Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene03518.t1 | XP_024022512.1 | 69.7 | 76 | 22 | 1 | 195 | 270 | 184 | 258 | 7.50E-23 | 117.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene03518.t1 | Q8S8M9 | 74.5 | 55 | 13 | 1 | 216 | 270 | 203 | 256 | 7.9e-21 | 102.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene03518.t1 | W9QL36 | 69.7 | 76 | 22 | 1 | 195 | 270 | 222 | 296 | 5.4e-23 | 117.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene03518.t1 | TF | Alfin-like |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene03518.t1 | MTR_8g019520 | 79.012 | 81 | 17 | 0 | 190 | 270 | 176 | 256 | 9.83e-32 | 118 |
MS.gene03518.t1 | MTR_8g019520 | 79.012 | 81 | 17 | 0 | 190 | 270 | 177 | 257 | 1.03e-31 | 118 |
MS.gene03518.t1 | MTR_2g099500 | 75.862 | 58 | 14 | 0 | 212 | 269 | 193 | 250 | 8.86e-27 | 105 |
MS.gene03518.t1 | MTR_1g015185 | 76.364 | 55 | 12 | 1 | 216 | 270 | 210 | 263 | 2.46e-24 | 98.6 |
MS.gene03518.t1 | MTR_2g040990 | 68.333 | 60 | 16 | 2 | 213 | 270 | 195 | 253 | 3.30e-22 | 92.8 |
MS.gene03518.t1 | MTR_4g134510 | 69.231 | 52 | 16 | 0 | 215 | 266 | 201 | 252 | 1.31e-21 | 91.3 |
MS.gene03518.t1 | MTR_4g015830 | 69.091 | 55 | 16 | 1 | 216 | 270 | 187 | 240 | 8.20e-21 | 89.0 |
MS.gene03518.t1 | MTR_7g068590 | 65.455 | 55 | 18 | 1 | 216 | 270 | 189 | 242 | 2.14e-19 | 85.1 |
MS.gene03518.t1 | MTR_0024s0330 | 52.273 | 88 | 38 | 2 | 1 | 88 | 96 | 179 | 7.55e-17 | 80.5 |
MS.gene03518.t1 | MTR_6g017265 | 51.250 | 80 | 35 | 2 | 2 | 81 | 106 | 181 | 7.27e-14 | 71.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene03518.t1 | AT5G20510 | 71.186 | 59 | 16 | 1 | 212 | 270 | 162 | 219 | 1.10e-24 | 98.6 |
MS.gene03518.t1 | AT5G20510 | 71.186 | 59 | 16 | 1 | 212 | 270 | 203 | 260 | 1.90e-24 | 99.0 |
MS.gene03518.t1 | AT3G42790 | 74.138 | 58 | 14 | 1 | 212 | 269 | 193 | 249 | 3.61e-24 | 98.2 |
MS.gene03518.t1 | AT2G02470 | 74.545 | 55 | 13 | 1 | 216 | 270 | 203 | 256 | 7.88e-24 | 97.4 |
MS.gene03518.t1 | AT2G02470 | 74.545 | 55 | 13 | 1 | 216 | 270 | 194 | 247 | 1.11e-23 | 96.7 |
MS.gene03518.t1 | AT5G26210 | 75.000 | 56 | 13 | 1 | 214 | 269 | 200 | 254 | 3.19e-23 | 95.5 |
MS.gene03518.t1 | AT1G14510 | 68.519 | 54 | 17 | 0 | 216 | 269 | 198 | 251 | 4.82e-22 | 92.4 |
MS.gene03518.t1 | AT5G05610 | 63.636 | 55 | 20 | 0 | 212 | 266 | 184 | 238 | 1.87e-19 | 85.1 |
MS.gene03518.t1 | AT5G05610 | 63.636 | 55 | 20 | 0 | 212 | 266 | 184 | 238 | 1.87e-19 | 85.1 |
MS.gene03518.t1 | AT3G11200 | 62.745 | 51 | 19 | 0 | 212 | 262 | 189 | 239 | 5.82e-18 | 81.3 |
MS.gene03518.t1 | AT3G11200 | 62.745 | 51 | 19 | 0 | 212 | 262 | 176 | 226 | 8.77e-18 | 80.5 |
MS.gene03518.t1 | AT5G38690 | 26.512 | 215 | 141 | 3 | 1 | 198 | 82 | 296 | 6.64e-12 | 65.9 |
MS.gene03518.t1 | AT5G38690 | 26.512 | 215 | 141 | 3 | 1 | 198 | 82 | 296 | 6.64e-12 | 65.9 |
Find 67 sgRNAs with CRISPR-Local
Find 91 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTCAACTCATACAATAAAT+TGG | 0.148698 | 6.2:-38048778 | MS.gene03518:CDS |
AAAGCATATTCTTCCTTTAT+AGG | 0.158707 | 6.2:+38049080 | None:intergenic |
TGGGATGGCACCATTGTTAT+TGG | 0.285100 | 6.2:-38048758 | MS.gene03518:CDS |
TCTTCCACATCCTCGTCTTT+AGG | 0.289074 | 6.2:+38048426 | None:intergenic |
TACTAATGTTGGGCCTATAA+AGG | 0.359306 | 6.2:-38049093 | MS.gene03518:CDS |
GTTATTGGTGATAATGATAT+TGG | 0.371338 | 6.2:-38048743 | MS.gene03518:CDS |
GAAGTTGATCTATCTCCATA+TGG | 0.371660 | 6.2:+38048708 | None:intergenic |
CAGAAAATCCAGAATTCATC+AGG | 0.388348 | 6.2:+38048336 | None:intergenic |
GGCAATGGGTACCGAGGATT+GGG | 0.397506 | 6.2:-38048837 | MS.gene03518:CDS |
TGCAAATGCCTCTACACTTC+GGG | 0.407999 | 6.2:+38049356 | None:intergenic |
TAATTGATAATAATGCTATA+AGG | 0.408256 | 6.2:-38048682 | MS.gene03518:CDS |
TATAAAGGAAGAATATGCTT+TGG | 0.417141 | 6.2:-38049078 | MS.gene03518:CDS |
TCCTCAATTAGTTCTCTCTC+TGG | 0.418949 | 6.2:+38048659 | None:intergenic |
TGGCAATGGGTACCGAGGAT+TGG | 0.420412 | 6.2:-38048838 | MS.gene03518:CDS |
ATAAAGGAAGAATATGCTTT+GGG | 0.425102 | 6.2:-38049077 | MS.gene03518:CDS |
ATGGGTAATAATACTAATGT+TGG | 0.425773 | 6.2:-38049104 | MS.gene03518:CDS |
GTTCGTATAGCCAAGGCATC+TGG | 0.430043 | 6.2:-38049185 | MS.gene03518:CDS |
TTCAACTCATACAATAAATT+GGG | 0.436614 | 6.2:-38048777 | MS.gene03518:CDS |
TCGATATGCTTAGCCCTAGC+AGG | 0.441225 | 6.2:+38048267 | None:intergenic |
CTAAAGCATCAGCCGCCTAC+AGG | 0.441391 | 6.2:-38049215 | MS.gene03518:CDS |
GGTGCATGCGGTGAGCAATA+TGG | 0.455947 | 6.2:-38048360 | MS.gene03518:CDS |
CTCTTGTTGTTATTGCATGA+TGG | 0.456815 | 6.2:+38048231 | None:intergenic |
AATATGGCCCTGATGAATTC+TGG | 0.457151 | 6.2:-38048344 | MS.gene03518:CDS |
CTCAGAAATGCTTAGCAAGA+TGG | 0.474202 | 6.2:-38049150 | MS.gene03518:CDS |
TGGGTAATAATACTAATGTT+GGG | 0.488773 | 6.2:-38049103 | MS.gene03518:CDS |
GAAGAAATTTCTCATCCCTC+TGG | 0.489177 | 6.2:-38048638 | MS.gene03518:CDS |
ACCAAACATTGAAAATGTAC+TGG | 0.490987 | 6.2:-38048615 | MS.gene03518:CDS |
ATGGGTACCGAGGATTGGGC+TGG | 0.494204 | 6.2:-38048833 | MS.gene03518:CDS |
GTGTGAATATCACCCCTGCT+AGG | 0.500091 | 6.2:-38048281 | MS.gene03518:CDS |
AAGTTGATCTATCTCCATAT+GGG | 0.500138 | 6.2:+38048709 | None:intergenic |
TGGTAGACTGAATTCCCATA+TGG | 0.509370 | 6.2:-38048723 | MS.gene03518:CDS |
TAAAGCATCAGCCGCCTACA+GGG | 0.517220 | 6.2:-38049214 | MS.gene03518:CDS |
CCCATTGCCACACAATGAGT+TGG | 0.522267 | 6.2:+38048851 | None:intergenic |
TTGCAAATGCCTCTACACTT+CGG | 0.528376 | 6.2:+38049355 | None:intergenic |
CCATTGCCACACAATGAGTT+GGG | 0.530914 | 6.2:+38048852 | None:intergenic |
CCCAACTCATTGTGTGGCAA+TGG | 0.536825 | 6.2:-38048852 | MS.gene03518:CDS |
GTTACCTAAAGACGAGGATG+TGG | 0.537974 | 6.2:-38048430 | MS.gene03518:CDS |
TCTGTGACATTTGTGAGAGG+TGG | 0.541786 | 6.2:-38048317 | MS.gene03518:CDS |
TTTGTGAGAGGTGGTTCCAT+GGG | 0.542875 | 6.2:-38048308 | MS.gene03518:CDS |
GCCAGAGAGAGAACTAATTG+AGG | 0.544336 | 6.2:-38048660 | MS.gene03518:CDS |
ACACGTAAAACCAGATGCCT+TGG | 0.548428 | 6.2:+38049175 | None:intergenic |
CCAACTCATTGTGTGGCAAT+GGG | 0.564276 | 6.2:-38048851 | MS.gene03518:CDS |
TGTGAATATCACCCCTGCTA+GGG | 0.567860 | 6.2:-38048280 | MS.gene03518:CDS |
AACATTTCCAGCCCAATCCT+CGG | 0.568680 | 6.2:+38048826 | None:intergenic |
CGATATGCTTAGCCCTAGCA+GGG | 0.574696 | 6.2:+38048268 | None:intergenic |
TGATATTCACACATTTCCCA+TGG | 0.578749 | 6.2:+38048292 | None:intergenic |
TGAGTTGAAGACAAAGGACT+AGG | 0.578822 | 6.2:+38048791 | None:intergenic |
ATTTGTGAGAGGTGGTTCCA+TGG | 0.579292 | 6.2:-38048309 | MS.gene03518:CDS |
GAGGAAGATGAAGATGAAGA+CGG | 0.585144 | 6.2:-38048396 | MS.gene03518:CDS |
ATTGTATGAGTTGAAGACAA+AGG | 0.596124 | 6.2:+38048785 | None:intergenic |
AACAAGAGAGCTCGCCCTTG+AGG | 0.603261 | 6.2:-38048216 | None:intergenic |
ATCATTATCACCAATAACAA+TGG | 0.607015 | 6.2:+38048748 | None:intergenic |
GGCACTTGTTCGTATAGCCA+AGG | 0.607034 | 6.2:-38049192 | MS.gene03518:CDS |
GGAAGAATATGCTTTGGGAA+AGG | 0.614050 | 6.2:-38049072 | MS.gene03518:intron |
ACTCATACAATAAATTGGGA+TGG | 0.616351 | 6.2:-38048773 | MS.gene03518:CDS |
TGGATGTGCCCGAAGTGTAG+AGG | 0.628364 | 6.2:-38049364 | MS.gene03518:CDS |
GGATGTGGAAGAACATTGTG+AGG | 0.641770 | 6.2:-38048415 | MS.gene03518:CDS |
AAAGCATCAGCCGCCTACAG+GGG | 0.652248 | 6.2:-38049213 | MS.gene03518:CDS |
CGAACAAGTGCCCCTGTAGG+CGG | 0.661590 | 6.2:+38049203 | None:intergenic |
TTGTGTGGCAATGGGTACCG+AGG | 0.665786 | 6.2:-38048843 | MS.gene03518:CDS |
ATATTGCCCAACTCATTGTG+TGG | 0.681307 | 6.2:-38048858 | MS.gene03518:CDS |
ATACGAACAAGTGCCCCTGT+AGG | 0.687555 | 6.2:+38049200 | None:intergenic |
AGAAAATCCAGAATTCATCA+GGG | 0.689840 | 6.2:+38048337 | None:intergenic |
GAAGACGGAGAGAACTCATG+TGG | 0.691398 | 6.2:-38048381 | MS.gene03518:CDS |
GAGAACTCATGTGGTGCATG+CGG | 0.697071 | 6.2:-38048372 | MS.gene03518:CDS |
TTTGGAGTTACCTAAAGACG+AGG | 0.697923 | 6.2:-38048436 | MS.gene03518:CDS |
GATATGCTTAGCCCTAGCAG+GGG | 0.762022 | 6.2:+38048269 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TAAAACATGTTTTATGATTT+TGG | - | chr6.2:38048275-38048294 | MS.gene03518:CDS | 15.0% |
!!! | TAATTGATAATAATGCTATA+AGG | - | chr6.2:38048897-38048916 | MS.gene03518:intron | 15.0% |
!!! | TTTTGAATTTTCTCTTAAAT+AGG | - | chr6.2:38049119-38049138 | MS.gene03518:CDS | 15.0% |
!! | TTCAACTCATACAATAAATT+GGG | - | chr6.2:38048802-38048821 | MS.gene03518:CDS | 20.0% |
!!! | TAGATTTTAACACATTGATT+GGG | - | chr6.2:38049032-38049051 | MS.gene03518:intron | 20.0% |
! | AAAGCATATTCTTCCTTTAT+AGG | + | chr6.2:38048502-38048521 | None:intergenic | 25.0% |
! | ATAAAGGAAGAATATGCTTT+GGG | - | chr6.2:38048502-38048521 | MS.gene03518:intron | 25.0% |
! | ATCATTATCACCAATAACAA+TGG | + | chr6.2:38048834-38048853 | None:intergenic | 25.0% |
! | ATGGGTAATAATACTAATGT+TGG | - | chr6.2:38048475-38048494 | MS.gene03518:intron | 25.0% |
! | CATATATCCAACAAGTATTA+AGG | + | chr6.2:38049081-38049100 | None:intergenic | 25.0% |
! | CTTCAACTCATACAATAAAT+TGG | - | chr6.2:38048801-38048820 | MS.gene03518:CDS | 25.0% |
! | GAAAAATTGGAACTTTCTAT+GGG | - | chr6.2:38048457-38048476 | MS.gene03518:intron | 25.0% |
! | TATAAAGGAAGAATATGCTT+TGG | - | chr6.2:38048501-38048520 | MS.gene03518:intron | 25.0% |
! | TGAAAAATTGGAACTTTCTA+TGG | - | chr6.2:38048456-38048475 | MS.gene03518:intron | 25.0% |
! | TGGGTAATAATACTAATGTT+GGG | - | chr6.2:38048476-38048495 | MS.gene03518:intron | 25.0% |
!! | ATTTTCTCTTAAATAGGCTT+TGG | - | chr6.2:38049125-38049144 | MS.gene03518:CDS | 25.0% |
!! | CTTAATACTTGTTGGATATA+TGG | - | chr6.2:38049079-38049098 | MS.gene03518:CDS | 25.0% |
!! | GTTATTGGTGATAATGATAT+TGG | - | chr6.2:38048836-38048855 | MS.gene03518:CDS | 25.0% |
!! | TCTTTATTTGATGCTGAATA+AGG | - | chr6.2:38048573-38048592 | MS.gene03518:CDS | 25.0% |
!!! | ATGTTTTATGATTTTGGTGT+TGG | - | chr6.2:38048281-38048300 | MS.gene03518:CDS | 25.0% |
!!! | CATATTTGTTATTATGCTAC+AGG | - | chr6.2:38048679-38048698 | MS.gene03518:CDS | 25.0% |
!!! | GTAGATTTTAACACATTGAT+TGG | - | chr6.2:38049031-38049050 | MS.gene03518:intron | 25.0% |
ACAAGTATTAAGGATGTCAT+CGG | + | chr6.2:38049071-38049090 | None:intergenic | 30.0% | |
ACCAAACATTGAAAATGTAC+TGG | - | chr6.2:38048964-38048983 | MS.gene03518:intron | 30.0% | |
ACTCATACAATAAATTGGGA+TGG | - | chr6.2:38048806-38048825 | MS.gene03518:CDS | 30.0% | |
AGAAAATCCAGAATTCATCA+GGG | + | chr6.2:38049245-38049264 | None:intergenic | 30.0% | |
ATGACATCCTTAATACTTGT+TGG | - | chr6.2:38049071-38049090 | MS.gene03518:intron | 30.0% | |
GTGACAGCTACATAAAAATA+GGG | + | chr6.2:38048544-38048563 | None:intergenic | 30.0% | |
TGTGACAGCTACATAAAAAT+AGG | + | chr6.2:38048545-38048564 | None:intergenic | 30.0% | |
TTAACGAAGATTAACGATGT+AGG | - | chr6.2:38048338-38048357 | MS.gene03518:CDS | 30.0% | |
! | AAGTTGATCTATCTCCATAT+GGG | + | chr6.2:38048873-38048892 | None:intergenic | 30.0% |
! | ATTGTATGAGTTGAAGACAA+AGG | + | chr6.2:38048797-38048816 | None:intergenic | 30.0% |
! | TCCAGTACATTTTCAATGTT+TGG | + | chr6.2:38048968-38048987 | None:intergenic | 30.0% |
!! | ATTTGTTATTATGCTACAGG+AGG | - | chr6.2:38048682-38048701 | MS.gene03518:CDS | 30.0% |
!! | TTTTAACACATTGATTGGGA+AGG | - | chr6.2:38049036-38049055 | MS.gene03518:intron | 30.0% |
CAAGATGGAAGCTGAAAAAT+TGG | - | chr6.2:38048444-38048463 | MS.gene03518:intron | 35.0% | |
CAGAAAATCCAGAATTCATC+AGG | + | chr6.2:38049246-38049265 | None:intergenic | 35.0% | |
TACTAATGTTGGGCCTATAA+AGG | - | chr6.2:38048486-38048505 | MS.gene03518:intron | 35.0% | |
TGATATTCACACATTTCCCA+TGG | + | chr6.2:38049290-38049309 | None:intergenic | 35.0% | |
! | ATTTTCAATGTTTGGTCCAG+AGG | + | chr6.2:38048960-38048979 | None:intergenic | 35.0% |
! | GAAGTTGATCTATCTCCATA+TGG | + | chr6.2:38048874-38048893 | None:intergenic | 35.0% |
! | TTTTCAATGTTTGGTCCAGA+GGG | + | chr6.2:38048959-38048978 | None:intergenic | 35.0% |
! | TTTTCTGTGACATTTGTGAG+AGG | - | chr6.2:38049259-38049278 | MS.gene03518:intron | 35.0% |
!! | CTCTTGTTGTTATTGCATGA+TGG | + | chr6.2:38049351-38049370 | None:intergenic | 35.0% |
AATATGGCCCTGATGAATTC+TGG | - | chr6.2:38049235-38049254 | MS.gene03518:intron | 40.0% | |
ATATTGCCCAACTCATTGTG+TGG | - | chr6.2:38048721-38048740 | MS.gene03518:CDS | 40.0% | |
CTCAGAAATGCTTAGCAAGA+TGG | - | chr6.2:38048429-38048448 | MS.gene03518:CDS | 40.0% | |
GAAGAAATTTCTCATCCCTC+TGG | - | chr6.2:38048941-38048960 | MS.gene03518:intron | 40.0% | |
GAGGAAGATGAAGATGAAGA+CGG | - | chr6.2:38049183-38049202 | MS.gene03518:CDS | 40.0% | |
TAGTGTGTGCATGTAAGTTG+TGG | - | chr6.2:38048250-38048269 | MS.gene03518:CDS | 40.0% | |
TGGTAGACTGAATTCCCATA+TGG | - | chr6.2:38048856-38048875 | MS.gene03518:CDS | 40.0% | |
TTGCAAATGCCTCTACACTT+CGG | + | chr6.2:38048227-38048246 | None:intergenic | 40.0% | |
! | TCCTCAATTAGTTCTCTCTC+TGG | + | chr6.2:38048923-38048942 | None:intergenic | 40.0% |
! | TGAGTTGAAGACAAAGGACT+AGG | + | chr6.2:38048791-38048810 | None:intergenic | 40.0% |
! | TTTGGAGTTACCTAAAGACG+AGG | - | chr6.2:38049143-38049162 | MS.gene03518:CDS | 40.0% |
!! | AGAATATGCTTTGGGAAAGG+TGG | - | chr6.2:38048510-38048529 | MS.gene03518:intron | 40.0% |
!! | GGAAGAATATGCTTTGGGAA+AGG | - | chr6.2:38048507-38048526 | MS.gene03518:intron | 40.0% |
AACATTTCCAGCCCAATCCT+CGG | + | chr6.2:38048756-38048775 | None:intergenic | 45.0% | |
ACACGTAAAACCAGATGCCT+TGG | + | chr6.2:38048407-38048426 | None:intergenic | 45.0% | |
ATTTGTGAGAGGTGGTTCCA+TGG | - | chr6.2:38049270-38049289 | MS.gene03518:intron | 45.0% | |
CCAACTCATTGTGTGGCAAT+GGG | - | chr6.2:38048728-38048747 | MS.gene03518:CDS | 45.0% | |
CCATTGCCACACAATGAGTT+GGG | + | chr6.2:38048730-38048749 | None:intergenic | 45.0% | |
GCCAGAGAGAGAACTAATTG+AGG | - | chr6.2:38048919-38048938 | MS.gene03518:intron | 45.0% | |
GGATGTGGAAGAACATTGTG+AGG | - | chr6.2:38049164-38049183 | MS.gene03518:CDS | 45.0% | |
GTTACCTAAAGACGAGGATG+TGG | - | chr6.2:38049149-38049168 | MS.gene03518:CDS | 45.0% | |
TCTGTGACATTTGTGAGAGG+TGG | - | chr6.2:38049262-38049281 | MS.gene03518:intron | 45.0% | |
TCTTCCACATCCTCGTCTTT+AGG | + | chr6.2:38049156-38049175 | None:intergenic | 45.0% | |
TGCAAATGCCTCTACACTTC+GGG | + | chr6.2:38048226-38048245 | None:intergenic | 45.0% | |
TGGGATGGCACCATTGTTAT+TGG | - | chr6.2:38048821-38048840 | MS.gene03518:CDS | 45.0% | |
TGTGAATATCACCCCTGCTA+GGG | - | chr6.2:38049299-38049318 | MS.gene03518:intron | 45.0% | |
TTTGTGAGAGGTGGTTCCAT+GGG | - | chr6.2:38049271-38049290 | MS.gene03518:intron | 45.0% | |
ATACGAACAAGTGCCCCTGT+AGG | + | chr6.2:38048382-38048401 | None:intergenic | 50.0% | |
CCCAACTCATTGTGTGGCAA+TGG | - | chr6.2:38048727-38048746 | MS.gene03518:CDS | 50.0% | |
CCCATTGCCACACAATGAGT+TGG | + | chr6.2:38048731-38048750 | None:intergenic | 50.0% | |
CGATATGCTTAGCCCTAGCA+GGG | + | chr6.2:38049314-38049333 | None:intergenic | 50.0% | |
GAAGACGGAGAGAACTCATG+TGG | - | chr6.2:38049198-38049217 | MS.gene03518:CDS | 50.0% | |
GAGAACTCATGTGGTGCATG+CGG | - | chr6.2:38049207-38049226 | MS.gene03518:CDS | 50.0% | |
GATATGCTTAGCCCTAGCAG+GGG | + | chr6.2:38049313-38049332 | None:intergenic | 50.0% | |
GGCACTTGTTCGTATAGCCA+AGG | - | chr6.2:38048387-38048406 | MS.gene03518:CDS | 50.0% | |
GTGTGAATATCACCCCTGCT+AGG | - | chr6.2:38049298-38049317 | MS.gene03518:intron | 50.0% | |
TCGATATGCTTAGCCCTAGC+AGG | + | chr6.2:38049315-38049334 | None:intergenic | 50.0% | |
! | GTTCGTATAGCCAAGGCATC+TGG | - | chr6.2:38048394-38048413 | MS.gene03518:CDS | 50.0% |
! | TAAAGCATCAGCCGCCTACA+GGG | - | chr6.2:38048365-38048384 | MS.gene03518:CDS | 50.0% |
GGTGCATGCGGTGAGCAATA+TGG | - | chr6.2:38049219-38049238 | MS.gene03518:CDS | 55.0% | |
! | AAAGCATCAGCCGCCTACAG+GGG | - | chr6.2:38048366-38048385 | MS.gene03518:CDS | 55.0% |
! | CTAAAGCATCAGCCGCCTAC+AGG | - | chr6.2:38048364-38048383 | MS.gene03518:CDS | 55.0% |
! | TTGTGTGGCAATGGGTACCG+AGG | - | chr6.2:38048736-38048755 | MS.gene03518:CDS | 55.0% |
!! | GGCAATGGGTACCGAGGATT+GGG | - | chr6.2:38048742-38048761 | MS.gene03518:CDS | 55.0% |
!! | TGGCAATGGGTACCGAGGAT+TGG | - | chr6.2:38048741-38048760 | MS.gene03518:CDS | 55.0% |
CGAACAAGTGCCCCTGTAGG+CGG | + | chr6.2:38048379-38048398 | None:intergenic | 60.0% | |
!! | ATGGGTACCGAGGATTGGGC+TGG | - | chr6.2:38048746-38048765 | MS.gene03518:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.2 | gene | 38048218 | 38049383 | 38048218 | ID=MS.gene03518 |
chr6.2 | mRNA | 38048218 | 38049383 | 38048218 | ID=MS.gene03518.t1;Parent=MS.gene03518 |
chr6.2 | exon | 38049340 | 38049383 | 38049340 | ID=MS.gene03518.t1.exon1;Parent=MS.gene03518.t1 |
chr6.2 | CDS | 38049340 | 38049383 | 38049340 | ID=cds.MS.gene03518.t1;Parent=MS.gene03518.t1 |
chr6.2 | exon | 38049073 | 38049241 | 38049073 | ID=MS.gene03518.t1.exon2;Parent=MS.gene03518.t1 |
chr6.2 | CDS | 38049073 | 38049241 | 38049073 | ID=cds.MS.gene03518.t1;Parent=MS.gene03518.t1 |
chr6.2 | exon | 38048544 | 38048900 | 38048544 | ID=MS.gene03518.t1.exon3;Parent=MS.gene03518.t1 |
chr6.2 | CDS | 38048544 | 38048900 | 38048544 | ID=cds.MS.gene03518.t1;Parent=MS.gene03518.t1 |
chr6.2 | exon | 38048218 | 38048460 | 38048218 | ID=MS.gene03518.t1.exon4;Parent=MS.gene03518.t1 |
chr6.2 | CDS | 38048218 | 38048460 | 38048218 | ID=cds.MS.gene03518.t1;Parent=MS.gene03518.t1 |
Gene Sequence |
Protein sequence |