Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034947.t1 | XP_003590392.1 | 99.8 | 438 | 1 | 0 | 75 | 512 | 75 | 512 | 1.70E-246 | 861.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034947.t1 | Q7VD61 | 48.5 | 241 | 118 | 3 | 271 | 509 | 1 | 237 | 6.2e-59 | 229.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034947.t1 | A7UQU8 | 99.8 | 438 | 1 | 0 | 75 | 512 | 75 | 512 | 1.3e-246 | 861.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene034947.t1 | TF | Trihelix |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034947.t1 | MTR_1g061600 | 99.805 | 512 | 1 | 0 | 1 | 512 | 1 | 512 | 0.0 | 1069 |
| MS.gene034947.t1 | MTR_8g093330 | 48.106 | 264 | 124 | 4 | 252 | 508 | 56 | 313 | 1.25e-77 | 246 |
| MS.gene034947.t1 | MTR_2g016140 | 35.644 | 101 | 59 | 3 | 133 | 228 | 23 | 122 | 1.56e-15 | 78.2 |
| MS.gene034947.t1 | MTR_2g016140 | 35.644 | 101 | 59 | 3 | 133 | 228 | 23 | 122 | 1.57e-15 | 78.2 |
| MS.gene034947.t1 | MTR_4g079960 | 36.275 | 102 | 58 | 3 | 133 | 228 | 31 | 131 | 1.82e-15 | 77.8 |
| MS.gene034947.t1 | MTR_1g037650 | 41.346 | 104 | 51 | 4 | 121 | 221 | 27 | 123 | 2.07e-15 | 75.1 |
| MS.gene034947.t1 | MTR_6g486270 | 37.255 | 102 | 61 | 2 | 131 | 230 | 128 | 228 | 2.94e-15 | 77.8 |
| MS.gene034947.t1 | MTR_4g079960 | 36.275 | 102 | 58 | 3 | 133 | 228 | 31 | 131 | 3.12e-15 | 77.0 |
| MS.gene034947.t1 | MTR_4g079960 | 36.275 | 102 | 58 | 3 | 133 | 228 | 31 | 131 | 3.41e-15 | 77.0 |
| MS.gene034947.t1 | MTR_3g014280 | 41.346 | 104 | 51 | 4 | 121 | 221 | 27 | 123 | 2.34e-14 | 74.7 |
| MS.gene034947.t1 | MTR_5g017500 | 34.000 | 100 | 60 | 2 | 133 | 226 | 22 | 121 | 1.96e-13 | 70.1 |
| MS.gene034947.t1 | MTR_4g117990 | 38.000 | 100 | 58 | 2 | 133 | 228 | 44 | 143 | 5.40e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034947.t1 | AT3G10030 | 56.364 | 550 | 187 | 7 | 1 | 509 | 1 | 538 | 0.0 | 591 |
| MS.gene034947.t1 | AT3G10030 | 55.086 | 521 | 181 | 7 | 1 | 480 | 1 | 509 | 0.0 | 542 |
| MS.gene034947.t1 | AT3G18680 | 53.906 | 256 | 113 | 2 | 255 | 508 | 78 | 330 | 1.15e-90 | 281 |
| MS.gene034947.t1 | AT3G18680 | 47.751 | 289 | 113 | 3 | 255 | 508 | 78 | 363 | 1.97e-83 | 263 |
| MS.gene034947.t1 | AT3G54390 | 36.441 | 118 | 65 | 3 | 127 | 242 | 48 | 157 | 3.55e-17 | 82.8 |
| MS.gene034947.t1 | AT3G54390 | 36.441 | 118 | 65 | 3 | 127 | 242 | 32 | 141 | 3.57e-17 | 82.8 |
| MS.gene034947.t1 | AT3G58630 | 30.872 | 149 | 78 | 3 | 133 | 256 | 26 | 174 | 2.81e-16 | 80.5 |
| MS.gene034947.t1 | AT3G58630 | 30.872 | 149 | 78 | 3 | 133 | 256 | 26 | 174 | 3.15e-16 | 80.1 |
| MS.gene034947.t1 | AT3G14180 | 37.607 | 117 | 66 | 4 | 112 | 224 | 63 | 176 | 6.34e-16 | 80.5 |
| MS.gene034947.t1 | AT3G24490 | 31.667 | 120 | 73 | 3 | 105 | 221 | 64 | 177 | 1.33e-12 | 69.3 |
| MS.gene034947.t1 | AT2G44730 | 38.043 | 92 | 53 | 2 | 133 | 220 | 64 | 155 | 2.56e-12 | 68.9 |
Find 136 sgRNAs with CRISPR-Local
Find 316 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGGAAGAGTTGTTATATT+TGG | 0.225653 | 1.3:-44412879 | MS.gene034947:CDS |
| TTGACAATGCTTTGGACTTC+AGG | 0.272821 | 1.3:+44414387 | None:intergenic |
| ATTAGTGGATCGGCACTTAC+TGG | 0.274531 | 1.3:-44414335 | MS.gene034947:CDS |
| CGACATATCTGCTGCTCTTC+GGG | 0.289993 | 1.3:-44412817 | MS.gene034947:CDS |
| ATATTTGGTGGCATTGGTTT+TGG | 0.302206 | 1.3:-44412864 | MS.gene034947:CDS |
| CTTTCGAGCACATATCCTTC+AGG | 0.327576 | 1.3:-44412581 | MS.gene034947:CDS |
| GAACAACTCTCCGCCATCTA+AGG | 0.331588 | 1.3:+44414363 | None:intergenic |
| GGTGGTGAGGTGCGAAGGTT+TGG | 0.337687 | 1.3:+44416307 | None:intergenic |
| GAGAGTGGTGGTTGTGGTGG+TGG | 0.365463 | 1.3:+44416289 | None:intergenic |
| TGCGAGGAAAATGCCATTCC+TGG | 0.369901 | 1.3:-44412507 | MS.gene034947:intron |
| CCGACATATCTGCTGCTCTT+CGG | 0.371066 | 1.3:-44412818 | MS.gene034947:CDS |
| TATTGTTGGGAATTCGCTTC+CGG | 0.371702 | 1.3:-44415731 | MS.gene034947:CDS |
| CGAAGGTTTGGTGGAGGTGG+TGG | 0.380551 | 1.3:+44416319 | None:intergenic |
| TCAATCAACTTTAGAGAAGA+TGG | 0.381962 | 1.3:-44412988 | MS.gene034947:CDS |
| AACCTTAGGGTCAATATTGC+AGG | 0.385341 | 1.3:+44414304 | None:intergenic |
| GTCTAGAGGTGTCACCTCTA+TGG | 0.386263 | 1.3:-44412550 | MS.gene034947:CDS |
| TCTAAGGTTTGACAATGCTT+TGG | 0.391295 | 1.3:+44414379 | None:intergenic |
| TTTCTGCTAGTCATTGGCCT+TGG | 0.394011 | 1.3:-44415771 | MS.gene034947:CDS |
| CTTAGATTGCCTAGGTGAAA+TGG | 0.396098 | 1.3:+44415669 | None:intergenic |
| AGGTTTGGTGGAGGTGGTGG+TGG | 0.399667 | 1.3:+44416322 | None:intergenic |
| GGAGGTGGTGGTGGTGAGAG+TGG | 0.404152 | 1.3:+44416331 | None:intergenic |
| GTTGCATTTCTGCTAGTCAT+TGG | 0.405063 | 1.3:-44415777 | MS.gene034947:CDS |
| GGCACACTTATTGACCAAAC+TGG | 0.406605 | 1.3:-44412079 | MS.gene034947:CDS |
| GTTTACTTGACCTCCACTGC+TGG | 0.412531 | 1.3:+44414412 | None:intergenic |
| AAGCATTGTCAAACCTTAGA+TGG | 0.420124 | 1.3:-44414376 | MS.gene034947:CDS |
| CTTCAGGTAGCAATTGTTGT+TGG | 0.428109 | 1.3:-44413997 | MS.gene034947:intron |
| CCACCGTTACCGCTAGAAAC+AGG | 0.428189 | 1.3:+44416060 | None:intergenic |
| AAGCAGATGGAACATATTGT+TGG | 0.431908 | 1.3:-44415745 | MS.gene034947:CDS |
| GGTGAGGTGCGAAGGTTTGG+TGG | 0.432109 | 1.3:+44416310 | None:intergenic |
| GTGCGAAGGTTTGGTGGAGG+TGG | 0.433564 | 1.3:+44416316 | None:intergenic |
| GTTGCAATAGCTTCCCGTCT+TGG | 0.434010 | 1.3:-44414112 | MS.gene034947:CDS |
| GGAATCTAAGAGGAAGAGAT+TGG | 0.434366 | 1.3:-44415924 | MS.gene034947:CDS |
| GGAAGAGTTGTTATATTTGG+TGG | 0.436188 | 1.3:-44412876 | MS.gene034947:CDS |
| GGTGGTGAGAGTGGTGGTTG+TGG | 0.437072 | 1.3:+44416283 | None:intergenic |
| GTTAGCTTATAGCTCCAGTT+TGG | 0.437333 | 1.3:+44412065 | None:intergenic |
| CGTTTGCTGAACCGTACAAT+AGG | 0.437374 | 1.3:-44412926 | MS.gene034947:CDS |
| GTTGTTATATTTGGTGGCAT+TGG | 0.439242 | 1.3:-44412870 | MS.gene034947:CDS |
| AGCAGATGGAACATATTGTT+GGG | 0.444247 | 1.3:-44415744 | MS.gene034947:CDS |
| GACGGAGGTGGTGATGTGTT+TGG | 0.447470 | 1.3:+44416236 | None:intergenic |
| CTGCTCTGCAGTTAATGCTC+AGG | 0.451851 | 1.3:-44412667 | MS.gene034947:intron |
| AGGTTGATAATTTGAAGAAA+AGG | 0.452877 | 1.3:-44415831 | MS.gene034947:CDS |
| GATGTACTGCATACCAAGTT+GGG | 0.454334 | 1.3:-44413921 | MS.gene034947:intron |
| ATAGAAAAGATCGAGAAGAA+TGG | 0.456281 | 1.3:-44416011 | MS.gene034947:CDS |
| TCTATACTCTGCTCCTACTC+CGG | 0.456827 | 1.3:+44416029 | None:intergenic |
| GTCGTCGTCGGCGACGGCGG+CGG | 0.456922 | 1.3:+44416212 | None:intergenic |
| TTTATCATCATCAGCAAACT+TGG | 0.459547 | 1.3:+44415708 | None:intergenic |
| GGTGAGAGTGGTGGTTGTGG+TGG | 0.464473 | 1.3:+44416286 | None:intergenic |
| GAGAGACATAGAATGAATAA+TGG | 0.466819 | 1.3:-44415799 | MS.gene034947:CDS |
| GTGGTGGTGGTGAGGTGCGA+AGG | 0.467732 | 1.3:+44416302 | None:intergenic |
| TGTGATGCAACGACGTCGTA+TGG | 0.469790 | 1.3:-44416105 | MS.gene034947:CDS |
| TCCTTTCTCAAGATGCCTGA+TGG | 0.470108 | 1.3:+44412896 | None:intergenic |
| GTCGGCGACGGCGGCGGAGA+CGG | 0.470366 | 1.3:+44416218 | None:intergenic |
| ACAATAGGCAACGGGCCATC+AGG | 0.470864 | 1.3:-44412911 | MS.gene034947:CDS |
| TTGGCCTTGGTTTAAGCAGA+TGG | 0.477301 | 1.3:-44415758 | MS.gene034947:CDS |
| GTCTCCGTCGTCGTCGGCGA+CGG | 0.482206 | 1.3:+44416206 | None:intergenic |
| GTGATTAACCTTACCCAACT+TGG | 0.488217 | 1.3:+44413908 | None:intergenic |
| CAGGTAGCAATTGTTGTTGG+AGG | 0.488440 | 1.3:-44413994 | MS.gene034947:CDS |
| GAATCTAAGAGGAAGAGATT+GGG | 0.489819 | 1.3:-44415923 | MS.gene034947:CDS |
| TGGAGAAGTGGTGGTGAGAG+TGG | 0.496490 | 1.3:+44416274 | None:intergenic |
| ATTTCTTCTGTGGAGATGCA+TGG | 0.497325 | 1.3:-44413966 | MS.gene034947:CDS |
| TGCTGCTCTTCGGGCTTCAG+AGG | 0.502112 | 1.3:-44412808 | MS.gene034947:CDS |
| TTGGGAAGAAGTAGCTTCAA+TGG | 0.503405 | 1.3:-44415905 | MS.gene034947:CDS |
| CATCGACGTTGGTACCTTTG+AGG | 0.507047 | 1.3:+44412640 | None:intergenic |
| TTTCGAGCACATATCCTTCA+GGG | 0.508101 | 1.3:-44412580 | MS.gene034947:CDS |
| GACGGCGGCGGAGACGGAGG+TGG | 0.510775 | 1.3:+44416224 | None:intergenic |
| TAAAGTTGATTGAAGCAGTA+AGG | 0.510796 | 1.3:+44412998 | None:intergenic |
| TGGTGGTTGTGGTGGTGGTG+AGG | 0.511118 | 1.3:+44416294 | None:intergenic |
| TCTTAAATTTGTCAGCATGA+TGG | 0.513943 | 1.3:-44413036 | MS.gene034947:intron |
| ATAGTATTGCTTACCAGGAA+TGG | 0.515872 | 1.3:+44412494 | None:intergenic |
| GATGCATGGGTAACTGCAAC+TGG | 0.517940 | 1.3:-44413952 | MS.gene034947:CDS |
| GCCATCAGGCATCTTGAGAA+AGG | 0.521422 | 1.3:-44412897 | MS.gene034947:CDS |
| GGTGGTGGTGGTGAGAGTGG+TGG | 0.521909 | 1.3:+44416334 | None:intergenic |
| CTGTACCTCCACACCAAGAC+GGG | 0.522588 | 1.3:+44414099 | None:intergenic |
| ATGGCCCGTTGCCTATTGTA+CGG | 0.527865 | 1.3:+44412915 | None:intergenic |
| AGCTTCCCGTCTTGGTGTGG+AGG | 0.534343 | 1.3:-44414104 | MS.gene034947:intron |
| TCCGTCGTCGTCGGCGACGG+CGG | 0.535708 | 1.3:+44416209 | None:intergenic |
| AGATGTACTGCATACCAAGT+TGG | 0.537226 | 1.3:-44413922 | MS.gene034947:CDS |
| TGCCTAGGTGAAATGGAAGC+AGG | 0.537551 | 1.3:+44415676 | None:intergenic |
| AACATTTCAAAAGCTTTGTG+TGG | 0.537883 | 1.3:-44412112 | MS.gene034947:CDS |
| TCATCATCAGCAAACTTGGC+CGG | 0.538573 | 1.3:+44415712 | None:intergenic |
| TACCTGCAATATTGACCCTA+AGG | 0.540236 | 1.3:-44414306 | MS.gene034947:intron |
| TTTCTTCTGTGGAGATGCAT+GGG | 0.540958 | 1.3:-44413965 | MS.gene034947:CDS |
| GGAGGTCGTAATTTCTTCTG+TGG | 0.542254 | 1.3:-44413976 | MS.gene034947:CDS |
| CTACCAGCGTCATCGTCGAA+TGG | 0.542605 | 1.3:+44416162 | None:intergenic |
| CAATCAACTTTAGAGAAGAT+GGG | 0.544338 | 1.3:-44412987 | MS.gene034947:CDS |
| AGGGTCAATATTGCAGGTAT+CGG | 0.548147 | 1.3:+44414310 | None:intergenic |
| AAACCTGTTTCTAGCGGTAA+CGG | 0.550390 | 1.3:-44416063 | MS.gene034947:CDS |
| AGGTGGTGATGTGTTTGGAT+TGG | 0.554894 | 1.3:+44416241 | None:intergenic |
| GTTTCTAGCGGTAACGGTGG+AGG | 0.556622 | 1.3:-44416057 | MS.gene034947:CDS |
| TTTCACCTAGGCAATCTAAG+AGG | 0.557596 | 1.3:-44415666 | MS.gene034947:intron |
| CTGAATCGAGGGAATCTAAG+AGG | 0.560567 | 1.3:-44415934 | MS.gene034947:CDS |
| TGAACCGTACAATAGGCAAC+GGG | 0.562366 | 1.3:-44412919 | MS.gene034947:CDS |
| GATATGTCGGTTGAGAAAAG+TGG | 0.562539 | 1.3:+44412831 | None:intergenic |
| GGCGACGGCGGCGGAGACGG+AGG | 0.562987 | 1.3:+44416221 | None:intergenic |
| GTCATATACGCCATCGACGT+TGG | 0.565823 | 1.3:+44412629 | None:intergenic |
| AATGCTCAGGCTGTCCTCAA+AGG | 0.568956 | 1.3:-44412654 | MS.gene034947:CDS |
| GCTGCTCTTCGGGCTTCAGA+GGG | 0.570088 | 1.3:-44412807 | MS.gene034947:intron |
| CGTATGGATTCAACAACAAA+CGG | 0.572327 | 1.3:-44416089 | MS.gene034947:CDS |
| ACAAACTTCAGTTTCAATGC+AGG | 0.580585 | 1.3:-44412949 | MS.gene034947:CDS |
| GGTGGAGGAAGCGCCGGAGT+AGG | 0.580586 | 1.3:-44416042 | MS.gene034947:CDS |
| GGTGTCGTCTCCGTCGTCGT+CGG | 0.581790 | 1.3:+44416200 | None:intergenic |
| AACTTCATTTGAAACTAACA+TGG | 0.588078 | 1.3:+44414132 | None:intergenic |
| CTCAAAGGTACCAACGTCGA+TGG | 0.588727 | 1.3:-44412639 | MS.gene034947:CDS |
| TTAAACCTCTTAGATTGCCT+AGG | 0.591137 | 1.3:+44415661 | None:intergenic |
| GCCGCCGTCGCCGACGACGA+CGG | 0.592641 | 1.3:-44416210 | MS.gene034947:CDS |
| GTGGCTACGTCCAGCAGTGG+AGG | 0.596879 | 1.3:-44414422 | MS.gene034947:CDS |
| AATCCATTCGACGATGACGC+TGG | 0.603457 | 1.3:-44416165 | MS.gene034947:CDS |
| GGTAACGGTGGAGGAAGCGC+CGG | 0.603519 | 1.3:-44416048 | MS.gene034947:CDS |
| GAGGTGCGAAGGTTTGGTGG+AGG | 0.605729 | 1.3:+44416313 | None:intergenic |
| TTCAGGGAGCTAGTGTCTAG+AGG | 0.610453 | 1.3:-44412564 | MS.gene034947:CDS |
| CAGGGCTGACATATCCATAG+AGG | 0.610631 | 1.3:+44412536 | None:intergenic |
| CTGAACCGTACAATAGGCAA+CGG | 0.610750 | 1.3:-44412920 | MS.gene034947:CDS |
| AATAGCTTCCCGTCTTGGTG+TGG | 0.611957 | 1.3:-44414107 | MS.gene034947:CDS |
| TGAGAATCAATCGAAGAGTG+TGG | 0.613705 | 1.3:-44415869 | MS.gene034947:CDS |
| AGAAGTGGTGGTGAGAGTGG+TGG | 0.614183 | 1.3:+44416277 | None:intergenic |
| TGTTCCATCTGCTTAAACCA+AGG | 0.614998 | 1.3:+44415754 | None:intergenic |
| GGAGACGACACCGATGACTA+CGG | 0.620045 | 1.3:-44416189 | MS.gene034947:CDS |
| GGAGTGGCTACGTCCAGCAG+TGG | 0.623352 | 1.3:-44414425 | MS.gene034947:CDS |
| GAATGGATTACCGTAGTCAT+CGG | 0.625254 | 1.3:+44416179 | None:intergenic |
| AATTTACTCAGCTGAATCGA+GGG | 0.625957 | 1.3:-44415945 | MS.gene034947:CDS |
| AAATTTACTCAGCTGAATCG+AGG | 0.626415 | 1.3:-44415946 | MS.gene034947:CDS |
| CCGAAGAGCAGCAGATATGT+CGG | 0.627184 | 1.3:+44412818 | None:intergenic |
| GGACTGAAGCTGTGGAGAAG+TGG | 0.627526 | 1.3:+44416262 | None:intergenic |
| TCTAGACACTAGCTCCCTGA+AGG | 0.629448 | 1.3:+44412566 | None:intergenic |
| ACTGTACCTCCACACCAAGA+CGG | 0.637094 | 1.3:+44414098 | None:intergenic |
| TTTGGATTGGACTGAAGCTG+TGG | 0.637149 | 1.3:+44416254 | None:intergenic |
| CCTGTTTCTAGCGGTAACGG+TGG | 0.645172 | 1.3:-44416060 | MS.gene034947:CDS |
| GCTTTGTGTGGAGAACAAGT+TGG | 0.647871 | 1.3:-44412100 | MS.gene034947:CDS |
| CTGAAGCTGTGGAGAAGTGG+TGG | 0.656134 | 1.3:+44416265 | None:intergenic |
| TTCCTGCTTCCATTTCACCT+AGG | 0.659097 | 1.3:-44415678 | MS.gene034947:CDS |
| CGGTCAAAACCTGTTTCTAG+CGG | 0.664935 | 1.3:-44416069 | MS.gene034947:CDS |
| GGTGGTTGTTATCGTCGTGG+AGG | 0.671957 | 1.3:+44416352 | None:intergenic |
| CATTGTCAAACCTTAGATGG+CGG | 0.680970 | 1.3:-44414373 | MS.gene034947:CDS |
| TGTGGAACAGTGTAAGAACA+AGG | 0.689866 | 1.3:-44415851 | MS.gene034947:CDS |
| AGTGGTGGTTGTTATCGTCG+TGG | 0.691782 | 1.3:+44416349 | None:intergenic |
| GTCAGCCCTGACATTCTGCG+AGG | 0.718203 | 1.3:-44412523 | MS.gene034947:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTAGAAAATTATATAGAA+AGG | + | chr1.3:44415683-44415702 | None:intergenic | 10.0% |
| !! | TAAAGATTAAAAAGATCTTA+TGG | + | chr1.3:44415328-44415347 | None:intergenic | 15.0% |
| !! | TGTGTTTACTTTATTAATTA+TGG | - | chr1.3:44413200-44413219 | MS.gene034947:intron | 15.0% |
| !! | TTCAATGTTTATTCTATTTA+TGG | - | chr1.3:44414574-44414593 | MS.gene034947:intron | 15.0% |
| !!! | AAACTTAAAATTTTCAGATT+CGG | + | chr1.3:44412971-44412990 | None:intergenic | 15.0% |
| !!! | ATACGTTTAGATTTTATTTT+AGG | - | chr1.3:44412906-44412925 | MS.gene034947:CDS | 15.0% |
| !!! | CTCATTTTAAAAAAGAAAAT+TGG | - | chr1.3:44414869-44414888 | MS.gene034947:intron | 15.0% |
| !!! | GAAAATTTTAAGTTTTGTTT+AGG | - | chr1.3:44412976-44412995 | MS.gene034947:CDS | 15.0% |
| !!! | TAAGATCTTTTTAATCTTTA+TGG | - | chr1.3:44415328-44415347 | MS.gene034947:intron | 15.0% |
| !!! | TACGTTTAGATTTTATTTTA+GGG | - | chr1.3:44412907-44412926 | MS.gene034947:CDS | 15.0% |
| !! | AATAAATTTAAGCAAGCAAA+TGG | + | chr1.3:44414292-44414311 | None:intergenic | 20.0% |
| !! | AATATTACAAGAATAAGAAC+AGG | + | chr1.3:44413970-44413989 | None:intergenic | 20.0% |
| !! | ATATTACAAGAATAAGAACA+GGG | + | chr1.3:44413969-44413988 | None:intergenic | 20.0% |
| !! | ATGCGATATTAGTAAAAATA+CGG | + | chr1.3:44413674-44413693 | None:intergenic | 20.0% |
| !!! | AATTGGAAATTTGAACTTTT+AGG | - | chr1.3:44414886-44414905 | MS.gene034947:intron | 20.0% |
| !!! | ACTTTATTTTGAACTTGATT+TGG | - | chr1.3:44413491-44413510 | MS.gene034947:intron | 20.0% |
| !!! | AGTTGTAGTTTTTAATCTAT+TGG | - | chr1.3:44416310-44416329 | MS.gene034947:CDS | 20.0% |
| !!! | TAATTTGTGAACTTGAAATA+TGG | + | chr1.3:44413817-44413836 | None:intergenic | 20.0% |
| !!! | TATATTATTTCTTTTCCAAC+TGG | - | chr1.3:44414973-44414992 | MS.gene034947:intron | 20.0% |
| !!! | TGCTAGTATTTTCTTTTATA+TGG | - | chr1.3:44416169-44416188 | MS.gene034947:CDS | 20.0% |
| !!! | TTACGACAATGATTTATTTT+TGG | - | chr1.3:44415127-44415146 | MS.gene034947:intron | 20.0% |
| !!! | TTCATGTATTTTCTTTTTGA+TGG | + | chr1.3:44414621-44414640 | None:intergenic | 20.0% |
| !!! | TTTAGATTTTATTTTAGGGT+AGG | - | chr1.3:44412911-44412930 | MS.gene034947:CDS | 20.0% |
| !!! | TTTGCTGTTTTTGTTTTAAT+TGG | - | chr1.3:44413008-44413027 | MS.gene034947:CDS | 20.0% |
| ! | AAAGGAAGAGTTGTTATATT+TGG | - | chr1.3:44415574-44415593 | MS.gene034947:intron | 25.0% |
| ! | ATCTAATTGAATAACGAACA+AGG | + | chr1.3:44413305-44413324 | None:intergenic | 25.0% |
| ! | ATGAATATCCTGATTACAAA+TGG | - | chr1.3:44414662-44414681 | MS.gene034947:intron | 25.0% |
| ! | ATTGATGTGCTAAAAAAACA+AGG | - | chr1.3:44413064-44413083 | MS.gene034947:intron | 25.0% |
| ! | ATTTGTAATCAGGATATTCA+TGG | + | chr1.3:44414663-44414682 | None:intergenic | 25.0% |
| ! | CAAAATCAACTTTGTATAAC+AGG | - | chr1.3:44413638-44413657 | MS.gene034947:intron | 25.0% |
| ! | CAAGCATCAAAAATTCATTT+AGG | + | chr1.3:44415204-44415223 | None:intergenic | 25.0% |
| ! | CACTCCATATCTAAAAATAA+AGG | + | chr1.3:44414014-44414033 | None:intergenic | 25.0% |
| ! | CAGTTTATGAAAATAACCTT+GGG | + | chr1.3:44416207-44416226 | None:intergenic | 25.0% |
| ! | CATATCTAAAAATAAAGGAG+GGG | + | chr1.3:44414009-44414028 | None:intergenic | 25.0% |
| ! | CCATATCTAAAAATAAAGGA+GGG | + | chr1.3:44414010-44414029 | None:intergenic | 25.0% |
| ! | CTAAGCACTACAAAAATTTA+TGG | + | chr1.3:44416134-44416153 | None:intergenic | 25.0% |
| ! | GAATGACATTCAAACTATAA+TGG | + | chr1.3:44413931-44413950 | None:intergenic | 25.0% |
| ! | GTCTGGTTATATTATATATG+TGG | - | chr1.3:44414206-44414225 | MS.gene034947:intron | 25.0% |
| ! | TAGATATTTAAATATGCGAC+AGG | + | chr1.3:44416099-44416118 | None:intergenic | 25.0% |
| ! | TCAGTTTATGAAAATAACCT+TGG | + | chr1.3:44416208-44416227 | None:intergenic | 25.0% |
| ! | TCCATATCTAAAAATAAAGG+AGG | + | chr1.3:44414011-44414030 | None:intergenic | 25.0% |
| ! | TGTCGCATATTTAAATATCT+AGG | - | chr1.3:44416098-44416117 | MS.gene034947:CDS | 25.0% |
| ! | TTGATGTGCTAAAAAAACAA+GGG | - | chr1.3:44413065-44413084 | MS.gene034947:intron | 25.0% |
| ! | TTGATTTATTTGTATGCTTG+TGG | - | chr1.3:44412831-44412850 | MS.gene034947:CDS | 25.0% |
| ! | TTTGATATGTTAGCAAGTTT+GGG | - | chr1.3:44413426-44413445 | MS.gene034947:intron | 25.0% |
| !! | AACTTCATTTGAAACTAACA+TGG | + | chr1.3:44414324-44414343 | None:intergenic | 25.0% |
| !! | CTGCAACTATATTTCATTTT+AGG | + | chr1.3:44414187-44414206 | None:intergenic | 25.0% |
| !! | CTTTTTACTTGACATGTTTA+AGG | - | chr1.3:44413361-44413380 | MS.gene034947:intron | 25.0% |
| !! | TTCAAGTTCACAAATTACAT+GGG | - | chr1.3:44413820-44413839 | MS.gene034947:intron | 25.0% |
| !! | TTTTGATATGTTAGCAAGTT+TGG | - | chr1.3:44413425-44413444 | MS.gene034947:intron | 25.0% |
| !! | TTTTGATGCTTGAACTTTAT+TGG | - | chr1.3:44415212-44415231 | MS.gene034947:intron | 25.0% |
| !!! | AGAGTTGTTCTAAAAATTAG+TGG | - | chr1.3:44414103-44414122 | MS.gene034947:intron | 25.0% |
| !!! | AGGTTGATAATTTGAAGAAA+AGG | - | chr1.3:44412622-44412641 | MS.gene034947:CDS | 25.0% |
| !!! | CTTTATTTTTAGATATGGAG+TGG | - | chr1.3:44414012-44414031 | MS.gene034947:intron | 25.0% |
| !!! | GAAATTTGAACTTTTAGGTA+GGG | - | chr1.3:44414891-44414910 | MS.gene034947:intron | 25.0% |
| !!! | TGTTCTAAAAATTAGTGGAT+CGG | - | chr1.3:44414108-44414127 | MS.gene034947:CDS | 25.0% |
| !!! | TTATTTTAGGGTAGGTTTTT+TGG | - | chr1.3:44412919-44412938 | MS.gene034947:CDS | 25.0% |
| !!! | TTTCAAGTTCACAAATTACA+TGG | - | chr1.3:44413819-44413838 | MS.gene034947:intron | 25.0% |
| AAAGTAAACACATAAGTCCT+GGG | + | chr1.3:44413192-44413211 | None:intergenic | 30.0% | |
| AATGAAATATAGTTGCAGTC+TGG | - | chr1.3:44414189-44414208 | MS.gene034947:intron | 30.0% | |
| ACTTCTACTTAAACAAAGCT+TGG | - | chr1.3:44413612-44413631 | MS.gene034947:intron | 30.0% | |
| ATAGAAAAGATCGAGAAGAA+TGG | - | chr1.3:44412442-44412461 | MS.gene034947:intron | 30.0% | |
| ATAGTTGTATGTTGAGTGTT+TGG | - | chr1.3:44413453-44413472 | MS.gene034947:intron | 30.0% | |
| CAAATTGGAATTAAGAGCTT+AGG | + | chr1.3:44413848-44413867 | None:intergenic | 30.0% | |
| GAGAGACATAGAATGAATAA+TGG | - | chr1.3:44412654-44412673 | MS.gene034947:CDS | 30.0% | |
| GCTTGCTTAAATTTATTGTC+AGG | - | chr1.3:44414295-44414314 | MS.gene034947:intron | 30.0% | |
| TAAAGTAAACACATAAGTCC+TGG | + | chr1.3:44413193-44413212 | None:intergenic | 30.0% | |
| TAGTTGTATGTTGAGTGTTT+GGG | - | chr1.3:44413454-44413473 | MS.gene034947:intron | 30.0% | |
| TCTTAAATTTGTCAGCATGA+TGG | - | chr1.3:44415417-44415436 | MS.gene034947:intron | 30.0% | |
| TGCTTAAATTTATTGTCAGG+TGG | - | chr1.3:44414298-44414317 | MS.gene034947:intron | 30.0% | |
| TTATGAATAGTCTGCTTCAT+TGG | + | chr1.3:44416252-44416271 | None:intergenic | 30.0% | |
| TTATTTGTATGCTTGTGGAT+TGG | - | chr1.3:44412836-44412855 | MS.gene034947:CDS | 30.0% | |
| TTCAATATGCTGCAAAACAA+AGG | + | chr1.3:44415060-44415079 | None:intergenic | 30.0% | |
| TTGATTGTGTTGTCATTGTT+TGG | - | chr1.3:44413904-44413923 | MS.gene034947:intron | 30.0% | |
| TTTACTTGACATGTTTAAGG+TGG | - | chr1.3:44413364-44413383 | MS.gene034947:intron | 30.0% | |
| TTTATCATCATCAGCAAACT+TGG | + | chr1.3:44412748-44412767 | None:intergenic | 30.0% | |
| ! | AACATTTCAAAAGCTTTGTG+TGG | - | chr1.3:44416341-44416360 | MS.gene034947:CDS | 30.0% |
| ! | ATATGAGATCAGTGTTTTCA+TGG | - | chr1.3:44415265-44415284 | MS.gene034947:intron | 30.0% |
| ! | ATCAACCACATGGATATTTT+TGG | - | chr1.3:44415740-44415759 | MS.gene034947:CDS | 30.0% |
| ! | CAATCAACTTTAGAGAAGAT+GGG | - | chr1.3:44415466-44415485 | MS.gene034947:intron | 30.0% |
| ! | CACTAGGATTTGAAACTATA+TGG | - | chr1.3:44413741-44413760 | MS.gene034947:intron | 30.0% |
| ! | TAAAGTTGATTGAAGCAGTA+AGG | + | chr1.3:44415458-44415477 | None:intergenic | 30.0% |
| ! | TCAATCAACTTTAGAGAAGA+TGG | - | chr1.3:44415465-44415484 | MS.gene034947:intron | 30.0% |
| !! | ATTGCATCTGGTCTTTTTAT+GGG | - | chr1.3:44415980-44415999 | MS.gene034947:CDS | 30.0% |
| !! | GGAAATTTGAACTTTTAGGT+AGG | - | chr1.3:44414890-44414909 | MS.gene034947:intron | 30.0% |
| !! | TATTGCATCTGGTCTTTTTA+TGG | - | chr1.3:44415979-44415998 | MS.gene034947:CDS | 30.0% |
| !!! | CCCTCCTTTATTTTTAGATA+TGG | - | chr1.3:44414007-44414026 | MS.gene034947:intron | 30.0% |
| AAAACAACACACGACAAACA+CGG | + | chr1.3:44413111-44413130 | None:intergenic | 35.0% | |
| AAATTTACTCAGCTGAATCG+AGG | - | chr1.3:44412507-44412526 | MS.gene034947:intron | 35.0% | |
| AACTACTTCGCATTGCAAAT+TGG | + | chr1.3:44413863-44413882 | None:intergenic | 35.0% | |
| AAGCAGATGGAACATATTGT+TGG | - | chr1.3:44412708-44412727 | MS.gene034947:intron | 35.0% | |
| AAGCTTCAGCTAAACTGAAT+AGG | + | chr1.3:44414418-44414437 | None:intergenic | 35.0% | |
| AATATTGACCCTAAGGTTTG+TGG | - | chr1.3:44414154-44414173 | MS.gene034947:intron | 35.0% | |
| AATTTACTCAGCTGAATCGA+GGG | - | chr1.3:44412508-44412527 | MS.gene034947:CDS | 35.0% | |
| ACAAACTTCAGTTTCAATGC+AGG | - | chr1.3:44415504-44415523 | MS.gene034947:intron | 35.0% | |
| ACTACAACTGCACAAAGAAA+TGG | + | chr1.3:44416299-44416318 | None:intergenic | 35.0% | |
| AGCAGATGGAACATATTGTT+GGG | - | chr1.3:44412709-44412728 | MS.gene034947:intron | 35.0% | |
| AGCTTCAGCTAAACTGAATA+GGG | + | chr1.3:44414417-44414436 | None:intergenic | 35.0% | |
| ATAGAACTGCTAGTTGAAGT+TGG | - | chr1.3:44414701-44414720 | MS.gene034947:intron | 35.0% | |
| ATAGTATTGCTTACCAGGAA+TGG | + | chr1.3:44415962-44415981 | None:intergenic | 35.0% | |
| ATATTGACCCTAAGGTTTGT+GGG | - | chr1.3:44414155-44414174 | MS.gene034947:intron | 35.0% | |
| ATGCAATAGTATTGCTTACC+AGG | + | chr1.3:44415967-44415986 | None:intergenic | 35.0% | |
| CATCTTCATGTATTGCACAT+GGG | - | chr1.3:44415240-44415259 | MS.gene034947:intron | 35.0% | |
| CATGTGCAATACATGAAGAT+GGG | + | chr1.3:44415241-44415260 | None:intergenic | 35.0% | |
| CGTATGGATTCAACAACAAA+CGG | - | chr1.3:44412364-44412383 | MS.gene034947:intron | 35.0% | |
| CTCTTTCTTTGTGATACTTC+AGG | - | chr1.3:44414440-44414459 | MS.gene034947:intron | 35.0% | |
| GAAGTGAGTGATTGATGTTT+GGG | - | chr1.3:44413528-44413547 | MS.gene034947:intron | 35.0% | |
| GAATCTAAGAGGAAGAGATT+GGG | - | chr1.3:44412530-44412549 | MS.gene034947:CDS | 35.0% | |
| GATTACAAATGGATGATCCA+AGG | - | chr1.3:44414673-44414692 | MS.gene034947:intron | 35.0% | |
| GCTGACAAATTTAAGAACTC+AGG | + | chr1.3:44415413-44415432 | None:intergenic | 35.0% | |
| GGAAAGAGTAATAGATGATG+CGG | + | chr1.3:44415715-44415734 | None:intergenic | 35.0% | |
| GGAAGAGTTGTTATATTTGG+TGG | - | chr1.3:44415577-44415596 | MS.gene034947:intron | 35.0% | |
| GTAAGCAATACTATTGCATC+TGG | - | chr1.3:44415968-44415987 | MS.gene034947:CDS | 35.0% | |
| GTGTGTATATTTCTTCTCTG+TGG | + | chr1.3:44413261-44413280 | None:intergenic | 35.0% | |
| TAGAACTGCTAGTTGAAGTT+GGG | - | chr1.3:44414702-44414721 | MS.gene034947:intron | 35.0% | |
| TCTAAAAATAAAGGAGGGGA+AGG | + | chr1.3:44414005-44414024 | None:intergenic | 35.0% | |
| TGAAGTGAGTGATTGATGTT+TGG | - | chr1.3:44413527-44413546 | MS.gene034947:intron | 35.0% | |
| TGGATCATCCATTTGTAATC+AGG | + | chr1.3:44414673-44414692 | None:intergenic | 35.0% | |
| TGTAGAATCTTAGCAATGCA+TGG | - | chr1.3:44413394-44413413 | MS.gene034947:intron | 35.0% | |
| TGTTTAAGTAGAAGTGAGAG+TGG | + | chr1.3:44413607-44413626 | None:intergenic | 35.0% | |
| TTAAACCTCTTAGATTGCCT+AGG | + | chr1.3:44412795-44412814 | None:intergenic | 35.0% | |
| ! | AAATATCCATGTGGTTGATG+TGG | + | chr1.3:44415739-44415758 | None:intergenic | 35.0% |
| ! | AAGCATTGTCAAACCTTAGA+TGG | - | chr1.3:44414077-44414096 | MS.gene034947:intron | 35.0% |
| ! | AATATCCATGTGGTTGATGT+GGG | + | chr1.3:44415738-44415757 | None:intergenic | 35.0% |
| ! | AGTTCTCATGATTTTCCTCT+AGG | - | chr1.3:44414375-44414394 | MS.gene034947:CDS | 35.0% |
| ! | ATGGAAGTTTTTGTAACCCA+AGG | - | chr1.3:44416188-44416207 | MS.gene034947:CDS | 35.0% |
| ! | CTGAAGTATCACAAAGAAAG+AGG | + | chr1.3:44414442-44414461 | None:intergenic | 35.0% |
| ! | CTTATTTGAAATCCACTGCA+AGG | + | chr1.3:44416075-44416094 | None:intergenic | 35.0% |
| ! | GTTCTCATGATTTTCCTCTA+GGG | - | chr1.3:44414376-44414395 | MS.gene034947:CDS | 35.0% |
| ! | GTTGTTATATTTGGTGGCAT+TGG | - | chr1.3:44415583-44415602 | MS.gene034947:intron | 35.0% |
| ! | GTTTACTTTGAAAGCAAGCT+TGG | - | chr1.3:44413554-44413573 | MS.gene034947:intron | 35.0% |
| ! | GTTTTTAATCTATTGGCACC+CGG | - | chr1.3:44416317-44416336 | MS.gene034947:CDS | 35.0% |
| ! | TAGCAGTTCTATGTTTTCCT+TGG | + | chr1.3:44414693-44414712 | None:intergenic | 35.0% |
| ! | TCCTAGTGTGTTCAGTTTTA+CGG | + | chr1.3:44413729-44413748 | None:intergenic | 35.0% |
| ! | TCTAAGGTTTGACAATGCTT+TGG | + | chr1.3:44414077-44414096 | None:intergenic | 35.0% |
| ! | TTTTTAATCTATTGGCACCC+GGG | - | chr1.3:44416318-44416337 | MS.gene034947:CDS | 35.0% |
| !! | AACTTTGACTTGTATGGGAT+TGG | - | chr1.3:44414781-44414800 | MS.gene034947:intron | 35.0% |
| !! | CAATGCGAAGTAGTTTTACT+TGG | - | chr1.3:44413868-44413887 | MS.gene034947:intron | 35.0% |
| !! | GAGTGAACTTTGACTTGTAT+GGG | - | chr1.3:44414776-44414795 | MS.gene034947:intron | 35.0% |
| !! | TTGCATCTGGTCTTTTTATG+GGG | - | chr1.3:44415981-44416000 | MS.gene034947:CDS | 35.0% |
| !!! | AAAGCTTTTGAAATGTTCCC+GGG | + | chr1.3:44416338-44416357 | None:intergenic | 35.0% |
| !!! | ATATTTGGTGGCATTGGTTT+TGG | - | chr1.3:44415589-44415608 | MS.gene034947:intron | 35.0% |
| !!! | CAAAGCTTTTGAAATGTTCC+CGG | + | chr1.3:44416339-44416358 | None:intergenic | 35.0% |
| AACCTTAGGGTCAATATTGC+AGG | + | chr1.3:44414152-44414171 | None:intergenic | 40.0% | |
| AAGAGTAATAGATGATGCGG+AGG | + | chr1.3:44415712-44415731 | None:intergenic | 40.0% | |
| ACAACTGCACAAAGAAATGG+TGG | + | chr1.3:44416296-44416315 | None:intergenic | 40.0% | |
| AGAGTAATAGATGATGCGGA+GGG | + | chr1.3:44415711-44415730 | None:intergenic | 40.0% | |
| AGATGTACTGCATACCAAGT+TGG | - | chr1.3:44414531-44414550 | MS.gene034947:intron | 40.0% | |
| AGCAAAATACAAGACCCTAG+AGG | + | chr1.3:44414393-44414412 | None:intergenic | 40.0% | |
| AGGGTCAATATTGCAGGTAT+CGG | + | chr1.3:44414146-44414165 | None:intergenic | 40.0% | |
| ATCTTAGCAATGCATGGCAT+AGG | - | chr1.3:44413400-44413419 | MS.gene034947:intron | 40.0% | |
| ATTTCTTCTGTGGAGATGCA+TGG | - | chr1.3:44414487-44414506 | MS.gene034947:intron | 40.0% | |
| CAAACCCGGAAAAGAAGTAA+GGG | + | chr1.3:44413167-44413186 | None:intergenic | 40.0% | |
| CATTGTCAAACCTTAGATGG+CGG | - | chr1.3:44414080-44414099 | MS.gene034947:intron | 40.0% | |
| CCATCTTCATGTATTGCACA+TGG | - | chr1.3:44415239-44415258 | MS.gene034947:intron | 40.0% | |
| CCATGTGCAATACATGAAGA+TGG | + | chr1.3:44415242-44415261 | None:intergenic | 40.0% | |
| CTTAGATTGCCTAGGTGAAA+TGG | + | chr1.3:44412787-44412806 | None:intergenic | 40.0% | |
| CTTCAGGTAGCAATTGTTGT+TGG | - | chr1.3:44414456-44414475 | MS.gene034947:intron | 40.0% | |
| GAACTACCAGGAGGTTAAAT+TGG | - | chr1.3:44414936-44414955 | MS.gene034947:intron | 40.0% | |
| GATGTACTGCATACCAAGTT+GGG | - | chr1.3:44414532-44414551 | MS.gene034947:intron | 40.0% | |
| GCTTGCCAAAAATATCCATG+TGG | + | chr1.3:44415748-44415767 | None:intergenic | 40.0% | |
| GGAATCTAAGAGGAAGAGAT+TGG | - | chr1.3:44412529-44412548 | MS.gene034947:CDS | 40.0% | |
| GTACATTCCCACAAACCTTA+GGG | + | chr1.3:44414165-44414184 | None:intergenic | 40.0% | |
| GTGATTAACCTTACCCAACT+TGG | + | chr1.3:44414548-44414567 | None:intergenic | 40.0% | |
| GTGCTAAAAAAACAAGGGAC+CGG | - | chr1.3:44413070-44413089 | MS.gene034947:intron | 40.0% | |
| GTTGCATTTCTGCTAGTCAT+TGG | - | chr1.3:44412676-44412695 | MS.gene034947:intron | 40.0% | |
| TACCTGCAATATTGACCCTA+AGG | - | chr1.3:44414147-44414166 | MS.gene034947:intron | 40.0% | |
| TATTGTTGGGAATTCGCTTC+CGG | - | chr1.3:44412722-44412741 | MS.gene034947:intron | 40.0% | |
| TCAAACCCGGAAAAGAAGTA+AGG | + | chr1.3:44413168-44413187 | None:intergenic | 40.0% | |
| TCCGTAAAACTGAACACACT+AGG | - | chr1.3:44413725-44413744 | MS.gene034947:intron | 40.0% | |
| TGAGAATCAATCGAAGAGTG+TGG | - | chr1.3:44412584-44412603 | MS.gene034947:CDS | 40.0% | |
| TGTGGAACAGTGTAAGAACA+AGG | - | chr1.3:44412602-44412621 | MS.gene034947:CDS | 40.0% | |
| TGTTCCATCTGCTTAAACCA+AGG | + | chr1.3:44412702-44412721 | None:intergenic | 40.0% | |
| TTGGGAAGAAGTAGCTTCAA+TGG | - | chr1.3:44412548-44412567 | MS.gene034947:CDS | 40.0% | |
| TTTCACCTAGGCAATCTAAG+AGG | - | chr1.3:44412787-44412806 | MS.gene034947:intron | 40.0% | |
| TTTCGAGCACATATCCTTCA+GGG | - | chr1.3:44415873-44415892 | MS.gene034947:CDS | 40.0% | |
| TTTCTTCTGTGGAGATGCAT+GGG | - | chr1.3:44414488-44414507 | MS.gene034947:intron | 40.0% | |
| ! | ATATCCATGTGGTTGATGTG+GGG | + | chr1.3:44415737-44415756 | None:intergenic | 40.0% |
| ! | ATGCTCCCTTACTTCTTTTC+CGG | - | chr1.3:44413159-44413178 | MS.gene034947:intron | 40.0% |
| ! | ATTTTCCTCGCAGAATGTCA+GGG | + | chr1.3:44415938-44415957 | None:intergenic | 40.0% |
| ! | GATATGTCGGTTGAGAAAAG+TGG | + | chr1.3:44415625-44415644 | None:intergenic | 40.0% |
| ! | GGAGCATTTGATCTGCTAAA+AGG | + | chr1.3:44413146-44413165 | None:intergenic | 40.0% |
| ! | TAGTGTGTTCAGTTTTACGG+AGG | + | chr1.3:44413726-44413745 | None:intergenic | 40.0% |
| ! | TTGACAATGCTTTGGACTTC+AGG | + | chr1.3:44414069-44414088 | None:intergenic | 40.0% |
| !! | AAACCTGTTTCTAGCGGTAA+CGG | - | chr1.3:44412390-44412409 | MS.gene034947:intron | 40.0% |
| !! | ATAGCGACTATCGATTCAGA+TGG | - | chr1.3:44413697-44413716 | MS.gene034947:intron | 40.0% |
| !! | GAATGGATTACCGTAGTCAT+CGG | + | chr1.3:44412277-44412296 | None:intergenic | 40.0% |
| !! | GCGAAGTAGTTTTACTTGGA+TGG | - | chr1.3:44413872-44413891 | MS.gene034947:intron | 40.0% |
| !! | GGAGTGAACTTTGACTTGTA+TGG | - | chr1.3:44414775-44414794 | MS.gene034947:intron | 40.0% |
| !! | GTAGTTTTACTTGGATGGAG+TGG | - | chr1.3:44413877-44413896 | MS.gene034947:intron | 40.0% |
| !! | TGCATCTGGTCTTTTTATGG+GGG | - | chr1.3:44415982-44416001 | MS.gene034947:CDS | 40.0% |
| !!! | TCTTTTTATGGGGGTGTTTC+AGG | - | chr1.3:44415991-44416010 | MS.gene034947:CDS | 40.0% |
| AACTGGATGTGCTTTGCTGA+TGG | - | chr1.3:44414990-44415009 | MS.gene034947:intron | 45.0% | |
| ACAGTGCCAATTTAACCTCC+TGG | + | chr1.3:44414945-44414964 | None:intergenic | 45.0% | |
| ACGGTACATCTAACGTTGTC+CGG | + | chr1.3:44413092-44413111 | None:intergenic | 45.0% | |
| ATAAGTCCTGGGTTCAAACC+CGG | + | chr1.3:44413181-44413200 | None:intergenic | 45.0% | |
| ATCAGCAAAGCACATCCAGT+TGG | + | chr1.3:44414991-44415010 | None:intergenic | 45.0% | |
| CTGAACCGTACAATAGGCAA+CGG | - | chr1.3:44415533-44415552 | MS.gene034947:intron | 45.0% | |
| CTGAATCGAGGGAATCTAAG+AGG | - | chr1.3:44412519-44412538 | MS.gene034947:CDS | 45.0% | |
| CTTTCGAGCACATATCCTTC+AGG | - | chr1.3:44415872-44415891 | MS.gene034947:CDS | 45.0% | |
| GCTAGTTGAAGTTGGGATGT+GGG | - | chr1.3:44414709-44414728 | MS.gene034947:intron | 45.0% | |
| GCTTTGTGTGGAGAACAAGT+TGG | - | chr1.3:44416353-44416372 | MS.gene034947:CDS | 45.0% | |
| GGAGGCAGTTGCTATCTAAT+TGG | + | chr1.3:44414812-44414831 | None:intergenic | 45.0% | |
| GGAGGTCGTAATTTCTTCTG+TGG | - | chr1.3:44414477-44414496 | MS.gene034947:intron | 45.0% | |
| GGCACACTTATTGACCAAAC+TGG | - | chr1.3:44416374-44416393 | MS.gene034947:CDS | 45.0% | |
| GGTACATTCCCACAAACCTT+AGG | + | chr1.3:44414166-44414185 | None:intergenic | 45.0% | |
| TCATCATCAGCAAACTTGGC+CGG | + | chr1.3:44412744-44412763 | None:intergenic | 45.0% | |
| TCCTTTCTCAAGATGCCTGA+TGG | + | chr1.3:44415560-44415579 | None:intergenic | 45.0% | |
| TCTATACTCTGCTCCTACTC+CGG | + | chr1.3:44412427-44412446 | None:intergenic | 45.0% | |
| TGAACCGTACAATAGGCAAC+GGG | - | chr1.3:44415534-44415553 | MS.gene034947:intron | 45.0% | |
| TGCTAGTTGAAGTTGGGATG+TGG | - | chr1.3:44414708-44414727 | MS.gene034947:intron | 45.0% | |
| TGGATCATTGGAGTGCAAAG+AGG | - | chr1.3:44414834-44414853 | MS.gene034947:intron | 45.0% | |
| TTCCTGCTTCCATTTCACCT+AGG | - | chr1.3:44412775-44412794 | MS.gene034947:intron | 45.0% | |
| TTTAGGTAGGGCTGTACATG+TGG | - | chr1.3:44414903-44414922 | MS.gene034947:intron | 45.0% | |
| TTTGCACTCCAATGATCCAG+AGG | + | chr1.3:44414833-44414852 | None:intergenic | 45.0% | |
| ! | AAGGTCAGAAGTGCAACTCT+AGG | + | chr1.3:44415041-44415060 | None:intergenic | 45.0% |
| ! | ACTGCATACCAAGTTGGGTA+AGG | - | chr1.3:44414537-44414556 | MS.gene034947:intron | 45.0% |
| ! | AGGTGGTGATGTGTTTGGAT+TGG | + | chr1.3:44412215-44412234 | None:intergenic | 45.0% |
| ! | ATTAGTGGATCGGCACTTAC+TGG | - | chr1.3:44414118-44414137 | MS.gene034947:CDS | 45.0% |
| ! | CAGGTAGCAATTGTTGTTGG+AGG | - | chr1.3:44414459-44414478 | MS.gene034947:intron | 45.0% |
| ! | CATTTTCCTCGCAGAATGTC+AGG | + | chr1.3:44415939-44415958 | None:intergenic | 45.0% |
| ! | CGTTTGCTGAACCGTACAAT+AGG | - | chr1.3:44415527-44415546 | MS.gene034947:intron | 45.0% |
| ! | TATCCATGTGGTTGATGTGG+GGG | + | chr1.3:44415736-44415755 | None:intergenic | 45.0% |
| ! | TCAGAAGTGCAACTCTAGGA+AGG | + | chr1.3:44415037-44415056 | None:intergenic | 45.0% |
| ! | TGCTCCCTTACTTCTTTTCC+GGG | - | chr1.3:44413160-44413179 | MS.gene034947:intron | 45.0% |
| ! | TTTCTGCTAGTCATTGGCCT+TGG | - | chr1.3:44412682-44412701 | MS.gene034947:intron | 45.0% |
| ! | TTTGGATTGGACTGAAGCTG+TGG | + | chr1.3:44412202-44412221 | None:intergenic | 45.0% |
| !! | AAAGAGAGCATCTTGGTGAC+AGG | - | chr1.3:44414732-44414751 | MS.gene034947:intron | 45.0% |
| !! | ATGTGGGAAAGAGAGCATCT+TGG | - | chr1.3:44414725-44414744 | MS.gene034947:intron | 45.0% |
| !! | CGGTCAAAACCTGTTTCTAG+CGG | - | chr1.3:44412384-44412403 | MS.gene034947:intron | 45.0% |
| !! | TTGGCCTTGGTTTAAGCAGA+TGG | - | chr1.3:44412695-44412714 | MS.gene034947:intron | 45.0% |
| AACTGCCTCCTCTGGATCAT+TGG | - | chr1.3:44414822-44414841 | MS.gene034947:intron | 50.0% | |
| AATAGCTTCCCGTCTTGGTG+TGG | - | chr1.3:44414346-44414365 | MS.gene034947:CDS | 50.0% | |
| AATCCATTCGACGATGACGC+TGG | - | chr1.3:44412288-44412307 | MS.gene034947:intron | 50.0% | |
| AATGCTCAGGCTGTCCTCAA+AGG | - | chr1.3:44415799-44415818 | MS.gene034947:CDS | 50.0% | |
| ACTGTACCTCCACACCAAGA+CGG | + | chr1.3:44414358-44414377 | None:intergenic | 50.0% | |
| AGTGGTGGTTGTTATCGTCG+TGG | + | chr1.3:44412107-44412126 | None:intergenic | 50.0% | |
| ATGGCCCGTTGCCTATTGTA+CGG | + | chr1.3:44415541-44415560 | None:intergenic | 50.0% | |
| ATGTTGAGTGTTTGGGCGAG+TGG | - | chr1.3:44413461-44413480 | MS.gene034947:intron | 50.0% | |
| CAGGGCTGACATATCCATAG+AGG | + | chr1.3:44415920-44415939 | None:intergenic | 50.0% | |
| CATCGACGTTGGTACCTTTG+AGG | + | chr1.3:44415816-44415835 | None:intergenic | 50.0% | |
| CCGAAGAGCAGCAGATATGT+CGG | + | chr1.3:44415638-44415657 | None:intergenic | 50.0% | |
| CCGACATATCTGCTGCTCTT+CGG | - | chr1.3:44415635-44415654 | MS.gene034947:intron | 50.0% | |
| CGACATATCTGCTGCTCTTC+GGG | - | chr1.3:44415636-44415655 | MS.gene034947:intron | 50.0% | |
| CTGCTCTGCAGTTAATGCTC+AGG | - | chr1.3:44415786-44415805 | MS.gene034947:CDS | 50.0% | |
| GAACAACTCTCCGCCATCTA+AGG | + | chr1.3:44414093-44414112 | None:intergenic | 50.0% | |
| GATGCATGGGTAACTGCAAC+TGG | - | chr1.3:44414501-44414520 | MS.gene034947:intron | 50.0% | |
| GCCATCAGGCATCTTGAGAA+AGG | - | chr1.3:44415556-44415575 | MS.gene034947:intron | 50.0% | |
| GTCATATACGCCATCGACGT+TGG | + | chr1.3:44415827-44415846 | None:intergenic | 50.0% | |
| GTTGCAATAGCTTCCCGTCT+TGG | - | chr1.3:44414341-44414360 | MS.gene034947:CDS | 50.0% | |
| GTTTACTTGACCTCCACTGC+TGG | + | chr1.3:44414044-44414063 | None:intergenic | 50.0% | |
| TAGATAGCAACTGCCTCCTC+TGG | - | chr1.3:44414814-44414833 | MS.gene034947:intron | 50.0% | |
| TCTAGACACTAGCTCCCTGA+AGG | + | chr1.3:44415890-44415909 | None:intergenic | 50.0% | |
| TGCCTAGGTGAAATGGAAGC+AGG | + | chr1.3:44412780-44412799 | None:intergenic | 50.0% | |
| TGCGAGGAAAATGCCATTCC+TGG | - | chr1.3:44415946-44415965 | MS.gene034947:CDS | 50.0% | |
| TGTGATGCAACGACGTCGTA+TGG | - | chr1.3:44412348-44412367 | MS.gene034947:intron | 50.0% | |
| TTCAGGGAGCTAGTGTCTAG+AGG | - | chr1.3:44415889-44415908 | MS.gene034947:CDS | 50.0% | |
| TTTCCCCCACATCAACCACA+TGG | - | chr1.3:44415730-44415749 | MS.gene034947:CDS | 50.0% | |
| ! | TCTTTTCCGGGTTTGAACCC+AGG | - | chr1.3:44413172-44413191 | MS.gene034947:intron | 50.0% |
| !! | CTCAAAGGTACCAACGTCGA+TGG | - | chr1.3:44415814-44415833 | MS.gene034947:CDS | 50.0% |
| !! | GTCTAGAGGTGTCACCTCTA+TGG | - | chr1.3:44415903-44415922 | MS.gene034947:CDS | 50.0% |
| ACAATAGGCAACGGGCCATC+AGG | - | chr1.3:44415542-44415561 | MS.gene034947:intron | 55.0% | |
| AGGGCTGTACATGTGGAGTG+AGG | - | chr1.3:44414910-44414929 | MS.gene034947:intron | 55.0% | |
| CAAAGTTCACTCCCCAGCTG+TGG | + | chr1.3:44414768-44414787 | None:intergenic | 55.0% | |
| CCACCGTTACCGCTAGAAAC+AGG | + | chr1.3:44412396-44412415 | None:intergenic | 55.0% | |
| CTACCAGCGTCATCGTCGAA+TGG | + | chr1.3:44412294-44412313 | None:intergenic | 55.0% | |
| CTGAAGCTGTGGAGAAGTGG+TGG | + | chr1.3:44412191-44412210 | None:intergenic | 55.0% | |
| CTGTACCTCCACACCAAGAC+GGG | + | chr1.3:44414357-44414376 | None:intergenic | 55.0% | |
| GCACTCCAATGATCCAGAGG+AGG | + | chr1.3:44414830-44414849 | None:intergenic | 55.0% | |
| GGACTGAAGCTGTGGAGAAG+TGG | + | chr1.3:44412194-44412213 | None:intergenic | 55.0% | |
| GGAGACGACACCGATGACTA+CGG | - | chr1.3:44412264-44412283 | MS.gene034947:intron | 55.0% | |
| GGAGTGAGGTCAGAACTACC+AGG | - | chr1.3:44414924-44414943 | MS.gene034947:intron | 55.0% | |
| GGTGGTTGTTATCGTCGTGG+AGG | + | chr1.3:44412104-44412123 | None:intergenic | 55.0% | |
| GTGAGGTCAGAACTACCAGG+AGG | - | chr1.3:44414927-44414946 | MS.gene034947:intron | 55.0% | |
| ! | AGAAGTGGTGGTGAGAGTGG+TGG | + | chr1.3:44412179-44412198 | None:intergenic | 55.0% |
| ! | AGCATCTTGGTGACAGGCCA+GGG | - | chr1.3:44414738-44414757 | MS.gene034947:intron | 55.0% |
| ! | GACGGAGGTGGTGATGTGTT+TGG | + | chr1.3:44412220-44412239 | None:intergenic | 55.0% |
| ! | TGGAGAAGTGGTGGTGAGAG+TGG | + | chr1.3:44412182-44412201 | None:intergenic | 55.0% |
| !! | CCTGTTTCTAGCGGTAACGG+TGG | - | chr1.3:44412393-44412412 | MS.gene034947:intron | 55.0% |
| !! | GTTTCTAGCGGTAACGGTGG+AGG | - | chr1.3:44412396-44412415 | MS.gene034947:intron | 55.0% |
| !!! | GGTGGCATTGGTTTTGGTGC+TGG | - | chr1.3:44415595-44415614 | MS.gene034947:intron | 55.0% |
| GAGAGTGGTGGTTGTGGTGG+TGG | + | chr1.3:44412167-44412186 | None:intergenic | 60.0% | |
| GCTGCTCTTCGGGCTTCAGA+GGG | - | chr1.3:44415646-44415665 | MS.gene034947:intron | 60.0% | |
| GGTGAGAGTGGTGGTTGTGG+TGG | + | chr1.3:44412170-44412189 | None:intergenic | 60.0% | |
| GGTGAGGTGCGAAGGTTTGG+TGG | + | chr1.3:44412146-44412165 | None:intergenic | 60.0% | |
| GGTGGTGAGAGTGGTGGTTG+TGG | + | chr1.3:44412116-44412135 | None:intergenic | 60.0% | |
| GGTGGTGAGGTGCGAAGGTT+TGG | + | chr1.3:44412149-44412168 | None:intergenic | 60.0% | |
| GTCAGCCCTGACATTCTGCG+AGG | - | chr1.3:44415930-44415949 | MS.gene034947:CDS | 60.0% | |
| TGCTGCTCTTCGGGCTTCAG+AGG | - | chr1.3:44415645-44415664 | MS.gene034947:intron | 60.0% | |
| ! | AGCTTCCCGTCTTGGTGTGG+AGG | - | chr1.3:44414349-44414368 | MS.gene034947:CDS | 60.0% |
| ! | GAGCATCTTGGTGACAGGCC+AGG | - | chr1.3:44414737-44414756 | MS.gene034947:intron | 60.0% |
| ! | TCTTGGTGACAGGCCAGGGA+AGG | - | chr1.3:44414742-44414761 | MS.gene034947:intron | 60.0% |
| !! | AGGTTTGGTGGAGGTGGTGG+TGG | + | chr1.3:44412134-44412153 | None:intergenic | 60.0% |
| !! | CGAAGGTTTGGTGGAGGTGG+TGG | + | chr1.3:44412137-44412156 | None:intergenic | 60.0% |
| !! | GAGGTGCGAAGGTTTGGTGG+AGG | + | chr1.3:44412143-44412162 | None:intergenic | 60.0% |
| !! | GTGCGAAGGTTTGGTGGAGG+TGG | + | chr1.3:44412140-44412159 | None:intergenic | 60.0% |
| !! | TGGTGGTTGTGGTGGTGGTG+AGG | + | chr1.3:44412162-44412181 | None:intergenic | 60.0% |
| GGAGTGGCTACGTCCAGCAG+TGG | - | chr1.3:44414028-44414047 | MS.gene034947:intron | 65.0% | |
| GTGGCTACGTCCAGCAGTGG+AGG | - | chr1.3:44414031-44414050 | MS.gene034947:intron | 65.0% | |
| ! | GGTAACGGTGGAGGAAGCGC+CGG | - | chr1.3:44412405-44412424 | MS.gene034947:intron | 65.0% |
| ! | GGTGTCGTCTCCGTCGTCGT+CGG | + | chr1.3:44412256-44412275 | None:intergenic | 65.0% |
| !! | GGAGGTGGTGGTGGTGAGAG+TGG | + | chr1.3:44412125-44412144 | None:intergenic | 65.0% |
| !! | GGTGGTGGTGGTGAGAGTGG+TGG | + | chr1.3:44412122-44412141 | None:intergenic | 65.0% |
| !! | GTGGTGGTGGTGAGGTGCGA+AGG | + | chr1.3:44412154-44412173 | None:intergenic | 65.0% |
| AGGCCAGGGAAGGCCACAGC+TGG | - | chr1.3:44414752-44414771 | MS.gene034947:intron | 70.0% | |
| GCCAGGGAAGGCCACAGCTG+GGG | - | chr1.3:44414754-44414773 | MS.gene034947:intron | 70.0% | |
| GGCCAGGGAAGGCCACAGCT+GGG | - | chr1.3:44414753-44414772 | MS.gene034947:intron | 70.0% | |
| GTCTCCGTCGTCGTCGGCGA+CGG | + | chr1.3:44412250-44412269 | None:intergenic | 70.0% | |
| TCCCCAGCTGTGGCCTTCCC+TGG | + | chr1.3:44414758-44414777 | None:intergenic | 70.0% | |
| !! | GGTGGAGGAAGCGCCGGAGT+AGG | - | chr1.3:44412411-44412430 | MS.gene034947:intron | 70.0% |
| TCCGTCGTCGTCGGCGACGG+CGG | + | chr1.3:44412247-44412266 | None:intergenic | 75.0% | |
| ! | GACGGCGGCGGAGACGGAGG+TGG | + | chr1.3:44412232-44412251 | None:intergenic | 80.0% |
| ! | GCCGCCGTCGCCGACGACGA+CGG | - | chr1.3:44412243-44412262 | MS.gene034947:intron | 80.0% |
| ! | GTCGGCGACGGCGGCGGAGA+CGG | + | chr1.3:44412238-44412257 | None:intergenic | 80.0% |
| ! | GTCGTCGTCGGCGACGGCGG+CGG | + | chr1.3:44412244-44412263 | None:intergenic | 80.0% |
| ! | GGCGACGGCGGCGGAGACGG+AGG | + | chr1.3:44412235-44412254 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 44412066 | 44416409 | 44412066 | ID=MS.gene034947 |
| chr1.3 | mRNA | 44412066 | 44416409 | 44412066 | ID=MS.gene034947.t1;Parent=MS.gene034947 |
| chr1.3 | exon | 44415667 | 44416409 | 44415667 | ID=MS.gene034947.t1.exon1;Parent=MS.gene034947.t1 |
| chr1.3 | CDS | 44415667 | 44416409 | 44415667 | ID=cds.MS.gene034947.t1;Parent=MS.gene034947.t1 |
| chr1.3 | exon | 44414307 | 44414451 | 44414307 | ID=MS.gene034947.t1.exon2;Parent=MS.gene034947.t1 |
| chr1.3 | CDS | 44414307 | 44414451 | 44414307 | ID=cds.MS.gene034947.t1;Parent=MS.gene034947.t1 |
| chr1.3 | exon | 44414105 | 44414158 | 44414105 | ID=MS.gene034947.t1.exon3;Parent=MS.gene034947.t1 |
| chr1.3 | CDS | 44414105 | 44414158 | 44414105 | ID=cds.MS.gene034947.t1;Parent=MS.gene034947.t1 |
| chr1.3 | exon | 44413922 | 44414013 | 44413922 | ID=MS.gene034947.t1.exon4;Parent=MS.gene034947.t1 |
| chr1.3 | CDS | 44413922 | 44414013 | 44413922 | ID=cds.MS.gene034947.t1;Parent=MS.gene034947.t1 |
| chr1.3 | exon | 44412808 | 44413043 | 44412808 | ID=MS.gene034947.t1.exon5;Parent=MS.gene034947.t1 |
| chr1.3 | CDS | 44412808 | 44413043 | 44412808 | ID=cds.MS.gene034947.t1;Parent=MS.gene034947.t1 |
| chr1.3 | exon | 44412508 | 44412678 | 44412508 | ID=MS.gene034947.t1.exon6;Parent=MS.gene034947.t1 |
| chr1.3 | CDS | 44412508 | 44412678 | 44412508 | ID=cds.MS.gene034947.t1;Parent=MS.gene034947.t1 |
| chr1.3 | exon | 44412066 | 44412163 | 44412066 | ID=MS.gene034947.t1.exon7;Parent=MS.gene034947.t1 |
| chr1.3 | CDS | 44412066 | 44412163 | 44412066 | ID=cds.MS.gene034947.t1;Parent=MS.gene034947.t1 |
| Gene Sequence |
| Protein sequence |
