AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene035439

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene035439.t1 MTR_8g051580 93.370 181 12 0 1 181 1 181 3.06e-122 342
MS.gene035439.t1 MTR_1g047550 59.429 175 71 0 1 175 1 175 6.69e-72 215
MS.gene035439.t1 MTR_8g046350 62.722 169 57 2 1 169 1 163 1.65e-68 206
MS.gene035439.t1 MTR_1g063160 55.429 175 78 0 1 175 1 175 6.86e-67 202
MS.gene035439.t1 MTR_1g054265 58.333 168 70 0 1 168 1 168 7.97e-66 199
MS.gene035439.t1 MTR_8g079502 57.831 166 70 0 1 166 1 166 5.67e-65 197
MS.gene035439.t1 MTR_4g131030 52.941 187 71 1 1 170 1 187 7.15e-64 196
MS.gene035439.t1 MTR_4g094632 39.634 164 87 4 1 164 1 152 3.12e-28 103
MS.gene035439.t1 MTR_3g080940 43.902 123 59 2 1 117 8 126 1.53e-24 95.5
MS.gene035439.t1 MTR_1g106070 46.535 101 52 1 2 100 9 109 3.46e-24 93.6
MS.gene035439.t1 MTR_3g052870 38.621 145 71 3 2 142 9 139 1.02e-23 93.6
MS.gene035439.t1 MTR_2g105290 44.898 98 52 1 1 98 11 106 2.51e-23 91.3
MS.gene035439.t1 MTR_1g105920 39.759 166 67 7 2 166 9 142 6.41e-23 91.7
MS.gene035439.t1 MTR_3g052920 57.971 69 29 0 2 70 9 77 8.04e-23 91.7
MS.gene035439.t1 MTR_1g108580 37.580 157 80 3 2 143 9 162 1.70e-22 90.5
MS.gene035439.t1 MTR_8g086290 40.777 103 59 1 2 104 12 112 2.11e-22 89.0
MS.gene035439.t1 MTR_1g105910 40.361 166 66 8 2 166 9 142 2.15e-22 90.5
MS.gene035439.t1 MTR_5g045560 54.286 70 32 0 1 70 8 77 6.51e-22 89.0
MS.gene035439.t1 MTR_8g043650 37.952 166 70 7 2 166 9 142 8.83e-22 89.0
MS.gene035439.t1 MTR_2g030740 57.971 69 29 0 2 70 9 77 9.30e-22 88.6
MS.gene035439.t1 MTR_4g094638 42.056 107 59 1 1 104 1 107 1.53e-21 86.7
MS.gene035439.t1 MTR_3g030770 56.522 69 30 0 2 70 9 77 1.96e-21 87.8
MS.gene035439.t1 MTR_5g053390 35.897 156 84 3 2 143 9 162 2.05e-21 87.8
MS.gene035439.t1 MTR_1g108510 56.522 69 30 0 2 70 9 77 2.22e-21 87.4
MS.gene035439.t1 MTR_1g012570 55.072 69 31 0 2 70 9 77 4.69e-21 87.0
MS.gene035439.t1 MTR_1g077360 50.633 79 39 0 2 80 9 87 6.49e-21 86.7
MS.gene035439.t1 MTR_2g093190 37.580 157 80 3 2 143 9 162 1.00e-20 85.9
MS.gene035439.t1 MTR_0121s0100 55.072 69 31 0 2 70 9 77 1.39e-20 83.2
MS.gene035439.t1 MTR_7g028448 37.600 125 76 2 17 140 27 150 1.82e-20 83.6
MS.gene035439.t1 MTR_4g036915 37.600 125 76 2 17 140 27 150 1.82e-20 83.6
MS.gene035439.t1 MTR_1g075600 56.522 69 30 0 2 70 9 77 2.21e-20 85.1
MS.gene035439.t1 MTR_5g055100 38.686 137 68 4 2 135 9 132 2.31e-20 85.1
MS.gene035439.t1 MTR_2g085280 50.633 79 39 0 2 80 9 87 6.92e-20 84.0
MS.gene035439.t1 MTR_2g085250 34.146 164 92 4 2 151 9 170 7.37e-20 83.6
MS.gene035439.t1 MTR_3g030780 50.725 69 34 0 2 70 9 77 1.39e-19 80.5
MS.gene035439.t1 MTR_0121s0080 53.521 71 33 0 2 72 9 79 1.91e-19 82.4
MS.gene035439.t1 MTR_1g105905 64.151 53 19 0 18 70 8 60 1.32e-18 80.1
MS.gene035439.t1 MTR_4g084740 34.759 187 104 8 1 175 1 181 1.60e-18 81.6
MS.gene035439.t1 MTR_7g062350 57.377 61 26 0 12 72 31 91 2.10e-18 80.1
MS.gene035439.t1 MTR_2g009890 41.509 106 53 2 1 100 1 103 4.89e-18 79.7
MS.gene035439.t1 MTR_4g127140 43.689 103 54 2 1 103 11 109 5.10e-18 77.8
MS.gene035439.t1 MTR_2g017865 35.115 131 81 2 1 130 16 143 1.02e-17 78.6
MS.gene035439.t1 MTR_5g066180 46.377 69 37 0 1 69 1 69 2.24e-17 77.0
MS.gene035439.t1 MTR_1g053070 45.570 79 43 0 1 79 1 79 2.47e-17 77.0
MS.gene035439.t1 MTR_5g031000 50.725 69 34 0 1 69 1 69 2.84e-17 77.0
MS.gene035439.t1 MTR_5g031000 50.725 69 34 0 1 69 1 69 3.20e-17 76.6
MS.gene035439.t1 MTR_0003s0590 50.725 69 34 0 1 69 1 69 6.28e-17 76.3
MS.gene035439.t1 MTR_1g101970 42.667 75 43 0 1 75 1 75 8.00e-17 74.7
MS.gene035439.t1 MTR_3g067875 62.500 48 18 0 18 65 8 55 8.60e-17 71.2
MS.gene035439.t1 MTR_5g066960 56.667 60 26 0 1 60 1 60 1.09e-16 70.9
MS.gene035439.t1 MTR_5g046790 46.479 71 35 1 1 71 1 68 1.10e-16 74.7
MS.gene035439.t1 MTR_8g033270 44.000 75 42 0 1 75 1 75 2.03e-16 74.7
MS.gene035439.t1 MTR_7g075870 46.377 69 37 0 1 69 1 69 2.56e-16 73.9
MS.gene035439.t1 MTR_1g108500 56.667 60 26 0 18 77 113 172 2.74e-16 75.5
MS.gene035439.t1 MTR_8g087860 35.714 112 69 1 1 112 17 125 4.03e-16 73.9
MS.gene035439.t1 MTR_3g452380 49.275 69 35 0 1 69 16 84 4.11e-16 73.9
MS.gene035439.t1 MTR_8g033220 36.538 104 64 2 1 104 1 102 8.41e-16 72.8
MS.gene035439.t1 MTR_8g066260 46.479 71 35 1 1 71 1 68 8.76e-16 72.8
MS.gene035439.t1 MTR_8g097090 33.533 167 96 4 1 157 1 162 9.58e-16 72.8
MS.gene035439.t1 MTR_3g005530 44.928 69 38 0 1 69 1 69 1.07e-15 72.4
MS.gene035439.t1 MTR_8g033220 36.538 104 64 2 1 104 1 102 1.13e-15 72.4
MS.gene035439.t1 MTR_3g113030 37.037 135 78 3 1 134 1 129 1.40e-15 72.0
MS.gene035439.t1 MTR_4g109830 46.479 71 35 1 1 71 1 68 1.64e-15 72.0
MS.gene035439.t1 MTR_2g461710 50.877 57 28 0 1 57 1 57 1.77e-15 67.8
MS.gene035439.t1 MTR_7g016600 50.820 61 30 0 1 61 1 61 1.81e-15 72.0
MS.gene035439.t1 MTR_5g021270 48.387 62 32 0 1 62 1 62 1.94e-15 71.6
MS.gene035439.t1 MTR_5g021270 48.387 62 32 0 1 62 1 62 2.06e-15 71.6
MS.gene035439.t1 MTR_4g102530 46.377 69 37 0 1 69 1 69 2.53e-15 70.9
MS.gene035439.t1 MTR_4g093970 37.143 140 72 3 1 132 27 158 3.53e-15 71.2
MS.gene035439.t1 MTR_7g075870 47.143 70 36 1 1 69 1 70 3.59e-15 70.9
MS.gene035439.t1 MTR_5g046870 52.632 57 27 0 1 57 1 57 4.25e-15 68.2
MS.gene035439.t1 MTR_3g084980 30.814 172 108 2 1 164 1 169 5.39e-15 70.9
MS.gene035439.t1 MTR_7g016630 41.429 70 40 1 1 69 1 70 6.66e-15 70.9
MS.gene035439.t1 MTR_6g464720 31.655 139 85 4 1 134 1 134 8.67e-15 70.5
MS.gene035439.t1 MTR_6g015975 31.609 174 102 5 1 164 1 167 1.08e-14 70.1
MS.gene035439.t1 MTR_5g032520 44.615 65 36 0 1 65 1 65 1.35e-14 69.3
MS.gene035439.t1 MTR_4g093030 50.794 63 31 0 1 63 1 63 1.36e-14 68.2
MS.gene035439.t1 MTR_4g036050 54.545 55 25 0 1 55 1 55 1.38e-14 68.6
MS.gene035439.t1 MTR_4g036050 54.545 55 25 0 1 55 1 55 1.46e-14 68.9
MS.gene035439.t1 MTR_4g036050 54.545 55 25 0 1 55 1 55 1.52e-14 68.2
MS.gene035439.t1 MTR_4g036050 54.545 55 25 0 1 55 1 55 1.58e-14 68.6
MS.gene035439.t1 MTR_5g032150 44.615 65 36 0 1 65 1 65 1.84e-14 68.9
MS.gene035439.t1 MTR_3g067910 50.943 53 26 0 18 70 6 58 2.43e-14 66.2
MS.gene035439.t1 MTR_4g109810 46.774 62 33 0 1 62 1 62 3.04e-14 68.9
MS.gene035439.t1 MTR_7g075850 50.820 61 30 0 1 61 1 61 3.49e-14 68.6
MS.gene035439.t1 MTR_1g038300 43.662 71 38 1 1 69 1 71 3.75e-14 68.2
MS.gene035439.t1 MTR_3g102570 35.526 152 77 9 1 151 1 132 1.24e-13 67.8
MS.gene035439.t1 MTR_5g041650 29.762 168 87 4 1 140 38 202 2.73e-13 67.4
MS.gene035439.t1 MTR_1g029670 41.935 62 36 0 1 62 1 62 3.40e-13 64.7
MS.gene035439.t1 MTR_3g088615 41.935 62 36 0 1 62 1 62 4.44e-13 64.7
MS.gene035439.t1 MTR_1g041615 66.667 42 14 0 17 58 21 62 5.76e-13 63.2
MS.gene035439.t1 MTR_3g067870 56.250 48 21 0 18 65 92 139 8.68e-13 63.2
MS.gene035439.t1 MTR_3g437790 32.593 135 78 3 19 140 30 164 1.95e-12 62.8
MS.gene035439.t1 MTR_4g108720 28.743 167 88 4 1 139 1 164 4.58e-12 63.5
MS.gene035439.t1 MTR_3g109930 43.860 57 32 0 17 73 17 73 3.53e-11 59.3
MS.gene035439.t1 MTR_8g022970 38.889 90 55 0 20 109 36 125 4.30e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene035439.t1 AT2G34440 41.618 173 89 4 1 162 1 172 5.00e-32 113
MS.gene035439.t1 AT2G24840 38.415 164 86 4 1 150 62 224 3.19e-31 114
MS.gene035439.t1 AT3G66656 40.341 176 88 4 1 160 1 175 2.77e-30 109
MS.gene035439.t1 AT5G60440 44.172 163 64 6 2 143 7 163 1.08e-27 105
MS.gene035439.t1 AT1G01530 46.903 113 57 3 1 112 6 116 7.48e-23 92.0
MS.gene035439.t1 AT1G47760 55.882 68 30 0 1 68 1 68 7.14e-22 87.8
MS.gene035439.t1 AT1G65360 55.072 69 31 0 1 69 6 74 1.91e-20 85.1
MS.gene035439.t1 AT3G57230 47.674 86 38 1 1 86 1 79 2.48e-20 82.8
MS.gene035439.t1 AT4G36590 57.353 68 29 0 2 69 7 74 2.69e-20 85.1
MS.gene035439.t1 AT3G57230 47.674 86 38 1 1 86 1 79 7.03e-20 84.0
MS.gene035439.t1 AT3G57230 47.674 86 38 1 1 86 1 79 7.03e-20 84.0
MS.gene035439.t1 AT2G22630 53.623 69 32 0 1 69 1 69 4.67e-19 81.3
MS.gene035439.t1 AT2G22630 53.623 69 32 0 1 69 1 69 4.67e-19 81.3
MS.gene035439.t1 AT4G37940 53.623 69 32 0 1 69 1 69 7.30e-19 80.9
MS.gene035439.t1 AT4G37940 53.623 69 32 0 1 69 1 69 9.96e-19 80.5
MS.gene035439.t1 AT4G37940 53.623 69 32 0 1 69 1 69 2.02e-18 78.6
MS.gene035439.t1 AT3G61120 44.872 78 43 0 1 78 1 78 2.36e-18 79.7
MS.gene035439.t1 AT1G29962 48.611 72 37 0 2 73 8 79 2.87e-18 78.6
MS.gene035439.t1 AT3G04100 36.691 139 65 3 2 135 14 134 5.65e-18 78.2
MS.gene035439.t1 AT1G28460 47.222 72 38 0 2 73 8 79 9.87e-18 77.0
MS.gene035439.t1 AT2G45660 37.500 104 58 2 1 104 1 97 3.78e-17 74.7
MS.gene035439.t1 AT1G71692 42.553 94 50 2 1 93 1 91 3.83e-17 75.9
MS.gene035439.t1 AT1G24260 36.471 170 88 7 1 157 1 163 9.42e-17 75.9
MS.gene035439.t1 AT2G45660 37.500 104 58 2 1 104 1 97 1.04e-16 75.1
MS.gene035439.t1 AT2G45650 46.377 69 37 0 1 69 1 69 1.19e-16 75.5
MS.gene035439.t1 AT1G77980 37.162 148 80 6 1 143 1 140 1.33e-16 76.3
MS.gene035439.t1 AT1G24260 36.257 171 88 7 1 157 1 164 1.34e-16 75.5
MS.gene035439.t1 AT1G72350 53.623 69 30 1 2 70 43 109 1.66e-16 74.7
MS.gene035439.t1 AT4G22950 53.226 62 29 0 1 62 1 62 1.74e-16 73.6
MS.gene035439.t1 AT3G57390 47.826 69 36 0 1 69 1 69 1.78e-16 74.7
MS.gene035439.t1 AT1G69120 49.296 71 33 1 1 71 1 68 1.81e-16 74.7
MS.gene035439.t1 AT5G15800 35.465 172 87 6 1 158 1 162 2.48e-16 74.7
MS.gene035439.t1 AT5G13790 47.826 69 36 0 1 69 1 69 2.98e-16 74.7
MS.gene035439.t1 AT2G22540 49.231 65 33 0 1 65 1 65 3.05e-16 74.3
MS.gene035439.t1 AT2G22540 49.231 65 33 0 1 65 1 65 3.05e-16 74.3
MS.gene035439.t1 AT5G15800 35.465 172 87 6 1 158 1 162 3.11e-16 74.3
MS.gene035439.t1 AT5G13790 47.826 69 36 0 1 69 1 69 3.35e-16 74.3
MS.gene035439.t1 AT3G57390 47.826 69 36 0 1 69 1 69 3.43e-16 74.3
MS.gene035439.t1 AT1G26310 30.667 150 102 1 1 150 1 148 3.99e-16 73.9
MS.gene035439.t1 AT4G24540 43.478 69 39 0 1 69 1 69 4.40e-16 73.6
MS.gene035439.t1 AT1G69120 49.296 71 33 1 1 71 1 68 4.48e-16 73.9
MS.gene035439.t1 AT2G14210 54.098 61 28 0 1 61 1 61 5.24e-16 73.6
MS.gene035439.t1 AT4G09960 33.929 112 71 1 1 112 1 109 5.34e-16 73.2
MS.gene035439.t1 AT4G09960 33.929 112 71 1 1 112 1 109 5.59e-16 73.2
MS.gene035439.t1 AT4G09960 33.929 112 71 1 1 112 2 110 5.61e-16 73.2
MS.gene035439.t1 AT4G09960 33.929 112 71 1 1 112 11 119 6.54e-16 73.2
MS.gene035439.t1 AT5G60910 46.479 71 35 1 1 71 1 68 6.72e-16 73.2
MS.gene035439.t1 AT2G14210 54.098 61 28 0 1 61 1 61 6.95e-16 73.2
MS.gene035439.t1 AT1G22130 50.704 71 34 1 1 70 1 71 7.29e-16 74.3
MS.gene035439.t1 AT3G58780 31.169 154 101 2 1 154 16 164 7.53e-16 73.2
MS.gene035439.t1 AT3G58780 31.169 154 101 2 1 154 22 170 8.58e-16 73.2
MS.gene035439.t1 AT3G30260 52.459 61 29 0 1 61 1 61 8.63e-16 73.2
MS.gene035439.t1 AT4G09960 33.929 112 71 1 1 112 27 135 8.71e-16 73.2
MS.gene035439.t1 AT4G22950 47.826 69 36 0 1 69 1 69 1.17e-15 72.4
MS.gene035439.t1 AT4G22950 47.826 69 36 0 1 69 1 69 1.17e-15 72.4
MS.gene035439.t1 AT4G09960 33.929 112 71 1 1 112 96 204 1.21e-15 73.6
MS.gene035439.t1 AT2G03710 34.503 171 90 6 1 158 1 162 1.35e-15 71.2
MS.gene035439.t1 AT3G58780 34.821 112 70 1 1 112 16 124 1.61e-15 72.8
MS.gene035439.t1 AT3G02310 36.723 177 90 7 1 164 1 168 1.80e-15 71.2
MS.gene035439.t1 AT3G54340 50.000 62 31 0 1 62 1 62 2.02e-15 72.0
MS.gene035439.t1 AT1G46408 50.633 79 33 3 1 73 1 79 3.07e-15 72.0
MS.gene035439.t1 AT2G42830 46.377 69 37 0 1 69 16 84 3.14e-15 71.6
MS.gene035439.t1 AT4G11880 52.459 61 29 0 1 61 1 61 3.16e-15 70.1
MS.gene035439.t1 AT4G11880 52.459 61 29 0 1 61 1 61 3.16e-15 70.1
MS.gene035439.t1 AT2G42830 46.377 69 37 0 1 69 16 84 3.61e-15 71.2
MS.gene035439.t1 AT2G03710 56.140 57 25 0 1 57 1 57 4.46e-15 71.2
MS.gene035439.t1 AT4G18960 34.615 130 81 2 2 130 18 144 4.47e-15 71.2
MS.gene035439.t1 AT2G03710 56.140 57 25 0 1 57 1 57 4.66e-15 71.2
MS.gene035439.t1 AT5G65070 35.115 131 79 3 1 127 1 129 4.71e-15 68.9
MS.gene035439.t1 AT1G24260 37.410 139 74 5 1 133 1 132 5.09e-15 70.9
MS.gene035439.t1 AT3G02310 36.723 177 90 8 1 164 1 168 5.74e-15 70.9
MS.gene035439.t1 AT5G51860 43.662 71 40 0 1 71 1 71 5.77e-15 70.1
MS.gene035439.t1 AT5G51860 43.662 71 40 0 1 71 1 71 6.70e-15 70.1
MS.gene035439.t1 AT4G11880 52.459 61 29 0 1 61 1 61 9.51e-15 69.7
MS.gene035439.t1 AT4G11880 52.459 61 29 0 1 61 1 61 9.51e-15 69.7
MS.gene035439.t1 AT5G10140 52.632 57 27 0 1 57 1 57 1.00e-14 68.6
MS.gene035439.t1 AT5G10140 52.632 57 27 0 1 57 1 57 1.17e-14 68.9
MS.gene035439.t1 AT5G65070 35.115 131 79 3 1 127 1 129 1.19e-14 69.3
MS.gene035439.t1 AT5G65070 43.590 78 41 2 1 76 1 77 1.47e-14 69.3
MS.gene035439.t1 AT5G10140 52.632 57 27 0 1 57 1 57 1.52e-14 68.9
MS.gene035439.t1 AT5G51870 42.029 69 40 0 1 69 1 69 1.56e-14 68.9
MS.gene035439.t1 AT5G10140 51.724 58 28 0 1 58 1 58 1.99e-14 68.2
MS.gene035439.t1 AT2G22540 50.877 57 28 0 1 57 1 57 2.19e-14 68.9
MS.gene035439.t1 AT1G18750 28.977 176 84 4 1 138 1 173 2.65e-14 70.1
MS.gene035439.t1 AT1G18750 28.977 176 84 4 1 138 1 173 2.71e-14 70.1
MS.gene035439.t1 AT3G58780 39.535 86 39 1 1 73 16 101 2.76e-14 68.9
MS.gene035439.t1 AT5G51870 42.029 69 40 0 1 69 1 69 2.78e-14 67.8
MS.gene035439.t1 AT5G51870 42.029 69 40 0 1 69 1 69 3.04e-14 68.6
MS.gene035439.t1 AT1G28450 43.056 72 41 0 2 73 8 79 3.12e-14 67.8
MS.gene035439.t1 AT5G20240 47.619 63 33 0 1 63 1 63 4.04e-14 66.6
MS.gene035439.t1 AT5G51870 42.029 69 40 0 1 69 11 79 4.22e-14 68.2
MS.gene035439.t1 AT5G51870 42.029 69 40 0 1 69 24 92 4.39e-14 67.4
MS.gene035439.t1 AT3G58780 50.820 61 30 0 1 61 16 76 4.63e-14 68.6
MS.gene035439.t1 AT5G23260 34.731 167 91 7 1 157 1 159 4.78e-14 68.6
MS.gene035439.t1 AT5G23260 36.129 155 85 6 1 149 1 147 4.84e-14 68.2
MS.gene035439.t1 AT5G23260 34.731 167 91 7 1 157 17 175 5.18e-14 68.6
MS.gene035439.t1 AT5G20240 47.619 63 33 0 1 63 1 63 7.22e-14 67.4
MS.gene035439.t1 AT5G23260 35.583 163 90 7 1 157 17 170 7.44e-14 68.2
MS.gene035439.t1 AT5G65070 41.463 82 46 1 1 82 1 80 7.45e-14 67.4
MS.gene035439.t1 AT4G37435 33.129 163 96 6 1 153 1 160 1.30e-13 66.2
MS.gene035439.t1 AT5G65070 38.462 91 54 1 1 91 1 89 1.64e-13 66.2
MS.gene035439.t1 AT5G65050 52.727 55 26 0 1 55 1 55 2.05e-13 65.5
MS.gene035439.t1 AT1G17310 57.407 54 21 1 17 70 63 114 2.45e-13 65.9
MS.gene035439.t1 AT5G62165 39.130 69 42 0 1 69 1 69 2.47e-13 64.7
MS.gene035439.t1 AT5G62165 39.130 69 42 0 1 69 1 69 2.47e-13 64.7
MS.gene035439.t1 AT5G62165 39.130 69 42 0 1 69 1 69 2.47e-13 64.7
MS.gene035439.t1 AT1G17310 57.407 54 21 1 17 70 74 125 3.05e-13 65.9
MS.gene035439.t1 AT5G49490 46.667 75 36 1 3 73 46 120 3.27e-13 66.6
MS.gene035439.t1 AT5G65080 44.286 70 38 1 1 69 8 77 3.46e-13 65.1
MS.gene035439.t1 AT5G65060 54.545 55 25 0 1 55 1 55 3.79e-13 65.1
MS.gene035439.t1 AT5G65060 54.545 55 25 0 1 55 1 55 4.65e-13 64.7
MS.gene035439.t1 AT5G62165 30.693 101 59 1 1 90 1 101 4.74e-13 62.8
MS.gene035439.t1 AT5G62165 39.130 69 42 0 1 69 1 69 4.99e-13 63.9
MS.gene035439.t1 AT5G62165 39.130 69 42 0 1 69 1 69 4.99e-13 63.9
MS.gene035439.t1 AT5G62165 39.130 69 42 0 1 69 1 69 4.99e-13 63.9
MS.gene035439.t1 AT5G62165 39.130 69 42 0 1 69 1 69 4.99e-13 63.9
MS.gene035439.t1 AT5G62165 39.130 69 42 0 1 69 1 69 4.99e-13 63.9
MS.gene035439.t1 AT5G65060 54.545 55 25 0 1 55 1 55 5.14e-13 64.7
MS.gene035439.t1 AT1G77950 40.845 71 41 1 1 70 1 71 5.98e-13 65.5
MS.gene035439.t1 AT1G77950 40.845 71 41 1 1 70 1 71 5.98e-13 65.5
MS.gene035439.t1 AT1G77950 40.845 71 41 1 1 70 1 71 5.98e-13 65.5
MS.gene035439.t1 AT1G77950 40.845 71 41 1 1 70 1 71 5.98e-13 65.5
MS.gene035439.t1 AT5G62165 39.130 69 42 0 1 69 1 69 6.24e-13 64.7
MS.gene035439.t1 AT5G62165 39.130 69 42 0 1 69 1 69 6.24e-13 64.7
MS.gene035439.t1 AT5G62165 39.130 69 42 0 1 69 1 69 6.24e-13 64.7
MS.gene035439.t1 AT5G62165 39.130 69 42 0 1 69 1 69 6.47e-13 64.3
MS.gene035439.t1 AT5G62165 39.130 69 42 0 1 69 1 69 6.47e-13 64.3
MS.gene035439.t1 AT5G65050 52.727 55 26 0 1 55 1 55 6.88e-13 64.3
MS.gene035439.t1 AT5G65050 52.727 55 26 0 1 55 1 55 8.09e-13 63.9
MS.gene035439.t1 AT5G65050 52.727 55 26 0 1 55 1 55 8.27e-13 63.9
MS.gene035439.t1 AT1G18750 43.662 71 38 1 1 69 1 71 9.13e-13 65.9
MS.gene035439.t1 AT5G65080 48.214 56 29 0 1 56 8 63 1.75e-12 63.5
MS.gene035439.t1 AT1G60920 43.421 76 38 2 3 73 5 80 1.85e-12 63.2
MS.gene035439.t1 AT5G49420 46.753 77 33 3 3 73 8 82 3.98e-12 63.9
MS.gene035439.t1 AT5G38620 47.368 76 32 3 3 72 6 79 6.22e-12 63.2
MS.gene035439.t1 AT1G31140 31.068 103 66 2 1 98 1 103 1.50e-11 60.8
MS.gene035439.t1 AT2G26320 45.902 61 33 0 1 61 17 77 1.51e-11 58.9
MS.gene035439.t1 AT2G03060 33.083 133 59 4 1 106 1 130 2.49e-11 61.6
MS.gene035439.t1 AT2G03060 33.083 133 59 4 1 106 1 130 3.08e-11 61.2
MS.gene035439.t1 AT2G03060 33.083 133 59 4 1 106 1 130 3.08e-11 61.2
MS.gene035439.t1 AT2G03060 33.083 133 59 4 1 106 1 130 3.08e-11 61.2
MS.gene035439.t1 AT5G04640 32.812 128 73 3 3 117 5 132 4.11e-11 60.8

Find 43 sgRNAs with CRISPR-Local

Find 44 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGCTCTCCTTCAAGAAATT+TGG 0.179978 8.2:-51739576 None:intergenic
CAGTTGGTTTGTATTCTTCT+AGG 0.270957 8.2:-51739727 None:intergenic
TGATTCAGATCCTCTCTGTT+TGG 0.338080 8.2:-51739638 None:intergenic
GGGAATAAGCCTTACTCATT+CGG 0.356415 8.2:+51739527 MS.gene035439:CDS
GCTATTGTTGTGTTCTCCCC+TGG 0.368488 8.2:+51739506 MS.gene035439:CDS
AGGATTTGAAAGATTCATAT+CGG 0.405934 8.2:+51739765 MS.gene035439:CDS
GGAATAAGCCTTACTCATTC+GGG 0.418546 8.2:+51739528 MS.gene035439:CDS
ACATTCTCTAAGCGTCGAAC+AGG 0.429261 8.2:+51739434 MS.gene035439:CDS
CTATTGTTGTGTTCTCCCCT+GGG 0.431123 8.2:+51739507 MS.gene035439:CDS
GTTACTTCTTGCAGAGAAAC+CGG 0.436314 8.2:+51739844 MS.gene035439:CDS
ATATCGGAAATTGAAGGAAA+TGG 0.440694 8.2:+51739781 MS.gene035439:CDS
GTTGCATCCAAATTTCTTGA+AGG 0.449324 8.2:+51739569 MS.gene035439:CDS
AATGTAACCTGCCTTATGAT+AGG 0.459002 8.2:-51739416 None:intergenic
AACAAAGTCGCAAGAAAGAA+AGG 0.460568 8.2:+51739881 MS.gene035439:CDS
ATGAACTTGCCATCTTGTGC+GGG 0.468340 8.2:+51739474 MS.gene035439:CDS
CTTGGGTGCCCGAATGAGTA+AGG 0.483546 8.2:-51739536 None:intergenic
TCAAGTTGAGTGAGTTCAGT+TGG 0.504549 8.2:-51739743 None:intergenic
AATGAGTAAGGCTTATTCCC+AGG 0.515959 8.2:-51739524 None:intergenic
AGCTTCCTATGCCATCATCT+AGG 0.527794 8.2:-51739601 None:intergenic
AATGAACTTGCCATCTTGTG+CGG 0.538350 8.2:+51739473 MS.gene035439:CDS
AACTGAACTCACTCAACTTG+AGG 0.538837 8.2:+51739745 MS.gene035439:CDS
ATGTAACCTGCCTTATGATA+GGG 0.543825 8.2:-51739415 None:intergenic
GTCGCAAAATTGCGATTGTG+AGG 0.548876 8.2:+51739384 MS.gene035439:CDS
GATGCAACATCATCAACACT+TGG 0.549337 8.2:-51739554 None:intergenic
AATTTCTGCCCCGCACAAGA+TGG 0.555860 8.2:-51739483 None:intergenic
GGGTGAGAGACCCTATCATA+AGG 0.562652 8.2:+51739405 MS.gene035439:CDS
CTTGCAGAGAAACCGGTGGT+TGG 0.563786 8.2:+51739851 MS.gene035439:CDS
GGAGAGCTCAACCTAGATGA+TGG 0.566220 8.2:+51739590 MS.gene035439:CDS
GAGAGACCCTATCATAAGGC+AGG 0.574297 8.2:+51739409 MS.gene035439:CDS
ATGAGTAAGGCTTATTCCCA+GGG 0.586047 8.2:-51739523 None:intergenic
GGAGGCTGAAAATGAAGCAA+GGG 0.601567 8.2:+51739691 MS.gene035439:CDS
AGGAGGCTGAAAATGAAGCA+AGG 0.605221 8.2:+51739690 MS.gene035439:CDS
AGATTCATATCGGAAATTGA+AGG 0.637344 8.2:+51739775 MS.gene035439:CDS
TCGCAAAATTGCGATTGTGA+GGG 0.641127 8.2:+51739385 MS.gene035439:CDS
TCGAACAGGATTATTCAAGA+AGG 0.647981 8.2:+51739448 MS.gene035439:CDS
CTCAACCTAGATGATGGCAT+AGG 0.656307 8.2:+51739596 MS.gene035439:CDS
ATATGTGCTAGCTCAACTCA+AGG 0.659831 8.2:+51739670 MS.gene035439:CDS
ATGCAACATCATCAACACTT+GGG 0.663273 8.2:-51739553 None:intergenic
TGAACTTGCCATCTTGTGCG+GGG 0.674850 8.2:+51739475 MS.gene035439:CDS
TTCTGAAGTTCCAAACAGAG+AGG 0.695196 8.2:+51739628 MS.gene035439:CDS
ACTTCTTGCAGAGAAACCGG+TGG 0.709944 8.2:+51739847 MS.gene035439:CDS
TGTGCTAGCTCAACTCAAGG+AGG 0.720766 8.2:+51739673 MS.gene035439:CDS
TGAGTAAGGCTTATTCCCAG+GGG 0.760036 8.2:-51739522 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AGGATTTGAAAGATTCATAT+CGG + chr8.2:51739765-51739784 MS.gene035439:CDS 25.0%
AGATTCATATCGGAAATTGA+AGG + chr8.2:51739775-51739794 MS.gene035439:CDS 30.0%
ATATCGGAAATTGAAGGAAA+TGG + chr8.2:51739781-51739800 MS.gene035439:CDS 30.0%
AACAAAGTCGCAAGAAAGAA+AGG + chr8.2:51739881-51739900 MS.gene035439:CDS 35.0%
AATGTAACCTGCCTTATGAT+AGG - chr8.2:51739419-51739438 None:intergenic 35.0%
ATGCAACATCATCAACACTT+GGG - chr8.2:51739556-51739575 None:intergenic 35.0%
ATGTAACCTGCCTTATGATA+GGG - chr8.2:51739418-51739437 None:intergenic 35.0%
GTTGCATCCAAATTTCTTGA+AGG + chr8.2:51739569-51739588 MS.gene035439:CDS 35.0%
TCGAACAGGATTATTCAAGA+AGG + chr8.2:51739448-51739467 MS.gene035439:CDS 35.0%
!! CAGTTGGTTTGTATTCTTCT+AGG - chr8.2:51739730-51739749 None:intergenic 35.0%
!!! TTGTTTTTTGTTCCAACCAC+CGG - chr8.2:51739866-51739885 None:intergenic 35.0%
AACTGAACTCACTCAACTTG+AGG + chr8.2:51739745-51739764 MS.gene035439:CDS 40.0%
AATGAACTTGCCATCTTGTG+CGG + chr8.2:51739473-51739492 MS.gene035439:CDS 40.0%
AATGAGTAAGGCTTATTCCC+AGG - chr8.2:51739527-51739546 None:intergenic 40.0%
ATATGTGCTAGCTCAACTCA+AGG + chr8.2:51739670-51739689 MS.gene035439:CDS 40.0%
ATGAGTAAGGCTTATTCCCA+GGG - chr8.2:51739526-51739545 None:intergenic 40.0%
GAGCTCTCCTTCAAGAAATT+TGG - chr8.2:51739579-51739598 None:intergenic 40.0%
GATGCAACATCATCAACACT+TGG - chr8.2:51739557-51739576 None:intergenic 40.0%
GGAATAAGCCTTACTCATTC+GGG + chr8.2:51739528-51739547 MS.gene035439:CDS 40.0%
GGGAATAAGCCTTACTCATT+CGG + chr8.2:51739527-51739546 MS.gene035439:CDS 40.0%
GTTACTTCTTGCAGAGAAAC+CGG + chr8.2:51739844-51739863 MS.gene035439:CDS 40.0%
TCGCAAAATTGCGATTGTGA+GGG + chr8.2:51739385-51739404 MS.gene035439:CDS 40.0%
TGATTCAGATCCTCTCTGTT+TGG - chr8.2:51739641-51739660 None:intergenic 40.0%
!! TCAAGTTGAGTGAGTTCAGT+TGG - chr8.2:51739746-51739765 None:intergenic 40.0%
!! TTCTGAAGTTCCAAACAGAG+AGG + chr8.2:51739628-51739647 MS.gene035439:CDS 40.0%
AGCTTCCTATGCCATCATCT+AGG - chr8.2:51739604-51739623 None:intergenic 45.0%
AGGAGGCTGAAAATGAAGCA+AGG + chr8.2:51739690-51739709 MS.gene035439:CDS 45.0%
ATGAACTTGCCATCTTGTGC+GGG + chr8.2:51739474-51739493 MS.gene035439:CDS 45.0%
CTATTGTTGTGTTCTCCCCT+GGG + chr8.2:51739507-51739526 MS.gene035439:CDS 45.0%
GGAGGCTGAAAATGAAGCAA+GGG + chr8.2:51739691-51739710 MS.gene035439:CDS 45.0%
GTCGCAAAATTGCGATTGTG+AGG + chr8.2:51739384-51739403 MS.gene035439:CDS 45.0%
TGAGTAAGGCTTATTCCCAG+GGG - chr8.2:51739525-51739544 None:intergenic 45.0%
! CTCAACCTAGATGATGGCAT+AGG + chr8.2:51739596-51739615 MS.gene035439:CDS 45.0%
!! ACATTCTCTAAGCGTCGAAC+AGG + chr8.2:51739434-51739453 MS.gene035439:CDS 45.0%
AATTTCTGCCCCGCACAAGA+TGG - chr8.2:51739486-51739505 None:intergenic 50.0%
ACTTCTTGCAGAGAAACCGG+TGG + chr8.2:51739847-51739866 MS.gene035439:CDS 50.0%
GAGAGACCCTATCATAAGGC+AGG + chr8.2:51739409-51739428 MS.gene035439:CDS 50.0%
GCTATTGTTGTGTTCTCCCC+TGG + chr8.2:51739506-51739525 MS.gene035439:CDS 50.0%
GGAGAGCTCAACCTAGATGA+TGG + chr8.2:51739590-51739609 MS.gene035439:CDS 50.0%
GGGTGAGAGACCCTATCATA+AGG + chr8.2:51739405-51739424 MS.gene035439:CDS 50.0%
TGAACTTGCCATCTTGTGCG+GGG + chr8.2:51739475-51739494 MS.gene035439:CDS 50.0%
TGTGCTAGCTCAACTCAAGG+AGG + chr8.2:51739673-51739692 MS.gene035439:CDS 50.0%
CTTGCAGAGAAACCGGTGGT+TGG + chr8.2:51739851-51739870 MS.gene035439:CDS 55.0%
CTTGGGTGCCCGAATGAGTA+AGG - chr8.2:51739539-51739558 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 51739377 51739922 51739377 ID=MS.gene035439
chr8.2 mRNA 51739377 51739922 51739377 ID=MS.gene035439.t1;Parent=MS.gene035439
chr8.2 exon 51739377 51739922 51739377 ID=MS.gene035439.t1.exon1;Parent=MS.gene035439.t1
chr8.2 CDS 51739377 51739922 51739377 ID=cds.MS.gene035439.t1;Parent=MS.gene035439.t1
Gene Sequence

>MS.gene035439

ATGGGTCGTCGCAAAATTGCGATTGTGAGGGTGAGAGACCCTATCATAAGGCAGGTTACATTCTCTAAGCGTCGAACAGGATTATTCAAGAAGGCAAATGAACTTGCCATCTTGTGCGGGGCAGAAATTGCTATTGTTGTGTTCTCCCCTGGGAATAAGCCTTACTCATTCGGGCACCCAAGTGTTGATGATGTTGCATCCAAATTTCTTGAAGGAGAGCTCAACCTAGATGATGGCATAGGAAGCTCATCTTCTGAAGTTCCAAACAGAGAGGATCTGAATCAACAACTTGAATATGTGCTAGCTCAACTCAAGGAGGCTGAAAATGAAGCAAGGGCACATGATGAGATCCTAGAAGAATACAAACCAACTGAACTCACTCAACTTGAGGATTTGAAAGATTCATATCGGAAATTGAAGGAAATGGTGAGATCACGTCTTAGTGATTTAGAAACAACTGAATCTATGTTACTTCTTGCAGAGAAACCGGTGGTTGGAACAAAAAACAAAGTCGCAAGAAAGAAAGGAAAACAACCAATGCTTTAG
Protein sequence

>MS.gene035439.t1

MGRRKIAIVRVRDPIIRQVTFSKRRTGLFKKANELAILCGAEIAIVVFSPGNKPYSFGHPSVDDVASKFLEGELNLDDGIGSSSSEVPNREDLNQQLEYVLAQLKEAENEARAHDEILEEYKPTELTQLEDLKDSYRKLKEMVRSRLSDLETTESMLLLAEKPVVGTKNKVARKKGKQPML