258 | MS.gene034827:CDS |
CATCATGGTAAGGGTAGTGA+TGG | 0.527962 | 1.3:-43050212 | MS.gene034827:CDS |
GCTATGTTCTAACAAAAGGT+TGG | 0.532394 | 1.3:-43050379 | MS.gene034827:CDS |
ATGGTGTAGGGTGGTCCAGA+GGG | 0.553370 | 1.3:-43050166 | MS.gene034827:CDS |
AAGATGAGTCAGGGAAGTGT+TGG | 0.556819 | 1.3:-43050436 | MS.gene034827:CDS |
AGGGGTGGGACATCATGGTA+AGG | 0.561645 | 1.3:-43050222 | MS.gene034827:CDS |
TCCATCACCACCAACCTCCA+TGG | 0.565376 | 1.3:-43050705 | MS.gene034827:CDS |
AATGGTGTAGGGTGGTCCAG+AGG | 0.566906 | 1.3:-43050167 | MS.gene034827:CDS |
CATGATCAATGTCTTCATGC+AGG | 0.570998 | 1.3:-43050086 | None:intergenic |
TACTGTTCCAATATGAGTAA+CGG | 0.578342 | 1.3:+43050408 | None:intergenic |
ATGCGCAGAATAGAACCCTC+TGG | 0.580439 | 1.3:+43050151 | None:intergenic |
GGCGTATGTTAGCAGAGGGG+TGG | 0.580643 | 1.3:-43050237 | MS.gene034827:CDS |
TGATGGAGAGACCAAGAAGT+TGG | 0.584201 | 1.3:+43050721 | None:intergenic |
GCGTATGTTAGCAGAGGGGT+GGG | 0.587165 | 1.3:-43050236 | MS.gene034827:CDS |
AGACATTGATCATGTTGGTA+TGG | 0.589887 | 1.3:+43050095 | None:intergenic |
ATGAGGTTGTTAATGGTGTA+GGG | 0.597680 | 1.3:-43050178 | MS.gene034827:CDS |
GAGAATTGAACCATGGAGGT+TGG | 0.598304 | 1.3:+43050695 | None:intergenic |
AAGACTTGATGATGATGCGC+AGG | 0.600336 | 1.3:+43050119 | None:intergenic |
TGGATTTGAGAATTGAACCA+TGG | 0.606350 | 1.3:+43050688 | None:intergenic |
GGCGGAGTCTGCTCGCCGAG+TGG | 0.607862 | 1.3:+43050487 | None:intergenic |
TGATGGGAATGGTAAGAATG+AGG | 0.609090 | 1.3:-43050195 | MS.gene034827:CDS |
CATGAAGACATTGATCATGT+TGG | 0.609605 | 1.3:+43050090 | None:intergenic |
AGTCGGCGTATGTTAGCAGA+GGG | 0.627715 | 1.3:-43050241 | MS.gene034827:CDS |
CAGTCGGCGTATGTTAGCAG+AGG | 0.631740 | 1.3:-43050242 | MS.gene034827:CDS |
GGGGTGGGACATCATGGTAA+GGG | 0.638844 | 1.3:-43050221 | MS.gene034827:CDS |
ATCATGGTAAGGGTAGTGAT+GGG | 0.642987 | 1.3:-43050211 | MS.gene034827:CDS |
CCCTTAACACCTTCTGACGT+AGG | 0.645250 | 1.3:-43050559 | MS.gene034827:CDS |
GGTAAGGGTAGTGATGGGAA+TGG | 0.646143 | 1.3:-43050206 | MS.gene034827:CDS |
CAACTGGAGGAGGAGGAGTG+GGG | 0.652199 | 1.3:-43050270 | MS.gene034827:CDS |
AATTGAACCATGGAGGTTGG+TGG | 0.658505 | 1.3:+43050698 | None:intergenic |
GTTGGTTCGACTAATAACAT+CGG | 0.683554 | 1.3:+43050739 | None:intergenic |
ATTTGAGAATTGAACCATGG+AGG | 0.715955 | 1.3:+43050691 | None:intergenic |
AGGTTGTTAATGGTGTAGGG+TGG | 0.756848 | 1.3:-43050175 | MS.gene034827:CDS |
GTCGGCGTATGTTAGCAGAG+GGG | 0.766314 | 1.3:-43050240 | MS.gene034827:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTTTTCAGCGTATTGTTTT+GGG | + | chr1.3:43050311-43050330 | None:intergenic | 25.0% |
!!! | TATTTTTCAGCGTATTGTTT+TGG | + | chr1.3:43050312-43050331 | None:intergenic | 25.0% |
CAAAGCTATGTTCTAACAAA+AGG | - | chr1.3:43050440-43050459 | MS.gene034827:intron | 30.0% | |
TACTGTTCCAATATGAGTAA+CGG | + | chr1.3:43050418-43050437 | None:intergenic | 30.0% | |
!!! | ATGTTTTTGAGGTTGTAATG+AGG | + | chr1.3:43050171-43050190 | None:intergenic | 30.0% |
!!! | ATTGTTTTGGGATAACAAGA+CGG | + | chr1.3:43050299-43050318 | None:intergenic | 30.0% |
!!! | TAAGTTTTGAAGATGAGTCA+GGG | - | chr1.3:43050378-43050397 | MS.gene034827:CDS | 30.0% |
AATAAAACCCGAAGACGAAA+AGG | - | chr1.3:43050224-43050243 | MS.gene034827:CDS | 35.0% | |
AATGAGGTTGTTAATGGTGT+AGG | - | chr1.3:43050644-43050663 | MS.gene034827:CDS | 35.0% | |
AGACATTGATCATGTTGGTA+TGG | + | chr1.3:43050731-43050750 | None:intergenic | 35.0% | |
ATGAGGTTGTTAATGGTGTA+GGG | - | chr1.3:43050645-43050664 | MS.gene034827:CDS | 35.0% | |
ATTTGAGAATTGAACCATGG+AGG | + | chr1.3:43050135-43050154 | None:intergenic | 35.0% | |
CATGAAGACATTGATCATGT+TGG | + | chr1.3:43050736-43050755 | None:intergenic | 35.0% | |
GCTATGTTCTAACAAAAGGT+TGG | - | chr1.3:43050444-43050463 | MS.gene034827:intron | 35.0% | |
GCTGAAAAATACTTTCCACT+CGG | - | chr1.3:43050321-43050340 | MS.gene034827:CDS | 35.0% | |
GGTAAGAATGAGGTTGTTAA+TGG | - | chr1.3:43050638-43050657 | MS.gene034827:CDS | 35.0% | |
TAGTAAAAGTCCTTTGCACT+CGG | + | chr1.3:43050360-43050379 | None:intergenic | 35.0% | |
TATTAGTCGAACCAACTTCT+TGG | - | chr1.3:43050091-43050110 | MS.gene034827:CDS | 35.0% | |
TGGATTTGAGAATTGAACCA+TGG | + | chr1.3:43050138-43050157 | None:intergenic | 35.0% | |
! | AGAGACTTTTTATCAACTGG+AGG | - | chr1.3:43050540-43050559 | MS.gene034827:CDS | 35.0% |
! | GTCAGAGACTTTTTATCAAC+TGG | - | chr1.3:43050537-43050556 | MS.gene034827:CDS | 35.0% |
! | TGTAATGAGGTGAGTTTTCA+TGG | + | chr1.3:43050158-43050177 | None:intergenic | 35.0% |
!! | ATTGATTCCTTTTCGTCTTC+GGG | + | chr1.3:43050234-43050253 | None:intergenic | 35.0% |
!! | CTTCATCTTCGATGTTTTTG+AGG | + | chr1.3:43050182-43050201 | None:intergenic | 35.0% |
!!! | CATTGATTCCTTTTCGTCTT+CGG | + | chr1.3:43050235-43050254 | None:intergenic | 35.0% |
!!! | CTAAGTTTTGAAGATGAGTC+AGG | - | chr1.3:43050377-43050396 | MS.gene034827:CDS | 35.0% |
!!! | TTCGTCTTCGGGTTTTATTA+CGG | + | chr1.3:43050223-43050242 | None:intergenic | 35.0% |
ATCATGGTAAGGGTAGTGAT+GGG | - | chr1.3:43050612-43050631 | MS.gene034827:CDS | 40.0% | |
TGATGGGAATGGTAAGAATG+AGG | - | chr1.3:43050628-43050647 | MS.gene034827:CDS | 40.0% | |
! | GACTTTTTATCAACTGGAGG+AGG | - | chr1.3:43050543-43050562 | MS.gene034827:CDS | 40.0% |
! | TTGAGTTTTCCTACGTCAGA+AGG | + | chr1.3:43050276-43050295 | None:intergenic | 40.0% |
! | TTTTTATCAACTGGAGGAGG+AGG | - | chr1.3:43050546-43050565 | MS.gene034827:CDS | 40.0% |
AAAGACAAACGACTCGATGC+TGG | - | chr1.3:43050479-43050498 | MS.gene034827:intron | 45.0% | |
AATTGAACCATGGAGGTTGG+TGG | + | chr1.3:43050128-43050147 | None:intergenic | 45.0% | |
AGGTTGTTAATGGTGTAGGG+TGG | - | chr1.3:43050648-43050667 | MS.gene034827:CDS | 45.0% | |
CATCATGGTAAGGGTAGTGA+TGG | - | chr1.3:43050611-43050630 | MS.gene034827:CDS | 45.0% | |
GAGAATTGAACCATGGAGGT+TGG | + | chr1.3:43050131-43050150 | None:intergenic | 45.0% | |
GGCGTTTCCGTTACTCATAT+TGG | - | chr1.3:43050408-43050427 | MS.gene034827:CDS | 45.0% | |
TAAAAGTCCTTTGCACTCGG+CGG | + | chr1.3:43050357-43050376 | None:intergenic | 45.0% | |
TGATGGAGAGACCAAGAAGT+TGG | + | chr1.3:43050105-43050124 | None:intergenic | 45.0% | |
! | AAGATGAGTCAGGGAAGTGT+TGG | - | chr1.3:43050387-43050406 | MS.gene034827:CDS | 45.0% |
! | TGATGATGATGCGCAGGATA+AGG | + | chr1.3:43050701-43050720 | None:intergenic | 45.0% |
!! | AAGACTTGATGATGATGCGC+AGG | + | chr1.3:43050707-43050726 | None:intergenic | 45.0% |
!! | CCTACGTCAGAAGGTGTTAA+GGG | + | chr1.3:43050267-43050286 | None:intergenic | 45.0% |
!! | TCCTACGTCAGAAGGTGTTA+AGG | + | chr1.3:43050268-43050287 | None:intergenic | 45.0% |
!!! | GTCTTCGGGTTTTATTACGG+TGG | + | chr1.3:43050220-43050239 | None:intergenic | 45.0% |
!!! | TTCGGGTTTTATTACGGTGG+TGG | + | chr1.3:43050217-43050236 | None:intergenic | 45.0% |
AGTCGGCGTATGTTAGCAGA+GGG | - | chr1.3:43050582-43050601 | MS.gene034827:CDS | 50.0% | |
ATGCGCAGAATAGAACCCTC+TGG | + | chr1.3:43050675-43050694 | None:intergenic | 50.0% | |
CCCTTAACACCTTCTGACGT+AGG | - | chr1.3:43050264-43050283 | MS.gene034827:CDS | 50.0% | |
! | GGTAAGGGTAGTGATGGGAA+TGG | - | chr1.3:43050617-43050636 | MS.gene034827:CDS | 50.0% |
AATGGTGTAGGGTGGTCCAG+AGG | - | chr1.3:43050656-43050675 | MS.gene034827:CDS | 55.0% | |
AGGGGTGGGACATCATGGTA+AGG | - | chr1.3:43050601-43050620 | MS.gene034827:CDS | 55.0% | |
ATCAACTGGAGGAGGAGGAG+TGG | - | chr1.3:43050551-43050570 | MS.gene034827:CDS | 55.0% | |
ATGGTGTAGGGTGGTCCAGA+GGG | - | chr1.3:43050657-43050676 | MS.gene034827:CDS | 55.0% | |
CAGTCGGCGTATGTTAGCAG+AGG | - | chr1.3:43050581-43050600 | MS.gene034827:CDS | 55.0% | |
GAGGAGTGGGGATGATCAGT+CGG | - | chr1.3:43050565-43050584 | MS.gene034827:CDS | 55.0% | |
GCGTATGTTAGCAGAGGGGT+GGG | - | chr1.3:43050587-43050606 | MS.gene034827:CDS | 55.0% | |
GGGGTGGGACATCATGGTAA+GGG | - | chr1.3:43050602-43050621 | MS.gene034827:CDS | 55.0% | |
GTCGGCGTATGTTAGCAGAG+GGG | - | chr1.3:43050583-43050602 | MS.gene034827:CDS | 55.0% | |
TCAACTGGAGGAGGAGGAGT+GGG | - | chr1.3:43050552-43050571 | MS.gene034827:CDS | 55.0% | |
TCCATCACCACCAACCTCCA+TGG | - | chr1.3:43050118-43050137 | MS.gene034827:CDS | 55.0% | |
!! | ACCATGGAGGTTGGTGGTGA+TGG | + | chr1.3:43050122-43050141 | None:intergenic | 55.0% |
AGCAGAGGGGTGGGACATCA+TGG | - | chr1.3:43050596-43050615 | MS.gene034827:CDS | 60.0% | |
CAACTGGAGGAGGAGGAGTG+GGG | - | chr1.3:43050553-43050572 | MS.gene034827:CDS | 60.0% | |
GGCGTATGTTAGCAGAGGGG+TGG | - | chr1.3:43050586-43050605 | MS.gene034827:CDS | 60.0% | |
GCAGACTCCGCCGAGTGCAA+AGG | - | chr1.3:43050347-43050366 | MS.gene034827:CDS | 65.0% | |
GGCGGAGTCTGCTCGCCGAG+TGG | + | chr1.3:43050339-43050358 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 43050087 | 43050758 | 43050087 | ID=MS.gene034827 |
chr1.3 | mRNA | 43050087 | 43050758 | 43050087 | ID=MS.gene034827.t1;Parent=MS.gene034827 |
chr1.3 | exon | 43050485 | 43050758 | 43050485 | ID=MS.gene034827.t1.exon1;Parent=MS.gene034827.t1 |
chr1.3 | CDS | 43050485 | 43050758 | 43050485 | ID=cds.MS.gene034827.t1;Parent=MS.gene034827.t1 |
chr1.3 | exon | 43050087 | 43050455 | 43050087 | ID=MS.gene034827.t1.exon2;Parent=MS.gene034827.t1 |
chr1.3 | CDS | 43050087 | 43050455 | 43050087 | ID=cds.MS.gene034827.t1;Parent=MS.gene034827.t1 |
Gene Sequence |
Protein sequence |