AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene035247

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene035247.t1 MTR_4g117990 96.765 340 9 2 1 339 1 339 0.0 677
MS.gene035247.t1 MTR_7g081190 54.545 319 98 7 37 317 39 348 2.62e-84 260
MS.gene035247.t1 MTR_5g017500 42.636 129 60 2 16 142 6 122 7.04e-29 111
MS.gene035247.t1 MTR_3g014280 26.667 315 158 9 32 312 26 301 5.35e-19 86.7
MS.gene035247.t1 MTR_4g079960 34.328 134 79 5 15 143 2 131 4.36e-14 72.4
MS.gene035247.t1 MTR_4g079960 34.328 134 79 5 15 143 2 131 5.81e-14 72.0
MS.gene035247.t1 MTR_4g079960 35.897 117 69 3 29 143 19 131 9.93e-14 71.2
MS.gene035247.t1 MTR_1g061600 37.143 105 62 2 44 148 133 233 1.53e-13 71.6
MS.gene035247.t1 MTR_2g016140 29.907 107 71 3 32 135 9 114 2.07e-11 64.3
MS.gene035247.t1 MTR_2g016140 29.907 107 71 3 32 135 9 114 2.33e-11 64.3
MS.gene035247.t1 MTR_8g022290 34.066 91 55 1 18 103 37 127 4.00e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene035247.t1 AT2G44730 47.401 327 105 8 35 317 55 358 5.60e-83 256
MS.gene035247.t1 AT3G24860 30.450 289 140 8 37 309 58 301 1.67e-29 115
MS.gene035247.t1 AT4G17060 53.425 73 34 0 253 325 235 307 9.63e-19 85.9
MS.gene035247.t1 AT3G58630 33.333 117 69 1 43 150 25 141 2.94e-16 79.0
MS.gene035247.t1 AT3G58630 33.333 117 69 1 43 150 25 141 2.98e-16 78.6
MS.gene035247.t1 AT3G14180 33.103 145 81 4 2 135 33 172 4.83e-15 76.3
MS.gene035247.t1 AT3G10030 40.217 92 51 2 44 135 161 248 1.59e-13 71.6
MS.gene035247.t1 AT3G10030 40.217 92 51 2 44 135 161 248 1.85e-13 71.6
MS.gene035247.t1 AT3G54390 32.692 104 63 1 38 141 32 128 3.47e-11 63.5
MS.gene035247.t1 AT3G54390 32.692 104 63 1 38 141 48 144 3.80e-11 63.5

Find 110 sgRNAs with CRISPR-Local

Find 130 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAGGGAGAGCGAGAGGGAG+GGG 0.247071 8.1:+9436696 None:intergenic
TCTGATTCAGATTAGGATTA+GGG 0.281845 8.1:+9436076 None:intergenic
GTGGGTTCACTTTAAGCTTA+TGG 0.284555 8.1:-9436382 MS.gene035247:CDS
TTGGTGGAGGATTTAGGATT+AGG 0.294445 8.1:-9436149 MS.gene035247:CDS
GCAACGGCCACGAAGGGATT+GGG 0.306955 8.1:-9436033 MS.gene035247:CDS
GATGGAATTCTCTTATTGAT+AGG 0.313357 8.1:+9435772 None:intergenic
GGAGGAGTGGTGGTTGAAGG+AGG 0.317249 8.1:+9436747 None:intergenic
GGTGGGATAGGGAGTGGAGC+AGG 0.335913 8.1:+9436678 None:intergenic
GAGCAGGGAGAGCGAGAGGG+AGG 0.343320 8.1:+9436694 None:intergenic
CAGGGAGAGCGAGAGGGAGG+GGG 0.347743 8.1:+9436697 None:intergenic
AGGAGGGAGACGGCGGGTGG+AGG 0.351853 8.1:+9436656 None:intergenic
ATCGGAGAGAGGAGGAGGAG+TGG 0.352089 8.1:+9436734 None:intergenic
TGTTTCTTCCGGGGACCAAC+AGG 0.352389 8.1:+9436632 None:intergenic
GGGTGATGGGTTTGTGAGAA+TGG 0.354314 8.1:-9435956 MS.gene035247:CDS
TGAGAGCTAGTGTTTCTTCC+GGG 0.356493 8.1:+9436622 None:intergenic
TTCTGATTCAGATTAGGATT+AGG 0.360137 8.1:+9436075 None:intergenic
ATGAGAGCTAGTGTTTCTTC+CGG 0.362298 8.1:+9436621 None:intergenic
GTGGTGTTGGTGGAGGATTT+AGG 0.367259 8.1:-9436155 MS.gene035247:CDS
CGGCGGGTGGAGGGTGGGAT+AGG 0.369593 8.1:+9436666 None:intergenic
GGAGGAGGAGTGGTGGTTGA+AGG 0.374630 8.1:+9436744 None:intergenic
GGGAGGAGGGAGACGGCGGG+TGG 0.386644 8.1:+9436653 None:intergenic
AACCCACGCCGAATTGAATC+TGG 0.390473 8.1:+9436398 None:intergenic
GGGAGACGGCGGGTGGAGGG+TGG 0.391865 8.1:+9436660 None:intergenic
GGCAACGGCCACGAAGGGAT+TGG 0.405107 8.1:-9436034 MS.gene035247:CDS
TGGTAGTTCTGATTCAGATT+AGG 0.405176 8.1:+9436069 None:intergenic
AACGGTTTCGGTGGCGGAAT+CGG 0.412071 8.1:-9436204 MS.gene035247:CDS
CCCTTCGTGGCCGTTGCCAT+TGG 0.420642 8.1:+9436039 None:intergenic
TTCGTGGCCGTTGCCATTGG+TGG 0.421581 8.1:+9436042 None:intergenic
GTGGAGGGTGGGATAGGGAG+TGG 0.424548 8.1:+9436672 None:intergenic
ATCTTGTGACGGCATTGAAC+AGG 0.427497 8.1:+9436480 None:intergenic
CTTGTTCCCCAATCCCTTCG+TGG 0.427969 8.1:+9436026 None:intergenic
CCCTCCTCCCTGTTGGTCCC+CGG 0.429651 8.1:-9436640 MS.gene035247:CDS
TTCGGTGGCGGAATCGGTGG+TGG 0.431601 8.1:-9436198 MS.gene035247:CDS
CTTTAAGCTTATGGATTCCA+TGG 0.436353 8.1:-9436373 MS.gene035247:CDS
GGTAGTAGTGGTGTTGGTGG+AGG 0.441731 8.1:-9436162 MS.gene035247:CDS
TGTATCTGCGATTAAATTGT+TGG 0.442896 8.1:-9435977 MS.gene035247:CDS
TATAAGAACGGTTTCGGTGG+CGG 0.444102 8.1:-9436210 MS.gene035247:CDS
GAGGAGTGGTGGTTGAAGGA+GGG 0.444252 8.1:+9436748 None:intergenic
GGTGGTAGTAGTGGTGTTGG+TGG 0.445358 8.1:-9436165 MS.gene035247:CDS
CCGTTGCCATTGGTGGAGTA+TGG 0.446576 8.1:+9436049 None:intergenic
TCCTCATTCCAGATTCAATT+CGG 0.448751 8.1:-9436406 MS.gene035247:CDS
AAGTTGTATAAGAACGGTTT+CGG 0.449906 8.1:-9436216 MS.gene035247:CDS
GGAGGGAGACGGCGGGTGGA+GGG 0.450430 8.1:+9436657 None:intergenic
AGGAGTGGTGGTTGAAGGAG+GGG 0.455601 8.1:+9436749 None:intergenic
CGATTAAATTGTTGGGTGAT+GGG 0.458197 8.1:-9435969 MS.gene035247:CDS
GTGGGATAGGGAGTGGAGCA+GGG 0.462787 8.1:+9436679 None:intergenic
GTCACAAGATGGAGAAGCTT+CGG 0.475663 8.1:-9436467 MS.gene035247:CDS
GGAGACGGCGGGTGGAGGGT+GGG 0.478675 8.1:+9436661 None:intergenic
AGTGGAGCAGGGAGAGCGAG+AGG 0.479605 8.1:+9436690 None:intergenic
GTATCTGCGATTAAATTGTT+GGG 0.482195 8.1:-9435976 MS.gene035247:CDS
GGTGGTGGTAGTAGTGGTGT+TGG 0.485391 8.1:-9436168 MS.gene035247:CDS
CATTATGATTGTTGTGGTGA+TGG 0.489229 8.1:+9435754 None:intergenic
TCCGGGGACCAACAGGGAGG+AGG 0.490986 8.1:+9436639 None:intergenic
ATCAATAAGTTGTATAAGAA+CGG 0.492654 8.1:-9436222 MS.gene035247:CDS
GTTGAAGGAGGGGAAGACAT+TGG 0.494183 8.1:+9436759 None:intergenic
CGTGACAAATGGTACTCTCT+TGG 0.494378 8.1:-9436588 MS.gene035247:CDS
AGCAGGGAGAGCGAGAGGGA+GGG 0.499132 8.1:+9436695 None:intergenic
GAGAATGGAGCAAAAGAAGA+TGG 0.500362 8.1:-9435941 MS.gene035247:CDS
GGAGAGAGGAGGAGGAGTGG+TGG 0.506258 8.1:+9436737 None:intergenic
GCGATTAAATTGTTGGGTGA+TGG 0.506498 8.1:-9435970 MS.gene035247:CDS
GCAGATACAACCTCAGTCAA+TGG 0.509994 8.1:+9435991 None:intergenic
GGCGGGTGGAGGGTGGGATA+GGG 0.512182 8.1:+9436667 None:intergenic
GCCGTCTCCCTCCTCCCTGT+TGG 0.524735 8.1:-9436647 MS.gene035247:CDS
GTAATCTCAAAGCCACTCAC+TGG 0.525271 8.1:-9436560 MS.gene035247:CDS
ACAGGGAGGAGGGAGACGGC+GGG 0.528462 8.1:+9436650 None:intergenic
ACCAACAGGGAGGAGGGAGA+CGG 0.529436 8.1:+9436646 None:intergenic
GCTGTCATCGGAAACTGCCT+TGG 0.529999 8.1:+9435822 None:intergenic
GGTTTCGGTGGCGGAATCGG+TGG 0.531244 8.1:-9436201 MS.gene035247:CDS
AGCGACTTCTTGCCAGTGAG+TGG 0.532762 8.1:+9436548 None:intergenic
TCGACTCCTACCGTGACAAA+TGG 0.536305 8.1:-9436599 MS.gene035247:CDS
CCGGGGACCAACAGGGAGGA+GGG 0.537223 8.1:+9436640 None:intergenic
GTGGAGCAGGGAGAGCGAGA+GGG 0.538286 8.1:+9436691 None:intergenic
ACTGTTGTTATTGCTGTCAT+CGG 0.538503 8.1:+9435810 None:intergenic
TGAAACTATGAGGATGGAGA+TGG 0.538920 8.1:-9435902 MS.gene035247:CDS
CGAAGGGATTGGGGAACAAG+AGG 0.540694 8.1:-9436023 MS.gene035247:CDS
TTTGATTCAGGTTGTGCCGG+TGG 0.545116 8.1:+9436123 None:intergenic
TGTTCAATGCCGTCACAAGA+TGG 0.547819 8.1:-9436478 MS.gene035247:CDS
CGAGGGAGATTGAAACTATG+AGG 0.548584 8.1:-9435912 MS.gene035247:CDS
TTGTATAAGAACGGTTTCGG+TGG 0.552376 8.1:-9436213 MS.gene035247:CDS
CAACGGCCACGAAGGGATTG+GGG 0.553536 8.1:-9436032 MS.gene035247:CDS
CTTATGGATTCCATGGAGAA+AGG 0.553692 8.1:-9436366 MS.gene035247:CDS
TGAATCTCAACAGCGAATTG+TGG 0.554265 8.1:-9435854 MS.gene035247:CDS
TTTAGTGGTGGTGGTAGTAG+TGG 0.554628 8.1:-9436174 MS.gene035247:CDS
TTCCAGATTCAATTCGGCGT+GGG 0.557065 8.1:-9436400 MS.gene035247:CDS
AACAGGGAGGAGGGAGACGG+CGG 0.559675 8.1:+9436649 None:intergenic
ACCAATGGCAACGGCCACGA+AGG 0.566202 8.1:-9436040 MS.gene035247:CDS
AAAAGAAGATGGAGATGGCG+AGG 0.571525 8.1:-9435930 MS.gene035247:CDS
CCAATGGCAACGGCCACGAA+GGG 0.574376 8.1:-9436039 MS.gene035247:CDS
GAAGCTTCTCCATCTTGTGA+CGG 0.577882 8.1:+9436469 None:intergenic
ATTTAGGATTAGGTATCCAC+CGG 0.578430 8.1:-9436139 MS.gene035247:CDS
GGAGATTGAAACTATGAGGA+TGG 0.585982 8.1:-9435908 MS.gene035247:CDS
AAATGGTACTCTCTTGGCCG+CGG 0.594791 8.1:-9436582 MS.gene035247:CDS
GAAGGGATTGGGGAACAAGA+GGG 0.597432 8.1:-9436022 MS.gene035247:CDS
CCATACTCCACCAATGGCAA+CGG 0.603853 8.1:-9436049 MS.gene035247:CDS
GCCGAATTGAATCTGGAATG+AGG 0.606212 8.1:+9436405 None:intergenic
AGGAGAAGGACCTTTCTCCA+TGG 0.610673 8.1:+9436356 None:intergenic
GAGAGCTAGTGTTTCTTCCG+GGG 0.612128 8.1:+9436623 None:intergenic
AAAGAAGATGGAGATGGCGA+GGG 0.614159 8.1:-9435929 MS.gene035247:CDS
GTCGAACATTATGATTGTTG+TGG 0.614285 8.1:+9435748 None:intergenic
ATCTCAACAGCGAATTGTGG+AGG 0.620844 8.1:-9435851 MS.gene035247:CDS
GAACTACCATACTCCACCAA+TGG 0.622768 8.1:-9436055 MS.gene035247:CDS
AGAGTACCATTTGTCACGGT+AGG 0.626402 8.1:+9436593 None:intergenic
ATTCCAGATTCAATTCGGCG+TGG 0.627728 8.1:-9436401 MS.gene035247:CDS
GTTTCTTCCGGGGACCAACA+GGG 0.628267 8.1:+9436633 None:intergenic
AATTGTGGAGGCATTCGCCA+AGG 0.638281 8.1:-9435839 MS.gene035247:CDS
GGAGCAAAAGAAGATGGAGA+TGG 0.642155 8.1:-9435935 MS.gene035247:CDS
CAAGAGAGTACCATTTGTCA+CGG 0.645825 8.1:+9436589 None:intergenic
GGAGAGAGATCCATTGACTG+AGG 0.657971 8.1:-9436001 MS.gene035247:CDS
TCTTCCGGGGACCAACAGGG+AGG 0.699899 8.1:+9436636 None:intergenic
GAGTGGCTTTGAGATTACCG+CGG 0.712719 8.1:+9436565 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCAATAAGTTGTATAAGAA+CGG - chr8.1:9436290-9436309 MS.gene035247:CDS 20.0%
!! CTGTATTTAGATATCAAAAA+CGG - chr8.1:9436245-9436264 MS.gene035247:CDS 20.0%
!! TCATTGTTTTCAGATTTAAC+AGG + chr8.1:9436179-9436198 None:intergenic 25.0%
!!! TCAGAAGAAAATTTTGATTC+AGG + chr8.1:9436404-9436423 None:intergenic 25.0%
AAGTTGTATAAGAACGGTTT+CGG - chr8.1:9436296-9436315 MS.gene035247:CDS 30.0%
GATGGAATTCTCTTATTGAT+AGG + chr8.1:9436743-9436762 None:intergenic 30.0%
GTATCTGCGATTAAATTGTT+GGG - chr8.1:9436536-9436555 MS.gene035247:CDS 30.0%
TCTGATTCAGATTAGGATTA+GGG + chr8.1:9436439-9436458 None:intergenic 30.0%
TGTATCTGCGATTAAATTGT+TGG - chr8.1:9436535-9436554 MS.gene035247:CDS 30.0%
TTAGATATCAAAAACGGTCA+TGG - chr8.1:9436251-9436270 MS.gene035247:CDS 30.0%
TTCTGATTCAGATTAGGATT+AGG + chr8.1:9436440-9436459 None:intergenic 30.0%
! TTTTCAGATTTAACAGGAGA+AGG + chr8.1:9436173-9436192 None:intergenic 30.0%
CGATTAAATTGTTGGGTGAT+GGG - chr8.1:9436543-9436562 MS.gene035247:CDS 35.0%
CTTTAAGCTTATGGATTCCA+TGG - chr8.1:9436139-9436158 MS.gene035247:CDS 35.0%
TCCTCATTCCAGATTCAATT+CGG - chr8.1:9436106-9436125 MS.gene035247:CDS 35.0%
! ACTGTTGTTATTGCTGTCAT+CGG + chr8.1:9436705-9436724 None:intergenic 35.0%
! ATTTAGGATTAGGTATCCAC+CGG - chr8.1:9436373-9436392 MS.gene035247:CDS 35.0%
!! TGGTAGTTCTGATTCAGATT+AGG + chr8.1:9436446-9436465 None:intergenic 35.0%
!!! AATTTTGATTCAGGTTGTGC+CGG + chr8.1:9436395-9436414 None:intergenic 35.0%
ATGAGAGCTAGTGTTTCTTC+CGG + chr8.1:9435894-9435913 None:intergenic 40.0%
CTTATGGATTCCATGGAGAA+AGG - chr8.1:9436146-9436165 MS.gene035247:CDS 40.0%
GAGAATGGAGCAAAAGAAGA+TGG - chr8.1:9436571-9436590 MS.gene035247:CDS 40.0%
GCGATTAAATTGTTGGGTGA+TGG - chr8.1:9436542-9436561 MS.gene035247:CDS 40.0%
GGAGATTGAAACTATGAGGA+TGG - chr8.1:9436604-9436623 MS.gene035247:CDS 40.0%
GTGGGTTCACTTTAAGCTTA+TGG - chr8.1:9436130-9436149 MS.gene035247:CDS 40.0%
TGAAACTATGAGGATGGAGA+TGG - chr8.1:9436610-9436629 MS.gene035247:CDS 40.0%
TGAATCTCAACAGCGAATTG+TGG - chr8.1:9436658-9436677 MS.gene035247:CDS 40.0%
TTGTATAAGAACGGTTTCGG+TGG - chr8.1:9436299-9436318 MS.gene035247:CDS 40.0%
! CATTGAACAGGAGTTTTCGA+CGG + chr8.1:9436023-9436042 None:intergenic 40.0%
! TTGGTGGAGGATTTAGGATT+AGG - chr8.1:9436363-9436382 MS.gene035247:CDS 40.0%
! TTTTCGACGGAGTAACGTTA+GGG + chr8.1:9436010-9436029 None:intergenic 40.0%
!! CAAGAGAGTACCATTTGTCA+CGG + chr8.1:9435926-9435945 None:intergenic 40.0%
AAAAGAAGATGGAGATGGCG+AGG - chr8.1:9436582-9436601 MS.gene035247:CDS 45.0%
AAAGAAGATGGAGATGGCGA+GGG - chr8.1:9436583-9436602 MS.gene035247:CDS 45.0%
ATCTCAACAGCGAATTGTGG+AGG - chr8.1:9436661-9436680 MS.gene035247:CDS 45.0%
ATTCCAGATTCAATTCGGCG+TGG - chr8.1:9436111-9436130 MS.gene035247:CDS 45.0%
CGAGGGAGATTGAAACTATG+AGG - chr8.1:9436600-9436619 MS.gene035247:CDS 45.0%
CGTGACAAATGGTACTCTCT+TGG - chr8.1:9435924-9435943 MS.gene035247:CDS 45.0%
GAACTACCATACTCCACCAA+TGG - chr8.1:9436457-9436476 MS.gene035247:CDS 45.0%
GAAGCTTCTCCATCTTGTGA+CGG + chr8.1:9436046-9436065 None:intergenic 45.0%
GCAGATACAACCTCAGTCAA+TGG + chr8.1:9436524-9436543 None:intergenic 45.0%
GGAGCAAAAGAAGATGGAGA+TGG - chr8.1:9436577-9436596 MS.gene035247:CDS 45.0%
GTAATCTCAAAGCCACTCAC+TGG - chr8.1:9435952-9435971 MS.gene035247:CDS 45.0%
GTCACAAGATGGAGAAGCTT+CGG - chr8.1:9436045-9436064 MS.gene035247:CDS 45.0%
TATAAGAACGGTTTCGGTGG+CGG - chr8.1:9436302-9436321 MS.gene035247:CDS 45.0%
TGAGAGCTAGTGTTTCTTCC+GGG + chr8.1:9435893-9435912 None:intergenic 45.0%
TGTTCAATGCCGTCACAAGA+TGG - chr8.1:9436034-9436053 MS.gene035247:CDS 45.0%
TTCCAGATTCAATTCGGCGT+GGG - chr8.1:9436112-9436131 MS.gene035247:CDS 45.0%
! AGAGTACCATTTGTCACGGT+AGG + chr8.1:9435922-9435941 None:intergenic 45.0%
! ATCTTGTGACGGCATTGAAC+AGG + chr8.1:9436035-9436054 None:intergenic 45.0%
! GCCGAATTGAATCTGGAATG+AGG + chr8.1:9436110-9436129 None:intergenic 45.0%
! GTTTTCGACGGAGTAACGTT+AGG + chr8.1:9436011-9436030 None:intergenic 45.0%
!! TTTAGTGGTGGTGGTAGTAG+TGG - chr8.1:9436338-9436357 MS.gene035247:CDS 45.0%
AAATGGTACTCTCTTGGCCG+CGG - chr8.1:9435930-9435949 MS.gene035247:CDS 50.0%
AACCCACGCCGAATTGAATC+TGG + chr8.1:9436117-9436136 None:intergenic 50.0%
AGGAGAAGGACCTTTCTCCA+TGG + chr8.1:9436159-9436178 None:intergenic 50.0%
CCATACTCCACCAATGGCAA+CGG - chr8.1:9436463-9436482 MS.gene035247:CDS 50.0%
GAAGGGATTGGGGAACAAGA+GGG - chr8.1:9436490-9436509 MS.gene035247:CDS 50.0%
GAGAGCTAGTGTTTCTTCCG+GGG + chr8.1:9435892-9435911 None:intergenic 50.0%
TCGACTCCTACCGTGACAAA+TGG - chr8.1:9435913-9435932 MS.gene035247:CDS 50.0%
! GGAGAGAGATCCATTGACTG+AGG - chr8.1:9436511-9436530 MS.gene035247:CDS 50.0%
!! AATTGTGGAGGCATTCGCCA+AGG - chr8.1:9436673-9436692 MS.gene035247:CDS 50.0%
!! GAGTGGCTTTGAGATTACCG+CGG + chr8.1:9435950-9435969 None:intergenic 50.0%
!! GGGTGATGGGTTTGTGAGAA+TGG - chr8.1:9436556-9436575 MS.gene035247:CDS 50.0%
!! GTGGTGTTGGTGGAGGATTT+AGG - chr8.1:9436357-9436376 MS.gene035247:CDS 50.0%
!! TTTGATTCAGGTTGTGCCGG+TGG + chr8.1:9436392-9436411 None:intergenic 50.0%
!!! ATCGGTGGTGGTTTTAGTGG+TGG - chr8.1:9436326-9436345 MS.gene035247:CDS 50.0%
!!! GGAATCGGTGGTGGTTTTAG+TGG - chr8.1:9436323-9436342 MS.gene035247:CDS 50.0%
AGCGACTTCTTGCCAGTGAG+TGG + chr8.1:9435967-9435986 None:intergenic 55.0%
AGGAGTGGTGGTTGAAGGAG+GGG + chr8.1:9435766-9435785 None:intergenic 55.0%
CCGTTGCCATTGGTGGAGTA+TGG + chr8.1:9436466-9436485 None:intergenic 55.0%
CGAAGGGATTGGGGAACAAG+AGG - chr8.1:9436489-9436508 MS.gene035247:CDS 55.0%
CTTGTTCCCCAATCCCTTCG+TGG + chr8.1:9436489-9436508 None:intergenic 55.0%
GAGGAGTGGTGGTTGAAGGA+GGG + chr8.1:9435767-9435786 None:intergenic 55.0%
GCTGTCATCGGAAACTGCCT+TGG + chr8.1:9436693-9436712 None:intergenic 55.0%
GTTTCTTCCGGGGACCAACA+GGG + chr8.1:9435882-9435901 None:intergenic 55.0%
TGTTTCTTCCGGGGACCAAC+AGG + chr8.1:9435883-9435902 None:intergenic 55.0%
! GGTGGTAGTAGTGGTGTTGG+TGG - chr8.1:9436347-9436366 MS.gene035247:CDS 55.0%
! GGTGGTGGTAGTAGTGGTGT+TGG - chr8.1:9436344-9436363 MS.gene035247:CDS 55.0%
!! AACGGTTTCGGTGGCGGAAT+CGG - chr8.1:9436308-9436327 MS.gene035247:CDS 55.0%
!! GGTAGTAGTGGTGTTGGTGG+AGG - chr8.1:9436350-9436369 MS.gene035247:CDS 55.0%
!!! GGTGGTGGTTTTAGTGGTGG+TGG - chr8.1:9436329-9436348 MS.gene035247:CDS 55.0%
ACCAACAGGGAGGAGGGAGA+CGG + chr8.1:9435869-9435888 None:intergenic 60.0%
ACCAATGGCAACGGCCACGA+AGG - chr8.1:9436472-9436491 MS.gene035247:CDS 60.0%
ATCGGAGAGAGGAGGAGGAG+TGG + chr8.1:9435781-9435800 None:intergenic 60.0%
CAACGGCCACGAAGGGATTG+GGG - chr8.1:9436480-9436499 MS.gene035247:CDS 60.0%
CCAATGGCAACGGCCACGAA+GGG - chr8.1:9436473-9436492 MS.gene035247:CDS 60.0%
GCAACGGCCACGAAGGGATT+GGG - chr8.1:9436479-9436498 MS.gene035247:CDS 60.0%
GGAGGAGGAGTGGTGGTTGA+AGG + chr8.1:9435771-9435790 None:intergenic 60.0%
GGAGGAGTGGTGGTTGAAGG+AGG + chr8.1:9435768-9435787 None:intergenic 60.0%
GTGGGATAGGGAGTGGAGCA+GGG + chr8.1:9435836-9435855 None:intergenic 60.0%
TTCGTGGCCGTTGCCATTGG+TGG + chr8.1:9436473-9436492 None:intergenic 60.0%
AACAGGGAGGAGGGAGACGG+CGG + chr8.1:9435866-9435885 None:intergenic 65.0%
AGCAGGGAGAGCGAGAGGGA+GGG + chr8.1:9435820-9435839 None:intergenic 65.0%
AGTGGAGCAGGGAGAGCGAG+AGG + chr8.1:9435825-9435844 None:intergenic 65.0%
CCCTTCGTGGCCGTTGCCAT+TGG + chr8.1:9436476-9436495 None:intergenic 65.0%
GGAGAGAGGAGGAGGAGTGG+TGG + chr8.1:9435778-9435797 None:intergenic 65.0%
GGCAACGGCCACGAAGGGAT+TGG - chr8.1:9436478-9436497 MS.gene035247:CDS 65.0%
GGTGGGATAGGGAGTGGAGC+AGG + chr8.1:9435837-9435856 None:intergenic 65.0%
GTGGAGCAGGGAGAGCGAGA+GGG + chr8.1:9435824-9435843 None:intergenic 65.0%
GTGGAGGGTGGGATAGGGAG+TGG + chr8.1:9435843-9435862 None:intergenic 65.0%
TCTTCCGGGGACCAACAGGG+AGG + chr8.1:9435879-9435898 None:intergenic 65.0%
!! GGTTTCGGTGGCGGAATCGG+TGG - chr8.1:9436311-9436330 MS.gene035247:CDS 65.0%
!! TTCGGTGGCGGAATCGGTGG+TGG - chr8.1:9436314-9436333 MS.gene035247:CDS 65.0%
ACAGGGAGGAGGGAGACGGC+GGG + chr8.1:9435865-9435884 None:intergenic 70.0%
CAGGGAGAGCGAGAGGGAGG+GGG + chr8.1:9435818-9435837 None:intergenic 70.0%
CCCTCCTCCCTGTTGGTCCC+CGG - chr8.1:9435872-9435891 MS.gene035247:CDS 70.0%
CCGGGGACCAACAGGGAGGA+GGG + chr8.1:9435875-9435894 None:intergenic 70.0%
GAGAGCGAGAGGGAGGGGGA+CGG + chr8.1:9435814-9435833 None:intergenic 70.0%
GAGCAGGGAGAGCGAGAGGG+AGG + chr8.1:9435821-9435840 None:intergenic 70.0%
GCAGGGAGAGCGAGAGGGAG+GGG + chr8.1:9435819-9435838 None:intergenic 70.0%
GCCGTCTCCCTCCTCCCTGT+TGG - chr8.1:9435865-9435884 MS.gene035247:CDS 70.0%
GGCGGGTGGAGGGTGGGATA+GGG + chr8.1:9435848-9435867 None:intergenic 70.0%
GGGGGATCGGAGAGAGGAGG+AGG + chr8.1:9435786-9435805 None:intergenic 70.0%
GTGGGGGGATCGGAGAGAGG+AGG + chr8.1:9435789-9435808 None:intergenic 70.0%
TCCGGGGACCAACAGGGAGG+AGG + chr8.1:9435876-9435895 None:intergenic 70.0%
AGAGGGAGGGGGACGGCGGT+GGG + chr8.1:9435807-9435826 None:intergenic 75.0%
AGCGAGAGGGAGGGGGACGG+CGG + chr8.1:9435811-9435830 None:intergenic 75.0%
AGGAGGGAGACGGCGGGTGG+AGG + chr8.1:9435859-9435878 None:intergenic 75.0%
CGGCGGGTGGAGGGTGGGAT+AGG + chr8.1:9435849-9435868 None:intergenic 75.0%
GCGGTGGGGGGATCGGAGAG+AGG + chr8.1:9435792-9435811 None:intergenic 75.0%
GGAGACGGCGGGTGGAGGGT+GGG + chr8.1:9435854-9435873 None:intergenic 75.0%
GGAGGGAGACGGCGGGTGGA+GGG + chr8.1:9435858-9435877 None:intergenic 75.0%
! AGGGAGGGGGACGGCGGTGG+GGG + chr8.1:9435805-9435824 None:intergenic 80.0%
! GAGAGGGAGGGGGACGGCGG+TGG + chr8.1:9435808-9435827 None:intergenic 80.0%
! GAGGGAGGGGGACGGCGGTG+GGG + chr8.1:9435806-9435825 None:intergenic 80.0%
! GGGAGACGGCGGGTGGAGGG+TGG + chr8.1:9435855-9435874 None:intergenic 80.0%
! GGGAGGAGGGAGACGGCGGG+TGG + chr8.1:9435862-9435881 None:intergenic 80.0%
! GGGGACGGCGGTGGGGGGAT+CGG + chr8.1:9435799-9435818 None:intergenic 80.0%
! GGGAGGGGGACGGCGGTGGG+GGG + chr8.1:9435804-9435823 None:intergenic 85.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 9435756 9436778 9435756 ID=MS.gene035247
chr8.1 mRNA 9435756 9436778 9435756 ID=MS.gene035247.t1;Parent=MS.gene035247
chr8.1 exon 9435756 9436778 9435756 ID=MS.gene035247.t1.exon1;Parent=MS.gene035247.t1
chr8.1 CDS 9435756 9436778 9435756 ID=cds.MS.gene035247.t1;Parent=MS.gene035247.t1
Gene Sequence

>MS.gene035247

ATGTCTTCCCCTCCTTCAACCACCACTCCTCCTCCTCTCTCCGATCCCCCCACCGCCGTCCCCCTCCCTCTCGCTCTCCCTGCTCCACTCCCTATCCCACCCTCCACCCGCCGTCTCCCTCCTCCCTGTTGGTCCCCGGAAGAAACACTAGCTCTCATCGACTCCTACCGTGACAAATGGTACTCTCTTGGCCGCGGTAATCTCAAAGCCACTCACTGGCAAGAAGTCGCTGACGCTGTTTCAAATCGTTGCCCTAACGTTACTCCGTCGAAAACTCCTGTTCAATGCCGTCACAAGATGGAGAAGCTTCGGAAACGTTATCGTACTGAGATTCAACGTGCTCGCTCGCTTCCTCATTCCAGATTCAATTCGGCGTGGGTTCACTTTAAGCTTATGGATTCCATGGAGAAAGGTCCTTCTCCTGTTAAATCTGAAAACAATGATTCTGATAGTGCTGATGATGATGAAGATGAAGATCATGATCAAAATCTGTATTTAGATATCAAAAACGGTCATGGATCTAATACTAGAAGTATCAATAAGTTGTATAAGAACGGTTTCGGTGGCGGAATCGGTGGTGGTTTTAGTGGTGGTGGTAGTAGTGGTGTTGGTGGAGGATTTAGGATTAGGTATCCACCGGCACAACCTGAATCAAAATTTTCTTCTGATCAGAAATATAACCCTAATCCTAATCTGAATCAGAACTACCATACTCCACCAATGGCAACGGCCACGAAGGGATTGGGGAACAAGAGGGAGAGAGATCCATTGACTGAGGTTGTATCTGCGATTAAATTGTTGGGTGATGGGTTTGTGAGAATGGAGCAAAAGAAGATGGAGATGGCGAGGGAGATTGAAACTATGAGGATGGAGATGGAAATGAAACGTACTGAGATGATTCTTGAATCTCAACAGCGAATTGTGGAGGCATTCGCCAAGGCAGTTTCCGATGACAGCAATAACAACAGTAACAAGATGATGAAGCCTATCAATAAGAGAATTCCATCACCACAACAATCATAA
Protein sequence

>MS.gene035247.t1

MSSPPSTTTPPPLSDPPTAVPLPLALPAPLPIPPSTRRLPPPCWSPEETLALIDSYRDKWYSLGRGNLKATHWQEVADAVSNRCPNVTPSKTPVQCRHKMEKLRKRYRTEIQRARSLPHSRFNSAWVHFKLMDSMEKGPSPVKSENNDSDSADDDEDEDHDQNLYLDIKNGHGSNTRSINKLYKNGFGGGIGGGFSGGGSSGVGGGFRIRYPPAQPESKFSSDQKYNPNPNLNQNYHTPPMATATKGLGNKRERDPLTEVVSAIKLLGDGFVRMEQKKMEMAREIETMRMEMEMKRTEMILESQQRIVEAFAKAVSDDSNNNSNKMMKPINKRIPSPQQS