AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene034950

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene034950.t1 MTR_1g061660 96.567 233 7 1 1 233 1 232 4.07e-170 468
MS.gene034950.t1 MTR_7g103340 56.735 245 81 11 1 233 1 232 1.63e-77 233
MS.gene034950.t1 MTR_6g007647 56.863 102 37 1 59 153 32 133 3.22e-30 112
MS.gene034950.t1 MTR_6g007647 56.863 102 37 1 59 153 66 167 5.01e-30 113
MS.gene034950.t1 MTR_4g107650 50.420 119 52 1 49 160 84 202 1.71e-29 112
MS.gene034950.t1 MTR_6g011610 55.670 97 43 0 54 150 90 186 4.54e-28 107
MS.gene034950.t1 MTR_6g011610 55.670 97 43 0 54 150 71 167 4.68e-28 107
MS.gene034950.t1 MTR_8g468210 55.670 97 36 1 57 146 74 170 8.20e-28 107
MS.gene034950.t1 MTR_3g086790 38.202 178 88 5 55 221 55 221 4.30e-27 105
MS.gene034950.t1 MTR_8g089895 40.645 155 79 4 48 189 39 193 1.96e-26 104
MS.gene034950.t1 MTR_5g038280 54.128 109 39 2 58 155 85 193 2.74e-26 104
MS.gene034950.t1 MTR_5g039000 56.180 89 39 0 59 147 76 164 3.38e-26 103
MS.gene034950.t1 MTR_3g080100 41.722 151 79 3 59 207 19 162 2.40e-25 99.4
MS.gene034950.t1 MTR_3g080100 37.968 187 86 5 29 207 37 201 3.02e-25 100
MS.gene034950.t1 MTR_3g092150 49.038 104 45 2 62 158 40 142 3.38e-25 99.8
MS.gene034950.t1 MTR_8g469430 53.608 97 38 1 60 149 89 185 3.88e-25 100
MS.gene034950.t1 MTR_7g010020 54.639 97 37 1 58 147 78 174 3.55e-24 97.4
MS.gene034950.t1 MTR_8g026960 42.308 130 56 3 64 183 38 158 5.01e-24 96.3
MS.gene034950.t1 MTR_5g019680 44.340 106 59 0 55 160 48 153 1.14e-20 86.7
MS.gene034950.t1 MTR_4g097600 48.315 89 46 0 60 148 127 215 2.55e-18 81.6
MS.gene034950.t1 MTR_7g093430 45.161 93 51 0 60 152 160 252 3.50e-18 81.6
MS.gene034950.t1 MTR_5g019650 42.478 113 58 1 55 160 48 160 3.54e-18 80.5
MS.gene034950.t1 MTR_4g100550 38.971 136 66 3 60 187 120 246 3.79e-18 81.3
MS.gene034950.t1 MTR_1g017090 43.119 109 55 2 47 148 110 218 1.74e-17 79.7
MS.gene034950.t1 MTR_1g054285 44.944 89 49 0 60 148 154 242 2.67e-17 79.3
MS.gene034950.t1 MTR_5g013010 47.191 89 47 0 60 148 136 224 8.27e-17 77.8
MS.gene034950.t1 MTR_8g006705 46.067 89 48 0 60 148 146 234 1.34e-16 77.4
MS.gene034950.t1 MTR_2g061030 43.820 89 50 0 60 148 200 288 1.91e-16 77.4
MS.gene034950.t1 MTR_4g084750 44.681 94 52 0 55 148 60 153 2.67e-16 74.7
MS.gene034950.t1 MTR_5g014890 43.820 89 50 0 60 148 123 211 2.98e-15 73.2
MS.gene034950.t1 MTR_4g126900 44.186 86 48 0 63 148 91 176 3.95e-15 72.0
MS.gene034950.t1 MTR_3g103590 43.820 89 50 0 60 148 145 233 1.71e-14 71.6
MS.gene034950.t1 MTR_2g038625 42.697 89 51 0 60 148 82 170 5.89e-13 66.2
MS.gene034950.t1 MTR_2g038580 42.697 89 51 0 60 148 82 170 5.89e-13 66.2
MS.gene034950.t1 MTR_5g013010 55.769 52 23 0 60 111 136 187 1.58e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene034950.t1 AT5G03790 50.769 195 78 6 1 178 1 194 5.04e-49 160
MS.gene034950.t1 AT5G03790 53.704 162 58 5 1 145 1 162 1.53e-42 143
MS.gene034950.t1 AT2G36610 49.162 179 65 7 7 162 5 180 1.35e-41 140
MS.gene034950.t1 AT4G40060 41.875 160 82 3 27 177 28 185 8.60e-32 118
MS.gene034950.t1 AT1G69780 44.755 143 66 1 57 199 82 211 1.08e-30 115
MS.gene034950.t1 AT5G15150 62.366 93 35 0 57 149 112 204 9.92e-30 113
MS.gene034950.t1 AT2G22430 54.455 101 39 1 56 149 58 158 9.86e-29 110
MS.gene034950.t1 AT5G65310 41.667 144 72 4 12 151 28 163 4.65e-28 108
MS.gene034950.t1 AT5G65310 41.667 144 72 4 12 151 10 145 4.68e-28 108
MS.gene034950.t1 AT3G01220 45.833 144 69 3 23 158 50 192 1.85e-27 106
MS.gene034950.t1 AT3G01470 38.562 153 84 2 57 202 65 214 4.51e-27 105
MS.gene034950.t1 AT2G46680 49.541 109 48 1 45 146 17 125 5.34e-27 104
MS.gene034950.t1 AT2G46680 47.826 115 53 1 45 152 17 131 3.43e-26 102
MS.gene034950.t1 AT3G61890 38.650 163 71 3 63 214 33 177 4.05e-26 101
MS.gene034950.t1 AT1G26960 42.958 142 60 3 57 193 68 193 4.20e-25 99.8
MS.gene034950.t1 AT2G18550 40.476 126 71 1 55 176 56 181 1.16e-24 97.8
MS.gene034950.t1 AT4G36740 50.526 95 47 0 55 149 51 145 3.22e-24 96.3
MS.gene034950.t1 AT4G36740 50.526 95 47 0 55 149 50 144 3.32e-24 96.3
MS.gene034950.t1 AT1G27045 49.020 102 45 1 60 154 25 126 1.67e-22 90.9
MS.gene034950.t1 AT1G27045 49.020 102 45 1 60 154 25 126 1.67e-22 90.9
MS.gene034950.t1 AT1G27045 49.020 102 45 1 60 154 68 169 1.79e-22 92.0
MS.gene034950.t1 AT1G27045 49.020 102 45 1 60 154 17 118 1.85e-22 90.9
MS.gene034950.t1 AT5G66700 48.913 92 47 0 60 151 71 162 1.13e-21 90.1
MS.gene034950.t1 AT1G27045 43.636 110 58 1 60 169 68 173 8.03e-21 88.2
MS.gene034950.t1 AT5G53980 44.211 95 53 0 60 154 11 105 3.29e-17 76.3
MS.gene034950.t1 AT4G16780 43.617 94 53 0 55 148 124 217 4.30e-17 78.6
MS.gene034950.t1 AT5G06710 44.944 89 49 0 60 148 190 278 1.43e-16 77.8
MS.gene034950.t1 AT2G01430 48.315 89 46 0 60 148 139 227 3.00e-16 76.3
MS.gene034950.t1 AT4G17460 41.489 94 55 0 55 148 130 223 3.60e-16 75.9
MS.gene034950.t1 AT3G60390 46.067 89 48 0 60 148 162 250 3.62e-16 76.3
MS.gene034950.t1 AT2G22800 42.553 94 54 0 55 148 108 201 9.86e-16 74.7
MS.gene034950.t1 AT4G37790 42.553 94 54 0 55 148 121 214 1.52e-15 74.3
MS.gene034950.t1 AT5G47370 40.426 94 56 0 55 148 125 218 2.50e-15 73.6
MS.gene034950.t1 AT2G44910 42.697 89 51 0 60 148 163 251 4.04e-15 73.6
MS.gene034950.t1 AT1G70920 41.489 94 55 0 55 148 34 127 2.33e-12 63.5
MS.gene034950.t1 AT1G70920 41.489 94 55 0 55 148 64 157 2.64e-12 64.3
MS.gene034950.t1 AT5G06710 53.846 52 24 0 60 111 190 241 9.73e-12 63.5
MS.gene034950.t1 AT2G01430 56.604 53 23 0 60 112 139 191 2.12e-11 61.6

Find 50 sgRNAs with CRISPR-Local

Find 123 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCACCTAGCACGCCTATTT+TGG 0.156053 1.3:-44483099 None:intergenic
TTGCTATTTGGTTCCAAAAT+AGG 0.158232 1.3:+44483086 MS.gene034950:CDS
AGCCTCGTCAAATTGCTATT+TGG 0.235729 1.3:+44483074 MS.gene034950:CDS
ATGGAGAAAATGATGAAGTA+TGG 0.267831 1.3:+44482926 MS.gene034950:CDS
CCTTGGACACAACCTCAAAT+TGG 0.274196 1.3:-44483162 None:intergenic
ATGAAGCTTTCCAAGGAGTT+AGG 0.302805 1.3:+44483046 MS.gene034950:CDS
AAACTGTTGTTTCAATTTAG+AGG 0.320208 1.3:+44484612 MS.gene034950:CDS
CTTTCCCTTCACCTCTCTGT+TGG 0.348637 1.3:-44484560 None:intergenic
GAAAGCTTCATCTTCCTTTG+AGG 0.362313 1.3:-44483034 None:intergenic
AATTAAGGGTGATAGTTATA+AGG 0.365223 1.3:-44484688 None:intergenic
AAAGCTTCATCTTCCTTTGA+GGG 0.383872 1.3:-44483033 None:intergenic
GCAGGCCAGTAGGGCAATAG+TGG 0.385106 1.3:-44484658 None:intergenic
AGAGACAATGTTCCCAGAAA+TGG 0.408745 1.3:+44482907 MS.gene034950:CDS
GTAGTTGTAGAGGAAGCTTA+AGG 0.434188 1.3:-44482475 None:intergenic
GTGTTCCACTATTGCCCTAC+TGG 0.465761 1.3:+44484653 MS.gene034950:CDS
TGAAGCTTTCCAAGGAGTTA+GGG 0.476348 1.3:+44483047 MS.gene034950:CDS
CCAATTTGAGGTTGTGTCCA+AGG 0.478928 1.3:+44483162 MS.gene034950:CDS
TTCACTTAGACACCAATTTG+AGG 0.493024 1.3:+44483150 MS.gene034950:CDS
ATACAAGTGTTCAAGTTGCT+TGG 0.493063 1.3:-44483125 None:intergenic
GGTACAGAAGCAGGCCAGTA+GGG 0.495028 1.3:-44484667 None:intergenic
AGGCTGTAGCCCTAACTCCT+TGG 0.496406 1.3:-44483056 None:intergenic
TGTTCAGGTTGTGAAGTTGA+AGG 0.499837 1.3:+44484423 MS.gene034950:intron
GTGTGTTTGTTAAGGAATGA+TGG 0.514828 1.3:+44482862 MS.gene034950:intron
GGTTCCAAAATAGGCGTGCT+AGG 0.516451 1.3:+44483095 MS.gene034950:CDS
TACAACCAATGCTCATATCA+AGG 0.516637 1.3:+44482495 MS.gene034950:CDS
TAGTTATAAGGTACAGAAGC+AGG 0.517499 1.3:-44484676 None:intergenic
CAACAGTTGAACATTGATGA+AGG 0.518077 1.3:+44484589 MS.gene034950:CDS
AAAACAGCAGCTTCAGGATG+AGG 0.518698 1.3:+44483186 MS.gene034950:CDS
TGGAGAAAATGATGAAGTAT+GGG 0.521222 1.3:+44482927 MS.gene034950:CDS
AGCATTGGTTGTAGTTGTAG+AGG 0.525273 1.3:-44482485 None:intergenic
TAGATAATTATGGAATGGAA+TGG 0.526946 1.3:+44482417 None:intergenic
AACTCTTGTGGTAGAATGCA+AGG 0.527714 1.3:+44484466 MS.gene034950:CDS
GAGTGAACAGATGGAATCAC+TGG 0.535577 1.3:+44482979 MS.gene034950:CDS
AGGTACAGAAGCAGGCCAGT+AGG 0.540474 1.3:-44484668 None:intergenic
GCGATTAACGAGTGAACAGA+TGG 0.542500 1.3:+44482970 MS.gene034950:CDS
ACAGATAGATAATTATGGAA+TGG 0.549629 1.3:+44482412 None:intergenic
TGGAAGTGAAACAACAAGAC+TGG 0.554952 1.3:+44482882 MS.gene034950:CDS
CTTAAGGAAGACTCTGGTTG+AGG 0.556116 1.3:-44482459 None:intergenic
TTGCTCCAACAGAGAGGTGA+AGG 0.556685 1.3:+44484555 MS.gene034950:CDS
AGATCAAACTAGACCCTCAA+AGG 0.558248 1.3:+44483020 MS.gene034950:CDS
AACAGTAGAAAGCACATCAG+AGG 0.578567 1.3:+44484522 MS.gene034950:CDS
AAAGAACAAGGTAACTCTTG+TGG 0.599344 1.3:+44484454 MS.gene034950:CDS
AGGAAGCTTAAGGAAGACTC+TGG 0.609695 1.3:-44482465 None:intergenic
AAGGAAGATGAAGCTTTCCA+AGG 0.615641 1.3:+44483039 MS.gene034950:CDS
AAGGCTATGTTGAAAGAACA+AGG 0.632753 1.3:+44484442 MS.gene034950:CDS
TCCAAAATAGGCGTGCTAGG+TGG 0.637372 1.3:+44483098 MS.gene034950:CDS
TTACTATACAGAAATGTCAG+TGG 0.650416 1.3:+44484489 MS.gene034950:CDS
TGCTCCAACAGAGAGGTGAA+GGG 0.655501 1.3:+44484556 MS.gene034950:CDS
AACCAAATAGCAATTTGACG+AGG 0.698239 1.3:-44483076 None:intergenic
TCTACGTTGCTCCAACAGAG+AGG 0.709736 1.3:+44484549 MS.gene034950:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAGAAAAATAAATTATTTA+AGG + chr1.3:44483551-44483570 MS.gene034950:intron 10.0%
!! TAATCATAAGTTTAAATATA+GGG - chr1.3:44482616-44482635 None:intergenic 10.0%
!! TACGTAAAAAAAATTTAAAA+TGG + chr1.3:44483635-44483654 MS.gene034950:intron 10.0%
!! TTAATCATAAGTTTAAATAT+AGG - chr1.3:44482617-44482636 None:intergenic 10.0%
!!! TGTTATTTTAAATAATCAAA+TGG + chr1.3:44483420-44483439 MS.gene034950:intron 10.0%
!!! TTTTCTCTTATTTATATTAT+TGG + chr1.3:44484089-44484108 MS.gene034950:intron 10.0%
!! AAAATATTGTTTAGAAGTTT+AGG - chr1.3:44482842-44482861 None:intergenic 15.0%
!! AAAGTAAAATAGAGTTTAAT+TGG + chr1.3:44484319-44484338 MS.gene034950:intron 15.0%
!! TAAATAGAGAAATACTTAAA+TGG - chr1.3:44483490-44483509 None:intergenic 15.0%
!! TATTAAATATTAAAGTAGCA+TGG - chr1.3:44484290-44484309 None:intergenic 15.0%
!!! ATAATTTATTTTTCTCTTCT+TGG - chr1.3:44483548-44483567 None:intergenic 15.0%
!!! ATTTATATATGTAATTTGCA+TGG - chr1.3:44484392-44484411 None:intergenic 15.0%
!!! GAAGTATATGTTTTTATTTT+CGG + chr1.3:44483742-44483761 MS.gene034950:intron 15.0%
!! AGAAAAAAACTATATATGCA+TGG - chr1.3:44482662-44482681 None:intergenic 20.0%
!! ATCGAAAACGTATAAATATA+TGG + chr1.3:44483595-44483614 MS.gene034950:intron 20.0%
!! ATTCAAAATTTACGTATGTT+TGG + chr1.3:44482723-44482742 MS.gene034950:intron 20.0%
!! TATATCAATGACTTATATTG+AGG - chr1.3:44483829-44483848 None:intergenic 20.0%
!! TATATGTCATATATATAGCT+TGG + chr1.3:44482691-44482710 MS.gene034950:intron 20.0%
!! TCATTCTCATATATTATTAC+CGG + chr1.3:44482799-44482818 MS.gene034950:intron 20.0%
!!! AAATATATGGTGTTGATATT+GGG + chr1.3:44483608-44483627 MS.gene034950:intron 20.0%
!!! AAGCGCAAATAATTTTATTT+TGG + chr1.3:44483348-44483367 MS.gene034950:intron 20.0%
!!! AATATTTTGTGTGTTTGTTA+AGG + chr1.3:44482854-44482873 MS.gene034950:intron 20.0%
!!! ATTACAATGTGTTATTTTAG+TGG + chr1.3:44483893-44483912 MS.gene034950:intron 20.0%
!!! ATTACATTCTAGAAGTTATT+AGG - chr1.3:44482586-44482605 None:intergenic 20.0%
!!! TAAATATATGGTGTTGATAT+TGG + chr1.3:44483607-44483626 MS.gene034950:intron 20.0%
!!! TTATTTTGTCATAATCCTTA+CGG + chr1.3:44483669-44483688 MS.gene034950:intron 20.0%
! AAAAACTATATATGCATGGT+TGG - chr1.3:44482658-44482677 None:intergenic 25.0%
! AATGAAGGCAAAATATAGTT+TGG + chr1.3:44483772-44483791 MS.gene034950:intron 25.0%
! ACACATACATACATACATAT+TGG - chr1.3:44484180-44484199 None:intergenic 25.0%
! AGTTGGAGTAATATATTTGA+TGG - chr1.3:44483799-44483818 None:intergenic 25.0%
! ATAAATTTATTCTAACGGTC+TGG + chr1.3:44483851-44483870 MS.gene034950:intron 25.0%
! TGATCAACTTTATGAGTTTA+TGG - chr1.3:44484068-44484087 None:intergenic 25.0%
! TTTATGAGTTTATGGATTCA+CGG - chr1.3:44484060-44484079 None:intergenic 25.0%
!!! AAACTGTTGTTTCAATTTAG+AGG + chr1.3:44484612-44484631 MS.gene034950:CDS 25.0%
!!! TTATTTTAGTGGTGTAAGTT+GGG + chr1.3:44483904-44483923 MS.gene034950:intron 25.0%
AGTATTTGTGTGTGTCTAAA+TGG + chr1.3:44483445-44483464 MS.gene034950:intron 30.0%
ATCAATGACTTATATTGAGG+TGG - chr1.3:44483826-44483845 None:intergenic 30.0%
ATGGAGAAAATGATGAAGTA+TGG + chr1.3:44482926-44482945 MS.gene034950:CDS 30.0%
GAACAATACCTAAATGGTTA+CGG + chr1.3:44483301-44483320 MS.gene034950:intron 30.0%
GTCAATGAACAATACCTAAA+TGG + chr1.3:44483295-44483314 MS.gene034950:intron 30.0%
TGGAGAAAATGATGAAGTAT+GGG + chr1.3:44482927-44482946 MS.gene034950:CDS 30.0%
TGTCACCATGATTTCATTAA+GGG - chr1.3:44483962-44483981 None:intergenic 30.0%
TTACTATACAGAAATGTCAG+TGG + chr1.3:44484489-44484508 MS.gene034950:CDS 30.0%
TTTACCTCCTCATTGAAATT+TGG - chr1.3:44483699-44483718 None:intergenic 30.0%
! ATTTTCGGTGAACTTAATGA+AGG + chr1.3:44483757-44483776 MS.gene034950:intron 30.0%
! GTCTAAATGGATTTCATTTG+TGG + chr1.3:44483458-44483477 MS.gene034950:intron 30.0%
! TCATCATTTTCTCCATTTCT+GGG - chr1.3:44482922-44482941 None:intergenic 30.0%
! TTCATCATTTTCTCCATTTC+TGG - chr1.3:44482923-44482942 None:intergenic 30.0%
! TTTTACCTTGATATGAGCAT+TGG - chr1.3:44482503-44482522 None:intergenic 30.0%
!! TTGCTATTTGGTTCCAAAAT+AGG + chr1.3:44483086-44483105 MS.gene034950:CDS 30.0%
!!! GTTATTTTAGTGGTGTAAGT+TGG + chr1.3:44483903-44483922 MS.gene034950:intron 30.0%
!!! TATTTTAGTGGTGTAAGTTG+GGG + chr1.3:44483905-44483924 MS.gene034950:intron 30.0%
AAACAATACCATGTAGACGT+CGG + chr1.3:44483520-44483539 MS.gene034950:intron 35.0%
AAAGAACAAGGTAACTCTTG+TGG + chr1.3:44484454-44484473 MS.gene034950:CDS 35.0%
AAAGCTTCATCTTCCTTTGA+GGG - chr1.3:44483036-44483055 None:intergenic 35.0%
AACCAAATAGCAATTTGACG+AGG - chr1.3:44483079-44483098 None:intergenic 35.0%
AAGGCTATGTTGAAAGAACA+AGG + chr1.3:44484442-44484461 MS.gene034950:CDS 35.0%
CAACAGTTGAACATTGATGA+AGG + chr1.3:44484589-44484608 MS.gene034950:CDS 35.0%
GTGTCACCATGATTTCATTA+AGG - chr1.3:44483963-44483982 None:intergenic 35.0%
TACAACCAATGCTCATATCA+AGG + chr1.3:44482495-44482514 MS.gene034950:CDS 35.0%
TAGTCCAAATTTCAATGAGG+AGG + chr1.3:44483692-44483711 MS.gene034950:intron 35.0%
TAGTTATAAGGTACAGAAGC+AGG - chr1.3:44484679-44484698 None:intergenic 35.0%
TATATTGAGGTGGTGTAAGT+TGG - chr1.3:44483816-44483835 None:intergenic 35.0%
TGACACCCTTAATGAAATCA+TGG + chr1.3:44483954-44483973 MS.gene034950:intron 35.0%
TTCACTTAGACACCAATTTG+AGG + chr1.3:44483150-44483169 MS.gene034950:CDS 35.0%
TTGAAATTTGGACTACCGTA+AGG - chr1.3:44483687-44483706 None:intergenic 35.0%
! GTGTGTTTGTTAAGGAATGA+TGG + chr1.3:44482862-44482881 MS.gene034950:intron 35.0%
!! AAATTTGTTGTTCCCTGTTC+AGG + chr1.3:44484408-44484427 MS.gene034950:intron 35.0%
!! ATACAAGTGTTCAAGTTGCT+TGG - chr1.3:44483128-44483147 None:intergenic 35.0%
!!! TATTTTGGCGCATACACAAA+TGG + chr1.3:44483363-44483382 MS.gene034950:intron 35.0%
AACTCTTGTGGTAGAATGCA+AGG + chr1.3:44484466-44484485 MS.gene034950:CDS 40.0%
AAGGAAGATGAAGCTTTCCA+AGG + chr1.3:44483039-44483058 MS.gene034950:CDS 40.0%
ACACGCGTAACTACATACAA+TGG + chr1.3:44482773-44482792 MS.gene034950:intron 40.0%
AGAGACAATGTTCCCAGAAA+TGG + chr1.3:44482907-44482926 MS.gene034950:CDS 40.0%
AGATCAAACTAGACCCTCAA+AGG + chr1.3:44483020-44483039 MS.gene034950:CDS 40.0%
ATGAAGCTTTCCAAGGAGTT+AGG + chr1.3:44483046-44483065 MS.gene034950:CDS 40.0%
CGAACGCGTAACTAAAATCA+TGG + chr1.3:44484001-44484020 MS.gene034950:intron 40.0%
CGGTAGTCCAAATTTCAATG+AGG + chr1.3:44483689-44483708 MS.gene034950:intron 40.0%
GAAACAAAGTTGCAGTGCTA+TGG - chr1.3:44484216-44484235 None:intergenic 40.0%
GAAAGCTTCATCTTCCTTTG+AGG - chr1.3:44483037-44483056 None:intergenic 40.0%
GTAGTTGTAGAGGAAGCTTA+AGG - chr1.3:44482478-44482497 None:intergenic 40.0%
TAACACAGCCGTAACCATTT+AGG - chr1.3:44483312-44483331 None:intergenic 40.0%
TCAACTTCACAACCTGAACA+GGG - chr1.3:44484423-44484442 None:intergenic 40.0%
TGAAGCTTTCCAAGGAGTTA+GGG + chr1.3:44483047-44483066 MS.gene034950:CDS 40.0%
TGGAAGTGAAACAACAAGAC+TGG + chr1.3:44482882-44482901 MS.gene034950:CDS 40.0%
TTCAACTTCACAACCTGAAC+AGG - chr1.3:44484424-44484443 None:intergenic 40.0%
! AACAGTAGAAAGCACATCAG+AGG + chr1.3:44484522-44484541 MS.gene034950:CDS 40.0%
! AGCCTCGTCAAATTGCTATT+TGG + chr1.3:44483074-44483093 MS.gene034950:CDS 40.0%
! CCATGTCTCTTTTGTAGACA+CGG + chr1.3:44484150-44484169 MS.gene034950:intron 40.0%
! GTAAGTTGGGGCATTCTATT+TGG + chr1.3:44483917-44483936 MS.gene034950:intron 40.0%
!! ACGGCTGTGTTATTTAGATG+AGG + chr1.3:44483320-44483339 MS.gene034950:intron 40.0%
!! ACTGGAGAGTAGTTTTCAAG+AGG + chr1.3:44482997-44483016 MS.gene034950:CDS 40.0%
!! AGCATTGGTTGTAGTTGTAG+AGG - chr1.3:44482488-44482507 None:intergenic 40.0%
!! CGGCTGTGTTATTTAGATGA+GGG + chr1.3:44483321-44483340 MS.gene034950:intron 40.0%
!! TGTTCAGGTTGTGAAGTTGA+AGG + chr1.3:44484423-44484442 MS.gene034950:intron 40.0%
AAAACAGCAGCTTCAGGATG+AGG + chr1.3:44483186-44483205 MS.gene034950:CDS 45.0%
AGGAAGCTTAAGGAAGACTC+TGG - chr1.3:44482468-44482487 None:intergenic 45.0%
CAAGGAAAAACAGCAGCTTC+AGG + chr1.3:44483180-44483199 MS.gene034950:CDS 45.0%
CCGTGTCTACAAAAGAGACA+TGG - chr1.3:44484153-44484172 None:intergenic 45.0%
CCTTGGACACAACCTCAAAT+TGG - chr1.3:44483165-44483184 None:intergenic 45.0%
CTTAAGGAAGACTCTGGTTG+AGG - chr1.3:44482462-44482481 None:intergenic 45.0%
GAGTGAACAGATGGAATCAC+TGG + chr1.3:44482979-44482998 MS.gene034950:CDS 45.0%
GCGATTAACGAGTGAACAGA+TGG + chr1.3:44482970-44482989 MS.gene034950:CDS 45.0%
GGACACTGATATGTAGACAC+CGG - chr1.3:44482821-44482840 None:intergenic 45.0%
GTCGATATCATGTTGGACAC+TGG - chr1.3:44482755-44482774 None:intergenic 45.0%
! AGTTGGGGCATTCTATTTGG+TGG + chr1.3:44483920-44483939 MS.gene034950:intron 45.0%
! CCAATTTGAGGTTGTGTCCA+AGG + chr1.3:44483162-44483181 MS.gene034950:CDS 45.0%
! TACGCGTGTCGATATCATGT+TGG - chr1.3:44482762-44482781 None:intergenic 45.0%
!!! CTGAAGCTGCTGTTTTTCCT+TGG - chr1.3:44483182-44483201 None:intergenic 45.0%
!! ATATTATAAATTTATTCTAA+CGG + chr1.3:44483846-44483865 MS.gene034950:intron 5.0%
CTTTCCCTTCACCTCTCTGT+TGG - chr1.3:44484563-44484582 None:intergenic 50.0%
GGTTCCAAAATAGGCGTGCT+AGG + chr1.3:44483095-44483114 MS.gene034950:CDS 50.0%
GTGTTCCACTATTGCCCTAC+TGG + chr1.3:44484653-44484672 MS.gene034950:CDS 50.0%
TCCAAAATAGGCGTGCTAGG+TGG + chr1.3:44483098-44483117 MS.gene034950:CDS 50.0%
TCTACGTTGCTCCAACAGAG+AGG + chr1.3:44484549-44484568 MS.gene034950:CDS 50.0%
TCTTGGATCCGACGTCTACA+TGG - chr1.3:44483531-44483550 None:intergenic 50.0%
TGCTCCAACAGAGAGGTGAA+GGG + chr1.3:44484556-44484575 MS.gene034950:CDS 50.0%
TTGCTCCAACAGAGAGGTGA+AGG + chr1.3:44484555-44484574 MS.gene034950:CDS 50.0%
! TCCACCTAGCACGCCTATTT+TGG - chr1.3:44483102-44483121 None:intergenic 50.0%
AGGCTGTAGCCCTAACTCCT+TGG - chr1.3:44483059-44483078 None:intergenic 55.0%
AGGTACAGAAGCAGGCCAGT+AGG - chr1.3:44484671-44484690 None:intergenic 55.0%
GGTACAGAAGCAGGCCAGTA+GGG - chr1.3:44484670-44484689 None:intergenic 55.0%
GCAGGCCAGTAGGGCAATAG+TGG - chr1.3:44484661-44484680 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 44482426 44484708 44482426 ID=MS.gene034950
chr1.3 mRNA 44482426 44484708 44482426 ID=MS.gene034950.t1;Parent=MS.gene034950
chr1.3 exon 44482426 44482516 44482426 ID=MS.gene034950.t1.exon1;Parent=MS.gene034950.t1
chr1.3 CDS 44482426 44482516 44482426 ID=cds.MS.gene034950.t1;Parent=MS.gene034950.t1
chr1.3 exon 44482876 44483207 44482876 ID=MS.gene034950.t1.exon2;Parent=MS.gene034950.t1
chr1.3 CDS 44482876 44483207 44482876 ID=cds.MS.gene034950.t1;Parent=MS.gene034950.t1
chr1.3 exon 44484430 44484708 44484430 ID=MS.gene034950.t1.exon3;Parent=MS.gene034950.t1
chr1.3 CDS 44484430 44484708 44484430 ID=cds.MS.gene034950.t1;Parent=MS.gene034950.t1
Gene Sequence

>MS.gene034950

ATGGAATGGAATGGAAACACAAGAAGCTTTGTTCCTCAACCAGAGTCTTCCTTAAGCTTCCTCTACAACTACAACCAATGCTCATATCAAGGTAAAAATTATCATCACAACACTAGCTACTCTATTGCACTCATCTTTTTATCATCATAACATTGCACCTAATAACTTCTAGAATGTAATTTAGTTACCCTATATTTAAACTTATGATTAAATTTAATATATTTTCTGTCCAACCATGCATATATAGTTTTTTTCTTCTTCTATATATATGTCATATATATAGCTTGGTCAACATTCATTCAAAATTTACGTATGTTTGGCGCGTGCCAGTGTCCAACATGATATCGACACGCGTAACTACATACAATGGCTTTCATTCTCATATATTATTACCGGTGTCTACATATCAGTGTCCTAAACTTCTAAACAATATTTTGTGTGTTTGTTAAGGAATGATGGAAGTGAAACAACAAGACTGGACAGAGACAATGTTCCCAGAAATGGAGAAAATGATGAAGTATGGGAACTTGCAAGAAAAGAAAAAGCGATTAACGAGTGAACAGATGGAATCACTGGAGAGTAGTTTTCAAGAGGAGATCAAACTAGACCCTCAAAGGAAGATGAAGCTTTCCAAGGAGTTAGGGCTACAGCCTCGTCAAATTGCTATTTGGTTCCAAAATAGGCGTGCTAGGTGGAAGACCAAGCAACTTGAACACTTGTATGATTCACTTAGACACCAATTTGAGGTTGTGTCCAAGGAAAAACAGCAGCTTCAGGATGAGGTACGTTAACATATGTAATATGTATACTATATACTATGCATGTATAGTGAATATTTTATATGCTGAAAACAAAAAACATATAAATATGTCAATGAACAATACCTAAATGGTTACGGCTGTGTTATTTAGATGAGGGACACAAGCGCAAATAATTTTATTTTGGCGCATACACAAATGGAAAAAAAGATAAAACAAAAAACACTTAAATAATATGTTATTTTAAATAATCAAATGGTAAGTATTTGTGTGTGTCTAAATGGATTTCATTTGTGGTTGTATCCATTTAAGTATTTCTCTATTTAAACACACGTTAAACAATACCATGTAGACGTCGGATCCAAGAAGAGAAAAATAAATTATTTAAGGTGAAAGAAAAATAATAAAAAAATCGAAAACGTATAAATATATGGTGTTGATATTGGGTTTTTACGTAAAAAAAATTTAAAATGGTCAACTTTTATTTATTTTGTCATAATCCTTACGGTAGTCCAAATTTCAATGAGGAGGTAAAAAGTTTGACTATATTTCAACAATGAAGTATATGTTTTTATTTTCGGTGAACTTAATGAAGGCAAAATATAGTTTGGACCATCAAATATATTACTCCAACTTACACCACCTCAATATAAGTCATTGATATATTATAAATTTATTCTAACGGTCTGGATCTTATGATGAAAAAGTTATTACAATGTGTTATTTTAGTGGTGTAAGTTGGGGCATTCTATTTGGTGGTGTAAACTAAATGACACCCTTAATGAAATCATGGTGACACTGTAATTTTGTTGAAACTCGAACGCGTAACTAAAATCATGGTTGCACAATGTGATTTGTGATTCTGCAAACTCACCGTGAATCCATAAACTCATAAAGTTGATCAGTTTTCTCTTATTTATATTATTGGTGTTAAGTAAACTTTCAAAGTGATTGTATGTCTCTCTACCATGTCTCTTTTGTAGACACGGTTTACCAATATGTATGTATGTATGTGTTTATTTTAAAAATCCATAGCACTGCAACTTTGTTTCATGATTTTATAATCTGAAGTAAATTGAAGATACTTTGCTACTTTGAAGATACCATGCTACTTTAATATTTAATACTATTGTCTAAAGTAAAATAGAGTTTAATTGGTTTTACTGTTAAATTTGAACTAGACATGTGACATATACTATGCTAATCCATGCAAATTACATATATAAATTTGTTGTTCCCTGTTCAGGTTGTGAAGTTGAAGGCTATGTTGAAAGAACAAGGTAACTCTTGTGGTAGAATGCAAGGTTACTATACAGAAATGTCAGTGGAAGAAACAGAAACAGTAGAAAGCACATCAGAGGCAGCTCTACGTTGCTCCAACAGAGAGGTGAAGGGAAAGATTCATCAACAGTTGAACATTGATGAAGGAAACTGTTGTTTCAATTTAGAGGAGTATAACATTAATAACAGTGTTCCACTATTGCCCTACTGGCCTGCTTCTGTACCTTATAACTATCACCCTTAA
Protein sequence

>MS.gene034950.t1

MEWNGNTRSFVPQPESSLSFLYNYNQCSYQGMMEVKQQDWTETMFPEMEKMMKYGNLQEKKKRLTSEQMESLESSFQEEIKLDPQRKMKLSKELGLQPRQIAIWFQNRRARWKTKQLEHLYDSLRHQFEVVSKEKQQLQDEVVKLKAMLKEQGNSCGRMQGYYTEMSVEETETVESTSEAALRCSNREVKGKIHQQLNIDEGNCCFNLEEYNINNSVPLLPYWPASVPYNYHP