AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene03506

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene03506.t1 MTR_6g043060 72.590 332 75 4 1 321 1 327 1.89e-169 474
MS.gene03506.t1 MTR_8g083100 76.871 294 29 4 23 277 23 316 1.06e-152 437
MS.gene03506.t1 MTR_8g083100 80.435 46 9 0 278 323 412 457 6.69e-17 81.6
MS.gene03506.t1 MTR_2g100680 57.595 316 92 6 1 276 12 325 1.31e-113 337
MS.gene03506.t1 MTR_6g044340 61.852 270 75 3 68 323 8 263 8.38e-109 317
MS.gene03506.t1 MTR_2g100670 56.446 287 101 5 1 269 14 294 1.41e-99 296
MS.gene03506.t1 MTR_2g100670 56.446 287 101 5 1 269 122 402 9.13e-98 295
MS.gene03506.t1 MTR_8g087540 37.466 363 157 9 15 319 5 355 3.50e-65 211
MS.gene03506.t1 MTR_5g029680 51.185 211 89 4 22 218 32 242 4.00e-64 211
MS.gene03506.t1 MTR_6g044430 51.779 253 48 6 100 319 14 225 3.53e-62 197
MS.gene03506.t1 MTR_6g044440 59.116 181 41 3 174 323 1 179 1.22e-58 187
MS.gene03506.t1 MTR_4g077970 45.455 209 102 3 20 216 10 218 1.45e-54 185
MS.gene03506.t1 MTR_1g102860 43.498 223 109 6 7 215 20 239 1.47e-50 171
MS.gene03506.t1 MTR_7g095680 45.894 207 102 4 19 215 46 252 3.46e-50 171
MS.gene03506.t1 MTR_3g104550 43.137 204 110 3 19 217 43 245 6.50e-49 167
MS.gene03506.t1 MTR_1g061170 41.000 200 115 2 20 216 47 246 1.04e-46 164
MS.gene03506.t1 MTR_1g071360 40.930 215 115 3 22 231 32 239 7.96e-46 159
MS.gene03506.t1 MTR_1g071360 40.930 215 115 3 22 231 29 236 1.24e-45 159
MS.gene03506.t1 MTR_3g101870 67.647 102 33 0 12 113 14 115 2.86e-45 158
MS.gene03506.t1 MTR_8g105780 48.205 195 88 6 20 201 20 214 1.66e-44 156
MS.gene03506.t1 MTR_5g017470 62.264 106 40 0 17 122 4 109 8.69e-43 149
MS.gene03506.t1 MTR_5g089170 69.892 93 28 0 21 113 24 116 2.16e-42 147
MS.gene03506.t1 MTR_5g010680 61.111 108 42 0 6 113 8 115 2.35e-42 150
MS.gene03506.t1 MTR_6g086805 40.187 214 101 2 20 219 9 209 1.49e-41 147
MS.gene03506.t1 MTR_6g044350 56.209 153 43 4 174 309 1 146 1.91e-41 141
MS.gene03506.t1 MTR_2g017890 59.259 108 44 0 12 119 5 112 9.89e-41 146
MS.gene03506.t1 MTR_0020s0020 63.441 93 34 0 21 113 32 124 2.33e-38 139
MS.gene03506.t1 MTR_1g100777 61.053 95 37 0 21 115 17 111 1.23e-37 136
MS.gene03506.t1 MTR_7g091370 50.442 113 56 0 1 113 1 113 4.26e-37 133
MS.gene03506.t1 MTR_4g088900 58.763 97 36 1 21 113 32 128 1.74e-34 125
MS.gene03506.t1 MTR_6g044510 64.103 78 26 1 246 323 13 88 3.01e-25 97.4
MS.gene03506.t1 MTR_5g047190 46.392 97 45 2 30 119 1 97 2.26e-22 90.1
MS.gene03506.t1 MTR_4g045757 62.319 69 25 1 12 79 3 71 2.19e-21 86.7
MS.gene03506.t1 MTR_6g044500 50.667 75 26 1 205 268 1 75 5.07e-14 67.0
MS.gene03506.t1 MTR_1g061170 30.189 159 100 4 61 216 1 151 9.41e-13 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene03506.t1 AT4G13980 56.710 231 98 2 1 229 1 231 7.73e-85 263
MS.gene03506.t1 AT1G32330 47.234 235 105 5 1 216 16 250 1.54e-58 196
MS.gene03506.t1 AT1G32330 47.234 235 105 5 1 216 16 250 1.92e-58 195
MS.gene03506.t1 AT4G17750 48.611 216 90 4 22 216 52 267 2.25e-58 196
MS.gene03506.t1 AT5G16820 47.788 226 100 6 20 228 25 249 2.40e-58 195
MS.gene03506.t1 AT5G16820 47.788 226 100 6 20 228 25 249 2.40e-58 195
MS.gene03506.t1 AT3G02990 43.348 233 119 4 8 228 9 240 4.18e-57 191
MS.gene03506.t1 AT4G18880 48.341 211 99 3 16 220 9 215 1.36e-51 175
MS.gene03506.t1 AT5G45710 34.756 328 167 6 14 319 5 307 4.61e-51 172
MS.gene03506.t1 AT5G45710 34.756 328 167 6 14 319 5 307 4.61e-51 172
MS.gene03506.t1 AT2G26150 43.961 207 108 4 19 217 41 247 1.68e-48 166
MS.gene03506.t1 AT2G26150 43.961 207 108 4 19 217 41 247 1.68e-48 166
MS.gene03506.t1 AT3G22830 40.741 216 115 3 19 221 58 273 2.84e-47 164
MS.gene03506.t1 AT5G03720 42.574 202 108 3 20 213 53 254 2.16e-46 162
MS.gene03506.t1 AT5G03720 42.574 202 108 3 20 213 53 254 2.16e-46 162
MS.gene03506.t1 AT1G46264 63.393 112 31 1 21 122 33 144 7.53e-45 156
MS.gene03506.t1 AT3G51910 40.758 211 108 5 22 226 29 228 1.67e-44 153
MS.gene03506.t1 AT3G24520 45.349 172 76 3 20 191 15 168 2.34e-43 152
MS.gene03506.t1 AT1G67970 44.792 192 93 5 20 201 17 205 1.05e-42 151
MS.gene03506.t1 AT5G43840 42.246 187 96 3 21 205 18 194 3.91e-41 145
MS.gene03506.t1 AT3G63350 38.806 201 114 3 5 196 3 203 6.20e-40 142
MS.gene03506.t1 AT5G54070 40.476 210 114 3 20 223 69 273 1.58e-39 142
MS.gene03506.t1 AT4G11660 62.000 100 38 0 14 113 51 150 5.16e-39 142
MS.gene03506.t1 AT4G36990 58.095 105 44 0 11 115 3 107 1.33e-38 138
MS.gene03506.t1 AT5G62020 50.420 119 58 1 1 118 1 119 2.01e-37 135
MS.gene03506.t1 AT2G41690 52.174 115 55 0 22 136 40 154 1.69e-36 132
MS.gene03506.t1 AT4G18870 46.591 88 47 0 22 109 146 233 2.69e-22 95.1
MS.gene03506.t1 AT4G18870 45.833 96 51 1 14 109 5 99 4.91e-22 94.4
MS.gene03506.t1 AT1G77570 42.391 92 49 3 19 106 22 113 2.60e-16 75.1
MS.gene03506.t1 AT2G26150 34.028 144 87 4 82 217 49 192 6.78e-15 74.3
MS.gene03506.t1 AT2G26150 34.028 144 87 4 82 217 49 192 6.78e-15 74.3
MS.gene03506.t1 AT4G19630 34.021 97 61 1 19 112 8 104 2.99e-13 66.2

Find 72 sgRNAs with CRISPR-Local

Find 147 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTCCAATGCTGCCCTTTC+TGG -0.010683 6.2:+37838962 None:intergenic
TGCAGGCTTTCGTCATCTTC+AGG 0.235577 6.2:+37838611 None:intergenic
ATAATTATAGCTTAGGAGTT+TGG 0.257010 6.2:+37838898 None:intergenic
GAAATTGTTGTGTTTGAAAT+AGG 0.280393 6.2:+37840469 None:intergenic
CAAAATCGAATCCATGGATT+TGG 0.313501 6.2:-37838744 MS.gene03506:CDS
CCACAGATGAGATCGTTTCT+TGG 0.319260 6.2:-37840556 MS.gene03506:CDS
ACGGAGTGAATGATGTGTTT+TGG 0.356521 6.2:-37838454 MS.gene03506:CDS
ATAACAAAAGCTTCATCGTT+TGG 0.362747 6.2:-37840526 MS.gene03506:CDS
AGAAGAACGCGAGAGAATTC+AGG 0.373908 6.2:+37840497 None:intergenic
AGAACTGACCAAGCAATTAC+TGG 0.383163 6.2:-37838548 MS.gene03506:CDS
ACGTTACCTGAAGCCTCCTT+TGG 0.398346 6.2:+37838500 None:intergenic
TAAGAAAAGGCGATTGTCTC+AGG 0.414889 6.2:-37838711 MS.gene03506:CDS
ACCAAGCTACCTTCGGCAAC+AGG 0.417304 6.2:+37838674 None:intergenic
AGCTTAGGAGTTTGGATTGA+AGG 0.419735 6.2:+37838906 None:intergenic
GCAGGCTTTCGTCATCTTCA+GGG 0.421260 6.2:+37838612 None:intergenic
CTTTCTGACGGAGAACTGAT+AGG 0.440803 6.2:-37838581 MS.gene03506:CDS
TCTCAAGATAATTATAGCTT+AGG 0.451761 6.2:+37838891 None:intergenic
TTCCCACAAAATCGAATCCA+TGG 0.458946 6.2:-37838750 MS.gene03506:CDS
GAGTTTATTTGAGATATCTT+CGG 0.461136 6.2:+37838634 None:intergenic
TGGAAACTTATAATAAGAAA+AGG 0.461564 6.2:-37838724 MS.gene03506:CDS
CCACAGTCATAGTCATCCTC+CGG 0.469987 6.2:-37838999 MS.gene03506:CDS
GCCGAGCAGCTGCTTCGACT+TGG 0.471786 6.2:+37838477 None:intergenic
AAAATCAGATCCTGATCGTT+GGG 0.473476 6.2:-37839092 MS.gene03506:CDS
GCTAATCCAAAGGAGGCTTC+AGG 0.474888 6.2:-37838506 MS.gene03506:CDS
TTGGCAAACTCCCAACGATC+AGG 0.478885 6.2:+37839082 None:intergenic
GCTTAGGAGTTTGGATTGAA+GGG 0.480417 6.2:+37838907 None:intergenic
ATTATAAGTTTCCAAATCCA+TGG 0.481800 6.2:+37838733 None:intergenic
GCCTGTTGCCGAAGGTAGCT+TGG 0.482063 6.2:-37838675 MS.gene03506:CDS
AGATCCAGAAAGGGCAGCAT+TGG 0.494908 6.2:-37838966 MS.gene03506:CDS
CGACGGAAGCAGAGAAGGTA+TGG 0.499479 6.2:-37840621 MS.gene03506:CDS
TGAGACTGAAAAGCTTCAGC+TGG 0.500611 6.2:-37838873 MS.gene03506:CDS
ATTAAGCTGACGGATGAAGC+TGG 0.509640 6.2:+37840445 None:intergenic
TTTGCAGAACTTCTTTGAGA+AGG 0.509914 6.2:-37838804 MS.gene03506:CDS
TGTTGTGTTTGAAATAGGTT+GGG 0.510228 6.2:+37840474 None:intergenic
TTGTTGTGTTTGAAATAGGT+TGG 0.516310 6.2:+37840473 None:intergenic
GAACTGACCAAGCAATTACT+GGG 0.527335 6.2:-37838547 MS.gene03506:CDS
TGGATTAACCAAGCTACCTT+CGG 0.533584 6.2:+37838667 None:intergenic
ATATCTTCGGCAATATTCCA+TGG 0.535929 6.2:+37838647 None:intergenic
TACTAATGTGGCTAATCCAA+AGG 0.539154 6.2:-37838516 MS.gene03506:CDS
GAAAATCAGATCCTGATCGT+TGG 0.543561 6.2:-37839093 MS.gene03506:CDS
TCATACGTCTTCTGAAGAAA+CGG 0.543831 6.2:+37840596 None:intergenic
TTCTACTGTAGATCCAGAAA+GGG 0.545124 6.2:-37838975 MS.gene03506:CDS
TCATCAGCCGCTGCTGCCGA+CGG 0.546634 6.2:-37840638 MS.gene03506:CDS
GTCGAAGCAGCTGCTCGGCA+CGG 0.548207 6.2:-37838473 MS.gene03506:CDS
TCAGCGGCGATTGGATGGCA+TGG 0.549084 6.2:-37838843 MS.gene03506:CDS
TCCAAGTCGAAGCAGCTGCT+CGG 0.549998 6.2:-37838478 MS.gene03506:CDS
CCGGAGGATGACTATGACTG+TGG 0.551542 6.2:+37838999 None:intergenic
TCTGCTTCCGTCGGCAGCAG+CGG 0.553780 6.2:+37840631 None:intergenic
GCTGCCGACGGAAGCAGAGA+AGG 0.554788 6.2:-37840626 MS.gene03506:CDS
CACAGTCATAGTCATCCTCC+GGG 0.559092 6.2:-37838998 MS.gene03506:CDS
GTTCTACTGTAGATCCAGAA+AGG 0.564434 6.2:-37838976 MS.gene03506:CDS
AAGGTAGCTTGGTTAATCCA+TGG 0.568191 6.2:-37838664 MS.gene03506:CDS
CGCACGCAGCCTGTTGCCGA+AGG 0.572450 6.2:-37838683 MS.gene03506:CDS
GACTGTGGATAGGTTTCTTG+CGG 0.574041 6.2:+37839014 None:intergenic
AAGATGCCCCAGTAATTGCT+TGG 0.581078 6.2:+37838540 None:intergenic
AGAAACGATCTCATCTGTGG+TGG 0.582151 6.2:+37840559 None:intergenic
GATTGGATGGCATGGAGAAG+AGG 0.590608 6.2:-37838835 MS.gene03506:CDS
TCTTCATTGTCTGAACAGCA+TGG 0.597736 6.2:+37838410 None:intergenic
GCAGCGGCTGATGATGATTG+TGG 0.600309 6.2:+37840647 None:intergenic
GGATGACTATGACTGTGGAT+AGG 0.617132 6.2:+37839004 None:intergenic
CATACCTTCTCTGCTTCCGT+CGG 0.623107 6.2:+37840622 None:intergenic
TTACATAGGTATTAAGCTGA+CGG 0.626576 6.2:+37840435 None:intergenic
GAAACGATCTCATCTGTGGT+GGG 0.626600 6.2:+37840560 None:intergenic
AGAACGCGAGAGAATTCAGG+AGG 0.628084 6.2:+37840500 None:intergenic
CCAAGAAACGATCTCATCTG+TGG 0.633047 6.2:+37840556 None:intergenic
ATGCTGTTCAGACAATGAAG+AGG 0.637659 6.2:-37838408 MS.gene03506:CDS
TAATGTGGCTAATCCAAAGG+AGG 0.646897 6.2:-37838513 MS.gene03506:CDS
GAACGCGAGAGAATTCAGGA+GGG 0.662504 6.2:+37840501 None:intergenic
TCTTCAGAAGACGTATGACA+TGG 0.665030 6.2:-37840591 MS.gene03506:CDS
TCTGGATCTACAGTAGAACC+CGG 0.676402 6.2:+37838980 None:intergenic
AACTGACCAAGCAATTACTG+GGG 0.734160 6.2:-37838546 MS.gene03506:CDS
GGATCTACAGTAGAACCCGG+AGG 0.764137 6.2:+37838983 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCTTTTATAAATTTTTCAT+TGG + chr6.2:37839993-37840012 None:intergenic 10.0%
!! AGAATTAAACAATAAAAATC+AGG + chr6.2:37839637-37839656 None:intergenic 15.0%
!!! ATGTATGTTTTAATTTGTTA+CGG - chr6.2:37839905-37839924 MS.gene03506:intron 15.0%
!! ATATTGAATTATGTCATTGT+CGG + chr6.2:37839001-37839020 None:intergenic 20.0%
!! TGATTAGTAAGATAAGAATT+AGG - chr6.2:37838839-37838858 MS.gene03506:CDS 20.0%
!! TGGAAACTTATAATAAGAAA+AGG - chr6.2:37840329-37840348 MS.gene03506:intron 20.0%
!! TTATCATATTGATATAGTTC+AGG + chr6.2:37839272-37839291 None:intergenic 20.0%
!!! ACTATTTATCATGTTTCTAT+AGG - chr6.2:37839413-37839432 MS.gene03506:intron 20.0%
!!! CTATTTATCATGTTTCTATA+GGG - chr6.2:37839414-37839433 MS.gene03506:intron 20.0%
!!! TTTGTTGTATTTGTATGATT+TGG - chr6.2:37838733-37838752 MS.gene03506:CDS 20.0%
! AAAAAAGTTTGTAGGTCTTA+TGG - chr6.2:37839856-37839875 MS.gene03506:intron 25.0%
! AAATAGAAATCATGCACTTA+TGG - chr6.2:37839738-37839757 MS.gene03506:intron 25.0%
! AATCGTTCAAAAAAGTTTGT+AGG - chr6.2:37839848-37839867 MS.gene03506:intron 25.0%
! ATAATCATATATGTCGTTGT+CGG - chr6.2:37839019-37839038 MS.gene03506:CDS 25.0%
! ATAATTATAGCTTAGGAGTT+TGG + chr6.2:37840158-37840177 None:intergenic 25.0%
! ATATTCAGAGACTAAATTGA+TGG + chr6.2:37839228-37839247 None:intergenic 25.0%
! ATTAGGTACAACTTTAGATT+TGG - chr6.2:37838856-37838875 MS.gene03506:CDS 25.0%
! ATTATAAGTTTCCAAATCCA+TGG + chr6.2:37840323-37840342 None:intergenic 25.0%
! ATTATTTCACTGAGTTTAGT+TGG - chr6.2:37838879-37838898 MS.gene03506:CDS 25.0%
! TCACACATTTCATATACTTT+AGG + chr6.2:37839301-37839320 None:intergenic 25.0%
! TCTCAAGATAATTATAGCTT+AGG + chr6.2:37840165-37840184 None:intergenic 25.0%
! TGAATGTAAACCATCAATTT+AGG + chr6.2:37839476-37839495 None:intergenic 25.0%
! TGATATCTAAGTCTTAGATA+GGG - chr6.2:37839710-37839729 MS.gene03506:intron 25.0%
! TTGATATCTAAGTCTTAGAT+AGG - chr6.2:37839709-37839728 MS.gene03506:intron 25.0%
!! GAAATTGTTGTGTTTGAAAT+AGG + chr6.2:37838587-37838606 None:intergenic 25.0%
!! GAGTTTATTTGAGATATCTT+CGG + chr6.2:37840422-37840441 None:intergenic 25.0%
!!! TGAGAAATTATAGTCTTGTA+TGG - chr6.2:37838942-37838961 MS.gene03506:CDS 25.0%
AAAAAATTTCTGCAAGCATC+TGG - chr6.2:37839165-37839184 MS.gene03506:intron 30.0%
AGATCAAAAACATCTTCTGA+CGG - chr6.2:37840009-37840028 MS.gene03506:intron 30.0%
ATAACAAAAGCTTCATCGTT+TGG - chr6.2:37838527-37838546 MS.gene03506:CDS 30.0%
CTTCATCGAATTTCAATTAG+TGG - chr6.2:37838767-37838786 MS.gene03506:CDS 30.0%
CTTCATTAACCAAAAACTTC+AGG + chr6.2:37839802-37839821 None:intergenic 30.0%
TCTGAATATCACACTATTTC+CGG - chr6.2:37839239-37839258 MS.gene03506:intron 30.0%
TGAGATAGGATGATAATTCA+GGG - chr6.2:37839450-37839469 MS.gene03506:intron 30.0%
TTACATAGGTATTAAGCTGA+CGG + chr6.2:37838621-37838640 None:intergenic 30.0%
TTATAGACGCAGTTTCTAAT+TGG + chr6.2:37839599-37839618 None:intergenic 30.0%
TTGAGATAGGATGATAATTC+AGG - chr6.2:37839449-37839468 MS.gene03506:intron 30.0%
! CTATCTCTTTTACCAAAACA+AGG + chr6.2:37839529-37839548 None:intergenic 30.0%
! TAGCATGAATTGACTTACAT+AGG + chr6.2:37838635-37838654 None:intergenic 30.0%
! TATCATGTTTCTATAGGGTA+GGG - chr6.2:37839419-37839438 MS.gene03506:intron 30.0%
! TGTTGTGTTTGAAATAGGTT+GGG + chr6.2:37838582-37838601 None:intergenic 30.0%
! TTATCATGTTTCTATAGGGT+AGG - chr6.2:37839418-37839437 MS.gene03506:intron 30.0%
! TTGTTGTGTTTGAAATAGGT+TGG + chr6.2:37838583-37838602 None:intergenic 30.0%
!! ATTTACGTGTGCTTTTTATC+AGG - chr6.2:37839931-37839950 MS.gene03506:intron 30.0%
!! TTTACGTGTGCTTTTTATCA+GGG - chr6.2:37839932-37839951 MS.gene03506:intron 30.0%
!!! TAGGTCTTAATTTTTGGTGT+GGG - chr6.2:37839088-37839107 MS.gene03506:CDS 30.0%
AAAACTTCAGGAAGCAAATC+TGG + chr6.2:37839790-37839809 None:intergenic 35.0%
AAAATCAGATCCTGATCGTT+GGG - chr6.2:37839961-37839980 MS.gene03506:intron 35.0%
AAATTAAGACCTACGAAGCA+AGG + chr6.2:37839081-37839100 None:intergenic 35.0%
ATATAGTTCAGGAACGAAAC+CGG + chr6.2:37839261-37839280 None:intergenic 35.0%
ATATCTTCGGCAATATTCCA+TGG + chr6.2:37840409-37840428 None:intergenic 35.0%
ATCCATCTTTCAACATTCTC+AGG + chr6.2:37838923-37838942 None:intergenic 35.0%
CAAAATCGAATCCATGGATT+TGG - chr6.2:37840309-37840328 MS.gene03506:intron 35.0%
CTGCAGAAAAATCTTTCTGA+CGG - chr6.2:37840460-37840479 MS.gene03506:CDS 35.0%
TAATTCAGGGCCTAAATTGA+TGG - chr6.2:37839463-37839482 MS.gene03506:intron 35.0%
TACTAATGTGGCTAATCCAA+AGG - chr6.2:37840537-37840556 MS.gene03506:CDS 35.0%
TTCTACTGTAGATCCAGAAA+GGG - chr6.2:37840078-37840097 MS.gene03506:intron 35.0%
! AATCCATGGATTCGATTTTG+TGG + chr6.2:37840309-37840328 None:intergenic 35.0%
! ATCCATGGATTCGATTTTGT+GGG + chr6.2:37840308-37840327 None:intergenic 35.0%
! GCTTCGTAGGTCTTAATTTT+TGG - chr6.2:37839082-37839101 MS.gene03506:CDS 35.0%
! TCATACGTCTTCTGAAGAAA+CGG + chr6.2:37838460-37838479 None:intergenic 35.0%
! TTTGCAGAACTTCTTTGAGA+AGG - chr6.2:37840249-37840268 MS.gene03506:intron 35.0%
!! GATTTGCTTCCTGAAGTTTT+TGG - chr6.2:37839790-37839809 MS.gene03506:intron 35.0%
!!! GTAGGTCTTAATTTTTGGTG+TGG - chr6.2:37839087-37839106 MS.gene03506:CDS 35.0%
AACTGACCAAGCAATTACTG+GGG - chr6.2:37840507-37840526 MS.gene03506:CDS 40.0%
AAGGTAGCTTGGTTAATCCA+TGG - chr6.2:37840389-37840408 MS.gene03506:intron 40.0%
AGAACTGACCAAGCAATTAC+TGG - chr6.2:37840505-37840524 MS.gene03506:CDS 40.0%
AGCTTAGGAGTTTGGATTGA+AGG + chr6.2:37840150-37840169 None:intergenic 40.0%
ATGCTGTTCAGACAATGAAG+AGG - chr6.2:37840645-37840664 MS.gene03506:CDS 40.0%
CAAAACAAGGACGAGTTGTA+TGG + chr6.2:37839516-37839535 None:intergenic 40.0%
GAAAATCAGATCCTGATCGT+TGG - chr6.2:37839960-37839979 MS.gene03506:intron 40.0%
GAACTGACCAAGCAATTACT+GGG - chr6.2:37840506-37840525 MS.gene03506:CDS 40.0%
GACCTGAGAATGTTGAAAGA+TGG - chr6.2:37838918-37838937 MS.gene03506:CDS 40.0%
GCTTAGGAGTTTGGATTGAA+GGG + chr6.2:37840149-37840168 None:intergenic 40.0%
GTTCACGAATGTGTCATGAA+CGG - chr6.2:37839566-37839585 MS.gene03506:intron 40.0%
GTTCTACTGTAGATCCAGAA+AGG - chr6.2:37840077-37840096 MS.gene03506:intron 40.0%
TAAGAAAAGGCGATTGTCTC+AGG - chr6.2:37840342-37840361 MS.gene03506:intron 40.0%
TAATGTGGCTAATCCAAAGG+AGG - chr6.2:37840540-37840559 MS.gene03506:CDS 40.0%
TCTTCAGAAGACGTATGACA+TGG - chr6.2:37838462-37838481 MS.gene03506:CDS 40.0%
TCTTCATTGTCTGAACAGCA+TGG + chr6.2:37840646-37840665 None:intergenic 40.0%
TGGATTAACCAAGCTACCTT+CGG + chr6.2:37840389-37840408 None:intergenic 40.0%
TTCCCACAAAATCGAATCCA+TGG - chr6.2:37840303-37840322 MS.gene03506:intron 40.0%
! ACGGAGTGAATGATGTGTTT+TGG - chr6.2:37840599-37840618 MS.gene03506:CDS 40.0%
! CGGAGTGAATGATGTGTTTT+GGG - chr6.2:37840600-37840619 MS.gene03506:CDS 40.0%
! CGTCAGAAAGATTTTTCTGC+AGG + chr6.2:37840462-37840481 None:intergenic 40.0%
! GTAGGGACTGAATTTGAGAT+AGG - chr6.2:37839436-37839455 MS.gene03506:intron 40.0%
! TGTGAATTGGTGGGTGATTT+AGG - chr6.2:37839113-37839132 MS.gene03506:intron 40.0%
! TTCAGCTGGAAGATTTTCAG+CGG - chr6.2:37840194-37840213 MS.gene03506:intron 40.0%
!! CATACAACTCGTCCTTGTTT+TGG - chr6.2:37839514-37839533 MS.gene03506:intron 40.0%
!! CATCTGGATCTTGGTAATGA+TGG - chr6.2:37839181-37839200 MS.gene03506:intron 40.0%
!! TGGGGCATCTTTTACTAATG+TGG - chr6.2:37840525-37840544 MS.gene03506:CDS 40.0%
AAGATGCCCCAGTAATTGCT+TGG + chr6.2:37840516-37840535 None:intergenic 45.0%
ACTTCAGGAAGCAAATCTGG+CGG + chr6.2:37839787-37839806 None:intergenic 45.0%
AGAAACGATCTCATCTGTGG+TGG + chr6.2:37838497-37838516 None:intergenic 45.0%
AGAAGAACGCGAGAGAATTC+AGG + chr6.2:37838559-37838578 None:intergenic 45.0%
CCAAGAAACGATCTCATCTG+TGG + chr6.2:37838500-37838519 None:intergenic 45.0%
CCACAGATGAGATCGTTTCT+TGG - chr6.2:37838497-37838516 MS.gene03506:CDS 45.0%
CGTACACATCTCAAGCATCT+AGG - chr6.2:37839661-37839680 MS.gene03506:intron 45.0%
CTTTCTGACGGAGAACTGAT+AGG - chr6.2:37840472-37840491 MS.gene03506:CDS 45.0%
GAAACGATCTCATCTGTGGT+GGG + chr6.2:37838496-37838515 None:intergenic 45.0%
GACTGTGGATAGGTTTCTTG+CGG + chr6.2:37840042-37840061 None:intergenic 45.0%
GGATGACTATGACTGTGGAT+AGG + chr6.2:37840052-37840071 None:intergenic 45.0%
TCTGGATCTACAGTAGAACC+CGG + chr6.2:37840076-37840095 None:intergenic 45.0%
TGAGACTGAAAAGCTTCAGC+TGG - chr6.2:37840180-37840199 MS.gene03506:intron 45.0%
TTCTGCAAGCATCTGGATCT+TGG - chr6.2:37839172-37839191 MS.gene03506:intron 45.0%
! ATTAAGCTGACGGATGAAGC+TGG + chr6.2:37838611-37838630 None:intergenic 45.0%
! TCCTTGGATTAGGTGTGTCA+AGG + chr6.2:37839054-37839073 None:intergenic 45.0%
! TTTGGTGTGGGTGTGTGAAT+TGG - chr6.2:37839100-37839119 MS.gene03506:CDS 45.0%
ACGTTACCTGAAGCCTCCTT+TGG + chr6.2:37840556-37840575 None:intergenic 50.0%
AGAACGCGAGAGAATTCAGG+AGG + chr6.2:37838556-37838575 None:intergenic 50.0%
AGATCCAGAAAGGGCAGCAT+TGG - chr6.2:37840087-37840106 MS.gene03506:intron 50.0%
CACAGTCATAGTCATCCTCC+GGG - chr6.2:37840055-37840074 MS.gene03506:intron 50.0%
CATACCTTCTCTGCTTCCGT+CGG + chr6.2:37838434-37838453 None:intergenic 50.0%
CCACAGTCATAGTCATCCTC+CGG - chr6.2:37840054-37840073 MS.gene03506:intron 50.0%
GAACGCGAGAGAATTCAGGA+GGG + chr6.2:37838555-37838574 None:intergenic 50.0%
GATTAGGTGTGTCAAGGCGT+CGG + chr6.2:37839048-37839067 None:intergenic 50.0%
GATTGGATGGCATGGAGAAG+AGG - chr6.2:37840218-37840237 MS.gene03506:intron 50.0%
GCAAGGACACTCCTTGGATT+AGG + chr6.2:37839064-37839083 None:intergenic 50.0%
GCAGGCTTTCGTCATCTTCA+GGG + chr6.2:37840444-37840463 None:intergenic 50.0%
GCCTTGACACACCTAATCCA+AGG - chr6.2:37839050-37839069 MS.gene03506:CDS 50.0%
GCTAATCCAAAGGAGGCTTC+AGG - chr6.2:37840547-37840566 MS.gene03506:CDS 50.0%
GTGTGGGTGTGTGAATTGGT+GGG - chr6.2:37839104-37839123 MS.gene03506:intron 50.0%
TACGAAGCAAGGACACTCCT+TGG + chr6.2:37839070-37839089 None:intergenic 50.0%
TGCAGGCTTTCGTCATCTTC+AGG + chr6.2:37840445-37840464 None:intergenic 50.0%
TTCTCCAATGCTGCCCTTTC+TGG + chr6.2:37840094-37840113 None:intergenic 50.0%
TTGGCAAACTCCCAACGATC+AGG + chr6.2:37839974-37839993 None:intergenic 50.0%
! GATTTTCAGCGGCGATTGGA+TGG - chr6.2:37840205-37840224 MS.gene03506:intron 50.0%
! GGAAGATTTTCAGCGGCGAT+TGG - chr6.2:37840201-37840220 MS.gene03506:intron 50.0%
!! AAGGAGTGTCCTTGCTTCGT+AGG - chr6.2:37839069-37839088 MS.gene03506:CDS 50.0%
ACCAAGCTACCTTCGGCAAC+AGG + chr6.2:37840382-37840401 None:intergenic 55.0%
AGGAAGCAAATCTGGCGGTG+GGG + chr6.2:37839782-37839801 None:intergenic 55.0%
CAGGAAGCAAATCTGGCGGT+GGG + chr6.2:37839783-37839802 None:intergenic 55.0%
CCGGAGGATGACTATGACTG+TGG + chr6.2:37840057-37840076 None:intergenic 55.0%
CGACGGAAGCAGAGAAGGTA+TGG - chr6.2:37838432-37838451 MS.gene03506:CDS 55.0%
GGATCTACAGTAGAACCCGG+AGG + chr6.2:37840073-37840092 None:intergenic 55.0%
GGTGTGGGTGTGTGAATTGG+TGG - chr6.2:37839103-37839122 MS.gene03506:CDS 55.0%
TCAGGAAGCAAATCTGGCGG+TGG + chr6.2:37839784-37839803 None:intergenic 55.0%
TCCAAGTCGAAGCAGCTGCT+CGG - chr6.2:37840575-37840594 MS.gene03506:CDS 55.0%
! GCAGCGGCTGATGATGATTG+TGG + chr6.2:37838409-37838428 None:intergenic 55.0%
GCCTGTTGCCGAAGGTAGCT+TGG - chr6.2:37840378-37840397 MS.gene03506:intron 60.0%
TCAGCGGCGATTGGATGGCA+TGG - chr6.2:37840210-37840229 MS.gene03506:intron 60.0%
GCCGAGCAGCTGCTTCGACT+TGG + chr6.2:37840579-37840598 None:intergenic 65.0%
GCTGCCGACGGAAGCAGAGA+AGG - chr6.2:37838427-37838446 MS.gene03506:CDS 65.0%
GTCGAAGCAGCTGCTCGGCA+CGG - chr6.2:37840580-37840599 MS.gene03506:CDS 65.0%
TCATCAGCCGCTGCTGCCGA+CGG - chr6.2:37838415-37838434 MS.gene03506:CDS 65.0%
TCTGCTTCCGTCGGCAGCAG+CGG + chr6.2:37838425-37838444 None:intergenic 65.0%
CGCACGCAGCCTGTTGCCGA+AGG - chr6.2:37840370-37840389 MS.gene03506:intron 70.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 37838394 37840681 37838394 ID=MS.gene03506
chr6.2 mRNA 37838394 37840681 37838394 ID=MS.gene03506.t1;Parent=MS.gene03506
chr6.2 exon 37840439 37840681 37840439 ID=MS.gene03506.t1.exon1;Parent=MS.gene03506.t1
chr6.2 CDS 37840439 37840681 37840439 ID=cds.MS.gene03506.t1;Parent=MS.gene03506.t1
chr6.2 exon 37838394 37839122 37838394 ID=MS.gene03506.t1.exon2;Parent=MS.gene03506.t1
chr6.2 CDS 37838394 37839122 37838394 ID=cds.MS.gene03506.t1;Parent=MS.gene03506.t1
Gene Sequence

>MS.gene03506

ATGAATTCTGCACCACAATCATCATCAGCCGCTGCTGCCGACGGAAGCAGAGAAGGTATGGCACCGTTTCTTCAGAAGACGTATGACATGGTAGATGATCCCACCACAGATGAGATCGTTTCTTGGAGCTCTGATAACAAAAGCTTCATCGTTTGGAACCCTCCTGAATTCTCTCGCGTTCTTCTCCCAACCTATTTCAAACACAACAATTTCTCCAGCTTCATCCGTCAGCTTAATACCTATGTAAGTCAATTCATGCTATAAGCTTCTTTTGATTATTTCATTGTTACTTTGTATGATCAATTAGTTATTGTCTTTCACTGTGTTTTTGCTTGATTGTTTGTTGTATTTGTATGATTTGGTTTCATTGTGTCTTCATCGAATTTCAATTAGTGGATATTGATTATTATGATGATCGTGATCATTAAGAGATTGATGAAAAAAATGATTAGTAAGATAAGAATTAGGTACAACTTTAGATTTGGATTATTTCACTGAGTTTAGTTGGAGATACAAAATGTTGAGACCTGAGAATGTTGAAAGATGGATGAGAAATTATAGTCTTGTATGGCACTTTTATTCTATGAAACATAAAACAGAGACACCGACAATGACATAATTCAATATAATCATATATGTCGTTGTCGGACACCGACGCCTTGACACACCTAATCCAAGGAGTGTCCTTGCTTCGTAGGTCTTAATTTTTGGTGTGGGTGTGTGAATTGGTGGGTGATTTAGGACTCTAAATGCACTCAAGAAAAACGATCAAAAAAATTTCTGCAAGCATCTGGATCTTGGTAATGATGGTGCATCGAATCATGAATAAAACCATCAATTTAGTCTCTGAATATCACACTATTTCCGGTTTCGTTCCTGAACTATATCAATATGATAAGTAGTTCCTAAAGTATATGAAATGTGTGAATTCAATCTTTGAAGTATACTGAAATTCGTCAATTTTGTCTCTAACATCTTAATTGTTGTGACTAAATTGATGAGTTTCATATACTTTAGAGACTATTTATCATGTTTCTATAGGGTAGGGACTGAATTTGAGATAGGATGATAATTCAGGGCCTAAATTGATGGTTTACATTCAGTGATCAAATAAATGTGCCATACAACTCGTCCTTGTTTTGGTAAAAGAGATAGAGCGATACAACAAAGAAGTTCACGAATGTGTCATGAACGGAAAATGTCCAATTAGAAACTGCGTCTATAAATATGATAAGTAGTTCCTGATTTTTATTGTTTAATTCTGCATCGTACACATCTCAAGCATCTAGGTTTTCATTTATTGAACTTGTTGAAATTGATATCTAAGTCTTAGATAGGGTTGAAAAATAGAAATCATGCACTTATGGCAATGATTAAAAACTAAGCCCCACCGCCAGATTTGCTTCCTGAAGTTTTTGGTTAATGAAGAATATTCTTGTAGAGATTTAATAGTAAATCGTTCAAAAAAGTTTGTAGGTCTTATGGCTGTAATGATAAATAATTGTTTAAGAATGTATGTTTTAATTTGTTACGGTTTATTTACGTGTGCTTTTTATCAGGGATTTCGAAAATCAGATCCTGATCGTTGGGAGTTTGCCAATGAAAAATTTATAAAAGATCAAAAACATCTTCTGACGGATATACACCGCAAGAAACCTATCCACAGTCATAGTCATCCTCCGGGTTCTACTGTAGATCCAGAAAGGGCAGCATTGGAGAAAGAAATAGAGAAGCTGTTTCGCGTGAAAAATGCCCTTCAATCCAAACTCCTAAGCTATAATTATCTTGAGACTGAAAAGCTTCAGCTGGAAGATTTTCAGCGGCGATTGGATGGCATGGAGAAGAGGCAGACAAATTTGCAGAACTTCTTTGAGAAGGCTCTTCAAGATTCTTTTATTGTTGAACTTCTTTCCCACAAAATCGAATCCATGGATTTGGAAACTTATAATAAGAAAAGGCGATTGTCTCAGGTTGATCGCACGCAGCCTGTTGCCGAAGGTAGCTTGGTTAATCCATGGAATATTGCCGAAGATATCTCAAATAAACTCCCTGAAGATGACGAAAGCCTGCAGAAAAATCTTTCTGACGGAGAACTGATAGGAATGCAGACAAGAACTGACCAAGCAATTACTGGGGCATCTTTTACTAATGTGGCTAATCCAAAGGAGGCTTCAGGTAACGTCCAAGTCGAAGCAGCTGCTCGGCACGGAGTGAATGATGTGTTTTGGGAACAATTTCTTACTGAAAGTCCATGCTGTTCAGACAATGAAGAGGAAATGTTCAACTAA
Protein sequence

>MS.gene03506.t1

MNSAPQSSSAAAADGSREGMAPFLQKTYDMVDDPTTDEIVSWSSDNKSFIVWNPPEFSRVLLPTYFKHNNFSSFIRQLNTYGFRKSDPDRWEFANEKFIKDQKHLLTDIHRKKPIHSHSHPPGSTVDPERAALEKEIEKLFRVKNALQSKLLSYNYLETEKLQLEDFQRRLDGMEKRQTNLQNFFEKALQDSFIVELLSHKIESMDLETYNKKRRLSQVDRTQPVAEGSLVNPWNIAEDISNKLPEDDESLQKNLSDGELIGMQTRTDQAITGASFTNVANPKEASGNVQVEAAARHGVNDVFWEQFLTESPCCSDNEEEMFN