Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034949.t1 | XP_003590397.1 | 87.2 | 499 | 48 | 3 | 1 | 497 | 1 | 485 | 6.20E-111 | 411.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034949.t1 | A7UQU9 | 87.2 | 499 | 48 | 3 | 1 | 497 | 1 | 485 | 4.5e-111 | 411.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene034949.t1 | TF | Trihelix |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034949.t1 | MTR_1g061640 | 88.521 | 514 | 39 | 6 | 1 | 512 | 1 | 496 | 0.0 | 788 |
| MS.gene034949.t1 | MTR_7g103390 | 54.970 | 493 | 164 | 10 | 2 | 491 | 1 | 438 | 1.37e-152 | 443 |
| MS.gene034949.t1 | MTR_2g098080 | 37.609 | 460 | 209 | 11 | 40 | 493 | 26 | 413 | 1.95e-81 | 260 |
| MS.gene034949.t1 | MTR_1g098920 | 46.696 | 227 | 100 | 6 | 50 | 261 | 33 | 253 | 6.76e-57 | 196 |
| MS.gene034949.t1 | MTR_1g098920 | 48.193 | 83 | 43 | 0 | 412 | 494 | 365 | 447 | 1.83e-18 | 88.2 |
| MS.gene034949.t1 | MTR_6g035315 | 64.789 | 142 | 48 | 2 | 121 | 261 | 106 | 246 | 9.92e-53 | 187 |
| MS.gene034949.t1 | MTR_6g035315 | 52.000 | 75 | 36 | 0 | 418 | 492 | 368 | 442 | 6.97e-18 | 87.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034949.t1 | AT1G21200 | 36.717 | 463 | 206 | 12 | 64 | 492 | 30 | 439 | 1.06e-72 | 238 |
| MS.gene034949.t1 | AT1G21200 | 36.717 | 463 | 206 | 12 | 64 | 492 | 30 | 439 | 1.06e-72 | 238 |
| MS.gene034949.t1 | AT1G76870 | 48.309 | 207 | 95 | 5 | 55 | 260 | 12 | 207 | 1.12e-56 | 194 |
| MS.gene034949.t1 | AT1G76870 | 48.309 | 207 | 95 | 5 | 55 | 260 | 12 | 207 | 1.12e-56 | 194 |
| MS.gene034949.t1 | AT1G76870 | 48.309 | 207 | 95 | 5 | 55 | 260 | 12 | 207 | 1.12e-56 | 194 |
| MS.gene034949.t1 | AT3G10040 | 57.732 | 97 | 41 | 0 | 402 | 498 | 322 | 418 | 1.73e-31 | 126 |
Find 103 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTCTTCAGCTGGAAAATT+TGG | 0.137646 | 1.3:+44455689 | None:intergenic |
| CTAACTTCATCTTTCATCTT+AGG | 0.178877 | 1.3:+44455317 | None:intergenic |
| TCAAGGGCTATGATGGAAAA+AGG | 0.210514 | 1.3:-44455482 | MS.gene034949:CDS |
| AGTTTAATGATTTGAATAAA+AGG | 0.261559 | 1.3:-44455427 | MS.gene034949:CDS |
| TTGTTGATGATGTTTATTCT+TGG | 0.284251 | 1.3:+44455754 | None:intergenic |
| GGATTGAGAATGTTGAAAAT+TGG | 0.301263 | 1.3:-44455056 | MS.gene034949:CDS |
| TTATTCTTGGATGAAGAAAA+TGG | 0.321285 | 1.3:+44455767 | None:intergenic |
| TCAAGGATTGTTGGATTCAA+TGG | 0.337077 | 1.3:-44455348 | MS.gene034949:CDS |
| ATCACTCCTTCTGGTTTGTT+AGG | 0.338445 | 1.3:-44455989 | MS.gene034949:CDS |
| TTCCACTTCCACCCTCTACT+TGG | 0.350671 | 1.3:+44455198 | None:intergenic |
| TTGAAAAGCAAAGGTTGAAA+TGG | 0.354388 | 1.3:-44454677 | MS.gene034949:CDS |
| GAGAATGGTGTAGGGAGTTT+AGG | 0.360554 | 1.3:-44455095 | MS.gene034949:CDS |
| GCTCTGGTGGTGATCCAAAA+AGG | 0.376950 | 1.3:-44455667 | MS.gene034949:CDS |
| CAGTTGGAGGAACAGAAAAT+AGG | 0.378255 | 1.3:-44454723 | MS.gene034949:CDS |
| GTTGTTGTTGTTGGTGTAAA+GGG | 0.380586 | 1.3:+44455951 | None:intergenic |
| TGTGTCAGTGTCATGATGTT+GGG | 0.383213 | 1.3:+44455835 | None:intergenic |
| AATGGTAAGGCTATTGATAA+TGG | 0.397789 | 1.3:-44455606 | MS.gene034949:CDS |
| AAGATTAGAAAATGAGAGAA+TGG | 0.405714 | 1.3:-44454592 | MS.gene034949:CDS |
| CTAAGATGAAAGATGAAGTT+AGG | 0.406494 | 1.3:-44455316 | MS.gene034949:CDS |
| TAGCAAGAAAGAGAGGGAAA+TGG | 0.407922 | 1.3:-44454643 | MS.gene034949:CDS |
| ATCTGTTTCAAGGGCTATGA+TGG | 0.408066 | 1.3:-44455489 | MS.gene034949:CDS |
| TTAGGTGTTTCAAGAGGAGA+GGG | 0.418284 | 1.3:-44455077 | MS.gene034949:CDS |
| AAGATGGAGGGAAGAGTCCT+TGG | 0.426883 | 1.3:-44454779 | MS.gene034949:CDS |
| CCACCAGAGCTTTCTTCAGC+TGG | 0.434993 | 1.3:+44455680 | None:intergenic |
| TGTAGAGTTGTTGAGAATCA+AGG | 0.440033 | 1.3:-44455365 | MS.gene034949:CDS |
| GTCATCATCATCAACACAAT+TGG | 0.442088 | 1.3:-44454838 | MS.gene034949:CDS |
| CACCATGGCAAAGAATGAAA+TGG | 0.442437 | 1.3:-44455637 | MS.gene034949:CDS |
| GAAAGTGGAAATCTGTTTCA+AGG | 0.446222 | 1.3:-44455499 | MS.gene034949:CDS |
| GATGAGGATGAAGATGAATC+AGG | 0.449858 | 1.3:-44454972 | MS.gene034949:CDS |
| TGTTGAGAATCAAGGATTGT+TGG | 0.454068 | 1.3:-44455357 | MS.gene034949:CDS |
| AAAAGCAATGGATAAGGAAC+AGG | 0.459093 | 1.3:-44454752 | MS.gene034949:CDS |
| TGTTGTTGTTGTTGGTGTAA+AGG | 0.459607 | 1.3:+44455950 | None:intergenic |
| TCTTGAATGATGGAAGCTAA+TGG | 0.466883 | 1.3:-44456025 | None:intergenic |
| TAGTGGGTTGTTACAGAAGA+AGG | 0.473118 | 1.3:-44455522 | MS.gene034949:CDS |
| CACCAAGTAGAGGGTGGAAG+TGG | 0.477622 | 1.3:-44455200 | MS.gene034949:CDS |
| GTCCATTTCATTCTTTGCCA+TGG | 0.478175 | 1.3:+44455635 | None:intergenic |
| TGAAAAGCAAAGGTTGAAAT+GGG | 0.482868 | 1.3:-44454676 | MS.gene034949:CDS |
| GGGAACCCATGTTTCATTGA+AGG | 0.488394 | 1.3:+44455791 | None:intergenic |
| CATTCATCAGAGAATGGTGT+AGG | 0.490758 | 1.3:-44455104 | MS.gene034949:CDS |
| AGTGGTGTGTTTCAAGATGG+AGG | 0.493576 | 1.3:-44454792 | MS.gene034949:CDS |
| TTTCCAGCTGAAGAAAGCTC+TGG | 0.501297 | 1.3:-44455683 | MS.gene034949:CDS |
| AGATGAAGAGGATGAGTCAG+AGG | 0.503353 | 1.3:-44455003 | MS.gene034949:CDS |
| TCAGGAGAAGGTTGTTCAAA+GGG | 0.503478 | 1.3:-44454954 | MS.gene034949:CDS |
| GAGCTAAACTTGAGAATGAA+AGG | 0.504094 | 1.3:-44454617 | MS.gene034949:CDS |
| TTGTGTCAGTGTCATGATGT+TGG | 0.505427 | 1.3:+44455834 | None:intergenic |
| CAAGATGAAGAAGAGAATGA+TGG | 0.507615 | 1.3:-44454909 | MS.gene034949:CDS |
| AGAGGATGATGAAGATGAAG+AGG | 0.511662 | 1.3:-44455015 | MS.gene034949:CDS |
| CATCATCCTTCAATGAAACA+TGG | 0.512661 | 1.3:-44455797 | MS.gene034949:CDS |
| TATTACATTGGTGATGAAGC+TGG | 0.519299 | 1.3:-44455578 | MS.gene034949:CDS |
| CATTTCAGCTTGAAAAGCAA+AGG | 0.520923 | 1.3:-44454686 | MS.gene034949:CDS |
| TCAAGGAAAAGAGCAAGAAA+AGG | 0.523804 | 1.3:-44454879 | MS.gene034949:CDS |
| TGCTGTTGATGTTGATTCTG+AGG | 0.525281 | 1.3:+44455167 | None:intergenic |
| GGGAGTTTAGGTGTTTCAAG+AGG | 0.525348 | 1.3:-44455083 | MS.gene034949:CDS |
| AGAATGTTGAAAATTGGAAG+TGG | 0.527059 | 1.3:-44455050 | MS.gene034949:CDS |
| GTGAATGATATACTTGGTAA+AGG | 0.529083 | 1.3:-44455395 | MS.gene034949:CDS |
| GATGAAGATGAATCAGGAGA+AGG | 0.531217 | 1.3:-44454966 | MS.gene034949:CDS |
| TTTAGGTGTTTCAAGAGGAG+AGG | 0.532646 | 1.3:-44455078 | MS.gene034949:CDS |
| AATGAAATGGACTGATACAA+TGG | 0.534079 | 1.3:-44455624 | MS.gene034949:CDS |
| GGTATAGTAGCAAGAAAGAG+AGG | 0.534687 | 1.3:-44454650 | MS.gene034949:CDS |
| AGTTGTGGTCATGGTGCTGT+TGG | 0.536963 | 1.3:-44455239 | MS.gene034949:CDS |
| AACTTATCTTCACATTGTTG+AGG | 0.538324 | 1.3:+44455446 | None:intergenic |
| TGTTACAGAAGAAGGGAAAG+TGG | 0.544015 | 1.3:-44455514 | MS.gene034949:CDS |
| GGTTGTTCAAAGGGTCAAGT+TGG | 0.544911 | 1.3:-44454945 | MS.gene034949:CDS |
| ATAATGGCTGTTTATTACAT+TGG | 0.545685 | 1.3:-44455590 | MS.gene034949:CDS |
| AGATGGAGGGAAGAGTCCTT+GGG | 0.547861 | 1.3:-44454778 | MS.gene034949:CDS |
| AAGGAACAGGATAATGCAGT+TGG | 0.551721 | 1.3:-44454739 | MS.gene034949:CDS |
| CAAATGAACAATGAAATAAG+TGG | 0.554110 | 1.3:-44454810 | MS.gene034949:CDS |
| AAGTGGAGATGTTGAAGAAG+AGG | 0.561038 | 1.3:-44455033 | MS.gene034949:CDS |
| GAACAGGATAATGCAGTTGG+AGG | 0.568779 | 1.3:-44454736 | MS.gene034949:CDS |
| TATCATAATAGTTGTGGTCA+TGG | 0.573317 | 1.3:-44455248 | MS.gene034949:CDS |
| GTGGTGTGTTTCAAGATGGA+GGG | 0.573587 | 1.3:-44454791 | MS.gene034949:CDS |
| CCAGCTGAAGAAAGCTCTGG+TGG | 0.575821 | 1.3:-44455680 | MS.gene034949:CDS |
| GGGGAGCATAGGAAACAACT+TGG | 0.576375 | 1.3:+44455855 | None:intergenic |
| GGTGATGAAGCTGGTTCTGA+AGG | 0.576679 | 1.3:-44455569 | MS.gene034949:CDS |
| ATCAGGAGAAGGTTGTTCAA+AGG | 0.577261 | 1.3:-44454955 | MS.gene034949:CDS |
| GTCATGATGTTGGGGAGCAT+AGG | 0.579377 | 1.3:+44455844 | None:intergenic |
| GTGTCAGTGTCATGATGTTG+GGG | 0.580760 | 1.3:+44455836 | None:intergenic |
| TCTTGGATGAAGAAAATGGA+GGG | 0.587692 | 1.3:+44455771 | None:intergenic |
| AAGAGAGTGAATGATATACT+TGG | 0.593533 | 1.3:-44455401 | MS.gene034949:CDS |
| AGGAAAAGAGCAAGAAAAGG+AGG | 0.594032 | 1.3:-44454876 | MS.gene034949:CDS |
| AAAGTGGAAATCTGTTTCAA+GGG | 0.595878 | 1.3:-44455498 | MS.gene034949:CDS |
| ATCATCCTTCAATGAAACAT+GGG | 0.597056 | 1.3:-44455796 | MS.gene034949:CDS |
| ATTCATCAGAGAATGGTGTA+GGG | 0.597498 | 1.3:-44455103 | MS.gene034949:CDS |
| CATAGGAAACAACTTGGGAA+TGG | 0.599175 | 1.3:+44455861 | None:intergenic |
| AGAATGATGGAAAATCATCA+AGG | 0.600165 | 1.3:-44454896 | MS.gene034949:CDS |
| AATGGACTGATACAATGGTA+AGG | 0.602489 | 1.3:-44455619 | MS.gene034949:CDS |
| AGTGGGTTGTTACAGAAGAA+GGG | 0.604261 | 1.3:-44455521 | MS.gene034949:CDS |
| TGTTGATGTTGATTCTGAGG+TGG | 0.609062 | 1.3:+44455170 | None:intergenic |
| AGCAAAGGTTGAAATGGGCA+AGG | 0.613121 | 1.3:-44454671 | MS.gene034949:CDS |
| TAACAAACCAGAAGGAGTGA+TGG | 0.616326 | 1.3:+44455991 | None:intergenic |
| CAAACCAGAAGGAGTGATGG+TGG | 0.618353 | 1.3:+44455994 | None:intergenic |
| TAATGTTCAACACCAAGTAG+AGG | 0.618795 | 1.3:-44455210 | MS.gene034949:CDS |
| TTCTTGGATGAAGAAAATGG+AGG | 0.620573 | 1.3:+44455770 | None:intergenic |
| ACTACCAAATTTCATCTAGG+TGG | 0.621605 | 1.3:+44454488 | None:intergenic |
| GTATAGTAGCAAGAAAGAGA+GGG | 0.621792 | 1.3:-44454649 | MS.gene034949:CDS |
| AATGTTCAACACCAAGTAGA+GGG | 0.626977 | 1.3:-44455209 | MS.gene034949:CDS |
| ATAAGTGGTGTGTTTCAAGA+TGG | 0.626979 | 1.3:-44454795 | MS.gene034949:CDS |
| GTGATGAAGCTGGTTCTGAA+GGG | 0.647076 | 1.3:-44455568 | MS.gene034949:CDS |
| TGTGCTTATCATAATAGTTG+TGG | 0.648505 | 1.3:-44455254 | MS.gene034949:CDS |
| GTTCAACACCAAGTAGAGGG+TGG | 0.655493 | 1.3:-44455206 | MS.gene034949:CDS |
| ACTACTCCTAACAAACCAGA+AGG | 0.660583 | 1.3:+44455983 | None:intergenic |
| GGGAGCATAGGAAACAACTT+GGG | 0.683513 | 1.3:+44455856 | None:intergenic |
| TGGGAATGGTGCAAATGATG+AGG | 0.685441 | 1.3:+44455875 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTTTAATGATTTGAATAAA+AGG | - | chr1.3:44455095-44455114 | MS.gene034949:CDS | 15.0% |
| ! | AAGATTAGAAAATGAGAGAA+TGG | - | chr1.3:44455930-44455949 | MS.gene034949:CDS | 25.0% |
| ! | ATAATGGCTGTTTATTACAT+TGG | - | chr1.3:44454932-44454951 | MS.gene034949:CDS | 25.0% |
| ! | CAAATAAGAAAAAGACTAGT+GGG | - | chr1.3:44454984-44455003 | MS.gene034949:CDS | 25.0% |
| ! | CAAATGAACAATGAAATAAG+TGG | - | chr1.3:44455712-44455731 | MS.gene034949:CDS | 25.0% |
| ! | TTATTCTTGGATGAAGAAAA+TGG | + | chr1.3:44454758-44454777 | None:intergenic | 25.0% |
| !! | ATTCTAAGCATCTTTTCTTT+AGG | - | chr1.3:44455239-44455258 | MS.gene034949:CDS | 25.0% |
| !! | TTCTAAGCATCTTTTCTTTA+GGG | - | chr1.3:44455240-44455259 | MS.gene034949:CDS | 25.0% |
| !!! | TTGTTGATGATGTTTATTCT+TGG | + | chr1.3:44454771-44454790 | None:intergenic | 25.0% |
| AAAGTGGAAATCTGTTTCAA+GGG | - | chr1.3:44455024-44455043 | MS.gene034949:CDS | 30.0% | |
| AACTTATCTTCACATTGTTG+AGG | + | chr1.3:44455079-44455098 | None:intergenic | 30.0% | |
| AAGAGAGTGAATGATATACT+TGG | - | chr1.3:44455121-44455140 | MS.gene034949:CDS | 30.0% | |
| AATGGTAAGGCTATTGATAA+TGG | - | chr1.3:44454916-44454935 | MS.gene034949:CDS | 30.0% | |
| AGAATGTTGAAAATTGGAAG+TGG | - | chr1.3:44455472-44455491 | MS.gene034949:CDS | 30.0% | |
| ATCATCCTTCAATGAAACAT+GGG | - | chr1.3:44454726-44454745 | MS.gene034949:CDS | 30.0% | |
| CCAAATAAGAAAAAGACTAG+TGG | - | chr1.3:44454983-44455002 | MS.gene034949:CDS | 30.0% | |
| CTAACTTCATCTTTCATCTT+AGG | + | chr1.3:44455208-44455227 | None:intergenic | 30.0% | |
| CTAAGATGAAAGATGAAGTT+AGG | - | chr1.3:44455206-44455225 | MS.gene034949:CDS | 30.0% | |
| GGATTGAGAATGTTGAAAAT+TGG | - | chr1.3:44455466-44455485 | MS.gene034949:CDS | 30.0% | |
| GTGAATGATATACTTGGTAA+AGG | - | chr1.3:44455127-44455146 | MS.gene034949:CDS | 30.0% | |
| TATCATAATAGTTGTGGTCA+TGG | - | chr1.3:44455274-44455293 | MS.gene034949:CDS | 30.0% | |
| TGAAAAGCAAAGGTTGAAAT+GGG | - | chr1.3:44455846-44455865 | MS.gene034949:CDS | 30.0% | |
| TGTGCTTATCATAATAGTTG+TGG | - | chr1.3:44455268-44455287 | MS.gene034949:CDS | 30.0% | |
| TTGAAAAGCAAAGGTTGAAA+TGG | - | chr1.3:44455845-44455864 | MS.gene034949:CDS | 30.0% | |
| ! | AAGGAGGATTTTCATTTTCA+AGG | - | chr1.3:44455662-44455681 | MS.gene034949:CDS | 30.0% |
| ! | AGAATGATGGAAAATCATCA+AGG | - | chr1.3:44455626-44455645 | MS.gene034949:CDS | 30.0% |
| ! | TGTTGTTGTTGTTGTTGATT+AGG | + | chr1.3:44454620-44454639 | None:intergenic | 30.0% |
| ! | TGTTTTCATTCATCAGAGAA+TGG | - | chr1.3:44455412-44455431 | MS.gene034949:CDS | 30.0% |
| !! | AATGAAATGGACTGATACAA+TGG | - | chr1.3:44454898-44454917 | MS.gene034949:CDS | 30.0% |
| !! | AGAGAATGGTTTTGCTTATT+AGG | - | chr1.3:44455944-44455963 | MS.gene034949:CDS | 30.0% |
| !! | TTTGTTGTTGTTGTTGTTGT+TGG | + | chr1.3:44454583-44454602 | None:intergenic | 30.0% |
| !!! | CCACTAGTCTTTTTCTTATT+TGG | + | chr1.3:44454986-44455005 | None:intergenic | 30.0% |
| AAAAGCAATGGATAAGGAAC+AGG | - | chr1.3:44455770-44455789 | MS.gene034949:CDS | 35.0% | |
| AATGTTCAACACCAAGTAGA+GGG | - | chr1.3:44455313-44455332 | MS.gene034949:CDS | 35.0% | |
| ATAAGTGGTGTGTTTCAAGA+TGG | - | chr1.3:44455727-44455746 | MS.gene034949:CDS | 35.0% | |
| ATTCATCAGAGAATGGTGTA+GGG | - | chr1.3:44455419-44455438 | MS.gene034949:CDS | 35.0% | |
| CAAAAAGGAAGATTTCACCA+TGG | - | chr1.3:44454870-44454889 | MS.gene034949:CDS | 35.0% | |
| CAAGATGAAGAAGAGAATGA+TGG | - | chr1.3:44455613-44455632 | MS.gene034949:CDS | 35.0% | |
| CATCATCCTTCAATGAAACA+TGG | - | chr1.3:44454725-44454744 | MS.gene034949:CDS | 35.0% | |
| CATTTCAGCTTGAAAAGCAA+AGG | - | chr1.3:44455836-44455855 | MS.gene034949:CDS | 35.0% | |
| CTTTCTTCAGCTGGAAAATT+TGG | + | chr1.3:44454836-44454855 | None:intergenic | 35.0% | |
| GAAAGTGGAAATCTGTTTCA+AGG | - | chr1.3:44455023-44455042 | MS.gene034949:CDS | 35.0% | |
| GAGCTAAACTTGAGAATGAA+AGG | - | chr1.3:44455905-44455924 | MS.gene034949:CDS | 35.0% | |
| GTATAGTAGCAAGAAAGAGA+GGG | - | chr1.3:44455873-44455892 | MS.gene034949:CDS | 35.0% | |
| GTCATCATCATCAACACAAT+TGG | - | chr1.3:44455684-44455703 | MS.gene034949:CDS | 35.0% | |
| TAATGTTCAACACCAAGTAG+AGG | - | chr1.3:44455312-44455331 | MS.gene034949:CDS | 35.0% | |
| TCAAGGAAAAGAGCAAGAAA+AGG | - | chr1.3:44455643-44455662 | MS.gene034949:CDS | 35.0% | |
| TCAAGGATTGTTGGATTCAA+TGG | - | chr1.3:44455174-44455193 | MS.gene034949:CDS | 35.0% | |
| TCTTGGATGAAGAAAATGGA+GGG | + | chr1.3:44454754-44454773 | None:intergenic | 35.0% | |
| TGTAGAGTTGTTGAGAATCA+AGG | - | chr1.3:44455157-44455176 | MS.gene034949:CDS | 35.0% | |
| TGTTGAGAATCAAGGATTGT+TGG | - | chr1.3:44455165-44455184 | MS.gene034949:CDS | 35.0% | |
| TTCTTGGATGAAGAAAATGG+AGG | + | chr1.3:44454755-44454774 | None:intergenic | 35.0% | |
| ! | CATGGTGAAATCTTCCTTTT+TGG | + | chr1.3:44454872-44454891 | None:intergenic | 35.0% |
| ! | GGTTTTGCTTATTAGGAAGA+AGG | - | chr1.3:44455951-44455970 | MS.gene034949:CDS | 35.0% |
| ! | GTTGTTGTTGTTGGTGTAAA+GGG | + | chr1.3:44454574-44454593 | None:intergenic | 35.0% |
| ! | TGTTGTTGTTGTTGGTGTAA+AGG | + | chr1.3:44454575-44454594 | None:intergenic | 35.0% |
| !! | AATGGACTGATACAATGGTA+AGG | - | chr1.3:44454903-44454922 | MS.gene034949:CDS | 35.0% |
| !! | TATTACATTGGTGATGAAGC+TGG | - | chr1.3:44454944-44454963 | MS.gene034949:CDS | 35.0% |
| AAGGAACAGGATAATGCAGT+TGG | - | chr1.3:44455783-44455802 | MS.gene034949:CDS | 40.0% | |
| AAGTGGAGATGTTGAAGAAG+AGG | - | chr1.3:44455489-44455508 | MS.gene034949:CDS | 40.0% | |
| ACTACTCCTAACAAACCAGA+AGG | + | chr1.3:44454542-44454561 | None:intergenic | 40.0% | |
| AGAGGATGATGAAGATGAAG+AGG | - | chr1.3:44455507-44455526 | MS.gene034949:CDS | 40.0% | |
| AGGAAAAGAGCAAGAAAAGG+AGG | - | chr1.3:44455646-44455665 | MS.gene034949:CDS | 40.0% | |
| ATCAGGAGAAGGTTGTTCAA+AGG | - | chr1.3:44455567-44455586 | MS.gene034949:CDS | 40.0% | |
| ATCTGTTTCAAGGGCTATGA+TGG | - | chr1.3:44455033-44455052 | MS.gene034949:CDS | 40.0% | |
| CACCATGGCAAAGAATGAAA+TGG | - | chr1.3:44454885-44454904 | MS.gene034949:CDS | 40.0% | |
| CAGTTGGAGGAACAGAAAAT+AGG | - | chr1.3:44455799-44455818 | MS.gene034949:CDS | 40.0% | |
| CATAGGAAACAACTTGGGAA+TGG | + | chr1.3:44454664-44454683 | None:intergenic | 40.0% | |
| CATTCATCAGAGAATGGTGT+AGG | - | chr1.3:44455418-44455437 | MS.gene034949:CDS | 40.0% | |
| GATGAAGATGAATCAGGAGA+AGG | - | chr1.3:44455556-44455575 | MS.gene034949:CDS | 40.0% | |
| GATGAGGATGAAGATGAATC+AGG | - | chr1.3:44455550-44455569 | MS.gene034949:CDS | 40.0% | |
| GGGAGAAAAAGCAATGGATA+AGG | - | chr1.3:44455764-44455783 | MS.gene034949:CDS | 40.0% | |
| GGTATAGTAGCAAGAAAGAG+AGG | - | chr1.3:44455872-44455891 | MS.gene034949:CDS | 40.0% | |
| GTCCATTTCATTCTTTGCCA+TGG | + | chr1.3:44454890-44454909 | None:intergenic | 40.0% | |
| TAACAAACCAGAAGGAGTGA+TGG | + | chr1.3:44454534-44454553 | None:intergenic | 40.0% | |
| TAGCAAGAAAGAGAGGGAAA+TGG | - | chr1.3:44455879-44455898 | MS.gene034949:CDS | 40.0% | |
| TCAGGAGAAGGTTGTTCAAA+GGG | - | chr1.3:44455568-44455587 | MS.gene034949:CDS | 40.0% | |
| TGTGTCAGTGTCATGATGTT+GGG | + | chr1.3:44454690-44454709 | None:intergenic | 40.0% | |
| TGTTACAGAAGAAGGGAAAG+TGG | - | chr1.3:44455008-44455027 | MS.gene034949:CDS | 40.0% | |
| TTAGGTGTTTCAAGAGGAGA+GGG | - | chr1.3:44455445-44455464 | MS.gene034949:CDS | 40.0% | |
| TTGTGTCAGTGTCATGATGT+TGG | + | chr1.3:44454691-44454710 | None:intergenic | 40.0% | |
| TTTAGGTGTTTCAAGAGGAG+AGG | - | chr1.3:44455444-44455463 | MS.gene034949:CDS | 40.0% | |
| ! | CAAGGGCTATGATGGAAAAA+GGG | - | chr1.3:44455041-44455060 | MS.gene034949:CDS | 40.0% |
| ! | GTCAGAGGATTTTTCTGATG+AGG | - | chr1.3:44455534-44455553 | MS.gene034949:CDS | 40.0% |
| ! | TCAAGGGCTATGATGGAAAA+AGG | - | chr1.3:44455040-44455059 | MS.gene034949:CDS | 40.0% |
| !! | AGTGGGTTGTTACAGAAGAA+GGG | - | chr1.3:44455001-44455020 | MS.gene034949:CDS | 40.0% |
| !! | ATCACTCCTTCTGGTTTGTT+AGG | - | chr1.3:44454533-44454552 | MS.gene034949:CDS | 40.0% |
| !! | TAGTGGGTTGTTACAGAAGA+AGG | - | chr1.3:44455000-44455019 | MS.gene034949:CDS | 40.0% |
| !! | TGCTGTTGATGTTGATTCTG+AGG | + | chr1.3:44455358-44455377 | None:intergenic | 40.0% |
| !! | TGTTGATGTTGATTCTGAGG+TGG | + | chr1.3:44455355-44455374 | None:intergenic | 40.0% |
| !!! | ATCCATTGCTTTTTCTCCCA+AGG | + | chr1.3:44455763-44455782 | None:intergenic | 40.0% |
| AGATGAAGAGGATGAGTCAG+AGG | - | chr1.3:44455519-44455538 | MS.gene034949:CDS | 45.0% | |
| AGCAAAGGTTGAAATGGGCA+AGG | - | chr1.3:44455851-44455870 | MS.gene034949:CDS | 45.0% | |
| AGTGGTGTGTTTCAAGATGG+AGG | - | chr1.3:44455730-44455749 | MS.gene034949:CDS | 45.0% | |
| GAACAGGATAATGCAGTTGG+AGG | - | chr1.3:44455786-44455805 | MS.gene034949:CDS | 45.0% | |
| GAGAATGGTGTAGGGAGTTT+AGG | - | chr1.3:44455427-44455446 | MS.gene034949:CDS | 45.0% | |
| GGGAACCCATGTTTCATTGA+AGG | + | chr1.3:44454734-44454753 | None:intergenic | 45.0% | |
| GGGAGTTTAGGTGTTTCAAG+AGG | - | chr1.3:44455439-44455458 | MS.gene034949:CDS | 45.0% | |
| GGTTGTTCAAAGGGTCAAGT+TGG | - | chr1.3:44455577-44455596 | MS.gene034949:CDS | 45.0% | |
| GTCCTTGGGAGAAAAAGCAA+TGG | - | chr1.3:44455758-44455777 | MS.gene034949:CDS | 45.0% | |
| GTGGTGTGTTTCAAGATGGA+GGG | - | chr1.3:44455731-44455750 | MS.gene034949:CDS | 45.0% | |
| GTGTCAGTGTCATGATGTTG+GGG | + | chr1.3:44454689-44454708 | None:intergenic | 45.0% | |
| TGGGAATGGTGCAAATGATG+AGG | + | chr1.3:44454650-44454669 | None:intergenic | 45.0% | |
| TTTCCAGCTGAAGAAAGCTC+TGG | - | chr1.3:44454839-44454858 | MS.gene034949:CDS | 45.0% | |
| ! | GGGAGCATAGGAAACAACTT+GGG | + | chr1.3:44454669-44454688 | None:intergenic | 45.0% |
| ! | TTTTCCACCATCACTCCTTC+TGG | - | chr1.3:44454524-44454543 | MS.gene034949:CDS | 45.0% |
| !! | GTGATGAAGCTGGTTCTGAA+GGG | - | chr1.3:44454954-44454973 | MS.gene034949:CDS | 45.0% |
| AAGATGGAGGGAAGAGTCCT+TGG | - | chr1.3:44455743-44455762 | MS.gene034949:CDS | 50.0% | |
| AGATGGAGGGAAGAGTCCTT+GGG | - | chr1.3:44455744-44455763 | MS.gene034949:CDS | 50.0% | |
| CAAACCAGAAGGAGTGATGG+TGG | + | chr1.3:44454531-44454550 | None:intergenic | 50.0% | |
| GTTCAACACCAAGTAGAGGG+TGG | - | chr1.3:44455316-44455335 | MS.gene034949:CDS | 50.0% | |
| TTCCACTTCCACCCTCTACT+TGG | + | chr1.3:44455327-44455346 | None:intergenic | 50.0% | |
| ! | GCTCTGGTGGTGATCCAAAA+AGG | - | chr1.3:44454855-44454874 | MS.gene034949:CDS | 50.0% |
| ! | GGGGAGCATAGGAAACAACT+TGG | + | chr1.3:44454670-44454689 | None:intergenic | 50.0% |
| ! | GTCATGATGTTGGGGAGCAT+AGG | + | chr1.3:44454681-44454700 | None:intergenic | 50.0% |
| !! | AGTTGTGGTCATGGTGCTGT+TGG | - | chr1.3:44455283-44455302 | MS.gene034949:CDS | 50.0% |
| !! | GGTGATGAAGCTGGTTCTGA+AGG | - | chr1.3:44454953-44454972 | MS.gene034949:CDS | 50.0% |
| CACCAAGTAGAGGGTGGAAG+TGG | - | chr1.3:44455322-44455341 | MS.gene034949:CDS | 55.0% | |
| CCACCAGAGCTTTCTTCAGC+TGG | + | chr1.3:44454845-44454864 | None:intergenic | 55.0% | |
| ! | CCAGCTGAAGAAAGCTCTGG+TGG | - | chr1.3:44454842-44454861 | MS.gene034949:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 44454503 | 44456041 | 44454503 | ID=MS.gene034949 |
| chr1.3 | mRNA | 44454503 | 44456041 | 44454503 | ID=MS.gene034949.t1;Parent=MS.gene034949 |
| chr1.3 | exon | 44454503 | 44456041 | 44454503 | ID=MS.gene034949.t1.exon1;Parent=MS.gene034949.t1 |
| chr1.3 | CDS | 44454503 | 44456041 | 44454503 | ID=cds.MS.gene034949.t1;Parent=MS.gene034949.t1 |
| Gene Sequence |
| Protein sequence |
