AlfalfaGEDB | MS.gene03512

M. sativa cultivar XinJiangDaYe / MS.gene03512

KEGG: -
GO: -
PFAM: PF03634.16

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03512.t1	XP_027366958.1	60.8	130	50	1	6	134	69	198	9.50E-35	156.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03512.t1	Q9LT89	58.8	119	43	2	16	128	48	166	2.5e-28	126.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03512.t1	A0A1S2XYS3	67.0	115	38	0	20	134	70	184	5.8e-34	153.3

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene03512.t1	TF	TCP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03512.t1	MTR_1g101810	68.595	121	38	0	14	134	54	174	1.13e-51	167
MS.gene03512.t1	MTR_1g101810	68.595	121	38	0	14	134	84	204	3.05e-51	166
MS.gene03512.t1	MTR_8g033070	56.637	113	41	2	24	128	80	192	2.12e-35	124
MS.gene03512.t1	MTR_1g038650	52.577	97	44	1	7	101	15	111	1.51e-27	102
MS.gene03512.t1	MTR_7g028160	49.091	110	50	3	21	124	47	156	2.52e-27	102
MS.gene03512.t1	MTR_4g108370	61.446	83	26	1	14	90	81	163	4.16e-27	104
MS.gene03512.t1	MTR_1g114380	65.714	70	24	0	21	90	30	99	1.21e-26	100
MS.gene03512.t1	MTR_2g006150	69.697	66	20	0	21	86	127	192	1.25e-26	103
MS.gene03512.t1	MTR_2g006150	69.697	66	20	0	21	86	127	192	1.38e-26	102
MS.gene03512.t1	MTR_5g039600	52.083	96	40	1	18	113	61	150	4.04e-26	101

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03512.t1	AT2G45680	55.462	119	50	2	18	134	69	186	2.87e-37	130
MS.gene03512.t1	AT5G51910	53.676	136	53	3	5	130	33	168	1.96e-36	126
MS.gene03512.t1	AT5G51910	53.676	136	53	3	5	130	33	168	1.96e-36	126
MS.gene03512.t1	AT1G72010	69.118	68	21	0	19	86	58	125	1.40e-27	104
MS.gene03512.t1	AT5G08330	58.333	84	35	0	21	104	28	111	4.10e-27	101
MS.gene03512.t1	AT5G23280	60.759	79	29	1	8	86	25	101	4.22e-27	101
MS.gene03512.t1	AT1G69690	63.014	73	27	0	18	90	46	118	1.86e-26	101
MS.gene03512.t1	AT1G35560	67.647	68	22	0	21	88	52	119	7.28e-26	99.8
MS.gene03512.t1	AT3G47620	56.180	89	33	1	8	90	95	183	1.35e-25	100
MS.gene03512.t1	AT1G58100	66.667	66	22	0	21	86	57	122	2.62e-25	99.0

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Find 39 sgRNAs with CRISPR-Local

Find 40 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGACCGTCGCAAGAAGG+TGG	0.565336	6.2:-37935405	MS.gene03512:CDS
AAATGGTGAATTTGTGGATT+TGG	0.330314	6.2:-37935120	MS.gene03512:CDS
AGAAACAATAAAGTGGTTGT+TGG	0.479416	6.2:-37935294	MS.gene03512:CDS
AGAAGCAAGAGAGCTGCAAA+TGG	0.516567	6.2:-37935137	MS.gene03512:CDS
AGACCGTCGCAAGAAGGTGG+AGG	0.564734	6.2:-37935402	MS.gene03512:CDS
AGAGGATCTTTCAGTTGACA+AGG	0.553516	6.2:-37935340	MS.gene03512:CDS
AGCTGCAAATGGTGAATTTG+TGG	0.493216	6.2:-37935126	MS.gene03512:CDS
ATCAAAAGACCGTCGCAAGA+AGG	0.566989	6.2:-37935408	MS.gene03512:CDS
ATCATTGAAGCCACCGGCAC+TGG	0.391941	6.2:-37935254	MS.gene03512:CDS
ATCCTCTCTGCGCATGTTGT+CGG	0.457072	6.2:+37935356	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATGGTGAATTTGTGGATT+TGG	-	chr6.2:37935450-37935469	MS.gene03512:CDS	30.0%
AGAAACAATAAAGTGGTTGT+TGG	-	chr6.2:37935276-37935295	MS.gene03512:CDS	30.0%
AGAGGATCTTTCAGTTGACA+AGG	-	chr6.2:37935230-37935249	MS.gene03512:CDS	40.0%
AGCTGCAAATGGTGAATTTG+TGG	-	chr6.2:37935444-37935463	MS.gene03512:CDS	40.0%
CTCTCTTGCTTCTCTTACTT+GGG	+	chr6.2:37935426-37935445	None:intergenic	40.0%
CTGCTGGAGAAACAATAAAG+TGG	-	chr6.2:37935269-37935288	MS.gene03512:CDS	40.0%
GAGGATCTTTCAGTTGACAA+GGG	-	chr6.2:37935231-37935250	MS.gene03512:CDS	40.0%
TAAGGTTCCAACATCATTGG+CGG	-	chr6.2:37935378-37935397	MS.gene03512:CDS	40.0%
TCTCTTGCTTCTCTTACTTG+GGG	+	chr6.2:37935425-37935444	None:intergenic	40.0%
AGAAGCAAGAGAGCTGCAAA+TGG	-	chr6.2:37935433-37935452	MS.gene03512:CDS	45.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.2	gene	37935094	37935498	37935094	ID=MS.gene03512
chr6.2	mRNA	37935094	37935498	37935094	ID=MS.gene03512.t1;Parent=MS.gene03512
chr6.2	exon	37935094	37935498	37935094	ID=MS.gene03512.t1.exon1;Parent=MS.gene03512.t1
chr6.2	CDS	37935094	37935498	37935094	ID=cds.MS.gene03512.t1;Parent=MS.gene03512.t1

Gene Sequence

>MS.gene03512

ATGGAACAACAAATGTTGAACATGCTAGAGCAAGATATGACAATGACAGTGCCAGCAGCGAAGAAACCATCAAAAGACCGTCGCAAGAAGGTGGAGGGACGTGTTCCGAGAGTCACACTGCCGACAACATGCGCAGAGAGGATCTTTCAGTTGACAAGGGAGCTTGGTCACAAGTCTGCTGGAGAAACAATAAAGTGGTTGTTGGAACAAGCTGAACCTGCGATCATTGAAGCCACCGGCACTGGAATAACTCCGGCCATAGTCGTGTCAGAGGAAGGAAGGTTTAAGGTTCCAACATCATTGGCGGCAAGACCAAACGACCTAGGCGCCCCAAGTAAGAGAAGCAAGAGAGCTGCAAATGGTGAATTTGTGGATTTGGATGATCAAGCTTCAATTGCTTCTTGA

Protein sequence

>MS.gene03512.t1

MEQQMLNMLEQDMTMTVPAAKKPSKDRRKKVEGRVPRVTLPTTCAERIFQLTRELGHKSAGETIKWLLEQAEPAIIEATGTGITPAIVVSEEGRFKVPTSLAARPNDLGAPSKRSKRAANGEFVDLDDQASIAS