AlfalfaGEDB | MS.gene03506

M. sativa cultivar XinJiangDaYe / MS.gene03506

KEGG: K09419
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0110165 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00447.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03506.t1	XP_003629611.1	59.3	457	52	5	1	323	1	457	2.10E-125	458.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03506.t1	Q94BZ5	39.8	432	147	6	1	319	1	432	1.1e-69	265.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03506.t1	G7LH28	59.3	457	52	5	1	323	1	457	1.5e-125	458.8

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene03506.t1	TF	HSF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03506.t1	MTR_6g043060	72.590	332	75	4	1	321	1	327	1.89e-169	474
MS.gene03506.t1	MTR_8g083100	76.871	294	29	4	23	277	23	316	1.06e-152	437
MS.gene03506.t1	MTR_8g083100	80.435	46	9	0	278	323	412	457	6.69e-17	81.6
MS.gene03506.t1	MTR_2g100680	57.595	316	92	6	1	276	12	325	1.31e-113	337
MS.gene03506.t1	MTR_6g044340	61.852	270	75	3	68	323	8	263	8.38e-109	317
MS.gene03506.t1	MTR_2g100670	56.446	287	101	5	1	269	14	294	1.41e-99	296
MS.gene03506.t1	MTR_2g100670	56.446	287	101	5	1	269	122	402	9.13e-98	295
MS.gene03506.t1	MTR_8g087540	37.466	363	157	9	15	319	5	355	3.50e-65	211
MS.gene03506.t1	MTR_5g029680	51.185	211	89	4	22	218	32	242	4.00e-64	211
MS.gene03506.t1	MTR_6g044430	51.779	253	48	6	100	319	14	225	3.53e-62	197

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03506.t1	AT4G13980	56.710	231	98	2	1	229	1	231	7.73e-85	263
MS.gene03506.t1	AT1G32330	47.234	235	105	5	1	216	16	250	1.54e-58	196
MS.gene03506.t1	AT1G32330	47.234	235	105	5	1	216	16	250	1.92e-58	195
MS.gene03506.t1	AT4G17750	48.611	216	90	4	22	216	52	267	2.25e-58	196
MS.gene03506.t1	AT5G16820	47.788	226	100	6	20	228	25	249	2.40e-58	195
MS.gene03506.t1	AT5G16820	47.788	226	100	6	20	228	25	249	2.40e-58	195
MS.gene03506.t1	AT3G02990	43.348	233	119	4	8	228	9	240	4.18e-57	191
MS.gene03506.t1	AT4G18880	48.341	211	99	3	16	220	9	215	1.36e-51	175
MS.gene03506.t1	AT5G45710	34.756	328	167	6	14	319	5	307	4.61e-51	172
MS.gene03506.t1	AT5G45710	34.756	328	167	6	14	319	5	307	4.61e-51	172

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Find 72 sgRNAs with CRISPR-Local

Find 147 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCAGATCCTGATCGTT+GGG	0.473476	6.2:-37839092	MS.gene03506:CDS
AACTGACCAAGCAATTACTG+GGG	0.734160	6.2:-37838546	MS.gene03506:CDS
AAGATGCCCCAGTAATTGCT+TGG	0.581078	6.2:+37838540	None:intergenic
AAGGTAGCTTGGTTAATCCA+TGG	0.568191	6.2:-37838664	MS.gene03506:CDS
ACCAAGCTACCTTCGGCAAC+AGG	0.417304	6.2:+37838674	None:intergenic
ACGGAGTGAATGATGTGTTT+TGG	0.356521	6.2:-37838454	MS.gene03506:CDS
ACGTTACCTGAAGCCTCCTT+TGG	0.398346	6.2:+37838500	None:intergenic
AGAAACGATCTCATCTGTGG+TGG	0.582151	6.2:+37840559	None:intergenic
AGAACGCGAGAGAATTCAGG+AGG	0.628084	6.2:+37840500	None:intergenic
AGAACTGACCAAGCAATTAC+TGG	0.383163	6.2:-37838548	MS.gene03506:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAATTTCTGCAAGCATC+TGG	-	chr6.2:37839165-37839184	MS.gene03506:intron	30.0%
AGATCAAAAACATCTTCTGA+CGG	-	chr6.2:37840009-37840028	MS.gene03506:intron	30.0%
ATAACAAAAGCTTCATCGTT+TGG	-	chr6.2:37838527-37838546	MS.gene03506:CDS	30.0%
CTTCATCGAATTTCAATTAG+TGG	-	chr6.2:37838767-37838786	MS.gene03506:CDS	30.0%
CTTCATTAACCAAAAACTTC+AGG	+	chr6.2:37839802-37839821	None:intergenic	30.0%
TCTGAATATCACACTATTTC+CGG	-	chr6.2:37839239-37839258	MS.gene03506:intron	30.0%
TGAGATAGGATGATAATTCA+GGG	-	chr6.2:37839450-37839469	MS.gene03506:intron	30.0%
TTACATAGGTATTAAGCTGA+CGG	+	chr6.2:37838621-37838640	None:intergenic	30.0%
TTATAGACGCAGTTTCTAAT+TGG	+	chr6.2:37839599-37839618	None:intergenic	30.0%
TTGAGATAGGATGATAATTC+AGG	-	chr6.2:37839449-37839468	MS.gene03506:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.2	gene	37838394	37840681	37838394	ID=MS.gene03506
chr6.2	mRNA	37838394	37840681	37838394	ID=MS.gene03506.t1;Parent=MS.gene03506
chr6.2	exon	37840439	37840681	37840439	ID=MS.gene03506.t1.exon1;Parent=MS.gene03506.t1
chr6.2	CDS	37840439	37840681	37840439	ID=cds.MS.gene03506.t1;Parent=MS.gene03506.t1
chr6.2	exon	37838394	37839122	37838394	ID=MS.gene03506.t1.exon2;Parent=MS.gene03506.t1
chr6.2	CDS	37838394	37839122	37838394	ID=cds.MS.gene03506.t1;Parent=MS.gene03506.t1

Gene Sequence

>MS.gene03506

ATGAATTCTGCACCACAATCATCATCAGCCGCTGCTGCCGACGGAAGCAGAGAAGGTATGGCACCGTTTCTTCAGAAGACGTATGACATGGTAGATGATCCCACCACAGATGAGATCGTTTCTTGGAGCTCTGATAACAAAAGCTTCATCGTTTGGAACCCTCCTGAATTCTCTCGCGTTCTTCTCCCAACCTATTTCAAACACAACAATTTCTCCAGCTTCATCCGTCAGCTTAATACCTATGTAAGTCAATTCATGCTATAAGCTTCTTTTGATTATTTCATTGTTACTTTGTATGATCAATTAGTTATTGTCTTTCACTGTGTTTTTGCTTGATTGTTTGTTGTATTTGTATGATTTGGTTTCATTGTGTCTTCATCGAATTTCAATTAGTGGATATTGATTATTATGATGATCGTGATCATTAAGAGATTGATGAAAAAAATGATTAGTAAGATAAGAATTAGGTACAACTTTAGATTTGGATTATTTCACTGAGTTTAGTTGGAGATACAAAATGTTGAGACCTGAGAATGTTGAAAGATGGATGAGAAATTATAGTCTTGTATGGCACTTTTATTCTATGAAACATAAAACAGAGACACCGACAATGACATAATTCAATATAATCATATATGTCGTTGTCGGACACCGACGCCTTGACACACCTAATCCAAGGAGTGTCCTTGCTTCGTAGGTCTTAATTTTTGGTGTGGGTGTGTGAATTGGTGGGTGATTTAGGACTCTAAATGCACTCAAGAAAAACGATCAAAAAAATTTCTGCAAGCATCTGGATCTTGGTAATGATGGTGCATCGAATCATGAATAAAACCATCAATTTAGTCTCTGAATATCACACTATTTCCGGTTTCGTTCCTGAACTATATCAATATGATAAGTAGTTCCTAAAGTATATGAAATGTGTGAATTCAATCTTTGAAGTATACTGAAATTCGTCAATTTTGTCTCTAACATCTTAATTGTTGTGACTAAATTGATGAGTTTCATATACTTTAGAGACTATTTATCATGTTTCTATAGGGTAGGGACTGAATTTGAGATAGGATGATAATTCAGGGCCTAAATTGATGGTTTACATTCAGTGATCAAATAAATGTGCCATACAACTCGTCCTTGTTTTGGTAAAAGAGATAGAGCGATACAACAAAGAAGTTCACGAATGTGTCATGAACGGAAAATGTCCAATTAGAAACTGCGTCTATAAATATGATAAGTAGTTCCTGATTTTTATTGTTTAATTCTGCATCGTACACATCTCAAGCATCTAGGTTTTCATTTATTGAACTTGTTGAAATTGATATCTAAGTCTTAGATAGGGTTGAAAAATAGAAATCATGCACTTATGGCAATGATTAAAAACTAAGCCCCACCGCCAGATTTGCTTCCTGAAGTTTTTGGTTAATGAAGAATATTCTTGTAGAGATTTAATAGTAAATCGTTCAAAAAAGTTTGTAGGTCTTATGGCTGTAATGATAAATAATTGTTTAAGAATGTATGTTTTAATTTGTTACGGTTTATTTACGTGTGCTTTTTATCAGGGATTTCGAAAATCAGATCCTGATCGTTGGGAGTTTGCCAATGAAAAATTTATAAAAGATCAAAAACATCTTCTGACGGATATACACCGCAAGAAACCTATCCACAGTCATAGTCATCCTCCGGGTTCTACTGTAGATCCAGAAAGGGCAGCATTGGAGAAAGAAATAGAGAAGCTGTTTCGCGTGAAAAATGCCCTTCAATCCAAACTCCTAAGCTATAATTATCTTGAGACTGAAAAGCTTCAGCTGGAAGATTTTCAGCGGCGATTGGATGGCATGGAGAAGAGGCAGACAAATTTGCAGAACTTCTTTGAGAAGGCTCTTCAAGATTCTTTTATTGTTGAACTTCTTTCCCACAAAATCGAATCCATGGATTTGGAAACTTATAATAAGAAAAGGCGATTGTCTCAGGTTGATCGCACGCAGCCTGTTGCCGAAGGTAGCTTGGTTAATCCATGGAATATTGCCGAAGATATCTCAAATAAACTCCCTGAAGATGACGAAAGCCTGCAGAAAAATCTTTCTGACGGAGAACTGATAGGAATGCAGACAAGAACTGACCAAGCAATTACTGGGGCATCTTTTACTAATGTGGCTAATCCAAAGGAGGCTTCAGGTAACGTCCAAGTCGAAGCAGCTGCTCGGCACGGAGTGAATGATGTGTTTTGGGAACAATTTCTTACTGAAAGTCCATGCTGTTCAGACAATGAAGAGGAAATGTTCAACTAA

Protein sequence

>MS.gene03506.t1

MNSAPQSSSAAAADGSREGMAPFLQKTYDMVDDPTTDEIVSWSSDNKSFIVWNPPEFSRVLLPTYFKHNNFSSFIRQLNTYGFRKSDPDRWEFANEKFIKDQKHLLTDIHRKKPIHSHSHPPGSTVDPERAALEKEIEKLFRVKNALQSKLLSYNYLETEKLQLEDFQRRLDGMEKRQTNLQNFFEKALQDSFIVELLSHKIESMDLETYNKKRRLSQVDRTQPVAEGSLVNPWNIAEDISNKLPEDDESLQKNLSDGELIGMQTRTDQAITGASFTNVANPKEASGNVQVEAAARHGVNDVFWEQFLTESPCCSDNEEEMFN