Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035305.t1 | XP_003609635.2 | 96.1 | 1109 | 38 | 1 | 1 | 1104 | 1 | 1109 | 0.00E+00 | 2035 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035305.t1 | Q6A332 | 44.2 | 1089 | 527 | 19 | 48 | 1104 | 39 | 1078 | 1.0e-207 | 725.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035305.t1 | G7JKB2 | 96.1 | 1109 | 38 | 1 | 1 | 1104 | 1 | 1109 | 0.0e+00 | 2035.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene035305.t1 | TF | MYB-related |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035305.t1 | MTR_4g119390 | 96.123 | 1109 | 38 | 1 | 1 | 1104 | 1 | 1109 | 0.0 | 2207 |
| MS.gene035305.t1 | MTR_4g119390 | 93.182 | 1144 | 38 | 2 | 1 | 1104 | 1 | 1144 | 0.0 | 2189 |
| MS.gene035305.t1 | MTR_1g083040 | 42.234 | 1146 | 542 | 36 | 1 | 1104 | 1 | 1068 | 0.0 | 708 |
| MS.gene035305.t1 | MTR_1g083040 | 41.977 | 1153 | 548 | 34 | 1 | 1104 | 1 | 1081 | 0.0 | 708 |
| MS.gene035305.t1 | MTR_1g083040 | 41.457 | 1153 | 543 | 35 | 1 | 1104 | 1 | 1070 | 0.0 | 689 |
| MS.gene035305.t1 | MTR_1g083040 | 41.710 | 1146 | 537 | 37 | 1 | 1104 | 1 | 1057 | 0.0 | 687 |
| MS.gene035305.t1 | MTR_1g083040 | 45.756 | 813 | 370 | 22 | 1 | 784 | 1 | 771 | 0.0 | 588 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035305.t1 | AT3G21430 | 44.625 | 1107 | 532 | 22 | 28 | 1104 | 19 | 1074 | 0.0 | 813 |
| MS.gene035305.t1 | AT3G21430 | 44.464 | 1111 | 532 | 22 | 28 | 1104 | 19 | 1078 | 0.0 | 813 |
| MS.gene035305.t1 | AT3G21430 | 44.625 | 1107 | 532 | 22 | 28 | 1104 | 19 | 1074 | 0.0 | 813 |
| MS.gene035305.t1 | AT3G05380 | 37.846 | 975 | 472 | 28 | 1 | 909 | 1 | 907 | 5.96e-158 | 497 |
| MS.gene035305.t1 | AT3G05380 | 37.846 | 975 | 472 | 28 | 1 | 909 | 1 | 907 | 5.96e-158 | 497 |
| MS.gene035305.t1 | AT3G05380 | 37.846 | 975 | 472 | 28 | 1 | 909 | 1 | 907 | 5.96e-158 | 497 |
| MS.gene035305.t1 | AT3G05380 | 37.744 | 975 | 472 | 28 | 1 | 909 | 1 | 906 | 6.33e-158 | 497 |
| MS.gene035305.t1 | AT3G05380 | 36.682 | 886 | 439 | 25 | 89 | 909 | 1 | 829 | 1.22e-131 | 425 |
| MS.gene035305.t1 | AT5G27610 | 40.878 | 433 | 212 | 11 | 386 | 784 | 288 | 710 | 5.18e-71 | 256 |
| MS.gene035305.t1 | AT5G27610 | 47.893 | 261 | 99 | 9 | 1 | 257 | 1 | 228 | 1.01e-53 | 204 |
Find 234 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAGTGTCAGGGTTTGTTTC+TGG | 0.086747 | 8.4:+12385514 | None:intergenic |
| CCGAGTTATCTCCGTATTTC+TGG | 0.088103 | 8.4:+12378662 | None:intergenic |
| TTTCACCATATTTAGGTTTC+TGG | 0.112732 | 8.4:+12382011 | None:intergenic |
| TGCAAAATCTGTGTCAAAAT+TGG | 0.152697 | 8.4:+12386863 | None:intergenic |
| TATGAAGCTTACCGTGAATA+TGG | 0.199391 | 8.4:-12392968 | MS.gene035305:CDS |
| CACCTTGCCAAAATGTTTAA+TGG | 0.203085 | 8.4:+12377272 | None:intergenic |
| CTAGGGATTTCACCATATTT+AGG | 0.204552 | 8.4:+12382004 | None:intergenic |
| TAGCAGCCCATTAAACATTT+TGG | 0.215940 | 8.4:-12377279 | MS.gene035305:CDS |
| TTGCCAATAGAATATGAAAT+AGG | 0.224344 | 8.4:+12387448 | None:intergenic |
| ACACGCTGCCCAACAATTAA+TGG | 0.227330 | 8.4:+12380651 | None:intergenic |
| TCATGAATCTCCCTTGTCTT+TGG | 0.253815 | 8.4:+12380615 | None:intergenic |
| CAAGCATTTGAATGACTTAA+AGG | 0.264328 | 8.4:-12386934 | MS.gene035305:CDS |
| TGGTACACAGCGACCTTTAA+TGG | 0.271033 | 8.4:+12379701 | None:intergenic |
| AAACCTTGATGAGTCTAAAA+TGG | 0.290911 | 8.4:-12383945 | MS.gene035305:CDS |
| CTGGTATGCTCCCTCTGCTT+TGG | 0.301751 | 8.4:+12383856 | None:intergenic |
| GGCCTCATGCTGTTCGAAAA+AGG | 0.303491 | 8.4:-12387483 | MS.gene035305:CDS |
| GTGATATCATACCAGGAATT+AGG | 0.306104 | 8.4:-12387504 | MS.gene035305:intron |
| GGCCATAGATTCTATTACTT+TGG | 0.309553 | 8.4:-12377324 | MS.gene035305:CDS |
| GTCCCTATTTCATATTCTAT+TGG | 0.311459 | 8.4:-12387451 | MS.gene035305:CDS |
| TCTACTGCTTTGTTGTCATT+TGG | 0.311783 | 8.4:+12389773 | None:intergenic |
| AGCTACACTGCTCATGATTC+AGG | 0.314415 | 8.4:-12377168 | MS.gene035305:intron |
| GGTGATAATGCAGATTATTC+TGG | 0.316155 | 8.4:-12387062 | MS.gene035305:CDS |
| AGCCAAAGTAATAGAATCTA+TGG | 0.320570 | 8.4:+12377322 | None:intergenic |
| GACAGACCATTATAGTATTA+TGG | 0.321669 | 8.4:-12390797 | MS.gene035305:intron |
| TGGTATGCTCCCTCTGCTTT+GGG | 0.323032 | 8.4:+12383857 | None:intergenic |
| CAGTTTGACCAGCATGAACT+TGG | 0.326153 | 8.4:-12380552 | MS.gene035305:CDS |
| GAAGCCCATTGCAAATTTAG+AGG | 0.326174 | 8.4:-12378385 | MS.gene035305:CDS |
| ATCAAAAGAAGCTGATATAT+TGG | 0.334194 | 8.4:-12378901 | MS.gene035305:CDS |
| GGAAGGCATACCTGCTGATT+TGG | 0.335570 | 8.4:-12380679 | MS.gene035305:CDS |
| TCTTGTTGTATCATTGGTTT+TGG | 0.337366 | 8.4:+12381853 | None:intergenic |
| GAGGGCACTGCTTCTGTGGT+TGG | 0.350015 | 8.4:-12390835 | MS.gene035305:CDS |
| TTGCTCTTGCAGTACGTAAT+AGG | 0.355212 | 8.4:-12392680 | MS.gene035305:CDS |
| GGTAGTTCTGAGTTGAGTTT+AGG | 0.359133 | 8.4:-12387095 | MS.gene035305:CDS |
| AGCTTGAACAACCATGGTTC+GGG | 0.363741 | 8.4:+12378257 | None:intergenic |
| CCACTCAATACGAGTCAATC+TGG | 0.366185 | 8.4:+12381516 | None:intergenic |
| TCATTCCAGAAACCTAAATA+TGG | 0.366857 | 8.4:-12382016 | MS.gene035305:CDS |
| GAGAAGTCAGATGCCATTAA+AGG | 0.366873 | 8.4:-12379714 | MS.gene035305:CDS |
| GACTTTGAGATATAGATTCT+TGG | 0.367314 | 8.4:+12378316 | None:intergenic |
| TTCTTACCATAATACTATAA+TGG | 0.367930 | 8.4:+12390791 | None:intergenic |
| TGCTATGCAGAAGAGAAAAT+TGG | 0.368184 | 8.4:-12393038 | MS.gene035305:intron |
| AGTTGTATCAACCATTTGTT+TGG | 0.371204 | 8.4:+12387384 | None:intergenic |
| TCATTCTAGCAGGAGTAATA+TGG | 0.372331 | 8.4:+12379802 | None:intergenic |
| AGGGCACTGCTTCTGTGGTT+GGG | 0.372492 | 8.4:-12390834 | MS.gene035305:CDS |
| GTGAAGAAGTCCACGGTTAA+AGG | 0.375088 | 8.4:-12382063 | MS.gene035305:CDS |
| TTGTTGAAGAAAAGGCATTC+TGG | 0.378476 | 8.4:-12389689 | MS.gene035305:intron |
| ACCTTGCCAAAATGTTTAAT+GGG | 0.382506 | 8.4:+12377273 | None:intergenic |
| AGAAAATTGGCCGATATGTT+AGG | 0.389878 | 8.4:-12393025 | MS.gene035305:CDS |
| TGCCAATAGAATATGAAATA+GGG | 0.392930 | 8.4:+12387449 | None:intergenic |
| CGGAAACAGTTCAAGAAAAC+CGG | 0.393769 | 8.4:-12383912 | MS.gene035305:CDS |
| GTATGATCTTGTTGTATCAT+TGG | 0.395885 | 8.4:+12381847 | None:intergenic |
| AGCCTTCTGCCTATTCTTGC+CGG | 0.398604 | 8.4:+12393347 | None:intergenic |
| TCCAATCTTTCCCATATTCA+CGG | 0.405262 | 8.4:+12392957 | None:intergenic |
| TGTGTCAAAATTGGATTTGA+AGG | 0.405494 | 8.4:+12386872 | None:intergenic |
| CATTATGCTGAAGTTCTTGC+TGG | 0.413232 | 8.4:-12380708 | MS.gene035305:CDS |
| GCCTGTCATTGTTGAAGAAA+AGG | 0.415958 | 8.4:-12389697 | MS.gene035305:CDS |
| CATGTTAAATCAGGAATAGT+TGG | 0.422787 | 8.4:-12387149 | MS.gene035305:CDS |
| CTCTGTTTATTTGACCGACT+TGG | 0.423203 | 8.4:+12381902 | None:intergenic |
| GAGATAATATTGGAAGAGTA+AGG | 0.427648 | 8.4:-12387016 | MS.gene035305:CDS |
| AATGACAACAAAGCAGTAGA+TGG | 0.428914 | 8.4:-12389770 | MS.gene035305:CDS |
| CAGCAAATACCGGCAAGAAT+AGG | 0.429426 | 8.4:-12393356 | MS.gene035305:CDS |
| CTACTCTTATGCAGTTCTCT+TGG | 0.430013 | 8.4:-12380810 | MS.gene035305:intron |
| AAGCCTTGTACACTAAGAAC+AGG | 0.430030 | 8.4:-12392641 | MS.gene035305:CDS |
| CGGAACAGTAGAGATAATAT+TGG | 0.430192 | 8.4:-12387026 | MS.gene035305:CDS |
| ATAAATGCCTTACCAGTGTC+AGG | 0.432931 | 8.4:+12385502 | None:intergenic |
| TGGCCCAGCCATTAATTGTT+GGG | 0.439743 | 8.4:-12380659 | MS.gene035305:CDS |
| CTTCTAGGAACTTGTGTTGT+CGG | 0.445079 | 8.4:-12378719 | MS.gene035305:intron |
| TAGCTTGAACAACCATGGTT+CGG | 0.445922 | 8.4:+12378256 | None:intergenic |
| ATAAATCCATCGCATCATAC+TGG | 0.446266 | 8.4:-12381792 | MS.gene035305:CDS |
| AATCTAGAAGTGTAAATAAG+AGG | 0.448249 | 8.4:-12393422 | MS.gene035305:CDS |
| AAATCACAAGCAAAAGTTGC+GGG | 0.448716 | 8.4:-12378987 | MS.gene035305:CDS |
| TTTAGAGGATCCCGGTGGTC+AGG | 0.449914 | 8.4:-12378370 | MS.gene035305:CDS |
| CATACTGGTTCTCATTTAAG+TGG | 0.450622 | 8.4:-12383652 | MS.gene035305:CDS |
| TTGGCCCAGCCATTAATTGT+TGG | 0.451045 | 8.4:-12380660 | MS.gene035305:CDS |
| TATTTGAAGACATATTTCCT+AGG | 0.454212 | 8.4:+12381986 | None:intergenic |
| GCCTCCAGTGGAACCGATGA+TGG | 0.455246 | 8.4:-12386909 | MS.gene035305:CDS |
| AACATAAACTTAATCAGTAC+CGG | 0.455370 | 8.4:-12380746 | MS.gene035305:CDS |
| GAATAGTACGGAACGTCATA+AGG | 0.457036 | 8.4:-12381767 | MS.gene035305:intron |
| TACCCTGTTCTTAGTGTACA+AGG | 0.457694 | 8.4:+12392638 | None:intergenic |
| ATTAACTGAAGCAAATGAAC+AGG | 0.462633 | 8.4:-12378590 | MS.gene035305:intron |
| GAACTGAAGCACATGAATGA+TGG | 0.462918 | 8.4:-12378697 | MS.gene035305:CDS |
| AAGAGTAAGGAATCAGGAAA+AGG | 0.465011 | 8.4:-12387003 | MS.gene035305:CDS |
| TATTGGAAGAGTAAGGAATC+AGG | 0.465078 | 8.4:-12387009 | MS.gene035305:CDS |
| AGGTTCTCATTCATTCTAGC+AGG | 0.466630 | 8.4:+12379792 | None:intergenic |
| AATGTGATCTGACAGATTCC+CGG | 0.468252 | 8.4:+12380727 | None:intergenic |
| AAGTGTGAGGTCTTCTTACA+AGG | 0.469533 | 8.4:-12386832 | MS.gene035305:CDS |
| CTGTTGACCATTGTAGATAC+CGG | 0.470249 | 8.4:-12380578 | MS.gene035305:CDS |
| TATCGTTGACAAAGCAGAAA+GGG | 0.470257 | 8.4:-12381965 | MS.gene035305:CDS |
| ATGAAGCTTACCGTGAATAT+GGG | 0.470402 | 8.4:-12392967 | MS.gene035305:CDS |
| ACCGTGAATATGGGAAAGAT+TGG | 0.471794 | 8.4:-12392958 | MS.gene035305:CDS |
| ATCTATGGCCAGAAAATTTG+TGG | 0.473141 | 8.4:+12377337 | None:intergenic |
| AGAGTAAGGAATCAGGAAAA+GGG | 0.476289 | 8.4:-12387002 | MS.gene035305:CDS |
| CATTCCGTTGCATCAGATGA+TGG | 0.476385 | 8.4:-12389722 | MS.gene035305:CDS |
| AATTGGATTTGAAGGAACTC+TGG | 0.478314 | 8.4:+12386880 | None:intergenic |
| TCCAGAGGGCACTGCTTCTG+TGG | 0.478808 | 8.4:-12390839 | MS.gene035305:CDS |
| ACCACAGAAGCAGTGCCCTC+TGG | 0.479339 | 8.4:+12390838 | None:intergenic |
| ACGTAATAGGACCATGGAAA+TGG | 0.480725 | 8.4:-12392667 | MS.gene035305:CDS |
| CCATTGTGGTCCTAACATAT+CGG | 0.481285 | 8.4:+12393015 | None:intergenic |
| GTTGTGGCAAGCTGAGCAAT+TGG | 0.482009 | 8.4:+12378338 | None:intergenic |
| TTTCCATCTTTCTTCTAGGT+CGG | 0.482426 | 8.4:+12381878 | None:intergenic |
| TTGAGTGGGGAGTCATTAGA+AGG | 0.484128 | 8.4:-12381501 | MS.gene035305:intron |
| ATTCTGGAAAATTAATTCAT+CGG | 0.486527 | 8.4:-12387046 | MS.gene035305:CDS |
| CAATGAGATATGAGTTCTGA+GGG | 0.491306 | 8.4:+12377194 | None:intergenic |
| TTCTATTGGCAAAGATAATG+AGG | 0.491767 | 8.4:-12387437 | MS.gene035305:CDS |
| TCCTGCTTACAGCACTAAGC+TGG | 0.492772 | 8.4:+12383837 | None:intergenic |
| CGCAAATCTGACATGGATGA+AGG | 0.495520 | 8.4:-12387116 | MS.gene035305:CDS |
| ATCAGCAGGTATGCCTTCCT+TGG | 0.495822 | 8.4:+12380683 | None:intergenic |
| GGATCCTCTAAATTTGCAAT+GGG | 0.496083 | 8.4:+12378381 | None:intergenic |
| CCATCACCCAATCTGAAAAG+TGG | 0.497047 | 8.4:-12387268 | MS.gene035305:CDS |
| ATGGCATCTGACTTCTCACT+TGG | 0.499265 | 8.4:+12379720 | None:intergenic |
| AATTGCTCTGAAAATCTTCG+TGG | 0.500777 | 8.4:+12380783 | None:intergenic |
| GAATGAATGAGAACCTCAAT+GGG | 0.504301 | 8.4:-12379785 | MS.gene035305:CDS |
| AGTTTGACCAGCATGAACTT+GGG | 0.504601 | 8.4:-12380551 | MS.gene035305:CDS |
| AACTGAAGCACATGAATGAT+GGG | 0.505603 | 8.4:-12378696 | MS.gene035305:CDS |
| GACTCGTGCTCTAGAAAAGA+AGG | 0.506028 | 8.4:-12378865 | MS.gene035305:intron |
| GTTAGGACCACAATGGAGTA+AGG | 0.506745 | 8.4:-12393008 | MS.gene035305:CDS |
| CTAAATATGGTGAAATCCCT+AGG | 0.507305 | 8.4:-12382003 | MS.gene035305:CDS |
| GATAAAGATGCAGCAAATAC+CGG | 0.508252 | 8.4:-12393366 | MS.gene035305:CDS |
| GCTGCCCAACAATTAATGGC+TGG | 0.508774 | 8.4:+12380655 | None:intergenic |
| AAGTGGTTCCCAGAAAATCA+AGG | 0.509560 | 8.4:-12383635 | MS.gene035305:intron |
| AATGGCTGGGCCAAATCAGC+AGG | 0.510693 | 8.4:+12380669 | None:intergenic |
| TTTGTGTTAGTTTCCCATTG+AGG | 0.511138 | 8.4:+12379772 | None:intergenic |
| AGAATGAATGAGAACCTCAA+TGG | 0.511473 | 8.4:-12379786 | MS.gene035305:CDS |
| GAGATATAGATTCTTGGTTG+TGG | 0.512907 | 8.4:+12378322 | None:intergenic |
| GCGGGCAGTGAGATTTGTAA+TGG | 0.514341 | 8.4:-12378969 | MS.gene035305:CDS |
| TTAAGTTCATCATCTTGTAC+AGG | 0.517590 | 8.4:+12377248 | None:intergenic |
| AATGAGAACTTGATGCTGAT+TGG | 0.518355 | 8.4:+12378946 | None:intergenic |
| TTTCAGAAAGACAGAAAGCA+AGG | 0.519639 | 8.4:-12377429 | MS.gene035305:CDS |
| CTGCCCAACAATTAATGGCT+GGG | 0.521000 | 8.4:+12380656 | None:intergenic |
| TCCATCATCGGTTCCACTGG+AGG | 0.521031 | 8.4:+12386908 | None:intergenic |
| TCTAAAATGGAAACAGATAA+CGG | 0.522858 | 8.4:-12383932 | MS.gene035305:CDS |
| ACCAGCTTAGTGCTGTAAGC+AGG | 0.523976 | 8.4:-12383838 | MS.gene035305:CDS |
| CAATCTGAAAAGTGGGAAGA+AGG | 0.524576 | 8.4:-12387260 | MS.gene035305:intron |
| CAGAATGATGAAACACATAC+TGG | 0.524927 | 8.4:-12383667 | MS.gene035305:CDS |
| GGCGATGGTGCACCTCTGAA+TGG | 0.528930 | 8.4:-12381621 | MS.gene035305:CDS |
| ATACTTAGAACATGTTGGAC+TGG | 0.530255 | 8.4:-12381548 | MS.gene035305:CDS |
| AGGCCGACCTAGAAGAAAGA+TGG | 0.530402 | 8.4:-12381881 | MS.gene035305:CDS |
| TGGGGACAATATTGTGTGCT+CGG | 0.531755 | 8.4:+12379740 | None:intergenic |
| TGATTGGAGTCGCTCAAGAA+AGG | 0.533822 | 8.4:+12378920 | None:intergenic |
| GTACTGCTTACATGCATAGC+AGG | 0.536620 | 8.4:+12379678 | None:intergenic |
| CAGATTGACTCGTATTGAGT+GGG | 0.537564 | 8.4:-12381515 | MS.gene035305:CDS |
| CAGTTCAAGAAAACCGGGCA+AGG | 0.539629 | 8.4:-12383906 | MS.gene035305:CDS |
| ATAGTGCTATTGATTATCCA+TGG | 0.540206 | 8.4:-12381594 | MS.gene035305:CDS |
| ATTTGAAGACATATTTCCTA+GGG | 0.540728 | 8.4:+12381987 | None:intergenic |
| TTGAGTTTAGGAAGTACAGA+AGG | 0.542444 | 8.4:-12387083 | MS.gene035305:CDS |
| GTTTGACCAGCATGAACTTG+GGG | 0.546671 | 8.4:-12380550 | MS.gene035305:CDS |
| CTTCACATCAAACGCGGCGA+TGG | 0.547360 | 8.4:-12381636 | MS.gene035305:CDS |
| CACTCAATACGAGTCAATCT+GGG | 0.548436 | 8.4:+12381517 | None:intergenic |
| CATGGTTGTTCAAGCTACTC+AGG | 0.549504 | 8.4:-12378250 | MS.gene035305:intron |
| GTATCAGAAAGCCAGAAATA+CGG | 0.550244 | 8.4:-12378673 | MS.gene035305:CDS |
| TAGGCAGGACTCCAAACAAA+TGG | 0.551437 | 8.4:-12387395 | MS.gene035305:CDS |
| AGAATATGAAATAGGGACAC+GGG | 0.551820 | 8.4:+12387456 | None:intergenic |
| GTTCTTGCTGGTACCAAGGA+AGG | 0.552113 | 8.4:-12380696 | MS.gene035305:CDS |
| CAAGGCTTCTACCATTTCCA+TGG | 0.555139 | 8.4:+12392656 | None:intergenic |
| GGGATCCTCTAAATTTGCAA+TGG | 0.556861 | 8.4:+12378380 | None:intergenic |
| CCAGAAATACGGAGATAACT+CGG | 0.563831 | 8.4:-12378662 | MS.gene035305:CDS |
| GGAAGAGCTAGCCTGACCAC+CGG | 0.565756 | 8.4:+12378359 | None:intergenic |
| AACTCTCTCTTTGAAAACCA+TGG | 0.566023 | 8.4:+12381577 | None:intergenic |
| GTAGAATACTTAGAACATGT+TGG | 0.571317 | 8.4:-12381553 | MS.gene035305:CDS |
| GACTTAAAGGAGGCCTCCAG+TGG | 0.577399 | 8.4:-12386921 | MS.gene035305:CDS |
| TGACCGCTTGCCTTTAACCG+TGG | 0.577890 | 8.4:+12382053 | None:intergenic |
| TCATTTGTGCAGTTCAGTGA+AGG | 0.577897 | 8.4:-12383968 | MS.gene035305:CDS |
| AAATTCACCTTCTGAATACC+AGG | 0.578589 | 8.4:+12393321 | None:intergenic |
| CATCACCCAATCTGAAAAGT+GGG | 0.578815 | 8.4:-12387267 | MS.gene035305:CDS |
| ATTGCAAATTTAGAGGATCC+CGG | 0.580743 | 8.4:-12378378 | MS.gene035305:CDS |
| TAGAGTCATCGACTGAAAGC+CGG | 0.581077 | 8.4:+12377369 | None:intergenic |
| CATGCTGGTCAAACTGAACC+CGG | 0.582887 | 8.4:+12380559 | None:intergenic |
| TGGCATCTGACTTCTCACTT+GGG | 0.583323 | 8.4:+12379721 | None:intergenic |
| CCAGATTGACTCGTATTGAG+TGG | 0.583650 | 8.4:-12381516 | MS.gene035305:CDS |
| AAGACAAGGGAGATTCATGA+TGG | 0.583960 | 8.4:-12380612 | MS.gene035305:CDS |
| TGAAGTTCTTGCTGGTACCA+AGG | 0.587865 | 8.4:-12380700 | MS.gene035305:CDS |
| ACAATGAGATATGAGTTCTG+AGG | 0.588292 | 8.4:+12377193 | None:intergenic |
| TACTTAGAACATGTTGGACT+GGG | 0.589292 | 8.4:-12381547 | MS.gene035305:CDS |
| TTGTCATTTGGCTTTCCCCG+TGG | 0.590049 | 8.4:+12389785 | None:intergenic |
| GGCATACTTGTCTCTTCCAG+AGG | 0.594396 | 8.4:-12390854 | MS.gene035305:CDS |
| GAAGAGCTAGCCTGACCACC+GGG | 0.595145 | 8.4:+12378360 | None:intergenic |
| AATAGGCAGAAGGCTAGTCC+TGG | 0.595746 | 8.4:-12393339 | MS.gene035305:CDS |
| ATATCGTTGACAAAGCAGAA+AGG | 0.598224 | 8.4:-12381966 | MS.gene035305:CDS |
| ATTCCTCCAGTATGATGCGA+TGG | 0.600268 | 8.4:+12381786 | None:intergenic |
| ATGGTGTCTTATCAGAGACA+TGG | 0.600547 | 8.4:+12379821 | None:intergenic |
| TGTTGACCATTGTAGATACC+GGG | 0.601453 | 8.4:-12380577 | MS.gene035305:CDS |
| GGCTAGTCCTGGTATTCAGA+AGG | 0.601808 | 8.4:-12393328 | MS.gene035305:intron |
| AAGCAAGGTTGAAAGAGTTG+AGG | 0.603856 | 8.4:-12377414 | MS.gene035305:CDS |
| TCATCTGATGCAACGGAATG+TGG | 0.605010 | 8.4:+12389725 | None:intergenic |
| GCAACCATCATCTGATGCAA+CGG | 0.606972 | 8.4:+12389718 | None:intergenic |
| ATCATACTGGAGGAATAGTA+CGG | 0.608135 | 8.4:-12381779 | MS.gene035305:CDS |
| TTGCTATTCATCCAAAGACA+AGG | 0.608201 | 8.4:-12380626 | MS.gene035305:CDS |
| TGCTATTCATCCAAAGACAA+GGG | 0.608809 | 8.4:-12380625 | MS.gene035305:CDS |
| ATTCAACCCCAAGTTCATGC+TGG | 0.612807 | 8.4:+12380544 | None:intergenic |
| CCAGAAACAAACCCTGACAC+TGG | 0.613482 | 8.4:-12385514 | MS.gene035305:intron |
| AATTGCATTAGCATTATCAG+AGG | 0.618027 | 8.4:-12387347 | MS.gene035305:CDS |
| TAGAATATGAAATAGGGACA+CGG | 0.618389 | 8.4:+12387455 | None:intergenic |
| GGCATCTGACTTCTCACTTG+GGG | 0.618633 | 8.4:+12379722 | None:intergenic |
| CAAATCACAAGCAAAAGTTG+CGG | 0.619381 | 8.4:-12378988 | MS.gene035305:CDS |
| TCTATTGGCAAAGATAATGA+GGG | 0.622126 | 8.4:-12387436 | MS.gene035305:CDS |
| TGGTGTCTTATCAGAGACAT+GGG | 0.624605 | 8.4:+12379822 | None:intergenic |
| TACCGGCAAGAATAGGCAGA+AGG | 0.627607 | 8.4:-12393349 | MS.gene035305:CDS |
| ACTTGGGGTTGAATTTGTCA+TGG | 0.632591 | 8.4:-12380535 | MS.gene035305:intron |
| TAAATGCCTTACCAGTGTCA+GGG | 0.634335 | 8.4:+12385503 | None:intergenic |
| ATATGGGAAAGATTGGAAGA+AGG | 0.634909 | 8.4:-12392951 | MS.gene035305:intron |
| AGATACTGCTCCCAAAGCAG+AGG | 0.637946 | 8.4:-12383867 | MS.gene035305:CDS |
| GATACTGCTCCCAAAGCAGA+GGG | 0.640638 | 8.4:-12383866 | MS.gene035305:CDS |
| TACATCGTAGGTTACTGATG+AGG | 0.643727 | 8.4:-12382085 | MS.gene035305:intron |
| GGAAACAGTTCAAGAAAACC+GGG | 0.644607 | 8.4:-12383911 | MS.gene035305:CDS |
| ATCGTTGACAAAGCAGAAAG+GGG | 0.645016 | 8.4:-12381964 | MS.gene035305:CDS |
| TCAGAGGCTTCACAGAGAGG+TGG | 0.645463 | 8.4:-12387331 | MS.gene035305:CDS |
| CTGAGTAGCTTGAACAACCA+TGG | 0.645469 | 8.4:+12378251 | None:intergenic |
| TAGAAGAAAAGCCCGAACCA+TGG | 0.646018 | 8.4:-12378268 | MS.gene035305:CDS |
| AATCCATCGCATCATACTGG+AGG | 0.648435 | 8.4:-12381789 | MS.gene035305:CDS |
| ACATAAACTTAATCAGTACC+GGG | 0.650723 | 8.4:-12380745 | MS.gene035305:CDS |
| ACTGAACCCGGTATCTACAA+TGG | 0.651577 | 8.4:+12380571 | None:intergenic |
| TGCAGTACGTAATAGGACCA+TGG | 0.653882 | 8.4:-12392673 | MS.gene035305:CDS |
| AGTGTGAGGTCTTCTTACAA+GGG | 0.653978 | 8.4:-12386831 | MS.gene035305:CDS |
| GCATTTGAATGACTTAAAGG+AGG | 0.659228 | 8.4:-12386931 | MS.gene035305:CDS |
| TGGCAGGGAGGAAGTGACAG+TGG | 0.659370 | 8.4:-12389857 | MS.gene035305:intron |
| GAAGTTTCGCAAATCTGACA+TGG | 0.660309 | 8.4:-12387123 | MS.gene035305:CDS |
| GAGGTTCTCTAATATTCGTG+AGG | 0.661488 | 8.4:-12393403 | MS.gene035305:CDS |
| AGTCCACGGTTAAAGGCAAG+CGG | 0.668120 | 8.4:-12382056 | MS.gene035305:CDS |
| GCATACTTGTCTCTTCCAGA+GGG | 0.673500 | 8.4:-12390853 | MS.gene035305:CDS |
| AGCACTATAAAACCATTCAG+AGG | 0.676314 | 8.4:+12381609 | None:intergenic |
| TTATCAGAGGCTTCACAGAG+AGG | 0.676499 | 8.4:-12387334 | MS.gene035305:CDS |
| AGCCTTGTACACTAAGAACA+GGG | 0.682265 | 8.4:-12392640 | MS.gene035305:intron |
| CCGATATGTTAGGACCACAA+TGG | 0.682677 | 8.4:-12393015 | MS.gene035305:CDS |
| AGCTCCGCCTTACTCCATTG+TGG | 0.688593 | 8.4:+12393001 | None:intergenic |
| CTGCTTACATGCATAGCAGG+TGG | 0.693143 | 8.4:+12379681 | None:intergenic |
| TGATGAGGTGAAGAAGTCCA+CGG | 0.695386 | 8.4:-12382070 | MS.gene035305:CDS |
| GTCTGTCTTCACATCAAACG+CGG | 0.697708 | 8.4:-12381642 | MS.gene035305:CDS |
| AGATTGACTCGTATTGAGTG+GGG | 0.698291 | 8.4:-12381514 | MS.gene035305:CDS |
| AGGACCACAATGGAGTAAGG+CGG | 0.703268 | 8.4:-12393005 | MS.gene035305:CDS |
| ACTGAAGCACATGAATGATG+GGG | 0.703661 | 8.4:-12378695 | MS.gene035305:CDS |
| GGGCTTCAATGACAAAACTG+AGG | 0.705815 | 8.4:+12378401 | None:intergenic |
| GAATATGAAATAGGGACACG+GGG | 0.712256 | 8.4:+12387457 | None:intergenic |
| CAAGTCGGTCAAATAAACAG+AGG | 0.727061 | 8.4:-12381901 | MS.gene035305:CDS |
| AATGAGATATGAGTTCTGAG+GGG | 0.770793 | 8.4:+12377195 | None:intergenic |
| GCAAATTTAGAGGATCCCGG+TGG | 0.773825 | 8.4:-12378375 | MS.gene035305:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 12376123 | 12393460 | 12376123 | ID=MS.gene035305 |
| chr8.4 | mRNA | 12376123 | 12393460 | 12376123 | ID=MS.gene035305.t1;Parent=MS.gene035305 |
| chr8.4 | exon | 12393329 | 12393460 | 12393329 | ID=MS.gene035305.t1.exon1;Parent=MS.gene035305.t1 |
| chr8.4 | CDS | 12393329 | 12393460 | 12393329 | ID=cds.MS.gene035305.t1;Parent=MS.gene035305.t1 |
| chr8.4 | exon | 12392952 | 12393050 | 12392952 | ID=MS.gene035305.t1.exon2;Parent=MS.gene035305.t1 |
| chr8.4 | CDS | 12392952 | 12393050 | 12392952 | ID=cds.MS.gene035305.t1;Parent=MS.gene035305.t1 |
| chr8.4 | exon | 12392641 | 12392703 | 12392641 | ID=MS.gene035305.t1.exon3;Parent=MS.gene035305.t1 |
| chr8.4 | CDS | 12392641 | 12392703 | 12392641 | ID=cds.MS.gene035305.t1;Parent=MS.gene035305.t1 |
| chr8.4 | exon | 12390798 | 12390875 | 12390798 | ID=MS.gene035305.t1.exon4;Parent=MS.gene035305.t1 |
| chr8.4 | CDS | 12390798 | 12390875 | 12390798 | ID=cds.MS.gene035305.t1;Parent=MS.gene035305.t1 |
| chr8.4 | exon | 12389690 | 12389873 | 12389690 | ID=MS.gene035305.t1.exon5;Parent=MS.gene035305.t1 |
| chr8.4 | CDS | 12389690 | 12389873 | 12389690 | ID=cds.MS.gene035305.t1;Parent=MS.gene035305.t1 |
| chr8.4 | exon | 12387261 | 12387511 | 12387261 | ID=MS.gene035305.t1.exon6;Parent=MS.gene035305.t1 |
| chr8.4 | CDS | 12387261 | 12387511 | 12387261 | ID=cds.MS.gene035305.t1;Parent=MS.gene035305.t1 |
| chr8.4 | exon | 12386793 | 12387171 | 12386793 | ID=MS.gene035305.t1.exon7;Parent=MS.gene035305.t1 |
| chr8.4 | CDS | 12386793 | 12387171 | 12386793 | ID=cds.MS.gene035305.t1;Parent=MS.gene035305.t1 |
| chr8.4 | exon | 12385515 | 12385592 | 12385515 | ID=MS.gene035305.t1.exon8;Parent=MS.gene035305.t1 |
| chr8.4 | CDS | 12385515 | 12385592 | 12385515 | ID=cds.MS.gene035305.t1;Parent=MS.gene035305.t1 |
| chr8.4 | exon | 12383808 | 12383992 | 12383808 | ID=MS.gene035305.t1.exon9;Parent=MS.gene035305.t1 |
| chr8.4 | CDS | 12383808 | 12383992 | 12383808 | ID=cds.MS.gene035305.t1;Parent=MS.gene035305.t1 |
| chr8.4 | exon | 12383636 | 12383686 | 12383636 | ID=MS.gene035305.t1.exon10;Parent=MS.gene035305.t1 |
| chr8.4 | CDS | 12383636 | 12383686 | 12383636 | ID=cds.MS.gene035305.t1;Parent=MS.gene035305.t1 |
| chr8.4 | exon | 12381768 | 12382097 | 12381768 | ID=MS.gene035305.t1.exon11;Parent=MS.gene035305.t1 |
| chr8.4 | CDS | 12381768 | 12382097 | 12381768 | ID=cds.MS.gene035305.t1;Parent=MS.gene035305.t1 |
| chr8.4 | exon | 12381502 | 12381680 | 12381502 | ID=MS.gene035305.t1.exon12;Parent=MS.gene035305.t1 |
| chr8.4 | CDS | 12381502 | 12381680 | 12381502 | ID=cds.MS.gene035305.t1;Parent=MS.gene035305.t1 |
| chr8.4 | exon | 12380536 | 12380818 | 12380536 | ID=MS.gene035305.t1.exon13;Parent=MS.gene035305.t1 |
| chr8.4 | CDS | 12380536 | 12380818 | 12380536 | ID=cds.MS.gene035305.t1;Parent=MS.gene035305.t1 |
| chr8.4 | exon | 12379689 | 12379883 | 12379689 | ID=MS.gene035305.t1.exon14;Parent=MS.gene035305.t1 |
| chr8.4 | CDS | 12379689 | 12379883 | 12379689 | ID=cds.MS.gene035305.t1;Parent=MS.gene035305.t1 |
| chr8.4 | exon | 12378866 | 12379027 | 12378866 | ID=MS.gene035305.t1.exon15;Parent=MS.gene035305.t1 |
| chr8.4 | CDS | 12378866 | 12379027 | 12378866 | ID=cds.MS.gene035305.t1;Parent=MS.gene035305.t1 |
| chr8.4 | exon | 12378591 | 12378734 | 12378591 | ID=MS.gene035305.t1.exon16;Parent=MS.gene035305.t1 |
| chr8.4 | CDS | 12378591 | 12378734 | 12378591 | ID=cds.MS.gene035305.t1;Parent=MS.gene035305.t1 |
| chr8.4 | exon | 12378251 | 12378475 | 12378251 | ID=MS.gene035305.t1.exon17;Parent=MS.gene035305.t1 |
| chr8.4 | CDS | 12378251 | 12378475 | 12378251 | ID=cds.MS.gene035305.t1;Parent=MS.gene035305.t1 |
| chr8.4 | exon | 12377169 | 12377462 | 12377169 | ID=MS.gene035305.t1.exon18;Parent=MS.gene035305.t1 |
| chr8.4 | CDS | 12377169 | 12377462 | 12377169 | ID=cds.MS.gene035305.t1;Parent=MS.gene035305.t1 |
| chr8.4 | exon | 12376123 | 12376146 | 12376123 | ID=MS.gene035305.t1.exon19;Parent=MS.gene035305.t1 |
| chr8.4 | CDS | 12376123 | 12376146 | 12376123 | ID=cds.MS.gene035305.t1;Parent=MS.gene035305.t1 |
| Gene Sequence |
| Protein sequence |
