AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene034932

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene034932.t1 MTR_1g061170 93.478 460 27 2 1 458 1 459 0.0 872
MS.gene034932.t1 MTR_1g061170 93.466 352 22 1 107 458 14 364 0.0 677
MS.gene034932.t1 MTR_1g061170 92.580 283 21 0 176 458 1 283 0.0 546
MS.gene034932.t1 MTR_3g104550 41.011 356 182 9 33 384 32 363 1.44e-73 236
MS.gene034932.t1 MTR_5g029680 49.213 254 106 4 31 266 16 264 1.43e-72 237
MS.gene034932.t1 MTR_1g102860 51.082 231 105 5 25 248 15 244 4.03e-69 223
MS.gene034932.t1 MTR_7g095680 46.442 267 136 4 13 273 16 281 3.15e-68 222
MS.gene034932.t1 MTR_4g077970 41.118 304 151 7 45 324 10 309 2.72e-67 223
MS.gene034932.t1 MTR_1g071360 50.785 191 84 2 34 224 19 199 2.16e-57 193
MS.gene034932.t1 MTR_1g071360 50.785 191 84 2 34 224 16 196 4.44e-57 193
MS.gene034932.t1 MTR_2g100680 41.704 223 116 3 23 245 18 226 5.45e-49 174
MS.gene034932.t1 MTR_8g087540 44.199 181 98 2 43 221 8 187 9.74e-47 166
MS.gene034932.t1 MTR_6g043060 40.887 203 112 3 45 245 20 216 1.40e-46 164
MS.gene034932.t1 MTR_8g105780 40.870 230 127 4 45 266 20 248 1.13e-45 163
MS.gene034932.t1 MTR_8g083100 34.906 318 173 11 48 348 23 323 4.58e-45 164
MS.gene034932.t1 MTR_6g086805 40.704 199 115 2 45 243 9 204 8.87e-45 160
MS.gene034932.t1 MTR_2g100670 43.158 190 105 2 47 236 33 219 3.16e-44 157
MS.gene034932.t1 MTR_2g100670 43.158 190 105 2 47 236 141 327 1.83e-43 158
MS.gene034932.t1 MTR_3g101870 67.000 100 33 0 47 146 24 123 2.22e-40 149
MS.gene034932.t1 MTR_2g017890 37.113 194 111 2 45 234 13 199 2.89e-39 146
MS.gene034932.t1 MTR_7g091370 45.283 159 77 1 37 185 12 170 3.75e-39 141
MS.gene034932.t1 MTR_5g010680 62.245 98 37 0 41 138 18 115 4.70e-39 145
MS.gene034932.t1 MTR_5g017470 40.488 205 108 4 41 231 3 207 3.13e-38 140
MS.gene034932.t1 MTR_5g089170 62.626 99 37 0 41 139 19 117 4.29e-36 134
MS.gene034932.t1 MTR_0020s0020 61.957 92 35 0 47 138 33 124 2.09e-35 134
MS.gene034932.t1 MTR_1g100777 58.163 98 41 0 41 138 12 109 4.94e-35 132
MS.gene034932.t1 MTR_4g088900 44.966 149 71 4 47 185 33 180 2.88e-31 119
MS.gene034932.t1 MTR_4g045757 55.882 68 29 1 45 111 12 79 1.37e-18 80.5
MS.gene034932.t1 MTR_5g047190 44.565 92 44 3 55 139 1 92 2.63e-17 77.4
MS.gene034932.t1 MTR_4g077970 30.909 165 95 4 176 324 1 162 3.57e-13 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene034932.t1 AT5G03720 58.687 259 98 4 27 279 35 290 1.27e-97 299
MS.gene034932.t1 AT5G03720 58.687 259 98 4 27 279 35 290 1.27e-97 299
MS.gene034932.t1 AT5G16820 39.791 382 187 9 45 406 25 383 1.42e-70 231
MS.gene034932.t1 AT5G16820 39.791 382 187 9 45 406 25 383 1.42e-70 231
MS.gene034932.t1 AT1G32330 46.008 263 120 4 26 266 11 273 6.32e-70 230
MS.gene034932.t1 AT1G32330 46.008 263 120 4 26 266 11 273 6.88e-70 230
MS.gene034932.t1 AT3G02990 47.368 266 122 5 42 294 18 278 3.26e-67 223
MS.gene034932.t1 AT4G17750 45.290 276 116 6 26 266 21 296 6.55e-66 220
MS.gene034932.t1 AT3G22830 46.753 231 114 2 23 244 37 267 3.36e-65 215
MS.gene034932.t1 AT2G26150 49.302 215 104 2 34 243 31 245 2.47e-64 211
MS.gene034932.t1 AT2G26150 49.302 215 104 2 34 243 31 245 2.47e-64 211
MS.gene034932.t1 AT3G63350 49.010 202 100 1 34 235 15 213 3.84e-61 201
MS.gene034932.t1 AT3G51910 47.170 212 93 3 37 243 19 216 1.10e-57 191
MS.gene034932.t1 AT5G43840 41.296 247 123 5 32 275 4 231 3.84e-56 188
MS.gene034932.t1 AT5G54070 40.090 222 121 4 41 258 65 278 1.93e-50 174
MS.gene034932.t1 AT1G67970 41.778 225 128 3 45 266 17 241 3.17e-50 175
MS.gene034932.t1 AT4G13980 39.899 198 116 1 48 245 24 218 6.44e-47 169
MS.gene034932.t1 AT3G24520 44.974 189 82 4 45 233 15 181 1.16e-44 159
MS.gene034932.t1 AT5G45710 39.896 193 115 1 43 234 9 201 8.97e-42 152
MS.gene034932.t1 AT5G45710 39.896 193 115 1 43 234 9 201 8.97e-42 152
MS.gene034932.t1 AT4G18880 43.850 187 103 1 43 227 11 197 3.47e-40 149
MS.gene034932.t1 AT5G62020 52.893 121 55 1 41 161 17 135 6.13e-38 140
MS.gene034932.t1 AT1G46264 65.263 95 33 0 47 141 34 128 6.62e-38 141
MS.gene034932.t1 AT4G11660 60.396 101 40 0 41 141 53 153 3.18e-37 140
MS.gene034932.t1 AT4G36990 36.792 212 126 3 35 238 2 213 2.66e-36 135
MS.gene034932.t1 AT2G41690 56.436 101 44 0 41 141 34 134 9.33e-36 132
MS.gene034932.t1 AT2G26150 45.775 142 72 2 107 243 49 190 1.59e-29 117
MS.gene034932.t1 AT2G26150 45.775 142 72 2 107 243 49 190 1.59e-29 117
MS.gene034932.t1 AT4G18870 45.161 93 50 1 42 134 8 99 6.17e-20 90.1
MS.gene034932.t1 AT4G18870 44.318 88 49 0 47 134 146 233 7.11e-19 87.0

Find 84 sgRNAs with CRISPR-Local

Find 149 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAGATGAAGAAGAAAATT+TGG 0.205164 1.3:+44217226 None:intergenic
AATTCAGAAACTAATATTAT+TGG 0.214900 1.3:-44215393 MS.gene034932:CDS
TTTGAAGGGTTTCAATCTAT+TGG 0.240093 1.3:-44215282 MS.gene034932:CDS
GAAGTTTGGGTATTGATAAT+TGG 0.249663 1.3:-44215089 MS.gene034932:CDS
GAAACAAATGGTATCTTTCT+TGG 0.279705 1.3:-44215757 MS.gene034932:CDS
CTTTGTTGTTTGGGATCCTT+TGG 0.287745 1.3:-44217036 MS.gene034932:CDS
GATATGTGGGATATTGGTTT+TGG 0.304447 1.3:-44215111 MS.gene034932:CDS
TTATCAAGCAAGAAGATATA+TGG 0.310553 1.3:-44215248 MS.gene034932:CDS
TAGTGAGGTACCAACCAAAT+TGG 0.312029 1.3:-44215596 MS.gene034932:CDS
ATGTGGGATCCTTTGAATTA+TGG 0.316094 1.3:-44215174 MS.gene034932:CDS
TGGTGTTAGCTTTGTTGTTT+GGG 0.316297 1.3:-44217045 MS.gene034932:CDS
GGCGAAGGATCATCTAGTTT+TGG 0.320995 1.3:-44215372 MS.gene034932:CDS
TTGAAGGGTTTCAATCTATT+GGG 0.328172 1.3:-44215281 MS.gene034932:CDS
TCAGGAATAACTTCTTCATT+TGG 0.329440 1.3:+44215309 None:intergenic
ATGGTGTTAGCTTTGTTGTT+TGG 0.339618 1.3:-44217046 MS.gene034932:CDS
ACAAACTTTCTTCTAACTCT+TGG 0.347851 1.3:+44215663 None:intergenic
AGTGAGGTACCAACCAAATT+GGG 0.367055 1.3:-44215595 MS.gene034932:CDS
TCTCTAATAGCAGGGAAATC+TGG 0.369457 1.3:-44215921 MS.gene034932:intron
ACAGCACCAACATTGAAGTT+AGG 0.369889 1.3:+44215222 None:intergenic
ATTAAGCTGACGAACAAAAC+TGG 0.370082 1.3:+44216965 None:intergenic
TTTGAAAGAAATGGTGGAAC+TGG 0.396168 1.3:+44217125 None:intergenic
AAAGATGAAGAAGAAAATTT+GGG 0.405694 1.3:+44217227 None:intergenic
AGGTTGAGATTGAAAGATTG+AGG 0.415211 1.3:-44215893 MS.gene034932:CDS
ATGTCAGATATGTGGGATAT+TGG 0.416242 1.3:-44215117 MS.gene034932:CDS
TGAGATTGAAAGATTGAGGA+AGG 0.438960 1.3:-44215889 MS.gene034932:CDS
GTTGGATCTTCTTCTGATGC+AGG 0.443789 1.3:-44216106 MS.gene034932:intron
AATTATGGAGTACCTGACTT+TGG 0.444329 1.3:-44215159 MS.gene034932:CDS
TGAAACCCTTCAAAATTCTC+AGG 0.455295 1.3:+44215291 None:intergenic
GCAAGATTGACACCGACAAA+TGG 0.456806 1.3:-44216225 MS.gene034932:CDS
GAAGAAGAAAATGTCAAAGA+TGG 0.457561 1.3:-44215624 MS.gene034932:CDS
TAGTGATGTTCCTGTGCCTA+TGG 0.466887 1.3:-44217165 MS.gene034932:CDS
CTTTGAATCCGATCATATCA+TGG 0.467206 1.3:-44217076 MS.gene034932:CDS
GAATATGAAGCATCAGCTAT+AGG 0.469331 1.3:-44217200 MS.gene034932:CDS
TGACTATCTATTTCATCAAA+AGG 0.470522 1.3:+44215051 None:intergenic
TATCAAGCAAGAAGATATAT+GGG 0.482434 1.3:-44215247 MS.gene034932:CDS
CAGCAAGTTGGTAACTATGT+TGG 0.484482 1.3:-44216124 MS.gene034932:CDS
CAGCACCAACATTGAAGTTA+GGG 0.486019 1.3:+44215223 None:intergenic
TCACCTTTAGTCATTTCTCT+AGG 0.488063 1.3:+44215489 None:intergenic
CAAGATTGACACCGACAAAT+GGG 0.503413 1.3:-44216224 MS.gene034932:CDS
GAAACTAATATTATTGGCGA+AGG 0.504296 1.3:-44215387 MS.gene034932:CDS
TCAGCTATAGGTGGTGGTAC+TGG 0.505325 1.3:-44217188 MS.gene034932:CDS
AGCGCGACTTAAGCAGAAGA+AGG 0.506475 1.3:-44215706 MS.gene034932:CDS
TCAAAAGGAGATTCATCAGC+TGG 0.517066 1.3:+44215066 None:intergenic
TTGAAAGATTGAGGAAGGAG+AGG 0.521106 1.3:-44215884 MS.gene034932:CDS
CTACCTAGAGAAATGACTAA+AGG 0.521791 1.3:-44215492 MS.gene034932:CDS
GATATGATCGGATTCAAAGA+AGG 0.522372 1.3:+44217080 None:intergenic
AGATCAAGTGAAAGATAGTG+AGG 0.532262 1.3:+44215513 None:intergenic
TTGAAAGAAATGGTGGAACT+GGG 0.536323 1.3:+44217126 None:intergenic
AACAACAAAGCTAACACCAT+TGG 0.540487 1.3:+44217049 None:intergenic
GTCCGGATTTGAAAACAACT+TGG 0.541092 1.3:+44215734 None:intergenic
TGAACAAAGACAGAAACAAA+TGG 0.541684 1.3:-44215769 MS.gene034932:CDS
CTTGTAACAACTCCAAAGTC+AGG 0.546441 1.3:+44215147 None:intergenic
ATTTGTCGGTGTCAATCTTG+CGG 0.568858 1.3:+44216227 None:intergenic
GATGAATATGCTGCAATGCA+TGG 0.570282 1.3:-44215429 MS.gene034932:CDS
TGGGACCCTAACTTCAATGT+TGG 0.572995 1.3:-44215228 MS.gene034932:CDS
ATAACTCTTGCAAACTCCAA+AGG 0.576307 1.3:+44217020 None:intergenic
GTGGTGACATGTCAGATATG+TGG 0.577350 1.3:-44215125 MS.gene034932:CDS
GAAGCATCAGCTATAGGTGG+TGG 0.582607 1.3:-44217194 MS.gene034932:CDS
ATCATATCATGGAGTTCCAA+TGG 0.583067 1.3:-44217065 MS.gene034932:CDS
TTGGAACTCCATGATATGAT+CGG 0.584421 1.3:+44217068 None:intergenic
TCAGGTACTCCATAATTCAA+AGG 0.586697 1.3:+44215165 None:intergenic
ACTTGTTGAAAAGCATTCAA+AGG 0.586884 1.3:-44216165 MS.gene034932:CDS
CTCATCTGCAAACACTCCAT+AGG 0.589952 1.3:+44217149 None:intergenic
GTGAGGTACCAACCAAATTG+GGG 0.592193 1.3:-44215594 MS.gene034932:CDS
ATATGATCGGATTCAAAGAA+GGG 0.594477 1.3:+44217081 None:intergenic
TTGTTGTGTTTGAAGTGTCT+AGG 0.595204 1.3:+44216993 None:intergenic
TGCAAACACTCCATAGGCAC+AGG 0.597520 1.3:+44217155 None:intergenic
ACGCAGGTAATGTGAATCAA+AGG 0.601321 1.3:-44215803 MS.gene034932:CDS
TTTGATGAAATAGATAGTCA+AGG 0.610338 1.3:-44215048 MS.gene034932:CDS
TGGTGACATGTCAGATATGT+GGG 0.612349 1.3:-44215124 MS.gene034932:CDS
CAAACTGTGGGAATGAGATG+TGG 0.613012 1.3:-44215191 MS.gene034932:CDS
ACGTCTCAATCTCAGCAAGT+TGG 0.616416 1.3:-44216136 MS.gene034932:CDS
AGCAGGGAAATCTGGAGTCG+AGG 0.619956 1.3:-44215913 MS.gene034932:CDS
GACTTTGGAGTTGTTACAAG+TGG 0.625352 1.3:-44215144 MS.gene034932:CDS
TCAAAGATGGAAAGATAGTG+AGG 0.635058 1.3:-44215611 MS.gene034932:CDS
CTGTTGCTACTTCAAACTGT+GGG 0.638412 1.3:-44215203 MS.gene034932:CDS
GATGAAATAGATAGTCAAGG+TGG 0.640962 1.3:-44215045 MS.gene034932:CDS
GACTGTGTTAATGCAAGAAG+TGG 0.653059 1.3:-44215862 MS.gene034932:CDS
AAACTGTGGGAATGAGATGT+GGG 0.653938 1.3:-44215190 MS.gene034932:CDS
CGAATGACAGCTAGTCACGC+AGG 0.663311 1.3:-44215819 MS.gene034932:CDS
GCTGTTGCTACTTCAAACTG+TGG 0.663813 1.3:-44215204 MS.gene034932:CDS
TATGAAGCATCAGCTATAGG+TGG 0.681407 1.3:-44217197 MS.gene034932:CDS
CTTGCTGAGATTGAGACGTG+CGG 0.690178 1.3:+44216140 None:intergenic
TGAGGTACCAACCAAATTGG+GGG 0.710225 1.3:-44215593 MS.gene034932:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTACATTACATAAATTAATA+GGG + chr1.3:44215400-44215419 None:intergenic 10.0%
!! AATTCAGAAACTAATATTAT+TGG - chr1.3:44216884-44216903 MS.gene034932:intron 15.0%
!! GTTACATTACATAAATTAAT+AGG + chr1.3:44215401-44215420 None:intergenic 15.0%
!! TACATTACATAAATTAATAG+GGG + chr1.3:44215399-44215418 None:intergenic 15.0%
!!! TTTTTCTTCTTTTTTTTGTT+TGG - chr1.3:44215435-44215454 MS.gene034932:CDS 15.0%
!! AAAGATGAAGAAGAAAATTT+GGG + chr1.3:44215053-44215072 None:intergenic 20.0%
!! AACAATTTGATGTATCAATT+GGG - chr1.3:44215513-44215532 MS.gene034932:CDS 20.0%
!! TCTTTCAAAAACATTTGATT+TGG - chr1.3:44215166-44215185 MS.gene034932:CDS 20.0%
!! TTATTCATTCTCAGATAATT+TGG - chr1.3:44216009-44216028 MS.gene034932:intron 20.0%
!!! AACATTTTTTCCTTTGAAAA+GGG + chr1.3:44216942-44216961 None:intergenic 20.0%
!!! TAACATTTTTTCCTTTGAAA+AGG + chr1.3:44216943-44216962 None:intergenic 20.0%
!!! TATGTAAAACTTGCATATTT+TGG - chr1.3:44215567-44215586 MS.gene034932:CDS 20.0%
!!! TCAAATGTTTTTGAAAGAAA+TGG + chr1.3:44215164-44215183 None:intergenic 20.0%
! AGAATGAATAAACCAAACAT+AGG + chr1.3:44216000-44216019 None:intergenic 25.0%
! CAAAGATGAAGAAGAAAATT+TGG + chr1.3:44215054-44215073 None:intergenic 25.0%
! GAACAATTTGATGTATCAAT+TGG - chr1.3:44215512-44215531 MS.gene034932:CDS 25.0%
! TATCAAGCAAGAAGATATAT+GGG - chr1.3:44217030-44217049 MS.gene034932:CDS 25.0%
! TGACTATCTATTTCATCAAA+AGG + chr1.3:44217229-44217248 None:intergenic 25.0%
! TTATCAAGCAAGAAGATATA+TGG - chr1.3:44217029-44217048 MS.gene034932:CDS 25.0%
! TTCAATCAACAAACACAAAA+GGG + chr1.3:44215495-44215514 None:intergenic 25.0%
! TTTGATGAAATAGATAGTCA+AGG - chr1.3:44217229-44217248 MS.gene034932:CDS 25.0%
!! ATTTTCTTCTTCATCTTTGA+TGG - chr1.3:44215055-44215074 MS.gene034932:CDS 25.0%
!! TGACATTTTCTTCTTCATTT+TGG + chr1.3:44216649-44216668 None:intergenic 25.0%
!! TTATTCCTGAGAATTTTGAA+GGG - chr1.3:44216981-44217000 MS.gene034932:CDS 25.0%
!!! AATGTTTTTGAAAGAAATGG+TGG + chr1.3:44215161-44215180 None:intergenic 25.0%
!!! ACATTTTTTCCTTTGAAAAG+GGG + chr1.3:44216941-44216960 None:intergenic 25.0%
!!! TAAGCTTGTCTTTTTTGTTT+TGG - chr1.3:44215867-44215886 MS.gene034932:CDS 25.0%
AAGATGAAAATCCCTTGAAA+AGG + chr1.3:44215765-44215784 None:intergenic 30.0%
ACAAACTTTCTTCTAACTCT+TGG + chr1.3:44216617-44216636 None:intergenic 30.0%
AGATGAAAATCCCTTGAAAA+GGG + chr1.3:44215764-44215783 None:intergenic 30.0%
ATATGATCGGATTCAAAGAA+GGG + chr1.3:44215199-44215218 None:intergenic 30.0%
ATTGAAAAACTCCCATTTGT+CGG + chr1.3:44216067-44216086 None:intergenic 30.0%
GAAACAAATGGTATCTTTCT+TGG - chr1.3:44216520-44216539 MS.gene034932:intron 30.0%
GAAACTAATATTATTGGCGA+AGG - chr1.3:44216890-44216909 MS.gene034932:intron 30.0%
GAAGAAGAAAATGTCAAAGA+TGG - chr1.3:44216653-44216672 MS.gene034932:intron 30.0%
GTTCAATCAACAAACACAAA+AGG + chr1.3:44215496-44215515 None:intergenic 30.0%
TAACTGTATCTCTAATAGCA+GGG - chr1.3:44216348-44216367 MS.gene034932:intron 30.0%
TACAATACAGTTAGCTGTAT+TGG + chr1.3:44215910-44215929 None:intergenic 30.0%
TCAATCAACAAACACAAAAG+GGG + chr1.3:44215494-44215513 None:intergenic 30.0%
TCAGGAATAACTTCTTCATT+TGG + chr1.3:44216971-44216990 None:intergenic 30.0%
TGAACAAAGACAGAAACAAA+TGG - chr1.3:44216508-44216527 MS.gene034932:intron 30.0%
TTGAAGGGTTTCAATCTATT+GGG - chr1.3:44216996-44217015 MS.gene034932:CDS 30.0%
TTTGAAGGGTTTCAATCTAT+TGG - chr1.3:44216995-44217014 MS.gene034932:CDS 30.0%
! GTTATTCCTGAGAATTTTGA+AGG - chr1.3:44216980-44216999 MS.gene034932:CDS 30.0%
! TCACATCAAACCTTTTATGT+AGG - chr1.3:44216244-44216263 MS.gene034932:intron 30.0%
! TTCAATGAAGGTTTTCAGAA+AGG - chr1.3:44216081-44216100 MS.gene034932:intron 30.0%
!! AAATGGGAGTTTTTCAATGA+AGG - chr1.3:44216069-44216088 MS.gene034932:intron 30.0%
!! ACTTGTTGAAAAGCATTCAA+AGG - chr1.3:44216112-44216131 MS.gene034932:CDS 30.0%
!! AGTTTGTTAGCCTACATAAA+AGG + chr1.3:44216257-44216276 None:intergenic 30.0%
!! ATAATTTGGTGTTTAAGCAC+AGG - chr1.3:44216023-44216042 MS.gene034932:intron 30.0%
!! GAAGTTTGGGTATTGATAAT+TGG - chr1.3:44217188-44217207 MS.gene034932:CDS 30.0%
!! TAATTTGGTGTTTAAGCACA+GGG - chr1.3:44216024-44216043 MS.gene034932:intron 30.0%
!! TGTGTTTTTGTTACTACTAG+TGG - chr1.3:44215607-44215626 MS.gene034932:CDS 30.0%
!!! GATATTGGTTTTGGAAGTTT+GGG - chr1.3:44217175-44217194 MS.gene034932:CDS 30.0%
!!! GGAGAGTTTTTTTCATCATT+TGG + chr1.3:44215032-44215051 None:intergenic 30.0%
AAATTAATAGGGGCCATTAG+AGG + chr1.3:44215389-44215408 None:intergenic 35.0%
AACAACAAAGCTAACACCAT+TGG + chr1.3:44215231-44215250 None:intergenic 35.0%
ACTACACAATGCAATCAATC+AGG + chr1.3:44215683-44215702 None:intergenic 35.0%
AGATCAAGTGAAAGATAGTG+AGG + chr1.3:44216767-44216786 None:intergenic 35.0%
AGGTTGAGATTGAAAGATTG+AGG - chr1.3:44216384-44216403 MS.gene034932:intron 35.0%
ATAACTCTTGCAAACTCCAA+AGG + chr1.3:44215260-44215279 None:intergenic 35.0%
ATCATATCATGGAGTTCCAA+TGG - chr1.3:44215212-44215231 MS.gene034932:CDS 35.0%
ATGTCAGATATGTGGGATAT+TGG - chr1.3:44217160-44217179 MS.gene034932:CDS 35.0%
ATGTCTATATTCCCCCAATT+TGG + chr1.3:44216698-44216717 None:intergenic 35.0%
ATGTGGGATCCTTTGAATTA+TGG - chr1.3:44217103-44217122 MS.gene034932:CDS 35.0%
ATTAAGCTGACGAACAAAAC+TGG + chr1.3:44215315-44215334 None:intergenic 35.0%
CAATCAACAAACACAAAAGG+GGG + chr1.3:44215493-44215512 None:intergenic 35.0%
CGTCAGCTTAATACTTATGT+GGG - chr1.3:44215323-44215342 MS.gene034932:CDS 35.0%
CTAACTGTATCTCTAATAGC+AGG - chr1.3:44216347-44216366 MS.gene034932:intron 35.0%
CTACCTAGAGAAATGACTAA+AGG - chr1.3:44216785-44216804 MS.gene034932:intron 35.0%
CTTTGAATCCGATCATATCA+TGG - chr1.3:44215201-44215220 MS.gene034932:CDS 35.0%
GATATGATCGGATTCAAAGA+AGG + chr1.3:44215200-44215219 None:intergenic 35.0%
GATGAAATAGATAGTCAAGG+TGG - chr1.3:44217232-44217251 MS.gene034932:CDS 35.0%
TCAAAGATGGAAAGATAGTG+AGG - chr1.3:44216666-44216685 MS.gene034932:intron 35.0%
TCACCTTTAGTCATTTCTCT+AGG + chr1.3:44216791-44216810 None:intergenic 35.0%
TCAGGTACTCCATAATTCAA+AGG + chr1.3:44217115-44217134 None:intergenic 35.0%
TCGTCAGCTTAATACTTATG+TGG - chr1.3:44215322-44215341 MS.gene034932:CDS 35.0%
TGAAACCCTTCAAAATTCTC+AGG + chr1.3:44216989-44217008 None:intergenic 35.0%
TGAGATTGAAAGATTGAGGA+AGG - chr1.3:44216388-44216407 MS.gene034932:intron 35.0%
TTGGAACTCCATGATATGAT+CGG + chr1.3:44215212-44215231 None:intergenic 35.0%
TTTCTTGAGTCTCCTATGTT+TGG - chr1.3:44215985-44216004 MS.gene034932:intron 35.0%
! AAGGGATTTTCATCTTTCCA+AGG - chr1.3:44215769-44215788 MS.gene034932:CDS 35.0%
! AATTATGGAGTACCTGACTT+TGG - chr1.3:44217118-44217137 MS.gene034932:CDS 35.0%
! ACTTTTCACAATGCCTCTAA+TGG - chr1.3:44215373-44215392 MS.gene034932:CDS 35.0%
! ATAGTGAGGAGAGTTTTCAA+TGG + chr1.3:44216753-44216772 None:intergenic 35.0%
! GAATATGAAGCATCAGCTAT+AGG - chr1.3:44215077-44215096 MS.gene034932:CDS 35.0%
! GATTTTCATCTTTCCAAGGT+AGG - chr1.3:44215773-44215792 MS.gene034932:CDS 35.0%
! TTGAAAGAAATGGTGGAACT+GGG + chr1.3:44215154-44215173 None:intergenic 35.0%
! TTGTTGTGTTTGAAGTGTCT+AGG + chr1.3:44215287-44215306 None:intergenic 35.0%
! TTTGAAAGAAATGGTGGAAC+TGG + chr1.3:44215155-44215174 None:intergenic 35.0%
!! ATGGTGTTAGCTTTGTTGTT+TGG - chr1.3:44215231-44215250 MS.gene034932:CDS 35.0%
!! TGGTGTTAGCTTTGTTGTTT+GGG - chr1.3:44215232-44215251 MS.gene034932:CDS 35.0%
!!! GATATGTGGGATATTGGTTT+TGG - chr1.3:44217166-44217185 MS.gene034932:CDS 35.0%
!!! GGATATTGGTTTTGGAAGTT+TGG - chr1.3:44217174-44217193 MS.gene034932:CDS 35.0%
AAACTGTGGGAATGAGATGT+GGG - chr1.3:44217087-44217106 MS.gene034932:CDS 40.0%
ACACAATGCAATCAATCAGG+AGG + chr1.3:44215680-44215699 None:intergenic 40.0%
ACAGCACCAACATTGAAGTT+AGG + chr1.3:44217058-44217077 None:intergenic 40.0%
ACGCAGGTAATGTGAATCAA+AGG - chr1.3:44216474-44216493 MS.gene034932:intron 40.0%
CAAGATTGACACCGACAAAT+GGG - chr1.3:44216053-44216072 MS.gene034932:intron 40.0%
CAGCACCAACATTGAAGTTA+GGG + chr1.3:44217057-44217076 None:intergenic 40.0%
CTATATTCCCCCAATTTGGT+TGG + chr1.3:44216694-44216713 None:intergenic 40.0%
CTTGTAACAACTCCAAAGTC+AGG + chr1.3:44217133-44217152 None:intergenic 40.0%
GACTGTGTTAATGCAAGAAG+TGG - chr1.3:44216415-44216434 MS.gene034932:intron 40.0%
GATGAATATGCTGCAATGCA+TGG - chr1.3:44216848-44216867 MS.gene034932:intron 40.0%
GTCCGGATTTGAAAACAACT+TGG + chr1.3:44216546-44216565 None:intergenic 40.0%
TCAAAAGGAGATTCATCAGC+TGG + chr1.3:44217214-44217233 None:intergenic 40.0%
TCTCTAATAGCAGGGAAATC+TGG - chr1.3:44216356-44216375 MS.gene034932:intron 40.0%
TGAAACACAGAATCCTACCT+TGG + chr1.3:44215789-44215808 None:intergenic 40.0%
TGGTGACATGTCAGATATGT+GGG - chr1.3:44217153-44217172 MS.gene034932:CDS 40.0%
TTAAGTCGCGCTAAAAAGTC+CGG + chr1.3:44216563-44216582 None:intergenic 40.0%
TTGAAAGATTGAGGAAGGAG+AGG - chr1.3:44216393-44216412 MS.gene034932:intron 40.0%
! AATGTTGCTCTCCCTTTTCA+AGG - chr1.3:44215750-44215769 MS.gene034932:CDS 40.0%
! AGTGAGGTACCAACCAAATT+GGG - chr1.3:44216682-44216701 MS.gene034932:intron 40.0%
! ATGTTGCTCTCCCTTTTCAA+GGG - chr1.3:44215751-44215770 MS.gene034932:CDS 40.0%
! CTGTTGCTACTTCAAACTGT+GGG - chr1.3:44217074-44217093 MS.gene034932:CDS 40.0%
! CTTGATGAACCCCTTTTCAA+AGG - chr1.3:44216929-44216948 MS.gene034932:intron 40.0%
! GGAGAGTTTTCAATGGAAAC+TGG + chr1.3:44216746-44216765 None:intergenic 40.0%
! TAGTGAGGTACCAACCAAAT+TGG - chr1.3:44216681-44216700 MS.gene034932:intron 40.0%
! TATGAAGCATCAGCTATAGG+TGG - chr1.3:44215080-44215099 MS.gene034932:CDS 40.0%
!! ATTTGTCGGTGTCAATCTTG+CGG + chr1.3:44216053-44216072 None:intergenic 40.0%
!! CAGCAAGTTGGTAACTATGT+TGG - chr1.3:44216153-44216172 MS.gene034932:CDS 40.0%
!! CTTTGTTGTTTGGGATCCTT+TGG - chr1.3:44215241-44215260 MS.gene034932:CDS 40.0%
!! GACTTTGGAGTTGTTACAAG+TGG - chr1.3:44217133-44217152 MS.gene034932:CDS 40.0%
!! GGCCAAGTTGTTTTCAAATC+CGG - chr1.3:44216541-44216560 MS.gene034932:intron 40.0%
AACAAACACAAAAGGGGGAG+AGG + chr1.3:44215488-44215507 None:intergenic 45.0%
ACAAACACAAAAGGGGGAGA+GGG + chr1.3:44215487-44215506 None:intergenic 45.0%
ACGTCTCAATCTCAGCAAGT+TGG - chr1.3:44216141-44216160 MS.gene034932:CDS 45.0%
ACTGCTGGAATTGGCAACAT+AGG - chr1.3:44215723-44215742 MS.gene034932:CDS 45.0%
ATGTTGCCAATTCCAGCAGT+AGG + chr1.3:44215723-44215742 None:intergenic 45.0%
CAAACTGTGGGAATGAGATG+TGG - chr1.3:44217086-44217105 MS.gene034932:CDS 45.0%
CTCATCTGCAAACACTCCAT+AGG + chr1.3:44215131-44215150 None:intergenic 45.0%
GCAAGATTGACACCGACAAA+TGG - chr1.3:44216052-44216071 MS.gene034932:intron 45.0%
GTGGTGACATGTCAGATATG+TGG - chr1.3:44217152-44217171 MS.gene034932:CDS 45.0%
GTTGGATCTTCTTCTGATGC+AGG - chr1.3:44216171-44216190 MS.gene034932:CDS 45.0%
TAGTGATGTTCCTGTGCCTA+TGG - chr1.3:44215112-44215131 MS.gene034932:CDS 45.0%
TGGGACCCTAACTTCAATGT+TGG - chr1.3:44217049-44217068 MS.gene034932:CDS 45.0%
! GCTGTTGCTACTTCAAACTG+TGG - chr1.3:44217073-44217092 MS.gene034932:CDS 45.0%
! GTGAGGTACCAACCAAATTG+GGG - chr1.3:44216683-44216702 MS.gene034932:intron 45.0%
! TGAGGTACCAACCAAATTGG+GGG - chr1.3:44216684-44216703 MS.gene034932:intron 45.0%
!! GGCGAAGGATCATCTAGTTT+TGG - chr1.3:44216905-44216924 MS.gene034932:intron 45.0%
AGCGCGACTTAAGCAGAAGA+AGG - chr1.3:44216571-44216590 MS.gene034932:intron 50.0%
CATTCAGAGACTCCTACTGC+TGG - chr1.3:44215708-44215727 MS.gene034932:CDS 50.0%
CTTGCTGAGATTGAGACGTG+CGG + chr1.3:44216140-44216159 None:intergenic 50.0%
GAGACTCCTACTGCTGGAAT+TGG - chr1.3:44215714-44215733 MS.gene034932:CDS 50.0%
TGCAAACACTCCATAGGCAC+AGG + chr1.3:44215125-44215144 None:intergenic 50.0%
! GAAGCATCAGCTATAGGTGG+TGG - chr1.3:44215083-44215102 MS.gene034932:CDS 50.0%
! TCAGCTATAGGTGGTGGTAC+TGG - chr1.3:44215089-44215108 MS.gene034932:CDS 50.0%
CGAATGACAGCTAGTCACGC+AGG - chr1.3:44216458-44216477 MS.gene034932:intron 55.0%
! AGCAGGGAAATCTGGAGTCG+AGG - chr1.3:44216364-44216383 MS.gene034932:intron 55.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 44215023 44217276 44215023 ID=MS.gene034932
chr1.3 mRNA 44215023 44217276 44215023 ID=MS.gene034932.t1;Parent=MS.gene034932
chr1.3 exon 44216959 44217276 44216959 ID=MS.gene034932.t1.exon1;Parent=MS.gene034932.t1
chr1.3 CDS 44216959 44217276 44216959 ID=cds.MS.gene034932.t1;Parent=MS.gene034932.t1
chr1.3 exon 44216107 44216254 44216107 ID=MS.gene034932.t1.exon2;Parent=MS.gene034932.t1
chr1.3 CDS 44216107 44216254 44216107 ID=cds.MS.gene034932.t1;Parent=MS.gene034932.t1
chr1.3 exon 44215023 44215933 44215023 ID=MS.gene034932.t1.exon3;Parent=MS.gene034932.t1
chr1.3 CDS 44215023 44215933 44215023 ID=cds.MS.gene034932.t1;Parent=MS.gene034932.t1
Gene Sequence

>MS.gene034932

ATGAATCCAAATGATGAAAAAAACTCTCCCAAATTTTCTTCTTCATCTTTGATGGAATATGAAGCATCAGCTATAGGTGGTGGTACTGGTAGTGATGTTCCTGTGCCTATGGAGTGTTTGCAGATGAGCCCAGTTCCACCATTTCTTTCAAAAACATTTGATTTGGTTGATGACCCTTCTTTGAATCCGATCATATCATGGAGTTCCAATGGTGTTAGCTTTGTTGTTTGGGATCCTTTGGAGTTTGCAAGAGTTATCTTGCCTAGACACTTCAAACACAACAATTTCTCCAGTTTTGTTCGTCAGCTTAATACTTATGTGGGTATTTTTGCAATTTATATTGTTTTGCTACTTTTCACAATGCCTCTAATGGCCCCTATTAATTTATGTAATGTAACTAACTATTTTTTATTTTTTCTTCTTTTTTTTGTTTGGAAGTATTTGTAACTAACTATTTAATTCCCTCTCCCCCTTTTGTGTTTGTTGATTGAACAATTTGATGTATCAATTGGGAATGTAAATAATATTTTTGCTGATTGTATTGTATGTAAAACTTGCATATTTTGGTATATGCTCTTTGTAATTGTGTTTTTGTTACTACTAGTGGAACTATGTAATAAAATAAGCACACACACATTGCAGATATGTTTGTTTCCTCCTGATTGATTGCATTGTGTAGTTATAGCATTCAGAGACTCCTACTGCTGGAATTGGCAACATAGGAGACAATGTTGCTCTCCCTTTTCAAGGGATTTTCATCTTTCCAAGGTAGGATTCTGTGTTTCAATGATGTGTTTTGTGTGTTCTTTGACTTTAGATTATATTTTTGTGATGCATTTTATCATAAGCTTGTCTTTTTTGTTTTGGATTACAGATTGCATTCTCCAATACAGCTAACTGTATTGTATCATGTAACTATTTTGTTTTTGCTTTGATATATGTTACTTGTATTTTTTTCTTTCTTTCTTGAGTCTCCTATGTTTGGTTTATTCATTCTCAGATAATTTGGTGTTTAAGCACAGGGATTCCGCAAGATTGACACCGACAAATGGGAGTTTTTCAATGAAGGTTTTCAGAAAGGTAAGAAGCACTTGTTGAAAAGCATTCAAAGGCGCCGCACGTCTCAATCTCAGCAAGTTGGTAACTATGTTGGATCTTCTTCTGATGCAGGTATTAGAAAAATATAAATAGTATTAATATGAGAGAAGTGATTATAAGTGTTCACATCAAACCTTTTATGTAGGCTAACAAACTAGTAACTAACTAACTAACTATATTTCTATATATGCTTACAAACTAGTTACAAACTTCTACTAGTAACTAACTAACTGTATCTCTAATAGCAGGGAAATCTGGAGTCGAGGTTGAGATTGAAAGATTGAGGAAGGAGAGGACTGTGTTAATGCAAGAAGTGGTTGATTTACAGCAGCAACAACGAATGACAGCTAGTCACGCAGGTAATGTGAATCAAAGGCTTCAATCTGCTGAACAAAGACAGAAACAAATGGTATCTTTCTTGGCCAAGTTGTTTTCAAATCCGGACTTTTTAGCGCGACTTAAGCAGAAGAAGGAACAGAAAGATATAGAATCTCCAAGAGTTAGAAGAAAGTTTGTTAAGCAAAACCAAAATGAAGAAGAAAATGTCAAAGATGGAAAGATAGTGAGGTACCAACCAAATTGGGGGAATATAGACATGTCTTGTGAAACTCAAGAACTAAGTCCAGTTTCCATTGAAAACTCTCCTCACTATCTTTCACTTGATCTACCTAGAGAAATGACTAAAGGTGAAGAAGATTTTACTTCGCAAATTGAGAATATTTCATCAGATGAATATGCTGCAATGCATGGAATTTTCATGTCAAATTCAGAAACTAATATTATTGGCGAAGGATCATCTAGTTTTGGACTTGATGAACCCCTTTTCAAAGGAAAAAATGTTATTAGTCCAAATGAAGAAGTTATTCCTGAGAATTTTGAAGGGTTTCAATCTATTGGGACTGAAAGTATTATCAAGCAAGAAGATATATGGGACCCTAACTTCAATGTTGGTGCTGTTGCTACTTCAAACTGTGGGAATGAGATGTGGGATCCTTTGAATTATGGAGTACCTGACTTTGGAGTTGTTACAAGTGGTGACATGTCAGATATGTGGGATATTGGTTTTGGAAGTTTGGGTATTGATAATTGGCCAGCTGATGAATCTCCTTTTGATGAAATAGATAGTCAAGGTGGTAAGCATGATAGACCTACCTAA
Protein sequence

>MS.gene034932.t1

MNPNDEKNSPKFSSSSLMEYEASAIGGGTGSDVPVPMECLQMSPVPPFLSKTFDLVDDPSLNPIISWSSNGVSFVVWDPLEFARVILPRHFKHNNFSSFVRQLNTYGFRKIDTDKWEFFNEGFQKGKKHLLKSIQRRRTSQSQQVGNYVGSSSDAAGKSGVEVEIERLRKERTVLMQEVVDLQQQQRMTASHAGNVNQRLQSAEQRQKQMVSFLAKLFSNPDFLARLKQKKEQKDIESPRVRRKFVKQNQNEEENVKDGKIVRYQPNWGNIDMSCETQELSPVSIENSPHYLSLDLPREMTKGEEDFTSQIENISSDEYAAMHGIFMSNSETNIIGEGSSSFGLDEPLFKGKNVISPNEEVIPENFEGFQSIGTESIIKQEDIWDPNFNVGAVATSNCGNEMWDPLNYGVPDFGVVTSGDMSDMWDIGFGSLGIDNWPADESPFDEIDSQGGKHDRPT