AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene03507

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene03507.t1 MTR_6g043060 70.031 327 68 2 1 297 1 327 2.95e-164 459
MS.gene03507.t1 MTR_8g083100 74.820 278 26 1 23 256 23 300 1.35e-145 418
MS.gene03507.t1 MTR_8g083100 79.545 44 9 0 256 299 414 457 2.16e-15 76.6
MS.gene03507.t1 MTR_2g100680 57.143 301 82 3 1 256 12 310 1.42e-111 330
MS.gene03507.t1 MTR_6g044340 63.672 256 69 2 68 299 8 263 3.89e-109 317
MS.gene03507.t1 MTR_2g100670 56.272 279 93 5 4 254 16 293 9.68e-96 285
MS.gene03507.t1 MTR_2g100670 56.272 279 93 5 4 254 124 401 5.04e-94 285
MS.gene03507.t1 MTR_5g029680 50.711 211 90 4 22 218 32 242 8.64e-65 211
MS.gene03507.t1 MTR_8g087540 48.077 208 96 4 15 216 5 206 8.17e-58 191
MS.gene03507.t1 MTR_4g077970 44.976 209 103 3 20 216 10 218 6.75e-56 188
MS.gene03507.t1 MTR_6g044430 47.984 248 41 5 100 295 14 225 1.21e-55 180
MS.gene03507.t1 MTR_6g044440 53.631 179 30 2 174 299 1 179 6.87e-52 169
MS.gene03507.t1 MTR_1g102860 43.498 223 109 6 7 215 20 239 1.54e-51 172
MS.gene03507.t1 MTR_3g104550 35.762 302 168 9 19 297 43 341 5.06e-51 172
MS.gene03507.t1 MTR_7g095680 44.928 207 104 4 19 215 46 252 4.88e-50 169
MS.gene03507.t1 MTR_1g061170 40.500 200 116 2 20 216 47 246 3.07e-47 164
MS.gene03507.t1 MTR_1g071360 37.759 241 134 4 22 253 32 265 5.24e-47 161
MS.gene03507.t1 MTR_1g071360 37.759 241 134 4 22 253 29 262 5.50e-47 162
MS.gene03507.t1 MTR_8g105780 47.692 195 89 6 20 201 20 214 4.57e-45 157
MS.gene03507.t1 MTR_3g101870 66.667 102 34 0 12 113 14 115 4.98e-45 157
MS.gene03507.t1 MTR_6g086805 40.187 214 101 2 20 219 9 209 1.24e-42 150
MS.gene03507.t1 MTR_5g017470 60.185 108 43 0 15 122 2 109 2.39e-42 147
MS.gene03507.t1 MTR_5g089170 68.817 93 29 0 21 113 24 116 7.37e-42 145
MS.gene03507.t1 MTR_5g010680 59.259 108 44 0 6 113 8 115 1.75e-41 147
MS.gene03507.t1 MTR_2g017890 58.333 108 45 0 12 119 5 112 1.49e-40 145
MS.gene03507.t1 MTR_6g044350 53.425 146 34 3 174 285 1 146 6.05e-39 134
MS.gene03507.t1 MTR_0020s0020 62.366 93 35 0 21 113 32 124 6.40e-38 137
MS.gene03507.t1 MTR_7g091370 59.140 93 38 0 21 113 21 113 6.93e-38 134
MS.gene03507.t1 MTR_1g100777 60.000 95 38 0 21 115 17 111 3.63e-37 134
MS.gene03507.t1 MTR_4g088900 57.732 97 37 1 21 113 32 128 5.46e-34 123
MS.gene03507.t1 MTR_5g047190 45.361 97 46 2 30 119 1 97 7.40e-22 88.2
MS.gene03507.t1 MTR_6g044510 61.972 71 19 1 237 299 18 88 4.21e-21 85.9
MS.gene03507.t1 MTR_4g045757 65.000 60 21 0 20 79 12 71 1.37e-20 84.3
MS.gene03507.t1 MTR_1g061170 30.189 159 100 4 61 216 1 151 1.21e-13 70.9
MS.gene03507.t1 MTR_6g044500 46.341 82 18 3 205 261 1 81 6.03e-12 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene03507.t1 AT4G13980 56.410 234 100 2 1 232 1 234 3.13e-87 268
MS.gene03507.t1 AT3G02990 44.206 233 117 4 8 228 9 240 1.57e-60 199
MS.gene03507.t1 AT1G32330 49.057 212 94 3 1 198 16 227 5.32e-60 199
MS.gene03507.t1 AT1G32330 49.057 212 94 3 1 198 16 227 5.74e-60 199
MS.gene03507.t1 AT4G17750 47.685 216 92 4 22 216 52 267 4.44e-59 196
MS.gene03507.t1 AT5G16820 48.341 211 94 5 20 216 25 234 6.84e-59 196
MS.gene03507.t1 AT5G16820 48.341 211 94 5 20 216 25 234 6.84e-59 196
MS.gene03507.t1 AT5G45710 38.562 306 149 8 20 295 11 307 4.50e-54 179
MS.gene03507.t1 AT5G45710 38.562 306 149 8 20 295 11 307 4.50e-54 179
MS.gene03507.t1 AT4G18880 48.113 212 100 3 15 220 8 215 2.15e-52 177
MS.gene03507.t1 AT2G26150 43.243 222 118 4 19 232 41 262 1.66e-51 173
MS.gene03507.t1 AT2G26150 43.243 222 118 4 19 232 41 262 1.66e-51 173
MS.gene03507.t1 AT3G51910 41.706 211 106 4 22 226 29 228 7.54e-48 161
MS.gene03507.t1 AT3G22830 40.278 216 116 3 19 221 58 273 2.43e-47 164
MS.gene03507.t1 AT5G03720 43.889 180 98 2 20 196 53 232 2.49e-46 161
MS.gene03507.t1 AT5G03720 43.889 180 98 2 20 196 53 232 2.49e-46 161
MS.gene03507.t1 AT3G24520 46.243 173 73 3 20 191 15 168 2.23e-45 156
MS.gene03507.t1 AT1G46264 62.500 112 32 1 21 122 33 144 2.60e-44 154
MS.gene03507.t1 AT1G67970 44.271 192 94 5 20 201 17 205 4.79e-44 154
MS.gene03507.t1 AT5G43840 42.781 187 95 3 21 205 18 194 6.61e-43 149
MS.gene03507.t1 AT3G63350 40.000 185 109 2 19 201 25 209 8.09e-41 143
MS.gene03507.t1 AT5G54070 42.077 183 100 2 20 201 69 246 1.80e-40 144
MS.gene03507.t1 AT4G36990 45.455 176 62 4 11 153 2 176 7.16e-39 138
MS.gene03507.t1 AT4G11660 61.000 100 39 0 14 113 51 150 9.59e-39 140
MS.gene03507.t1 AT5G62020 50.420 119 58 1 1 118 1 119 6.78e-38 136
MS.gene03507.t1 AT2G41690 52.174 115 55 0 22 136 40 154 2.68e-37 133
MS.gene03507.t1 AT4G18870 46.591 88 47 0 22 109 146 233 1.25e-22 95.5
MS.gene03507.t1 AT4G18870 44.792 96 52 1 14 109 5 99 1.51e-21 92.4
MS.gene03507.t1 AT1G77570 42.391 92 49 3 19 106 22 113 9.14e-17 76.3
MS.gene03507.t1 AT2G26150 32.500 200 120 6 43 232 13 207 9.82e-17 79.0
MS.gene03507.t1 AT2G26150 32.500 200 120 6 43 232 13 207 9.82e-17 79.0
MS.gene03507.t1 AT4G19630 34.021 97 61 1 19 112 8 104 2.04e-13 66.6
MS.gene03507.t1 AT5G45710 29.091 220 117 9 106 295 1 211 3.37e-13 68.6
MS.gene03507.t1 AT5G45710 29.091 220 117 9 106 295 1 211 3.37e-13 68.6

Find 68 sgRNAs with CRISPR-Local

Find 125 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTCCAATGCTGCCCTTTC+TGG -0.010683 6.2:+37853082 None:intergenic
CTTCTTTGAGAAGGCTCTTC+AGG 0.211830 6.2:-37852915 MS.gene03507:CDS
GAAATTGCTGTGTTTGAAAT+AGG 0.280393 6.2:+37854291 None:intergenic
ATAATTATAGCTTAAGAGTT+TGG 0.284728 6.2:+37853018 None:intergenic
CCACAGATGAGATCGTTTCT+TGG 0.319260 6.2:-37854378 MS.gene03507:CDS
CAAAATTGAATCCATCGATT+TGG 0.349542 6.2:-37852864 MS.gene03507:CDS
AAGGAGTGAATGATGTGTTT+TGG 0.360172 6.2:-37852646 MS.gene03507:CDS
ATAACAAAAGCTTCATCGTT+TGG 0.362747 6.2:-37854348 MS.gene03507:CDS
AGAAGAACGCGAGAGAATTC+AGG 0.373908 6.2:+37854319 None:intergenic
ACATTACCTGAAGCCTCCTT+TGG 0.373921 6.2:+37852692 None:intergenic
TAAGAAAAGGCGATTGTCTC+AGG 0.414889 6.2:-37852831 MS.gene03507:CDS
ACCAAGCTACCTTCGGCAAC+AGG 0.417714 6.2:+37852794 None:intergenic
AGCTTAAGAGTTTGGATTGA+AGG 0.419735 6.2:+37853026 None:intergenic
TGCTGTGTTTGAAATAGGTT+GGG 0.448167 6.2:+37854296 None:intergenic
TCTGCTTGCGTCGGCAGCAG+TGG 0.456433 6.2:+37854453 None:intergenic
TTGCTGTGTTTGAAATAGGT+TGG 0.457272 6.2:+37854295 None:intergenic
GCCGAGCAGCTGCTTCGACT+TGG 0.459497 6.2:+37852669 None:intergenic
TGGAAACTTATAATAAGAAA+AGG 0.461564 6.2:-37852844 MS.gene03507:CDS
CCACAGTCATAGTCATCCTC+CGG 0.469987 6.2:-37853119 MS.gene03507:CDS
AAAATCAGATCCTGATCGTT+GGG 0.473476 6.2:-37853212 MS.gene03507:CDS
TTGGCAAACTCCCAACGATC+AGG 0.478885 6.2:+37853202 None:intergenic
GCTTAAGAGTTTGGATTGAA+GGG 0.480417 6.2:+37853027 None:intergenic
GCTGATCCAAAGGAGGCTTC+AGG 0.482903 6.2:-37852698 MS.gene03507:CDS
GAAGCCTCCTTTGGATCAGC+GGG 0.484852 6.2:+37852701 None:intergenic
CGACGCAAGCAGAGAAGGTA+TGG 0.492366 6.2:-37854443 MS.gene03507:CDS
AGATCCAGAAAGGGCAGCAT+TGG 0.494908 6.2:-37853086 MS.gene03507:CDS
TGAGACAGAAAAGCTTCAGC+TGG 0.500611 6.2:-37852993 MS.gene03507:CDS
ATTATAAGTTTCCAAATCGA+TGG 0.506141 6.2:+37852853 None:intergenic
ATTGAGCTGACGGATGAAGC+TGG 0.506271 6.2:+37854267 None:intergenic
TTTGCAGAACTTCTTTGAGA+AGG 0.509914 6.2:-37852924 MS.gene03507:CDS
GCCTGTTGCCGAAGGTAGCT+TGG 0.510527 6.2:-37852795 MS.gene03507:CDS
TTCTCTCAGAATCTTTCTGA+AGG 0.511282 6.2:-37852755 MS.gene03507:CDS
AACTGACCCCGCTGATCCAA+AGG 0.526560 6.2:-37852708 MS.gene03507:CDS
CTTTCTGAAGGAGAACTGAC+AGG 0.534056 6.2:-37852743 MS.gene03507:CDS
GTCGAAGCAGCTGCTCGGCA+AGG 0.540320 6.2:-37852665 MS.gene03507:CDS
AACAGCATGGACTTTCAGTA+AGG 0.541453 6.2:+37852615 None:intergenic
AAGGTCAACCAAGCTACCTT+CGG 0.541708 6.2:+37852787 None:intergenic
TCTGAGAGAAATTGCTAGGA+AGG 0.542451 6.2:+37852768 None:intergenic
TCATCGGCGATTGGAAGGCA+TGG 0.542569 6.2:-37852963 MS.gene03507:CDS
GAAAATCAGATCCTGATCGT+TGG 0.543561 6.2:-37853213 MS.gene03507:CDS
TCATACGTCTTCTGAAGAAA+CGG 0.543831 6.2:+37854418 None:intergenic
CCGGAGGATGACTATGACTG+TGG 0.551542 6.2:+37853119 None:intergenic
TCCAAGTCGAAGCAGCTGCT+CGG 0.556549 6.2:-37852670 MS.gene03507:CDS
CACAGTCATAGTCATCCTCC+GGG 0.559092 6.2:-37853118 MS.gene03507:CDS
TTCTGCTGTAGATCCAGAAA+GGG 0.565003 6.2:-37853095 MS.gene03507:CDS
AGATTCTGAGAGAAATTGCT+AGG 0.568077 6.2:+37852764 None:intergenic
GTTCTGCTGTAGATCCAGAA+AGG 0.569845 6.2:-37853096 MS.gene03507:CDS
GACTGTGGATAGGTTTCTTG+CGG 0.574041 6.2:+37853134 None:intergenic
GCTGCCGACGCAAGCAGAGA+AGG 0.576478 6.2:-37854448 MS.gene03507:CDS
AGAAACGATCTCATCTGTGG+TGG 0.582151 6.2:+37854381 None:intergenic
TGAAGCCTCCTTTGGATCAG+CGG 0.591974 6.2:+37852700 None:intergenic
GATTGGAAGGCATGGAGAAG+AGG 0.593047 6.2:-37852955 MS.gene03507:CDS
CACATGCAGCCTGTTGCCGA+AGG 0.596050 6.2:-37852803 MS.gene03507:CDS
TCTTCATTGTCTGAACAGCA+TGG 0.597736 6.2:+37852602 None:intergenic
TTACATAGGTATTGAGCTGA+CGG 0.598207 6.2:+37854257 None:intergenic
TCTGGATCTACAGCAGAACC+CGG 0.614712 6.2:+37853100 None:intergenic
GGATGACTATGACTGTGGAT+AGG 0.617132 6.2:+37853124 None:intergenic
CATACCTTCTCTGCTTGCGT+CGG 0.620839 6.2:+37854444 None:intergenic
GAAACGATCTCATCTGTGGT+GGG 0.626600 6.2:+37854382 None:intergenic
AGAACGCGAGAGAATTCAGG+AGG 0.628084 6.2:+37854322 None:intergenic
CCAAGAAACGATCTCATCTG+TGG 0.633047 6.2:+37854378 None:intergenic
ATGCTGTTCAGACAATGAAG+AGG 0.637659 6.2:-37852600 MS.gene03507:CDS
TGACCCCGCTGATCCAAAGG+AGG 0.662370 6.2:-37852705 MS.gene03507:CDS
GAACGCGAGAGAATTCAGGA+GGG 0.662504 6.2:+37854323 None:intergenic
TCTTCAGAAGACGTATGACA+TGG 0.665030 6.2:-37854413 MS.gene03507:CDS
GCAGTGGCTGATGATGATTG+TGG 0.706595 6.2:+37854469 None:intergenic
AAGCCTCCTTTGGATCAGCG+GGG 0.731334 6.2:+37852702 None:intergenic
GGATCTACAGCAGAACCCGG+AGG 0.744225 6.2:+37853103 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCTTTTATAAATTTTTCAT+TGG + chr6.2:37853887-37853906 None:intergenic 10.0%
!! ATGATTAAACAATAAAAATC+AGG + chr6.2:37853527-37853546 None:intergenic 15.0%
!! TTATCATATTTATATAGTTC+AGG + chr6.2:37853498-37853517 None:intergenic 15.0%
!!! ATGTATGTTTTAATTTGTTA+CGG - chr6.2:37853799-37853818 MS.gene03507:intron 15.0%
!! ATAATTATAGCTTAAGAGTT+TGG + chr6.2:37854052-37854071 None:intergenic 20.0%
!! ATATTCTTGTAGAGATTTAA+TGG - chr6.2:37853724-37853743 MS.gene03507:intron 20.0%
!! ATTATTTCATTGAGTTTAGT+TGG - chr6.2:37853071-37853090 MS.gene03507:CDS 20.0%
!! TGATTAGTAAGATAAGAATT+AGG - chr6.2:37853031-37853050 MS.gene03507:CDS 20.0%
!! TGGAAACTTATAATAAGAAA+AGG - chr6.2:37854223-37854242 MS.gene03507:intron 20.0%
!!! TTTGTTGTATTTGTATGATT+TGG - chr6.2:37852925-37852944 MS.gene03507:CDS 20.0%
! AAATAGAAATCATGCACTTA+TGG - chr6.2:37853639-37853658 MS.gene03507:intron 25.0%
! AATGGTAAATCGTTCAAAAT+AGG - chr6.2:37853742-37853761 MS.gene03507:intron 25.0%
! ATACTGAATTATGTCATTGT+CGG + chr6.2:37853228-37853247 None:intergenic 25.0%
! ATATTCAGAGACTAAATTGA+TGG + chr6.2:37853454-37853473 None:intergenic 25.0%
! ATTAGGAACAACTTTAGATT+TGG - chr6.2:37853048-37853067 MS.gene03507:CDS 25.0%
! ATTATAAGTTTCCAAATCGA+TGG + chr6.2:37854217-37854236 None:intergenic 25.0%
! CTTCATTAAACAAAAACTTC+AGG + chr6.2:37853703-37853722 None:intergenic 25.0%
! GATATTATAGTCTTCTTGTA+TGG - chr6.2:37853137-37853156 MS.gene03507:CDS 25.0%
! TGATATCTAAGTCTTAGATA+GGG - chr6.2:37853611-37853630 MS.gene03507:intron 25.0%
! TTCAGTATAATCATATGTGT+CGG - chr6.2:37853240-37853259 MS.gene03507:intron 25.0%
! TTGATATCTAAGTCTTAGAT+AGG - chr6.2:37853610-37853629 MS.gene03507:intron 25.0%
AAAAAAATTTCTGCAGCATC+TGG - chr6.2:37853391-37853410 MS.gene03507:intron 30.0%
AGATCAAAAACATCTTCTGA+CGG - chr6.2:37853903-37853922 MS.gene03507:intron 30.0%
ATAACAAAAGCTTCATCGTT+TGG - chr6.2:37852719-37852738 MS.gene03507:CDS 30.0%
ATATAGTTCAGGAACTAAAC+CGG + chr6.2:37853487-37853506 None:intergenic 30.0%
ATCGTTCAAAATAGGTCTTA+TGG - chr6.2:37853750-37853769 MS.gene03507:intron 30.0%
CTTCATCGAATTTCAATTAG+TGG - chr6.2:37852959-37852978 MS.gene03507:CDS 30.0%
TCTGAATATCACACTATTTC+CGG - chr6.2:37853465-37853484 MS.gene03507:intron 30.0%
! CAAAATTGAATCCATCGATT+TGG - chr6.2:37854203-37854222 MS.gene03507:intron 30.0%
! GAAATTGCTGTGTTTGAAAT+AGG + chr6.2:37852779-37852798 None:intergenic 30.0%
!! AATCGATGGATTCAATTTTG+CGG + chr6.2:37854203-37854222 None:intergenic 30.0%
!! ATTTACGTGTGCTTTTTATC+AGG - chr6.2:37853825-37853844 MS.gene03507:intron 30.0%
!! TTTACGTGTGCTTTTTATCA+GGG - chr6.2:37853826-37853845 MS.gene03507:intron 30.0%
AAAACTTCAGGAAGCAAATC+TGG + chr6.2:37853691-37853710 None:intergenic 35.0%
AAAATCAGATCCTGATCGTT+GGG - chr6.2:37853855-37853874 MS.gene03507:intron 35.0%
AAATTAAGACCTACGAAGCA+AGG + chr6.2:37853308-37853327 None:intergenic 35.0%
AGCTTAAGAGTTTGGATTGA+AGG + chr6.2:37854044-37854063 None:intergenic 35.0%
GACATGAGAATGTTGAAAGA+TGG - chr6.2:37853110-37853129 MS.gene03507:CDS 35.0%
GCTTAAGAGTTTGGATTGAA+GGG + chr6.2:37854043-37854062 None:intergenic 35.0%
TTCTCTCAGAATCTTTCTGA+AGG - chr6.2:37854312-37854331 MS.gene03507:CDS 35.0%
! AAGGAGTGAATGATGTGTTT+TGG - chr6.2:37854421-37854440 MS.gene03507:CDS 35.0%
! AGATTCTGAGAGAAATTGCT+AGG + chr6.2:37854306-37854325 None:intergenic 35.0%
! AGGAGTGAATGATGTGTTTT+GGG - chr6.2:37854422-37854441 MS.gene03507:CDS 35.0%
! GCTTCGTAGGTCTTAATTTT+CGG - chr6.2:37853309-37853328 MS.gene03507:intron 35.0%
! TAGCGTGAATTGACTTACAT+AGG + chr6.2:37852827-37852846 None:intergenic 35.0%
! TCATACGTCTTCTGAAGAAA+CGG + chr6.2:37852652-37852671 None:intergenic 35.0%
! TGCTGTGTTTGAAATAGGTT+GGG + chr6.2:37852774-37852793 None:intergenic 35.0%
! TGTGAATTGGTGGGTAATTT+AGG - chr6.2:37853340-37853359 MS.gene03507:intron 35.0%
! TTCAGCTGGAAGATTTTCAT+CGG - chr6.2:37854088-37854107 MS.gene03507:intron 35.0%
! TTGCTGTGTTTGAAATAGGT+TGG + chr6.2:37852775-37852794 None:intergenic 35.0%
! TTTGCAGAACTTCTTTGAGA+AGG - chr6.2:37854143-37854162 MS.gene03507:intron 35.0%
!! ATCGATGGATTCAATTTTGC+GGG + chr6.2:37854202-37854221 None:intergenic 35.0%
!! TAGGTCTTAATTTTCGGTGT+GGG - chr6.2:37853315-37853334 MS.gene03507:intron 35.0%
!! TTACATAGGTATTGAGCTGA+CGG + chr6.2:37852813-37852832 None:intergenic 35.0%
AACAGCATGGACTTTCAGTA+AGG + chr6.2:37854455-37854474 None:intergenic 40.0%
ATGCTGTTCAGACAATGAAG+AGG - chr6.2:37854467-37854486 MS.gene03507:CDS 40.0%
GAAAATCAGATCCTGATCGT+TGG - chr6.2:37853854-37853873 MS.gene03507:intron 40.0%
TAAGAAAAGGCGATTGTCTC+AGG - chr6.2:37854236-37854255 MS.gene03507:intron 40.0%
TCTGAGAGAAATTGCTAGGA+AGG + chr6.2:37854302-37854321 None:intergenic 40.0%
TCTTCAGAAGACGTATGACA+TGG - chr6.2:37852654-37852673 MS.gene03507:CDS 40.0%
TCTTCATTGTCTGAACAGCA+TGG + chr6.2:37854468-37854487 None:intergenic 40.0%
TTCGTTGTTTGTGATGTGTC+TGG + chr6.2:37853196-37853215 None:intergenic 40.0%
TTCTGCTGTAGATCCAGAAA+GGG - chr6.2:37853972-37853991 MS.gene03507:intron 40.0%
! GTAGGTCTTAATTTTCGGTG+TGG - chr6.2:37853314-37853333 MS.gene03507:intron 40.0%
!! CATCTGGATCTTGGTAATGA+TGG - chr6.2:37853407-37853426 MS.gene03507:intron 40.0%
AAGGTCAACCAAGCTACCTT+CGG + chr6.2:37854283-37854302 None:intergenic 45.0%
ACATTACCTGAAGCCTCCTT+TGG + chr6.2:37854378-37854397 None:intergenic 45.0%
ACTTCAGGAAGCAAATCTGG+CGG + chr6.2:37853688-37853707 None:intergenic 45.0%
AGAAACGATCTCATCTGTGG+TGG + chr6.2:37852689-37852708 None:intergenic 45.0%
AGAAGAACGCGAGAGAATTC+AGG + chr6.2:37852751-37852770 None:intergenic 45.0%
CCAAGAAACGATCTCATCTG+TGG + chr6.2:37852692-37852711 None:intergenic 45.0%
CCACAGATGAGATCGTTTCT+TGG - chr6.2:37852689-37852708 MS.gene03507:CDS 45.0%
CGTAGACATCTCAAGCATCT+AGG - chr6.2:37853562-37853581 MS.gene03507:intron 45.0%
GAAACGATCTCATCTGTGGT+GGG + chr6.2:37852688-37852707 None:intergenic 45.0%
GACTGTGGATAGGTTTCTTG+CGG + chr6.2:37853936-37853955 None:intergenic 45.0%
GGATGACTATGACTGTGGAT+AGG + chr6.2:37853946-37853965 None:intergenic 45.0%
GTTCTGCTGTAGATCCAGAA+AGG - chr6.2:37853971-37853990 MS.gene03507:intron 45.0%
TCCTCAGATTAGGTATGTCC+TGG + chr6.2:37853281-37853300 None:intergenic 45.0%
TGAGACAGAAAAGCTTCAGC+TGG - chr6.2:37854074-37854093 MS.gene03507:intron 45.0%
TTTCTGCAGCATCTGGATCT+TGG - chr6.2:37853398-37853417 MS.gene03507:intron 45.0%
! CTTCTTTGAGAAGGCTCTTC+AGG - chr6.2:37854152-37854171 MS.gene03507:intron 45.0%
! CTTTCTGAAGGAGAACTGAC+AGG - chr6.2:37854324-37854343 MS.gene03507:CDS 45.0%
! GATTTTCATCGGCGATTGGA+AGG - chr6.2:37854099-37854118 MS.gene03507:intron 45.0%
! GGAAGATTTTCATCGGCGAT+TGG - chr6.2:37854095-37854114 MS.gene03507:intron 45.0%
AGAACGCGAGAGAATTCAGG+AGG + chr6.2:37852748-37852767 None:intergenic 50.0%
AGATCCAGAAAGGGCAGCAT+TGG - chr6.2:37853981-37854000 MS.gene03507:intron 50.0%
CACAGTCATAGTCATCCTCC+GGG - chr6.2:37853949-37853968 MS.gene03507:intron 50.0%
CATACCTTCTCTGCTTGCGT+CGG + chr6.2:37852626-37852645 None:intergenic 50.0%
CCACAGTCATAGTCATCCTC+CGG - chr6.2:37853948-37853967 MS.gene03507:intron 50.0%
GAACGCGAGAGAATTCAGGA+GGG + chr6.2:37852747-37852766 None:intergenic 50.0%
GATTAGGTATGTCCTGGCGT+CGG + chr6.2:37853275-37853294 None:intergenic 50.0%
GCAAGGACACTCCTCAGATT+AGG + chr6.2:37853291-37853310 None:intergenic 50.0%
GCCAGGACATACCTAATCTG+AGG - chr6.2:37853277-37853296 MS.gene03507:intron 50.0%
GTGTGGGTGTGTGAATTGGT+GGG - chr6.2:37853331-37853350 MS.gene03507:intron 50.0%
TCTGGATCTACAGCAGAACC+CGG + chr6.2:37853970-37853989 None:intergenic 50.0%
TGAAGCCTCCTTTGGATCAG+CGG + chr6.2:37854370-37854389 None:intergenic 50.0%
TTCTCCAATGCTGCCCTTTC+TGG + chr6.2:37853988-37854007 None:intergenic 50.0%
TTGGCAAACTCCCAACGATC+AGG + chr6.2:37853868-37853887 None:intergenic 50.0%
! ATTGAGCTGACGGATGAAGC+TGG + chr6.2:37852803-37852822 None:intergenic 50.0%
! GATTGGAAGGCATGGAGAAG+AGG - chr6.2:37854112-37854131 MS.gene03507:intron 50.0%
! GCAGTGGCTGATGATGATTG+TGG + chr6.2:37852601-37852620 None:intergenic 50.0%
! TTCGGTGTGGGTGTGTGAAT+TGG - chr6.2:37853327-37853346 MS.gene03507:intron 50.0%
AACTGACCCCGCTGATCCAA+AGG - chr6.2:37854359-37854378 MS.gene03507:CDS 55.0%
AAGCCTCCTTTGGATCAGCG+GGG + chr6.2:37854368-37854387 None:intergenic 55.0%
ACCAAGCTACCTTCGGCAAC+AGG + chr6.2:37854276-37854295 None:intergenic 55.0%
AGGAAGCAAATCTGGCGGTG+GGG + chr6.2:37853683-37853702 None:intergenic 55.0%
CAGGAAGCAAATCTGGCGGT+GGG + chr6.2:37853684-37853703 None:intergenic 55.0%
CCGGAGGATGACTATGACTG+TGG + chr6.2:37853951-37853970 None:intergenic 55.0%
CGACGCAAGCAGAGAAGGTA+TGG - chr6.2:37852624-37852643 MS.gene03507:CDS 55.0%
GAAGCCTCCTTTGGATCAGC+GGG + chr6.2:37854369-37854388 None:intergenic 55.0%
GCTGATCCAAAGGAGGCTTC+AGG - chr6.2:37854369-37854388 MS.gene03507:CDS 55.0%
GGTGTGGGTGTGTGAATTGG+TGG - chr6.2:37853330-37853349 MS.gene03507:intron 55.0%
TCAGGAAGCAAATCTGGCGG+TGG + chr6.2:37853685-37853704 None:intergenic 55.0%
TCATCGGCGATTGGAAGGCA+TGG - chr6.2:37854104-37854123 MS.gene03507:intron 55.0%
TCCAAGTCGAAGCAGCTGCT+CGG - chr6.2:37854397-37854416 MS.gene03507:CDS 55.0%
!! GAGGAGTGTCCTTGCTTCGT+AGG - chr6.2:37853296-37853315 MS.gene03507:intron 55.0%
CACATGCAGCCTGTTGCCGA+AGG - chr6.2:37854264-37854283 MS.gene03507:CDS 60.0%
GCCTGTTGCCGAAGGTAGCT+TGG - chr6.2:37854272-37854291 MS.gene03507:CDS 60.0%
GGATCTACAGCAGAACCCGG+AGG + chr6.2:37853967-37853986 None:intergenic 60.0%
TGACCCCGCTGATCCAAAGG+AGG - chr6.2:37854362-37854381 MS.gene03507:CDS 60.0%
GCCGAGCAGCTGCTTCGACT+TGG + chr6.2:37854401-37854420 None:intergenic 65.0%
GCTGCCGACGCAAGCAGAGA+AGG - chr6.2:37852619-37852638 MS.gene03507:CDS 65.0%
GTCGAAGCAGCTGCTCGGCA+AGG - chr6.2:37854402-37854421 MS.gene03507:CDS 65.0%
! CGGTGTTAGACACCGACGCC+AGG - chr6.2:37853260-37853279 MS.gene03507:intron 65.0%
! TCTGCTTGCGTCGGCAGCAG+TGG + chr6.2:37852617-37852636 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 37852586 37854503 37852586 ID=MS.gene03507
chr6.2 mRNA 37852586 37854503 37852586 ID=MS.gene03507.t1;Parent=MS.gene03507
chr6.2 exon 37854261 37854503 37854261 ID=MS.gene03507.t1.exon1;Parent=MS.gene03507.t1
chr6.2 CDS 37854261 37854503 37854261 ID=cds.MS.gene03507.t1;Parent=MS.gene03507.t1
chr6.2 exon 37852586 37853242 37852586 ID=MS.gene03507.t1.exon2;Parent=MS.gene03507.t1
chr6.2 CDS 37852586 37853242 37852586 ID=cds.MS.gene03507.t1;Parent=MS.gene03507.t1
Gene Sequence

>MS.gene03507

ATGAATTCTGCACCACAATCATCATCAGCCACTGCTGCCGACGCAAGCAGAGAAGGTATGGCACCGTTTCTTCAGAAGACGTATGACATGGTAGATGATCCCACCACAGATGAGATCGTTTCTTGGAGCTCTGATAACAAAAGCTTCATCGTTTGGAACCCTCCTGAATTCTCTCGCGTTCTTCTCCCAACCTATTTCAAACACAGCAATTTCTCCAGCTTCATCCGTCAGCTCAATACCTATGTAAGTCAATTCACGCTATAAGCTTCTTTTGATTATTTCATTGTCACTTTGTATGATCAATTAGTTATTGTCTTTCACTGTGTTTTTGCTTGATTGTTTGTTGTATTTGTATGATTTGGTTTCATTGTGTCTTCATCGAATTTCAATTAGTGGATACTGATTATTATGATGATCATGATCATTAAGAGATTGATGAAAAAAATGATTAGTAAGATAAGAATTAGGAACAACTTTAGATTTGGATTATTTCATTGAGTTTAGTTGGAGATACAAAATGTTGAGACATGAGAATGTTGAAAGATGGACGAGATATTATAGTCTTCTTGTATGGCACTTTTATTCTATGAAACAGAAAACACAGACACCAGACACATCACAAACAACGAAACGCAAACACCGACAATGACATAATTCAGTATAATCATATGTGTCGGTGTTAGACACCGACGCCAGGACATACCTAATCTGAGGAGTGTCCTTGCTTCGTAGGTCTTAATTTTCGGTGTGGGTGTGTGAATTGGTGGGTAATTTAGGACTCTAAATGCACTCAAGAAAAACGATCAAAAAAATTTCTGCAGCATCTGGATCTTGGTAATGATGGTACATCGAATTATGAATAAAACCATCAATTTAGTCTCTGAATATCACACTATTTCCGGTTTAGTTCCTGAACTATATAAATATGATAAGTAGTTCCTGATTTTTATTGTTTAATCATGCTTCTCTTCTGCATCGTAGACATCTCAAGCATCTAGGTTTTCATTTATTGAACTTGTTGAAATTGATATCTAAGTCTTAGATAGGGTTGAAAAATAGAAATCATGCACTTATGGCAATGATTAAAAACTAAGCCCCACCGCCAGATTTGCTTCCTGAAGTTTTTGTTTAATGAAGAATATTCTTGTAGAGATTTAATGGTAAATCGTTCAAAATAGGTCTTATGGATGTAATGATAAATAATTGTTTAAGAATGTATGTTTTAATTTGTTACGGTTTATTTACGTGTGCTTTTTATCAGGGATTTCGAAAATCAGATCCTGATCGTTGGGAGTTTGCCAATGAAAAATTTATAAAAGATCAAAAACATCTTCTGACGGATATACACCGCAAGAAACCTATCCACAGTCATAGTCATCCTCCGGGTTCTGCTGTAGATCCAGAAAGGGCAGCATTGGAGAAAGAAATAGAAAAGCTGTCTCGCGAGAAAAATGCCCTTCAATCCAAACTCTTAAGCTATAATTATCTTGAGACAGAAAAGCTTCAGCTGGAAGATTTTCATCGGCGATTGGAAGGCATGGAGAAGAGGCAGACAAATTTGCAGAACTTCTTTGAGAAGGCTCTTCAGGATTCTTTCATTGTTGAACTTTTTTCCCGCAAAATTGAATCCATCGATTTGGAAACTTATAATAAGAAAAGGCGATTGTCTCAGGTTGATCACATGCAGCCTGTTGCCGAAGGTAGCTTGGTTGACCTTCCTAGCAATTTCTCTCAGAATCTTTCTGAAGGAGAACTGACAGGAATACAGACAAGAACTGACCCCGCTGATCCAAAGGAGGCTTCAGGTAATGTCCAAGTCGAAGCAGCTGCTCGGCAAGGAGTGAATGATGTGTTTTGGGAACAATTCCTTACTGAAAGTCCATGCTGTTCAGACAATGAAGAGGAAATGTTCAACTAA
Protein sequence

>MS.gene03507.t1

MNSAPQSSSATAADASREGMAPFLQKTYDMVDDPTTDEIVSWSSDNKSFIVWNPPEFSRVLLPTYFKHSNFSSFIRQLNTYGFRKSDPDRWEFANEKFIKDQKHLLTDIHRKKPIHSHSHPPGSAVDPERAALEKEIEKLSREKNALQSKLLSYNYLETEKLQLEDFHRRLEGMEKRQTNLQNFFEKALQDSFIVELFSRKIESIDLETYNKKRRLSQVDHMQPVAEGSLVDLPSNFSQNLSEGELTGIQTRTDPADPKEASGNVQVEAAARQGVNDVFWEQFLTESPCCSDNEEEMFN