Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene035172.t1 | XP_003614339.1 | 97.7 | 300 | 7 | 0 | 1 | 300 | 1 | 300 | 1.20E-159 | 573.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene035172.t1 | Q9CAA4 | 55.7 | 291 | 110 | 3 | 1 | 290 | 1 | 273 | 1.9e-81 | 305.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene035172.t1 | G7JZB3 | 97.7 | 300 | 7 | 0 | 1 | 300 | 1 | 300 | 8.4e-160 | 573.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene035172.t1 | TF | bHLH |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene035172.t1 | MTR_5g048350 | 97.667 | 300 | 7 | 0 | 1 | 300 | 1 | 300 | 0.0 | 612 |
MS.gene035172.t1 | MTR_5g048350 | 94.667 | 300 | 7 | 1 | 1 | 300 | 1 | 291 | 0.0 | 585 |
MS.gene035172.t1 | MTR_4g110040 | 51.825 | 274 | 111 | 8 | 35 | 292 | 124 | 392 | 1.21e-74 | 250 |
MS.gene035172.t1 | MTR_4g110040 | 51.825 | 274 | 111 | 8 | 35 | 292 | 256 | 524 | 3.37e-73 | 250 |
MS.gene035172.t1 | MTR_2g087660 | 90.179 | 112 | 9 | 1 | 717 | 826 | 306 | 417 | 2.30e-59 | 208 |
MS.gene035172.t1 | MTR_7g017320 | 43.609 | 266 | 119 | 7 | 41 | 288 | 47 | 299 | 1.35e-50 | 181 |
MS.gene035172.t1 | MTR_4g050420 | 78.761 | 113 | 21 | 2 | 717 | 826 | 304 | 416 | 2.35e-48 | 177 |
MS.gene035172.t1 | MTR_7g017320 | 46.821 | 173 | 79 | 3 | 41 | 213 | 47 | 206 | 3.52e-39 | 147 |
MS.gene035172.t1 | MTR_4g051810 | 83.117 | 77 | 12 | 1 | 444 | 519 | 125 | 201 | 2.99e-37 | 142 |
MS.gene035172.t1 | MTR_2g099710 | 61.069 | 131 | 29 | 2 | 359 | 467 | 1 | 131 | 6.00e-35 | 142 |
MS.gene035172.t1 | MTR_5g088280 | 53.509 | 114 | 50 | 1 | 444 | 554 | 127 | 240 | 3.61e-29 | 119 |
MS.gene035172.t1 | MTR_5g088290 | 53.509 | 114 | 50 | 1 | 444 | 554 | 137 | 250 | 1.35e-28 | 118 |
MS.gene035172.t1 | MTR_5g088300 | 52.577 | 97 | 42 | 1 | 422 | 514 | 99 | 195 | 4.35e-27 | 113 |
MS.gene035172.t1 | MTR_8g006430 | 51.724 | 116 | 50 | 2 | 717 | 826 | 308 | 423 | 1.29e-24 | 107 |
MS.gene035172.t1 | MTR_5g093970 | 65.672 | 67 | 23 | 0 | 444 | 510 | 137 | 203 | 3.09e-23 | 102 |
MS.gene035172.t1 | MTR_3g104490 | 89.286 | 56 | 6 | 0 | 536 | 591 | 73 | 128 | 5.40e-23 | 105 |
MS.gene035172.t1 | MTR_8g469460 | 75.000 | 68 | 10 | 1 | 524 | 591 | 68 | 128 | 3.19e-22 | 102 |
MS.gene035172.t1 | MTR_1g033050 | 46.988 | 83 | 34 | 1 | 453 | 535 | 124 | 196 | 2.17e-17 | 84.3 |
MS.gene035172.t1 | MTR_4g130790 | 52.632 | 76 | 31 | 2 | 452 | 522 | 131 | 206 | 5.28e-17 | 82.4 |
MS.gene035172.t1 | MTR_6g042660 | 60.000 | 60 | 24 | 0 | 453 | 512 | 143 | 202 | 6.73e-16 | 80.1 |
MS.gene035172.t1 | MTR_3g104470 | 65.217 | 69 | 15 | 2 | 536 | 596 | 64 | 131 | 1.38e-15 | 81.6 |
MS.gene035172.t1 | MTR_6g024165 | 54.098 | 61 | 28 | 0 | 449 | 509 | 150 | 210 | 2.45e-15 | 78.6 |
MS.gene035172.t1 | MTR_6g042690 | 59.016 | 61 | 25 | 0 | 452 | 512 | 149 | 209 | 5.44e-15 | 77.4 |
MS.gene035172.t1 | MTR_5g075360 | 80.435 | 46 | 9 | 0 | 546 | 591 | 92 | 137 | 6.57e-15 | 79.3 |
MS.gene035172.t1 | MTR_5g075360 | 80.435 | 46 | 9 | 0 | 546 | 591 | 92 | 137 | 8.36e-15 | 79.0 |
MS.gene035172.t1 | MTR_3g104475 | 68.333 | 60 | 11 | 1 | 540 | 591 | 76 | 135 | 8.88e-15 | 78.6 |
MS.gene035172.t1 | MTR_6g025590 | 55.357 | 56 | 25 | 0 | 452 | 507 | 161 | 216 | 2.25e-14 | 73.9 |
MS.gene035172.t1 | MTR_7g102600 | 53.448 | 58 | 27 | 0 | 452 | 509 | 208 | 265 | 4.27e-14 | 75.5 |
MS.gene035172.t1 | MTR_6g088810 | 56.897 | 58 | 25 | 0 | 452 | 509 | 197 | 254 | 4.31e-14 | 75.5 |
MS.gene035172.t1 | MTR_8g102380 | 57.143 | 63 | 26 | 1 | 448 | 509 | 192 | 254 | 5.10e-14 | 74.7 |
MS.gene035172.t1 | MTR_8g102380 | 57.143 | 63 | 26 | 1 | 448 | 509 | 192 | 254 | 1.18e-13 | 73.9 |
MS.gene035172.t1 | MTR_5g075340 | 73.913 | 46 | 12 | 0 | 546 | 591 | 93 | 138 | 1.61e-13 | 75.1 |
MS.gene035172.t1 | MTR_8g469440 | 73.913 | 46 | 12 | 0 | 546 | 591 | 66 | 111 | 2.15e-13 | 72.4 |
MS.gene035172.t1 | MTR_8g036225 | 57.895 | 57 | 24 | 0 | 453 | 509 | 137 | 193 | 3.36e-13 | 72.0 |
MS.gene035172.t1 | MTR_7g092780 | 48.148 | 81 | 40 | 2 | 441 | 519 | 187 | 267 | 8.72e-13 | 71.2 |
MS.gene035172.t1 | MTR_4g124740 | 43.939 | 66 | 35 | 1 | 441 | 506 | 158 | 221 | 1.51e-12 | 70.1 |
MS.gene035172.t1 | MTR_3g104480 | 73.913 | 46 | 12 | 0 | 546 | 591 | 81 | 126 | 2.17e-12 | 71.2 |
MS.gene035172.t1 | MTR_2g105560 | 34.109 | 129 | 65 | 4 | 396 | 509 | 71 | 194 | 2.41e-12 | 69.7 |
MS.gene035172.t1 | MTR_7g011530 | 44.262 | 61 | 34 | 0 | 449 | 509 | 117 | 177 | 4.28e-12 | 68.6 |
MS.gene035172.t1 | MTR_1g086540 | 39.080 | 87 | 53 | 0 | 452 | 538 | 164 | 250 | 5.58e-12 | 68.6 |
MS.gene035172.t1 | MTR_3g069790 | 93.333 | 30 | 2 | 0 | 693 | 722 | 123 | 152 | 1.84e-11 | 67.0 |
MS.gene035172.t1 | MTR_6g012800 | 44.262 | 61 | 34 | 0 | 449 | 509 | 117 | 177 | 3.93e-11 | 65.5 |
MS.gene035172.t1 | MTR_7g110560 | 47.826 | 69 | 35 | 1 | 441 | 508 | 332 | 400 | 4.00e-11 | 67.0 |
MS.gene035172.t1 | MTR_5g012600 | 50.000 | 58 | 29 | 0 | 452 | 509 | 178 | 235 | 4.51e-11 | 65.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene035172.t1 | AT1G69010 | 55.670 | 291 | 110 | 3 | 1 | 290 | 1 | 273 | 5.66e-106 | 328 |
MS.gene035172.t1 | AT5G08130 | 39.759 | 249 | 121 | 5 | 41 | 288 | 153 | 373 | 4.01e-45 | 168 |
MS.gene035172.t1 | AT5G08130 | 39.357 | 249 | 123 | 5 | 41 | 288 | 153 | 374 | 2.02e-44 | 166 |
MS.gene035172.t1 | AT5G08130 | 39.759 | 249 | 121 | 5 | 41 | 288 | 273 | 493 | 5.90e-44 | 167 |
MS.gene035172.t1 | AT5G08130 | 39.759 | 249 | 121 | 5 | 41 | 288 | 277 | 497 | 6.35e-44 | 167 |
MS.gene035172.t1 | AT5G22060 | 68.142 | 113 | 33 | 2 | 717 | 826 | 307 | 419 | 1.35e-43 | 164 |
MS.gene035172.t1 | AT5G08130 | 39.357 | 249 | 123 | 5 | 41 | 288 | 273 | 494 | 3.30e-43 | 165 |
MS.gene035172.t1 | AT5G08130 | 39.357 | 249 | 123 | 5 | 41 | 288 | 273 | 494 | 3.30e-43 | 165 |
MS.gene035172.t1 | AT5G08130 | 39.357 | 249 | 123 | 5 | 41 | 288 | 277 | 498 | 3.55e-43 | 165 |
MS.gene035172.t1 | AT5G08130 | 39.357 | 249 | 123 | 5 | 41 | 288 | 273 | 494 | 3.81e-43 | 165 |
MS.gene035172.t1 | AT3G44110 | 72.174 | 115 | 27 | 2 | 717 | 826 | 306 | 420 | 8.74e-43 | 161 |
MS.gene035172.t1 | AT5G38860 | 39.338 | 272 | 131 | 6 | 30 | 296 | 19 | 261 | 2.11e-41 | 154 |
MS.gene035172.t1 | AT5G38860 | 46.203 | 158 | 73 | 2 | 30 | 185 | 19 | 166 | 4.05e-33 | 127 |
MS.gene035172.t1 | AT5G26810 | 59.649 | 57 | 23 | 0 | 453 | 509 | 147 | 203 | 4.18e-18 | 87.0 |
MS.gene035172.t1 | AT5G19730 | 58.621 | 58 | 24 | 0 | 452 | 509 | 201 | 258 | 3.92e-15 | 78.6 |
MS.gene035172.t1 | AT2G19150 | 61.404 | 57 | 22 | 0 | 453 | 509 | 147 | 203 | 5.15e-15 | 77.0 |
MS.gene035172.t1 | AT2G19150 | 61.404 | 57 | 22 | 0 | 453 | 509 | 147 | 203 | 9.16e-15 | 77.0 |
MS.gene035172.t1 | AT1G05310 | 56.897 | 58 | 25 | 0 | 452 | 509 | 200 | 257 | 3.62e-14 | 75.9 |
MS.gene035172.t1 | AT2G36700 | 46.667 | 60 | 32 | 0 | 450 | 509 | 149 | 208 | 1.88e-13 | 72.8 |
MS.gene035172.t1 | AT2G47280 | 54.386 | 57 | 26 | 0 | 453 | 509 | 142 | 198 | 5.26e-13 | 71.6 |
MS.gene035172.t1 | AT3G24130 | 39.394 | 99 | 50 | 1 | 453 | 551 | 144 | 232 | 6.48e-13 | 71.2 |
MS.gene035172.t1 | AT2G36710 | 38.000 | 100 | 51 | 2 | 450 | 549 | 198 | 286 | 1.52e-12 | 70.9 |
MS.gene035172.t1 | AT2G21610 | 45.714 | 70 | 38 | 0 | 440 | 509 | 140 | 209 | 2.02e-12 | 70.1 |
MS.gene035172.t1 | AT5G18990 | 38.679 | 106 | 51 | 2 | 418 | 509 | 90 | 195 | 2.13e-12 | 69.7 |
MS.gene035172.t1 | AT2G21610 | 45.714 | 70 | 38 | 0 | 440 | 509 | 145 | 214 | 2.43e-12 | 69.7 |
MS.gene035172.t1 | AT2G26140 | 67.391 | 46 | 15 | 0 | 546 | 591 | 84 | 129 | 3.82e-12 | 70.5 |
MS.gene035172.t1 | AT5G07420 | 47.458 | 59 | 31 | 0 | 448 | 506 | 170 | 228 | 8.31e-12 | 68.2 |
MS.gene035172.t1 | AT5G55590 | 43.678 | 87 | 47 | 2 | 452 | 537 | 198 | 283 | 9.76e-12 | 67.8 |
MS.gene035172.t1 | AT5G55590 | 43.478 | 92 | 49 | 3 | 448 | 537 | 193 | 283 | 1.56e-11 | 67.4 |
MS.gene035172.t1 | AT5G47500 | 34.328 | 134 | 82 | 4 | 452 | 584 | 176 | 304 | 1.71e-11 | 67.4 |
MS.gene035172.t1 | AT3G17060 | 46.552 | 58 | 31 | 0 | 452 | 509 | 152 | 209 | 2.33e-11 | 66.6 |
MS.gene035172.t1 | AT3G29090 | 44.262 | 61 | 34 | 0 | 449 | 509 | 118 | 178 | 9.23e-11 | 64.7 |
Find 181 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GATCGTGATCTATCATATTA+TGG | 0.225408 | 5.3:+35037698 | None:intergenic |
CTGTGATCAGAATTATTTAA+TGG | 0.225944 | 5.3:-35022876 | MS.gene035172:CDS |
TGGGTACCTTTGTTGGTGTT+AGG | 0.244455 | 5.3:+35040638 | None:intergenic |
CATGCCGAAGCCCTTGATTT+TGG | 0.246438 | 5.3:-35022214 | MS.gene035172:intron |
GAGGTTGACCGACAAAATTT+TGG | 0.267640 | 5.3:+35037815 | None:intergenic |
TGTACTTTCCCATCCTCTTC+AGG | 0.272008 | 5.3:-35037560 | MS.gene035172:CDS |
GAGTGGGTGTCATAAGATTT+TGG | 0.274189 | 5.3:-35025986 | MS.gene035172:CDS |
GTATGAGATCCCTCAATATT+TGG | 0.276214 | 5.3:+35038816 | None:intergenic |
AAATTTATGCAGGGAATAAT+AGG | 0.279676 | 5.3:-35023999 | MS.gene035172:intron |
GCCTTGAGCAAGTTGAATTC+TGG | 0.280287 | 5.3:-35026114 | MS.gene035172:intron |
TATTTCTCCCATCGTCATTA+AGG | 0.285243 | 5.3:+35025912 | None:intergenic |
CACAGCTTCATTCTTATTAG+AGG | 0.312925 | 5.3:-35038771 | MS.gene035172:intron |
CAGAACACACATGGAAATAA+TGG | 0.315521 | 5.3:-35024455 | MS.gene035172:CDS |
ATTTCAGTTCAAATTGATCT+TGG | 0.329165 | 5.3:-35034807 | MS.gene035172:CDS |
CCTGAACCATTCTTTACAAT+TGG | 0.334279 | 5.3:+35037793 | None:intergenic |
AATGCTCTAATCACGGATTC+AGG | 0.338266 | 5.3:+35023939 | None:intergenic |
GGTGGAGAGGCAACCTGATT+TGG | 0.349714 | 5.3:-35037650 | MS.gene035172:CDS |
TTTCCGGGAAACGGTGATAC+TGG | 0.349733 | 5.3:+35037769 | None:intergenic |
GGGTACCTTTGTTGGTGTTA+GGG | 0.362442 | 5.3:+35040639 | None:intergenic |
TCCTGGTGCTTAGTCCTTTG+AGG | 0.367972 | 5.3:-35022745 | MS.gene035172:intron |
TCTTGATCAAGTTAAGGCTT+TGG | 0.372096 | 5.3:-35021311 | MS.gene035172:CDS |
GGTGAAGTTGATTTCAACTT+TGG | 0.376419 | 5.3:-35024308 | MS.gene035172:CDS |
TTATTACCTCAAAATAAGAT+TGG | 0.382454 | 5.3:+35024279 | None:intergenic |
CCTTTCCGACCTCTGGTGCT+TGG | 0.384030 | 5.3:+35022505 | None:intergenic |
ATTCCCTTGCTCGCCAAATC+AGG | 0.384265 | 5.3:+35037637 | None:intergenic |
TATAAGAATTGTTATATTCA+AGG | 0.384278 | 5.3:-35024329 | MS.gene035172:CDS |
GCAGTAGCTGCTACTATAAT+CGG | 0.396291 | 5.3:-35024428 | MS.gene035172:CDS |
TCATCATCGCCGAAGGAAAC+CGG | 0.400578 | 5.3:+35022556 | None:intergenic |
TTCCTTTCATGAAAGGTCTC+TGG | 0.412565 | 5.3:+35021371 | None:intergenic |
TGAGTATGTTCAGTACTTAC+AGG | 0.412725 | 5.3:-35038647 | MS.gene035172:CDS |
AAGCATTAGTAAAAGTTGAT+AGG | 0.414135 | 5.3:-35023863 | MS.gene035172:CDS |
ATGAAAGGTCTCTGGTACAT+TGG | 0.419417 | 5.3:+35021379 | None:intergenic |
TGGGAGCCACTAAGCATTGT+TGG | 0.420920 | 5.3:+35037718 | None:intergenic |
AACAGATCCTTTCCGACCTC+TGG | 0.421775 | 5.3:+35022498 | None:intergenic |
TATTACCTCAAAATAAGATT+GGG | 0.423552 | 5.3:+35024280 | None:intergenic |
ATCTCTCCAACAATGCTTAG+TGG | 0.434167 | 5.3:-35037724 | MS.gene035172:CDS |
ATCGTGATCTATCATATTAT+GGG | 0.435013 | 5.3:+35037699 | None:intergenic |
AGGATCATAAGAGGCTTTCT+CGG | 0.436457 | 5.3:+35023959 | None:intergenic |
GTACTTTCCCATCCTCTTCA+GGG | 0.437126 | 5.3:-35037559 | MS.gene035172:CDS |
TTTCAGTTCAAATTGATCTT+GGG | 0.437219 | 5.3:-35034806 | MS.gene035172:CDS |
AGACACTTTGTGGGATGCAT+TGG | 0.439352 | 5.3:-35024363 | MS.gene035172:CDS |
CCAATTGTAAAGAATGGTTC+AGG | 0.442919 | 5.3:-35037793 | MS.gene035172:CDS |
CTGGTCATGCAAGCCTTCAT+AGG | 0.446151 | 5.3:+35025562 | None:intergenic |
CCTTCAGATTCCAAATATTG+AGG | 0.448909 | 5.3:-35038826 | MS.gene035172:intron |
GGAGCGTTCGACGCGCTTCA+AGG | 0.449202 | 5.3:-35022784 | MS.gene035172:CDS |
CTTCAGATTCCAAATATTGA+GGG | 0.451155 | 5.3:-35038825 | MS.gene035172:intron |
CAACTGTAAGTTCGTCCTGC+TGG | 0.451238 | 5.3:+35037482 | None:intergenic |
TCATCAAACTTTCCGGGAAA+CGG | 0.451349 | 5.3:+35037760 | None:intergenic |
GATAAAGCATACCAAAATCA+AGG | 0.451714 | 5.3:+35022203 | None:intergenic |
GGGTTATCAAGACACTTTGT+GGG | 0.453972 | 5.3:-35024372 | MS.gene035172:CDS |
GACACTTTGTGGGATGCATT+GGG | 0.456315 | 5.3:-35024362 | MS.gene035172:CDS |
GAACCATTCTTTACAATTGG+AGG | 0.459728 | 5.3:+35037796 | None:intergenic |
GCTGATAGTCCGGTTTCCTT+CGG | 0.463519 | 5.3:-35022565 | MS.gene035172:CDS |
GGAGATGAGGCTGTGCCACT+TGG | 0.463787 | 5.3:+35034765 | None:intergenic |
TGTTGTTGGTCGAGATAGAA+AGG | 0.466181 | 5.3:-35025878 | MS.gene035172:intron |
ACTCAAGCGCTACAGAGTGC+TGG | 0.473626 | 5.3:-35034852 | MS.gene035172:CDS |
GGTCCAGTATCACCGTTTCC+CGG | 0.476824 | 5.3:-35037772 | MS.gene035172:CDS |
TCTTCGGACAAAGGTATTTG+TGG | 0.478458 | 5.3:-35026171 | MS.gene035172:intron |
CAACCTCCAATTGTAAAGAA+TGG | 0.480239 | 5.3:-35037799 | MS.gene035172:CDS |
AAACATGTGGGTACCTTTGT+TGG | 0.480987 | 5.3:+35040631 | None:intergenic |
TCATTAAGGAGTGAACTTGC+TGG | 0.481303 | 5.3:+35025926 | None:intergenic |
CACGGATTCAGGATCATAAG+AGG | 0.485361 | 5.3:+35023950 | None:intergenic |
CAGGACGAACTTACAGTTGA+AGG | 0.485742 | 5.3:-35037478 | MS.gene035172:CDS |
TGCAGCTGGAGCTGATAGTC+CGG | 0.486818 | 5.3:-35022575 | MS.gene035172:CDS |
AAATATGAAGGCTCGTATCA+AGG | 0.490493 | 5.3:-35038613 | MS.gene035172:CDS |
GCAACCTGATTTGGCGAGCA+AGG | 0.490959 | 5.3:-35037641 | MS.gene035172:CDS |
AAGCAACCTAGAGTTGCAAC+AGG | 0.491647 | 5.3:-35025488 | MS.gene035172:CDS |
TTTGTTCTAGGAACGTGTTA+AGG | 0.492658 | 5.3:-35022805 | MS.gene035172:intron |
GGCCTACCTGTTGCAACTCT+AGG | 0.493031 | 5.3:+35025482 | None:intergenic |
CCACGTCTGTCAAGATAAGC+AGG | 0.495862 | 5.3:-35026137 | MS.gene035172:CDS |
TGATAGATCACGATCCGACT+CGG | 0.499986 | 5.3:-35037690 | MS.gene035172:CDS |
TGAGTCTCTTGATCAAGTTA+AGG | 0.500572 | 5.3:-35021317 | MS.gene035172:CDS |
TGGGTTATCAAGACACTTTG+TGG | 0.502212 | 5.3:-35024373 | MS.gene035172:CDS |
CACAAAGAGATAATTAAGAG+TGG | 0.502433 | 5.3:-35026003 | MS.gene035172:CDS |
ATAGCGCGTGGAGTTGTTGT+TGG | 0.503009 | 5.3:-35025892 | MS.gene035172:CDS |
CAAGGGAATTCCTCTGCCTA+TGG | 0.504233 | 5.3:-35037623 | MS.gene035172:CDS |
TTTCAAGGCAGAAGTGCAGC+TGG | 0.505124 | 5.3:-35022589 | MS.gene035172:CDS |
TTAACTTGATCAAGAGACTC+AGG | 0.506424 | 5.3:+35021319 | None:intergenic |
TCTTGGGAAGCGTGCAAAGA+AGG | 0.509091 | 5.3:-35034790 | MS.gene035172:CDS |
CATACCAAAATCAAGGGCTT+CGG | 0.509220 | 5.3:+35022210 | None:intergenic |
AGAGGATGCATTTAGTATTG+AGG | 0.509968 | 5.3:-35025541 | MS.gene035172:CDS |
CCTCTGTCGTGAAGTTACTA+AGG | 0.511005 | 5.3:-35022245 | MS.gene035172:CDS |
TTGAGTTGTTCACTCGTTGT+GGG | 0.512133 | 5.3:+35037505 | None:intergenic |
ATTTGTTGGGTTTACCTCAA+AGG | 0.513130 | 5.3:+35022731 | None:intergenic |
ACTTGGTCGGCAAGTAACTC+AGG | 0.515239 | 5.3:+35025461 | None:intergenic |
ATTAGTAAAAGTTGATAGGC+TGG | 0.515635 | 5.3:-35023859 | MS.gene035172:CDS |
ATGAAGGCTCGTATCAAGGC+TGG | 0.517535 | 5.3:-35038609 | MS.gene035172:CDS |
GTATTAATCCCTTACTTGGT+CGG | 0.518534 | 5.3:+35025448 | None:intergenic |
CTCAAGCGCTACAGAGTGCT+GGG | 0.520453 | 5.3:-35034851 | MS.gene035172:CDS |
TACCTCAATGTGATCAAAAG+AGG | 0.521201 | 5.3:-35038796 | MS.gene035172:CDS |
TACAAGGCAATCAATGATGA+AGG | 0.521364 | 5.3:-35021406 | MS.gene035172:CDS |
AACTGTGATACAGACCTTGC+TGG | 0.524309 | 5.3:+35021277 | None:intergenic |
ATATTGTTCATATGCTAAGT+AGG | 0.534827 | 5.3:-35025589 | MS.gene035172:CDS |
GGTTATTGCAGATTCTTACA+AGG | 0.535096 | 5.3:-35021422 | MS.gene035172:intron |
TCAATACTAAATGCATCCTC+TGG | 0.535882 | 5.3:+35025543 | None:intergenic |
TTGCCTACAACAATGAAAGC+AGG | 0.539094 | 5.3:-35040737 | None:intergenic |
GATAGATCACGATCCGACTC+GGG | 0.540435 | 5.3:-35037689 | MS.gene035172:CDS |
GGTGTTAGGGGCAGAGCAAG+TGG | 0.540953 | 5.3:+35040652 | None:intergenic |
AGATGGGAAAGCTACTGATA+AGG | 0.542435 | 5.3:-35039587 | MS.gene035172:CDS |
AAACAGTTCCCTGAAGAGGA+TGG | 0.542486 | 5.3:+35037551 | None:intergenic |
GTTGAGTTGTTCACTCGTTG+TGG | 0.544799 | 5.3:+35037504 | None:intergenic |
AACCGTCGAAGTTGATGCCA+TGG | 0.544835 | 5.3:-35038579 | MS.gene035172:CDS |
ACCTCAAAGGACTAAGCACC+AGG | 0.545970 | 5.3:+35022744 | None:intergenic |
TGGAGACAATTCTGCCAGCA+AGG | 0.546425 | 5.3:-35021291 | MS.gene035172:CDS |
CTAAGTAGGATGTCCTATGA+AGG | 0.550527 | 5.3:-35025575 | MS.gene035172:CDS |
TCTGTTCCTGTCAGAAGTGA+TGG | 0.550958 | 5.3:-35037583 | MS.gene035172:CDS |
AGGATGAAAGAAATTGCTCA+TGG | 0.553009 | 5.3:-35025521 | MS.gene035172:CDS |
GGTACCTTTGTTGGTGTTAG+GGG | 0.554478 | 5.3:+35040640 | None:intergenic |
GAATCTTCACAGTTCACTCC+TGG | 0.554707 | 5.3:-35022762 | MS.gene035172:CDS |
TTGAAGAAGAGACAAGAAGA+AGG | 0.558667 | 5.3:-35021201 | MS.gene035172:CDS |
ACCCATGGCATCAACTTCGA+CGG | 0.559522 | 5.3:+35038577 | None:intergenic |
TCTGTATACCTTGGGAGATG+AGG | 0.560824 | 5.3:+35034752 | None:intergenic |
TACCAGAGACCTTTCATGAA+AGG | 0.560830 | 5.3:-35021373 | MS.gene035172:CDS |
AACAGTTCCCTGAAGAGGAT+GGG | 0.561389 | 5.3:+35037552 | None:intergenic |
TCGGACAAAGGTATTTGTGG+TGG | 0.562124 | 5.3:-35026168 | MS.gene035172:intron |
ACCAGAATTCAACTTGCTCA+AGG | 0.564645 | 5.3:+35026113 | None:intergenic |
AGATTGAATTGTGAAGAGTA+TGG | 0.566056 | 5.3:-35026907 | MS.gene035172:intron |
ATCTCGAGTGTATACTCCCA+AGG | 0.571871 | 5.3:-35037442 | MS.gene035172:CDS |
ACTTTCAAATGCTCTAATCA+CGG | 0.577055 | 5.3:+35023932 | None:intergenic |
CCAAGCACCAGAGGTCGGAA+AGG | 0.579149 | 5.3:-35022505 | MS.gene035172:CDS |
ACATTCAGTTGATTGTGCAT+CGG | 0.585244 | 5.3:+35037528 | None:intergenic |
ATGTTTGCATGCATAGCCAT+AGG | 0.589737 | 5.3:+35037607 | None:intergenic |
GATCCGACTCGGGATATTGT+CGG | 0.590573 | 5.3:-35037679 | MS.gene035172:CDS |
CAACCTGATTTGGCGAGCAA+GGG | 0.591521 | 5.3:-35037640 | MS.gene035172:CDS |
ACAGTTGACAGACATGGAGC+TGG | 0.595684 | 5.3:-35021260 | MS.gene035172:CDS |
GAAGAAGCAAGATAAATGAG+AGG | 0.595996 | 5.3:-35039522 | MS.gene035172:intron |
GGCATCTTCATCATCGCCGA+AGG | 0.596640 | 5.3:+35022549 | None:intergenic |
TCGGAAACAGTTCCCTGAAG+AGG | 0.597102 | 5.3:+35037547 | None:intergenic |
ATAAAGCATACCAAAATCAA+GGG | 0.599353 | 5.3:+35022204 | None:intergenic |
GTTCACTCCTTAATGACGAT+GGG | 0.599830 | 5.3:-35025919 | MS.gene035172:CDS |
TGCCTACAACAATGAAAGCA+GGG | 0.600473 | 5.3:-35040736 | None:intergenic |
ACAAAGAGATAATTAAGAGT+GGG | 0.601166 | 5.3:-35026002 | MS.gene035172:CDS |
AAAGAATCTGTATGAAGAGA+TGG | 0.602453 | 5.3:+35023906 | None:intergenic |
GAGTGAACAACTCAACCAGC+AGG | 0.605106 | 5.3:-35037497 | MS.gene035172:CDS |
GCATGCATAGCCATAGGCAG+AGG | 0.609045 | 5.3:+35037613 | None:intergenic |
TGTACTCTTTGAGCACCACC+AGG | 0.609997 | 5.3:+35021136 | None:intergenic |
ACCTCAATGTGATCAAAAGA+GGG | 0.612540 | 5.3:-35038795 | MS.gene035172:CDS |
AGCTCAAAACCAAGCACCAG+AGG | 0.612912 | 5.3:-35022514 | MS.gene035172:CDS |
AGTACACCATCACTTCTGAC+AGG | 0.614723 | 5.3:+35037577 | None:intergenic |
GATGAAGATGATGAGATGCC+TGG | 0.615030 | 5.3:-35021154 | MS.gene035172:CDS |
AGAAACTAACAAATCTGCGA+AGG | 0.616448 | 5.3:+35022419 | None:intergenic |
GGATGAAAGAAATTGCTCAT+GGG | 0.619244 | 5.3:-35025520 | MS.gene035172:CDS |
AACATTCTGTAACGGAGCAG+CGG | 0.620536 | 5.3:-35039546 | MS.gene035172:CDS |
AGTTCACTCCTTAATGACGA+TGG | 0.623286 | 5.3:-35025920 | MS.gene035172:CDS |
TGGCACAGCCTCATCTCCCA+AGG | 0.623367 | 5.3:-35034760 | MS.gene035172:intron |
ACCGTCGAAGTTGATGCCAT+GGG | 0.624180 | 5.3:-35038578 | MS.gene035172:intron |
AAGGCAGCAAGCTCAGCAAG+AGG | 0.624868 | 5.3:-35021182 | MS.gene035172:CDS |
AAGATCGAAACATTCTGTAA+CGG | 0.625212 | 5.3:-35039554 | MS.gene035172:CDS |
GGATATTGTCGGCAAGACGG+TGG | 0.627342 | 5.3:-35037668 | MS.gene035172:CDS |
AGAGAAGACTAATATCGTGA+TGG | 0.628417 | 5.3:+35022458 | None:intergenic |
TGTATCACAGTTGACAGACA+TGG | 0.631121 | 5.3:-35021266 | MS.gene035172:CDS |
GACGAACTTACAGTTGAAGG+AGG | 0.634609 | 5.3:-35037475 | MS.gene035172:CDS |
CAAAACCAAGCACCAGAGGT+CGG | 0.635046 | 5.3:-35022510 | MS.gene035172:CDS |
TCGGGATATTGTCGGCAAGA+CGG | 0.635071 | 5.3:-35037671 | MS.gene035172:CDS |
GGAAGAATACTGATGAGAGG+TGG | 0.635557 | 5.3:+35024145 | None:intergenic |
ATGTTCAGTACTTACAGGAG+AGG | 0.638295 | 5.3:-35038642 | MS.gene035172:CDS |
ACTTTACATTAATTTCGCTG+TGG | 0.639819 | 5.3:-35021347 | MS.gene035172:CDS |
CACACATGGAAATAATGGAA+AGG | 0.640307 | 5.3:-35024450 | MS.gene035172:CDS |
TGCTGGGTTAGATCTGTCAA+AGG | 0.641347 | 5.3:-35034835 | MS.gene035172:CDS |
TCTTCCTGACTGCAAAACTG+AGG | 0.645676 | 5.3:-35024128 | MS.gene035172:intron |
TTGTCGGCAAGACGGTGGAG+AGG | 0.652023 | 5.3:-35037663 | MS.gene035172:CDS |
TGTTCAGTACTTACAGGAGA+GGG | 0.653015 | 5.3:-35038641 | MS.gene035172:CDS |
TCTCGAGTGTATACTCCCAA+GGG | 0.653032 | 5.3:-35037441 | MS.gene035172:intron |
CCTGCTTATCTTGACAGACG+TGG | 0.656536 | 5.3:+35026137 | None:intergenic |
GTGTAATTGCAGAACACACA+TGG | 0.660482 | 5.3:-35024464 | MS.gene035172:intron |
TCAGGAAGAATACTGATGAG+AGG | 0.667501 | 5.3:+35024142 | None:intergenic |
CATGGAGCTGGATGAGTGTG+AGG | 0.667513 | 5.3:-35021248 | MS.gene035172:CDS |
TAGTAACTTCACGACAGAGG+TGG | 0.668692 | 5.3:+35022248 | None:intergenic |
TTGCCGACAATATCCCGAGT+CGG | 0.672673 | 5.3:+35037676 | None:intergenic |
ATGAAGGCTTGCATGACCAG+AGG | 0.673176 | 5.3:-35025559 | MS.gene035172:CDS |
CACGTCTGTCAAGATAAGCA+GGG | 0.673248 | 5.3:-35026136 | MS.gene035172:CDS |
ACGAACTTACAGTTGAAGGA+GGG | 0.673949 | 5.3:-35037474 | MS.gene035172:CDS |
CCTTAGTAACTTCACGACAG+AGG | 0.686364 | 5.3:+35022245 | None:intergenic |
TACTGATGAGAGGTGGAGTG+TGG | 0.692327 | 5.3:+35024152 | None:intergenic |
AACCTAGAGTTGCAACAGGT+AGG | 0.693116 | 5.3:-35025484 | MS.gene035172:CDS |
TAACTTGATCAAGAGACTCA+GGG | 0.698525 | 5.3:+35021320 | None:intergenic |
TCTGCCCCTAACACCAACAA+AGG | 0.700951 | 5.3:-35040644 | MS.gene035172:intron |
ACGATGGGAGAAATAGCGCG+TGG | 0.704553 | 5.3:-35025904 | MS.gene035172:CDS |
TTAAATAATTCTGATCACAG+AGG | 0.726851 | 5.3:+35022879 | None:intergenic |
CGTGCAAAGAAGGATCCAAG+TGG | 0.732676 | 5.3:-35034780 | MS.gene035172:CDS |
GAAGATGATGAGATGCCTGG+TGG | 0.783796 | 5.3:-35021151 | MS.gene035172:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.3 | gene | 35021120 | 35040747 | 35021120 | ID=MS.gene035172 |
chr5.3 | mRNA | 35021120 | 35040747 | 35021120 | ID=MS.gene035172.t1;Parent=MS.gene035172 |
chr5.3 | exon | 35040645 | 35040747 | 35040645 | ID=MS.gene035172.t1.exon1;Parent=MS.gene035172.t1 |
chr5.3 | CDS | 35040645 | 35040747 | 35040645 | ID=cds.MS.gene035172.t1;Parent=MS.gene035172.t1 |
chr5.3 | exon | 35039523 | 35039607 | 35039523 | ID=MS.gene035172.t1.exon2;Parent=MS.gene035172.t1 |
chr5.3 | CDS | 35039523 | 35039607 | 35039523 | ID=cds.MS.gene035172.t1;Parent=MS.gene035172.t1 |
chr5.3 | exon | 35038772 | 35038841 | 35038772 | ID=MS.gene035172.t1.exon3;Parent=MS.gene035172.t1 |
chr5.3 | CDS | 35038772 | 35038841 | 35038772 | ID=cds.MS.gene035172.t1;Parent=MS.gene035172.t1 |
chr5.3 | exon | 35038579 | 35038674 | 35038579 | ID=MS.gene035172.t1.exon4;Parent=MS.gene035172.t1 |
chr5.3 | CDS | 35038579 | 35038674 | 35038579 | ID=cds.MS.gene035172.t1;Parent=MS.gene035172.t1 |
chr5.3 | exon | 35037442 | 35037857 | 35037442 | ID=MS.gene035172.t1.exon5;Parent=MS.gene035172.t1 |
chr5.3 | CDS | 35037442 | 35037857 | 35037442 | ID=cds.MS.gene035172.t1;Parent=MS.gene035172.t1 |
chr5.3 | exon | 35034761 | 35034890 | 35034761 | ID=MS.gene035172.t1.exon6;Parent=MS.gene035172.t1 |
chr5.3 | CDS | 35034761 | 35034890 | 35034761 | ID=cds.MS.gene035172.t1;Parent=MS.gene035172.t1 |
chr5.3 | exon | 35026908 | 35026950 | 35026908 | ID=MS.gene035172.t1.exon7;Parent=MS.gene035172.t1 |
chr5.3 | CDS | 35026908 | 35026950 | 35026908 | ID=cds.MS.gene035172.t1;Parent=MS.gene035172.t1 |
chr5.3 | exon | 35026115 | 35026180 | 35026115 | ID=MS.gene035172.t1.exon8;Parent=MS.gene035172.t1 |
chr5.3 | CDS | 35026115 | 35026180 | 35026115 | ID=cds.MS.gene035172.t1;Parent=MS.gene035172.t1 |
chr5.3 | exon | 35025879 | 35026036 | 35025879 | ID=MS.gene035172.t1.exon9;Parent=MS.gene035172.t1 |
chr5.3 | CDS | 35025879 | 35026036 | 35025879 | ID=cds.MS.gene035172.t1;Parent=MS.gene035172.t1 |
chr5.3 | exon | 35025463 | 35025627 | 35025463 | ID=MS.gene035172.t1.exon10;Parent=MS.gene035172.t1 |
chr5.3 | CDS | 35025463 | 35025627 | 35025463 | ID=cds.MS.gene035172.t1;Parent=MS.gene035172.t1 |
chr5.3 | exon | 35024286 | 35024474 | 35024286 | ID=MS.gene035172.t1.exon11;Parent=MS.gene035172.t1 |
chr5.3 | CDS | 35024286 | 35024474 | 35024286 | ID=cds.MS.gene035172.t1;Parent=MS.gene035172.t1 |
chr5.3 | exon | 35024129 | 35024197 | 35024129 | ID=MS.gene035172.t1.exon12;Parent=MS.gene035172.t1 |
chr5.3 | CDS | 35024129 | 35024197 | 35024129 | ID=cds.MS.gene035172.t1;Parent=MS.gene035172.t1 |
chr5.3 | exon | 35023827 | 35024009 | 35023827 | ID=MS.gene035172.t1.exon13;Parent=MS.gene035172.t1 |
chr5.3 | CDS | 35023827 | 35024009 | 35023827 | ID=cds.MS.gene035172.t1;Parent=MS.gene035172.t1 |
chr5.3 | exon | 35022863 | 35022906 | 35022863 | ID=MS.gene035172.t1.exon14;Parent=MS.gene035172.t1 |
chr5.3 | CDS | 35022863 | 35022906 | 35022863 | ID=cds.MS.gene035172.t1;Parent=MS.gene035172.t1 |
chr5.3 | exon | 35022746 | 35022817 | 35022746 | ID=MS.gene035172.t1.exon15;Parent=MS.gene035172.t1 |
chr5.3 | CDS | 35022746 | 35022817 | 35022746 | ID=cds.MS.gene035172.t1;Parent=MS.gene035172.t1 |
chr5.3 | exon | 35022429 | 35022614 | 35022429 | ID=MS.gene035172.t1.exon16;Parent=MS.gene035172.t1 |
chr5.3 | CDS | 35022429 | 35022614 | 35022429 | ID=cds.MS.gene035172.t1;Parent=MS.gene035172.t1 |
chr5.3 | exon | 35022215 | 35022306 | 35022215 | ID=MS.gene035172.t1.exon17;Parent=MS.gene035172.t1 |
chr5.3 | CDS | 35022215 | 35022306 | 35022215 | ID=cds.MS.gene035172.t1;Parent=MS.gene035172.t1 |
chr5.3 | exon | 35021120 | 35021433 | 35021120 | ID=MS.gene035172.t1.exon18;Parent=MS.gene035172.t1 |
chr5.3 | CDS | 35021120 | 35021433 | 35021120 | ID=cds.MS.gene035172.t1;Parent=MS.gene035172.t1 |
Gene Sequence |
Protein sequence |