AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene035430

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene035430.t1 MTR_8g051580 93.923 181 11 0 1 181 1 181 1.51e-122 343
MS.gene035430.t1 MTR_1g047550 58.857 175 72 0 1 175 1 175 6.13e-72 215
MS.gene035430.t1 MTR_8g046350 62.722 169 57 2 1 169 1 163 2.79e-68 205
MS.gene035430.t1 MTR_1g063160 55.429 175 78 0 1 175 1 175 1.02e-67 204
MS.gene035430.t1 MTR_1g054265 57.738 168 71 0 1 168 1 168 4.66e-66 200
MS.gene035430.t1 MTR_8g079502 57.229 166 71 0 1 166 1 166 3.28e-65 198
MS.gene035430.t1 MTR_4g131030 52.406 187 72 1 1 170 1 187 4.72e-64 196
MS.gene035430.t1 MTR_4g094632 39.286 168 82 5 1 164 1 152 5.58e-28 102
MS.gene035430.t1 MTR_3g080940 47.273 110 48 2 1 104 8 113 2.32e-24 94.7
MS.gene035430.t1 MTR_1g106070 45.545 101 53 1 2 100 9 109 5.78e-24 93.2
MS.gene035430.t1 MTR_3g052870 37.931 145 72 3 2 142 9 139 3.42e-23 92.0
MS.gene035430.t1 MTR_2g105290 42.308 104 58 1 1 104 11 112 6.29e-23 90.5
MS.gene035430.t1 MTR_5g045560 42.991 107 59 1 1 107 8 112 7.20e-23 91.7
MS.gene035430.t1 MTR_8g086290 40.777 103 59 1 2 104 12 112 9.56e-23 89.7
MS.gene035430.t1 MTR_3g052920 56.522 69 30 0 2 70 9 77 1.93e-22 90.5
MS.gene035430.t1 MTR_1g105920 57.971 69 29 0 2 70 9 77 1.98e-22 90.5
MS.gene035430.t1 MTR_1g108580 36.943 157 81 3 2 143 9 162 4.25e-22 89.4
MS.gene035430.t1 MTR_4g094638 41.121 107 60 1 1 104 1 107 1.33e-21 87.0
MS.gene035430.t1 MTR_1g105910 39.759 166 67 7 2 166 9 142 1.46e-21 88.2
MS.gene035430.t1 MTR_2g030740 56.522 69 30 0 2 70 9 77 2.96e-21 87.4
MS.gene035430.t1 MTR_5g053390 35.256 156 85 3 2 143 9 162 5.26e-21 86.7
MS.gene035430.t1 MTR_3g030770 55.072 69 31 0 2 70 9 77 5.67e-21 86.7
MS.gene035430.t1 MTR_8g043650 55.072 69 31 0 2 70 9 77 5.85e-21 86.7
MS.gene035430.t1 MTR_1g108510 55.072 69 31 0 2 70 9 77 6.92e-21 86.3
MS.gene035430.t1 MTR_1g012570 53.623 69 32 0 2 70 9 77 1.38e-20 85.5
MS.gene035430.t1 MTR_1g077360 49.367 79 40 0 2 80 9 87 1.41e-20 85.5
MS.gene035430.t1 MTR_0121s0100 41.176 119 65 2 2 120 9 122 2.16e-20 82.4
MS.gene035430.t1 MTR_5g055100 44.898 98 41 1 2 99 9 93 2.43e-20 85.1
MS.gene035430.t1 MTR_2g093190 36.943 157 81 3 2 143 9 162 2.60e-20 84.7
MS.gene035430.t1 MTR_1g075600 55.072 69 31 0 2 70 9 77 3.98e-20 84.3
MS.gene035430.t1 MTR_2g085250 33.537 164 93 4 2 151 9 170 7.61e-20 83.6
MS.gene035430.t1 MTR_2g085280 33.537 164 93 4 2 151 9 170 8.10e-20 83.6
MS.gene035430.t1 MTR_0121s0080 52.113 71 34 0 2 72 9 79 4.19e-19 81.6
MS.gene035430.t1 MTR_7g028448 36.800 125 77 2 17 140 27 150 4.60e-19 80.1
MS.gene035430.t1 MTR_4g036915 36.800 125 77 2 17 140 27 150 4.60e-19 80.1
MS.gene035430.t1 MTR_3g030780 49.275 69 35 0 2 70 9 77 5.70e-19 79.0
MS.gene035430.t1 MTR_2g017865 35.878 131 80 2 1 130 16 143 9.31e-19 81.3
MS.gene035430.t1 MTR_2g009890 53.623 69 32 0 1 69 1 69 1.12e-18 81.3
MS.gene035430.t1 MTR_5g066180 47.826 69 36 0 1 69 1 69 2.94e-18 79.3
MS.gene035430.t1 MTR_5g031000 52.174 69 33 0 1 69 1 69 3.39e-18 79.3
MS.gene035430.t1 MTR_1g053070 45.570 79 43 0 1 79 1 79 4.26e-18 79.3
MS.gene035430.t1 MTR_5g031000 52.174 69 33 0 1 69 1 69 4.28e-18 79.0
MS.gene035430.t1 MTR_3g113030 38.519 135 76 3 1 134 1 129 5.31e-18 78.6
MS.gene035430.t1 MTR_5g066960 61.404 57 22 0 1 57 1 57 1.05e-17 73.6
MS.gene035430.t1 MTR_0003s0590 50.725 69 34 0 1 69 1 69 1.60e-17 77.8
MS.gene035430.t1 MTR_1g105905 62.264 53 20 0 18 70 8 60 1.80e-17 77.0
MS.gene035430.t1 MTR_8g033220 37.500 104 63 2 1 104 1 102 3.21e-17 76.6
MS.gene035430.t1 MTR_7g075870 47.826 69 36 0 1 69 1 69 3.32e-17 76.3
MS.gene035430.t1 MTR_8g087860 36.607 112 68 1 1 112 17 125 3.50e-17 76.6
MS.gene035430.t1 MTR_7g062350 60.000 55 22 0 18 72 37 91 3.91e-17 76.6
MS.gene035430.t1 MTR_8g033220 37.500 104 63 2 1 104 1 102 4.36e-17 76.3
MS.gene035430.t1 MTR_4g093970 37.857 140 71 3 1 132 27 158 6.98e-17 75.9
MS.gene035430.t1 MTR_3g452380 50.725 69 34 0 1 69 16 84 7.00e-17 75.9
MS.gene035430.t1 MTR_4g127140 46.835 79 42 0 1 79 11 89 7.23e-17 74.7
MS.gene035430.t1 MTR_3g005530 46.377 69 37 0 1 69 1 69 8.92e-17 75.1
MS.gene035430.t1 MTR_5g021270 50.000 62 31 0 1 62 1 62 1.29e-16 75.1
MS.gene035430.t1 MTR_5g021270 50.000 62 31 0 1 62 1 62 1.30e-16 75.1
MS.gene035430.t1 MTR_1g101970 41.333 75 44 0 1 75 1 75 2.75e-16 73.2
MS.gene035430.t1 MTR_5g046790 45.070 71 36 1 1 71 1 68 3.54e-16 73.6
MS.gene035430.t1 MTR_7g075870 48.571 70 35 1 1 69 1 70 4.33e-16 73.2
MS.gene035430.t1 MTR_4g084740 33.690 187 106 8 1 175 1 181 4.79e-16 74.7
MS.gene035430.t1 MTR_4g102530 46.377 69 37 0 1 69 1 69 4.89e-16 72.8
MS.gene035430.t1 MTR_7g016630 42.857 70 39 1 1 69 1 70 7.58e-16 73.2
MS.gene035430.t1 MTR_4g093030 56.140 57 25 0 1 57 1 57 1.15e-15 70.9
MS.gene035430.t1 MTR_3g067875 60.417 48 19 0 18 65 8 55 1.26e-15 68.2
MS.gene035430.t1 MTR_5g032520 46.154 65 35 0 1 65 1 65 1.29e-15 72.4
MS.gene035430.t1 MTR_1g038300 45.070 71 37 1 1 69 1 71 1.36e-15 72.4
MS.gene035430.t1 MTR_5g032150 46.154 65 35 0 1 65 1 65 1.56e-15 72.0
MS.gene035430.t1 MTR_8g066260 45.070 71 36 1 1 71 1 68 2.82e-15 71.6
MS.gene035430.t1 MTR_1g108500 55.000 60 27 0 18 77 113 172 3.12e-15 72.4
MS.gene035430.t1 MTR_2g461710 49.123 57 29 0 1 57 1 57 4.11e-15 66.6
MS.gene035430.t1 MTR_4g109830 45.070 71 36 1 1 71 1 68 4.87e-15 70.9
MS.gene035430.t1 MTR_8g033270 52.632 57 27 0 1 57 1 57 8.51e-15 70.5
MS.gene035430.t1 MTR_7g016600 32.000 175 100 5 1 164 1 167 9.97e-15 70.1
MS.gene035430.t1 MTR_5g046870 50.877 57 28 0 1 57 1 57 1.44e-14 67.0
MS.gene035430.t1 MTR_6g464720 47.692 65 32 1 1 65 1 63 1.49e-14 69.7
MS.gene035430.t1 MTR_4g036050 54.545 55 25 0 1 55 1 55 1.89e-14 68.6
MS.gene035430.t1 MTR_4g036050 54.545 55 25 0 1 55 1 55 1.95e-14 68.2
MS.gene035430.t1 MTR_4g036050 54.545 55 25 0 1 55 1 55 1.99e-14 68.2
MS.gene035430.t1 MTR_4g036050 54.545 55 25 0 1 55 1 55 2.02e-14 68.2
MS.gene035430.t1 MTR_3g084980 52.632 57 27 0 1 57 1 57 3.15e-14 68.6
MS.gene035430.t1 MTR_8g097090 50.877 57 28 0 1 57 1 57 3.51e-14 68.6
MS.gene035430.t1 MTR_1g029670 41.935 62 36 0 1 62 1 62 3.76e-14 67.4
MS.gene035430.t1 MTR_3g088615 41.935 62 36 0 1 62 1 62 4.62e-14 67.0
MS.gene035430.t1 MTR_4g109810 46.774 62 33 0 1 62 1 62 4.72e-14 68.2
MS.gene035430.t1 MTR_6g015975 49.206 63 31 1 1 62 1 63 4.83e-14 68.2
MS.gene035430.t1 MTR_5g041650 29.762 168 87 4 1 140 38 202 9.00e-14 68.6
MS.gene035430.t1 MTR_3g102570 35.526 152 77 9 1 151 1 132 9.97e-14 68.2
MS.gene035430.t1 MTR_7g075850 52.632 57 27 0 1 57 1 57 1.37e-13 67.0
MS.gene035430.t1 MTR_4g108720 29.341 167 87 4 1 139 1 164 2.10e-13 67.4
MS.gene035430.t1 MTR_3g067910 49.057 53 27 0 18 70 6 58 3.11e-13 63.2
MS.gene035430.t1 MTR_1g041615 68.293 41 13 0 17 57 21 61 6.00e-13 63.2
MS.gene035430.t1 MTR_3g067870 54.167 48 22 0 18 65 92 139 1.64e-11 59.7
MS.gene035430.t1 MTR_3g437790 33.784 148 59 5 19 140 30 164 4.79e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene035430.t1 AT2G34440 41.618 173 89 4 1 162 1 172 3.77e-32 114
MS.gene035430.t1 AT3G66656 39.773 176 89 4 1 160 1 175 7.30e-30 108
MS.gene035430.t1 AT2G24840 37.195 164 88 4 1 150 62 224 1.50e-29 109
MS.gene035430.t1 AT5G60440 42.945 163 66 6 2 143 7 163 1.01e-26 103
MS.gene035430.t1 AT1G01530 45.133 113 59 3 1 112 6 116 5.56e-22 89.7
MS.gene035430.t1 AT3G57230 48.837 86 37 1 1 86 1 79 1.52e-21 85.9
MS.gene035430.t1 AT3G57230 48.837 86 37 1 1 86 1 79 5.30e-21 87.0
MS.gene035430.t1 AT3G57230 48.837 86 37 1 1 86 1 79 5.30e-21 87.0
MS.gene035430.t1 AT1G47760 52.941 68 32 0 1 68 1 68 4.36e-20 83.2
MS.gene035430.t1 AT4G36590 55.882 68 30 0 2 69 7 74 5.31e-20 84.3
MS.gene035430.t1 AT2G22630 55.072 69 31 0 1 69 1 69 7.39e-20 83.6
MS.gene035430.t1 AT2G22630 55.072 69 31 0 1 69 1 69 7.39e-20 83.6
MS.gene035430.t1 AT4G37940 55.072 69 31 0 1 69 1 69 9.89e-20 83.2
MS.gene035430.t1 AT4G37940 55.072 69 31 0 1 69 1 69 1.43e-19 82.4
MS.gene035430.t1 AT4G37940 55.072 69 31 0 1 69 1 69 2.24e-19 81.3
MS.gene035430.t1 AT1G65360 52.174 69 33 0 1 69 6 74 3.88e-19 81.6
MS.gene035430.t1 AT3G04100 36.691 139 65 3 2 135 14 134 3.17e-18 79.0
MS.gene035430.t1 AT3G61120 43.590 78 44 0 1 78 1 78 6.19e-18 79.0
MS.gene035430.t1 AT2G45660 33.929 112 71 1 1 112 1 109 7.09e-18 76.6
MS.gene035430.t1 AT4G24540 35.965 114 69 1 1 110 1 114 1.11e-17 77.8
MS.gene035430.t1 AT1G29962 47.222 72 38 0 2 73 8 79 1.32e-17 76.6
MS.gene035430.t1 AT4G22950 54.839 62 28 0 1 62 1 62 2.13e-17 75.9
MS.gene035430.t1 AT2G45660 47.143 70 37 0 1 70 1 70 2.16e-17 76.6
MS.gene035430.t1 AT3G57390 47.826 69 36 0 1 69 1 69 2.61e-17 76.6
MS.gene035430.t1 AT5G13790 40.741 108 53 2 1 106 1 99 3.00e-17 77.4
MS.gene035430.t1 AT1G28460 45.833 72 39 0 2 73 8 79 3.68e-17 75.5
MS.gene035430.t1 AT4G09960 34.821 112 70 1 1 112 1 109 4.36e-17 75.9
MS.gene035430.t1 AT4G09960 34.821 112 70 1 1 112 1 109 4.76e-17 76.3
MS.gene035430.t1 AT4G09960 34.821 112 70 1 1 112 2 110 4.88e-17 76.3
MS.gene035430.t1 AT3G57390 47.826 69 36 0 1 69 1 69 5.14e-17 76.6
MS.gene035430.t1 AT4G09960 34.821 112 70 1 1 112 11 119 5.33e-17 76.3
MS.gene035430.t1 AT5G13790 40.367 109 55 3 1 106 1 102 5.37e-17 76.6
MS.gene035430.t1 AT3G58780 31.818 154 100 2 1 154 22 170 5.72e-17 76.3
MS.gene035430.t1 AT3G58780 31.818 154 100 2 1 154 16 164 5.82e-17 76.3
MS.gene035430.t1 AT1G71692 42.553 94 50 2 1 93 1 91 6.19e-17 75.5
MS.gene035430.t1 AT2G14210 55.738 61 27 0 1 61 1 61 6.50e-17 75.9
MS.gene035430.t1 AT2G22540 50.769 65 32 0 1 65 1 65 7.42e-17 75.9
MS.gene035430.t1 AT2G22540 50.769 65 32 0 1 65 1 65 7.42e-17 75.9
MS.gene035430.t1 AT4G09960 34.821 112 70 1 1 112 27 135 7.60e-17 76.3
MS.gene035430.t1 AT2G14210 55.738 61 27 0 1 61 1 61 7.79e-17 75.9
MS.gene035430.t1 AT4G09960 34.821 112 70 1 1 112 96 204 1.16e-16 76.6
MS.gene035430.t1 AT3G58780 35.714 112 69 1 1 112 16 124 1.22e-16 75.9
MS.gene035430.t1 AT4G22950 49.275 69 35 0 1 69 1 69 1.35e-16 74.7
MS.gene035430.t1 AT4G22950 49.275 69 35 0 1 69 1 69 1.35e-16 74.7
MS.gene035430.t1 AT4G11880 36.752 117 49 2 1 116 1 93 1.82e-16 73.6
MS.gene035430.t1 AT4G11880 36.752 117 49 2 1 116 1 93 1.82e-16 73.6
MS.gene035430.t1 AT3G54340 51.613 62 30 0 1 62 1 62 1.85e-16 74.7
MS.gene035430.t1 AT2G03710 34.503 171 90 6 1 158 1 162 1.94e-16 73.6
MS.gene035430.t1 AT1G72350 53.623 69 30 1 2 70 43 109 2.05e-16 74.3
MS.gene035430.t1 AT4G18960 35.385 130 80 2 2 130 18 144 2.14e-16 74.7
MS.gene035430.t1 AT5G15800 33.728 169 94 4 1 158 1 162 3.28e-16 74.3
MS.gene035430.t1 AT2G42830 47.826 69 36 0 1 69 16 84 3.76e-16 73.9
MS.gene035430.t1 AT2G42830 47.826 69 36 0 1 69 16 84 4.07e-16 73.9
MS.gene035430.t1 AT5G15800 33.728 169 94 4 1 158 1 162 4.45e-16 73.9
MS.gene035430.t1 AT1G22130 50.704 71 34 1 1 70 1 71 4.48e-16 74.7
MS.gene035430.t1 AT1G69120 47.887 71 34 1 1 71 1 68 5.19e-16 73.6
MS.gene035430.t1 AT5G65070 35.115 131 79 3 1 127 1 129 5.41e-16 71.6
MS.gene035430.t1 AT4G11880 36.752 117 49 2 1 116 1 93 6.69e-16 72.8
MS.gene035430.t1 AT4G11880 36.752 117 49 2 1 116 1 93 6.69e-16 72.8
MS.gene035430.t1 AT5G51860 45.070 71 39 0 1 71 1 71 8.27e-16 72.4
MS.gene035430.t1 AT5G51860 45.070 71 39 0 1 71 1 71 9.75e-16 72.4
MS.gene035430.t1 AT5G10140 52.632 57 27 0 1 57 1 57 1.12e-15 71.2
MS.gene035430.t1 AT1G77980 48.101 79 36 2 1 78 1 75 1.25e-15 73.6
MS.gene035430.t1 AT2G03710 34.503 171 90 6 1 158 1 162 1.27e-15 72.8
MS.gene035430.t1 AT1G18750 29.545 176 83 4 1 138 1 173 1.33e-15 73.9
MS.gene035430.t1 AT5G10140 52.632 57 27 0 1 57 1 57 1.35e-15 71.2
MS.gene035430.t1 AT1G18750 29.545 176 83 4 1 138 1 173 1.35e-15 73.9
MS.gene035430.t1 AT5G51870 43.478 69 39 0 1 69 1 69 1.35e-15 72.0
MS.gene035430.t1 AT2G03710 34.503 171 90 6 1 158 1 162 1.36e-15 72.8
MS.gene035430.t1 AT1G69120 47.887 71 34 1 1 71 1 68 1.42e-15 72.8
MS.gene035430.t1 AT5G65070 35.115 131 79 3 1 127 1 129 1.60e-15 71.6
MS.gene035430.t1 AT5G10140 52.632 57 27 0 1 57 1 57 1.75e-15 71.2
MS.gene035430.t1 AT5G51870 43.478 69 39 0 1 69 1 69 1.75e-15 70.9
MS.gene035430.t1 AT1G26310 30.000 150 103 1 1 150 1 148 1.93e-15 72.4
MS.gene035430.t1 AT5G60910 45.070 71 36 1 1 71 1 68 2.21e-15 72.0
MS.gene035430.t1 AT5G10140 52.632 57 27 0 1 57 1 57 2.25e-15 70.9
MS.gene035430.t1 AT5G51870 43.478 69 39 0 1 69 1 69 2.85e-15 71.2
MS.gene035430.t1 AT5G51870 43.478 69 39 0 1 69 24 92 3.01e-15 70.9
MS.gene035430.t1 AT2G22540 52.632 57 27 0 1 57 1 57 3.06e-15 71.2
MS.gene035430.t1 AT3G30260 50.820 61 30 0 1 61 1 61 3.26e-15 71.6
MS.gene035430.t1 AT1G24260 34.911 169 93 5 1 157 1 164 3.45e-15 71.6
MS.gene035430.t1 AT5G51870 43.478 69 39 0 1 69 11 79 3.56e-15 71.2
MS.gene035430.t1 AT3G02310 34.286 175 97 6 1 164 1 168 3.88e-15 70.5
MS.gene035430.t1 AT3G58780 31.169 154 94 2 1 154 16 157 4.08e-15 71.2
MS.gene035430.t1 AT3G58780 52.459 61 29 0 1 61 16 76 6.61e-15 70.9
MS.gene035430.t1 AT2G45650 43.478 69 39 0 1 69 1 69 6.71e-15 70.9
MS.gene035430.t1 AT3G02310 34.286 175 97 6 1 164 1 168 7.33e-15 70.5
MS.gene035430.t1 AT5G23260 34.911 169 88 7 1 157 1 159 7.59e-15 70.5
MS.gene035430.t1 AT5G23260 36.306 157 82 6 1 149 1 147 8.10e-15 70.5
MS.gene035430.t1 AT4G37435 29.050 179 90 5 1 150 1 171 8.48e-15 69.3
MS.gene035430.t1 AT5G20240 47.619 63 33 0 1 63 1 63 8.71e-15 68.6
MS.gene035430.t1 AT5G23260 34.911 169 88 7 1 157 17 175 9.02e-15 70.5
MS.gene035430.t1 AT5G65070 45.714 70 35 1 1 70 1 67 9.81e-15 70.1
MS.gene035430.t1 AT5G23260 57.895 57 24 0 1 57 17 73 1.26e-14 70.1
MS.gene035430.t1 AT1G46408 49.367 79 34 3 1 73 1 79 1.57e-14 70.1
MS.gene035430.t1 AT5G20240 47.619 63 33 0 1 63 1 63 1.67e-14 68.9
MS.gene035430.t1 AT5G65070 49.123 57 29 0 1 57 1 57 1.70e-14 69.3
MS.gene035430.t1 AT1G24260 35.294 170 90 7 1 157 1 163 1.71e-14 69.7
MS.gene035430.t1 AT5G65070 45.714 70 35 1 1 70 1 67 2.05e-14 68.6
MS.gene035430.t1 AT5G65050 52.727 55 26 0 1 55 1 55 2.35e-14 67.8
MS.gene035430.t1 AT5G62165 40.580 69 41 0 1 69 1 69 2.36e-14 67.4
MS.gene035430.t1 AT5G62165 40.580 69 41 0 1 69 1 69 2.36e-14 67.4
MS.gene035430.t1 AT5G62165 40.580 69 41 0 1 69 1 69 2.36e-14 67.4
MS.gene035430.t1 AT1G18750 45.070 71 37 1 1 69 1 71 2.57e-14 70.5
MS.gene035430.t1 AT5G65060 54.545 55 25 0 1 55 1 55 3.40e-14 67.8
MS.gene035430.t1 AT5G62165 40.580 69 41 0 1 69 1 69 3.88e-14 66.6
MS.gene035430.t1 AT5G62165 40.580 69 41 0 1 69 1 69 3.88e-14 66.6
MS.gene035430.t1 AT5G62165 40.580 69 41 0 1 69 1 69 3.88e-14 66.6
MS.gene035430.t1 AT5G62165 40.580 69 41 0 1 69 1 69 3.88e-14 66.6
MS.gene035430.t1 AT5G62165 40.580 69 41 0 1 69 1 69 3.88e-14 66.6
MS.gene035430.t1 AT5G65080 44.286 70 38 1 1 69 8 77 4.74e-14 67.4
MS.gene035430.t1 AT5G65060 54.545 55 25 0 1 55 1 55 4.85e-14 67.4
MS.gene035430.t1 AT5G62165 31.683 101 58 1 1 90 1 101 4.93e-14 65.5
MS.gene035430.t1 AT5G65060 54.545 55 25 0 1 55 1 55 5.42e-14 67.0
MS.gene035430.t1 AT5G62165 40.580 69 41 0 1 69 1 69 6.09e-14 67.4
MS.gene035430.t1 AT5G62165 40.580 69 41 0 1 69 1 69 6.09e-14 67.4
MS.gene035430.t1 AT5G62165 40.580 69 41 0 1 69 1 69 6.19e-14 67.4
MS.gene035430.t1 AT5G62165 40.580 69 41 0 1 69 1 69 6.19e-14 67.4
MS.gene035430.t1 AT5G62165 40.580 69 41 0 1 69 1 69 6.19e-14 67.4
MS.gene035430.t1 AT1G24260 50.877 57 28 0 1 57 1 57 6.49e-14 67.8
MS.gene035430.t1 AT5G65050 52.727 55 26 0 1 55 1 55 7.80e-14 67.0
MS.gene035430.t1 AT5G65050 52.727 55 26 0 1 55 1 55 8.29e-14 66.6
MS.gene035430.t1 AT5G65050 52.727 55 26 0 1 55 1 55 9.29e-14 66.6
MS.gene035430.t1 AT1G28450 41.667 72 42 0 2 73 8 79 1.42e-13 65.9
MS.gene035430.t1 AT5G65080 48.214 56 29 0 1 56 8 63 1.96e-13 65.9
MS.gene035430.t1 AT1G77950 40.845 71 41 1 1 70 1 71 6.41e-13 65.5
MS.gene035430.t1 AT1G77950 40.845 71 41 1 1 70 1 71 6.41e-13 65.5
MS.gene035430.t1 AT1G77950 40.845 71 41 1 1 70 1 71 6.41e-13 65.5
MS.gene035430.t1 AT1G77950 40.845 71 41 1 1 70 1 71 6.41e-13 65.5
MS.gene035430.t1 AT5G49490 40.196 102 46 2 3 100 46 136 6.70e-13 65.5
MS.gene035430.t1 AT1G17310 52.174 69 31 1 2 70 48 114 1.54e-12 63.9
MS.gene035430.t1 AT1G17310 52.174 69 31 1 2 70 59 125 1.96e-12 63.5
MS.gene035430.t1 AT2G26320 45.902 61 33 0 1 61 17 77 6.44e-12 59.7
MS.gene035430.t1 AT2G03060 32.331 133 60 3 1 106 1 130 1.73e-11 62.0
MS.gene035430.t1 AT2G03060 32.331 133 60 3 1 106 1 130 1.93e-11 62.0
MS.gene035430.t1 AT2G03060 32.331 133 60 3 1 106 1 130 1.93e-11 62.0
MS.gene035430.t1 AT2G03060 32.331 133 60 3 1 106 1 130 1.93e-11 62.0
MS.gene035430.t1 AT1G31140 29.524 105 69 2 1 100 1 105 2.54e-11 60.5
MS.gene035430.t1 AT5G49420 44.000 75 38 1 3 73 8 82 3.59e-11 60.8
MS.gene035430.t1 AT5G38620 44.595 74 37 1 3 72 6 79 4.77e-11 60.8

Find 41 sgRNAs with CRISPR-Local

Find 42 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGCTCTCCTTCAAGAAATT+TGG 0.179978 8.2:-51906097 None:intergenic
CAGTTGGTTTGTATTCTTCT+AGG 0.270957 8.2:-51906248 None:intergenic
TGATTCAGATCCTCTCTGTT+TGG 0.338080 8.2:-51906159 None:intergenic
GCTATTGTTGTGTTCTCCCC+TGG 0.368488 8.2:+51906027 MS.gene035430:CDS
GGGTGAGAGACCCTACTATA+AGG 0.404659 8.2:+51905926 MS.gene035430:CDS
AGGATTTGAAAGATTCATAT+CGG 0.405934 8.2:+51906286 MS.gene035430:CDS
ACATTCTCTAAGCGTCGAAC+AGG 0.429261 8.2:+51905955 MS.gene035430:CDS
CTATTGTTGTGTTCTCCCCT+GGG 0.431123 8.2:+51906028 MS.gene035430:CDS
GTTACTTCTTGCAGAGAAAC+CGG 0.436314 8.2:+51906365 MS.gene035430:CDS
ATATCGGAAATTGAAGGAAA+TGG 0.440694 8.2:+51906302 MS.gene035430:CDS
GTTGCATCCAAATTTCTTGA+AGG 0.449324 8.2:+51906090 MS.gene035430:CDS
AATGTAACCTGCCTTATAGT+AGG 0.459201 8.2:-51905937 None:intergenic
AACAAAGTCGCAAGAAAGAA+AGG 0.460568 8.2:+51906402 MS.gene035430:CDS
ATGAACTTGCCATCTTGTGC+GGG 0.468340 8.2:+51905995 MS.gene035430:CDS
CTTGGGTGCTCGAAAGAGTA+AGG 0.483813 8.2:-51906057 None:intergenic
TCAAGTTGAGTGAGTTCAGT+TGG 0.504549 8.2:-51906264 None:intergenic
AGGAGGCTGAAAATGAAGCT+AGG 0.515324 8.2:+51906211 MS.gene035430:CDS
AGCTTCCTATGCCATCATCT+AGG 0.527794 8.2:-51906122 None:intergenic
AAAGAGTAAGGCTTATTCCC+AGG 0.533879 8.2:-51906045 None:intergenic
AATGAACTTGCCATCTTGTG+CGG 0.538350 8.2:+51905994 MS.gene035430:CDS
AACTGAACTCACTCAACTTG+AGG 0.538837 8.2:+51906266 MS.gene035430:CDS
GATGCAACATCATCAACACT+TGG 0.549337 8.2:-51906075 None:intergenic
ATGTAACCTGCCTTATAGTA+GGG 0.555152 8.2:-51905936 None:intergenic
AATTTCTGCCCCGCACAAGA+TGG 0.555860 8.2:-51906004 None:intergenic
CTTGCAGAGAAACCGGTGGT+TGG 0.563786 8.2:+51906372 MS.gene035430:CDS
GGAGAGCTCAACCTAGATGA+TGG 0.566220 8.2:+51906111 MS.gene035430:CDS
GGAGGCTGAAAATGAAGCTA+GGG 0.567281 8.2:+51906212 MS.gene035430:CDS
GTCGCAAAATTGCGATTGCG+AGG 0.570735 8.2:+51905905 MS.gene035430:CDS
GAGAGACCCTACTATAAGGC+AGG 0.575519 8.2:+51905930 MS.gene035430:CDS
AAGAGTAAGGCTTATTCCCA+GGG 0.598555 8.2:-51906044 None:intergenic
AGATGTGCTAGCTCAACTAA+AGG 0.611567 8.2:+51906191 MS.gene035430:CDS
AGATTCATATCGGAAATTGA+AGG 0.637344 8.2:+51906296 MS.gene035430:CDS
TCGCAAAATTGCGATTGCGA+GGG 0.641127 8.2:+51905906 MS.gene035430:CDS
TGTGCTAGCTCAACTAAAGG+AGG 0.641632 8.2:+51906194 MS.gene035430:CDS
TCGAACAGGATTATTCAAGA+AGG 0.647981 8.2:+51905969 MS.gene035430:CDS
CTCAACCTAGATGATGGCAT+AGG 0.656307 8.2:+51906117 MS.gene035430:CDS
ATGCAACATCATCAACACTT+GGG 0.663273 8.2:-51906074 None:intergenic
TGAACTTGCCATCTTGTGCG+GGG 0.674850 8.2:+51905996 MS.gene035430:CDS
TTCTGAAGTTCCAAACAGAG+AGG 0.695196 8.2:+51906149 MS.gene035430:CDS
ACTTCTTGCAGAGAAACCGG+TGG 0.709944 8.2:+51906368 MS.gene035430:CDS
AGAGTAAGGCTTATTCCCAG+GGG 0.760036 8.2:-51906043 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AGGATTTGAAAGATTCATAT+CGG + chr8.2:51906286-51906305 MS.gene035430:CDS 25.0%
AGATTCATATCGGAAATTGA+AGG + chr8.2:51906296-51906315 MS.gene035430:CDS 30.0%
ATATCGGAAATTGAAGGAAA+TGG + chr8.2:51906302-51906321 MS.gene035430:CDS 30.0%
AACAAAGTCGCAAGAAAGAA+AGG + chr8.2:51906402-51906421 MS.gene035430:CDS 35.0%
AATGTAACCTGCCTTATAGT+AGG - chr8.2:51905940-51905959 None:intergenic 35.0%
ATGCAACATCATCAACACTT+GGG - chr8.2:51906077-51906096 None:intergenic 35.0%
ATGTAACCTGCCTTATAGTA+GGG - chr8.2:51905939-51905958 None:intergenic 35.0%
GTTGCATCCAAATTTCTTGA+AGG + chr8.2:51906090-51906109 MS.gene035430:CDS 35.0%
TCGAACAGGATTATTCAAGA+AGG + chr8.2:51905969-51905988 MS.gene035430:CDS 35.0%
!! CAGTTGGTTTGTATTCTTCT+AGG - chr8.2:51906251-51906270 None:intergenic 35.0%
!!! TTGTTTTTTGTTCCAACCAC+CGG - chr8.2:51906387-51906406 None:intergenic 35.0%
AAAGAGTAAGGCTTATTCCC+AGG - chr8.2:51906048-51906067 None:intergenic 40.0%
AACTGAACTCACTCAACTTG+AGG + chr8.2:51906266-51906285 MS.gene035430:CDS 40.0%
AAGAGTAAGGCTTATTCCCA+GGG - chr8.2:51906047-51906066 None:intergenic 40.0%
AATGAACTTGCCATCTTGTG+CGG + chr8.2:51905994-51906013 MS.gene035430:CDS 40.0%
AGATGTGCTAGCTCAACTAA+AGG + chr8.2:51906191-51906210 MS.gene035430:CDS 40.0%
GAGCTCTCCTTCAAGAAATT+TGG - chr8.2:51906100-51906119 None:intergenic 40.0%
GATGCAACATCATCAACACT+TGG - chr8.2:51906078-51906097 None:intergenic 40.0%
GTTACTTCTTGCAGAGAAAC+CGG + chr8.2:51906365-51906384 MS.gene035430:CDS 40.0%
TGATTCAGATCCTCTCTGTT+TGG - chr8.2:51906162-51906181 None:intergenic 40.0%
!! TCAAGTTGAGTGAGTTCAGT+TGG - chr8.2:51906267-51906286 None:intergenic 40.0%
!! TTCTGAAGTTCCAAACAGAG+AGG + chr8.2:51906149-51906168 MS.gene035430:CDS 40.0%
AGAGTAAGGCTTATTCCCAG+GGG - chr8.2:51906046-51906065 None:intergenic 45.0%
AGCTTCCTATGCCATCATCT+AGG - chr8.2:51906125-51906144 None:intergenic 45.0%
AGGAGGCTGAAAATGAAGCT+AGG + chr8.2:51906211-51906230 MS.gene035430:CDS 45.0%
ATGAACTTGCCATCTTGTGC+GGG + chr8.2:51905995-51906014 MS.gene035430:CDS 45.0%
CTATTGTTGTGTTCTCCCCT+GGG + chr8.2:51906028-51906047 MS.gene035430:CDS 45.0%
GGAGGCTGAAAATGAAGCTA+GGG + chr8.2:51906212-51906231 MS.gene035430:CDS 45.0%
TCGCAAAATTGCGATTGCGA+GGG + chr8.2:51905906-51905925 MS.gene035430:CDS 45.0%
TGTGCTAGCTCAACTAAAGG+AGG + chr8.2:51906194-51906213 MS.gene035430:CDS 45.0%
! CTCAACCTAGATGATGGCAT+AGG + chr8.2:51906117-51906136 MS.gene035430:CDS 45.0%
!! ACATTCTCTAAGCGTCGAAC+AGG + chr8.2:51905955-51905974 MS.gene035430:CDS 45.0%
AATTTCTGCCCCGCACAAGA+TGG - chr8.2:51906007-51906026 None:intergenic 50.0%
ACTTCTTGCAGAGAAACCGG+TGG + chr8.2:51906368-51906387 MS.gene035430:CDS 50.0%
CTTGGGTGCTCGAAAGAGTA+AGG - chr8.2:51906060-51906079 None:intergenic 50.0%
GAGAGACCCTACTATAAGGC+AGG + chr8.2:51905930-51905949 MS.gene035430:CDS 50.0%
GCTATTGTTGTGTTCTCCCC+TGG + chr8.2:51906027-51906046 MS.gene035430:CDS 50.0%
GGAGAGCTCAACCTAGATGA+TGG + chr8.2:51906111-51906130 MS.gene035430:CDS 50.0%
GGGTGAGAGACCCTACTATA+AGG + chr8.2:51905926-51905945 MS.gene035430:CDS 50.0%
GTCGCAAAATTGCGATTGCG+AGG + chr8.2:51905905-51905924 MS.gene035430:CDS 50.0%
TGAACTTGCCATCTTGTGCG+GGG + chr8.2:51905996-51906015 MS.gene035430:CDS 50.0%
CTTGCAGAGAAACCGGTGGT+TGG + chr8.2:51906372-51906391 MS.gene035430:CDS 55.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 51905898 51906443 51905898 ID=MS.gene035430
chr8.2 mRNA 51905898 51906443 51905898 ID=MS.gene035430.t1;Parent=MS.gene035430
chr8.2 exon 51905898 51906443 51905898 ID=MS.gene035430.t1.exon1;Parent=MS.gene035430.t1
chr8.2 CDS 51905898 51906443 51905898 ID=cds.MS.gene035430.t1;Parent=MS.gene035430.t1
Gene Sequence

>MS.gene035430

ATGGGTCGTCGCAAAATTGCGATTGCGAGGGTGAGAGACCCTACTATAAGGCAGGTTACATTCTCTAAGCGTCGAACAGGATTATTCAAGAAGGCAAATGAACTTGCCATCTTGTGCGGGGCAGAAATTGCTATTGTTGTGTTCTCCCCTGGGAATAAGCCTTACTCTTTCGAGCACCCAAGTGTTGATGATGTTGCATCCAAATTTCTTGAAGGAGAGCTCAACCTAGATGATGGCATAGGAAGCTCATCTTCTGAAGTTCCAAACAGAGAGGATCTGAATCAACAACTTGAAGATGTGCTAGCTCAACTAAAGGAGGCTGAAAATGAAGCTAGGGCACATGATGAGATCCTAGAAGAATACAAACCAACTGAACTCACTCAACTTGAGGATTTGAAAGATTCATATCGGAAATTGAAGGAAATGGTGAGATCACGTCTTAGTGATTTAGAAACAACTGAATCTATGTTACTTCTTGCAGAGAAACCGGTGGTTGGAACAAAAAACAAAGTCGCAAGAAAGAAAGGAAAACAACCAATGCTTTAG
Protein sequence

>MS.gene035430.t1

MGRRKIAIARVRDPTIRQVTFSKRRTGLFKKANELAILCGAEIAIVVFSPGNKPYSFEHPSVDDVASKFLEGELNLDDGIGSSSSEVPNREDLNQQLEDVLAQLKEAENEARAHDEILEEYKPTELTQLEDLKDSYRKLKEMVRSRLSDLETTESMLLLAEKPVVGTKNKVARKKGKQPML