AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene035538

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene035538.t1 MTR_8g070075 88.163 735 80 2 1 734 30 758 0.0 1336
MS.gene035538.t1 MTR_8g070070 75.538 744 157 8 5 738 41 769 0.0 1107
MS.gene035538.t1 MTR_8g071030 65.390 731 202 7 13 738 65 749 0.0 946
MS.gene035538.t1 MTR_1g035420 67.653 473 149 3 266 737 189 658 0.0 679
MS.gene035538.t1 MTR_1g035400 60.645 465 180 3 266 729 106 568 0.0 588
MS.gene035538.t1 MTR_6g044690 56.383 470 182 8 266 726 109 564 0.0 533
MS.gene035538.t1 MTR_0376s0030 51.267 513 223 8 238 737 79 577 3.29e-178 522
MS.gene035538.t1 MTR_6g043960 47.500 520 223 10 219 726 1 482 2.92e-156 462
MS.gene035538.t1 MTR_2g054460 43.463 566 202 12 170 726 8 464 3.70e-138 415
MS.gene035538.t1 MTR_5g013420 40.476 462 248 9 269 724 618 1058 2.05e-104 344
MS.gene035538.t1 MTR_5g013420 40.476 462 248 9 269 724 618 1058 2.50e-104 344
MS.gene035538.t1 MTR_7g088370 40.546 476 247 13 261 726 231 680 1.20e-103 333
MS.gene035538.t1 MTR_3g011440 39.703 471 262 11 266 725 174 633 6.57e-102 327
MS.gene035538.t1 MTR_4g010830 40.393 458 253 8 269 724 510 949 7.96e-101 332
MS.gene035538.t1 MTR_8g042750 39.246 451 252 11 286 726 220 658 3.04e-97 316
MS.gene035538.t1 MTR_4g010550 37.473 459 235 11 269 724 24 433 1.47e-86 281
MS.gene035538.t1 MTR_7g084090 37.166 487 274 15 260 725 252 727 5.14e-86 288
MS.gene035538.t1 MTR_6g061270 37.131 474 266 16 272 725 203 664 8.76e-84 280
MS.gene035538.t1 MTR_6g061200 36.052 466 253 16 272 725 203 635 1.73e-76 259
MS.gene035538.t1 MTR_7g084090 39.295 369 202 12 260 615 252 611 5.63e-69 239
MS.gene035538.t1 MTR_7g445710 32.353 476 229 17 269 724 110 512 7.67e-57 203
MS.gene035538.t1 MTR_7g445530 32.143 476 230 17 269 724 110 512 1.12e-56 202
MS.gene035538.t1 MTR_1g048950 33.333 474 267 13 266 724 68 507 1.60e-55 200
MS.gene035538.t1 MTR_7g450730 30.952 462 219 14 269 724 107 474 2.07e-53 192
MS.gene035538.t1 MTR_7g052480 33.117 308 192 8 428 725 223 526 6.46e-43 164
MS.gene035538.t1 MTR_7g445600 34.000 150 62 2 575 724 243 355 5.20e-21 95.9
MS.gene035538.t1 MTR_7g445600 41.860 129 61 5 269 397 106 220 4.28e-15 77.8
MS.gene035538.t1 MTR_8g078505 25.826 333 194 10 423 724 205 515 1.95e-20 96.3
MS.gene035538.t1 MTR_6g044000 69.811 53 16 0 674 726 117 169 4.35e-20 88.6
MS.gene035538.t1 MTR_6g044000 36.290 124 71 2 219 338 1 120 1.67e-16 78.2
MS.gene035538.t1 MTR_8g078490 31.217 189 110 4 541 724 1056 1229 3.64e-19 93.2
MS.gene035538.t1 MTR_1g069570 25.733 307 156 12 476 726 430 720 8.34e-19 91.7
MS.gene035538.t1 MTR_5g018850 28.387 310 167 13 468 738 1203 1496 2.88e-18 90.5
MS.gene035538.t1 MTR_4g132610 30.270 185 115 4 542 724 851 1023 4.90e-18 89.7
MS.gene035538.t1 MTR_1g080340 24.756 307 160 11 476 726 269 560 1.05e-16 84.7
MS.gene035538.t1 MTR_5g098680 34.810 158 89 4 294 446 267 415 1.69e-14 77.8
MS.gene035538.t1 MTR_7g445810 39.375 160 78 8 269 425 123 266 4.23e-14 73.6
MS.gene035538.t1 MTR_8g102580 34.177 158 90 4 294 446 261 409 6.17e-14 75.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene035538.t1 AT4G13460 61.492 496 179 7 244 737 164 649 0.0 622
MS.gene035538.t1 AT4G13460 61.492 496 179 7 244 737 164 649 0.0 622
MS.gene035538.t1 AT2G33290 59.252 481 186 5 258 737 179 650 0.0 594
MS.gene035538.t1 AT2G33290 59.252 481 186 5 258 737 179 650 0.0 594
MS.gene035538.t1 AT2G33290 59.252 481 186 5 258 737 179 650 0.0 594
MS.gene035538.t1 AT2G33290 59.252 481 186 5 258 737 179 650 0.0 594
MS.gene035538.t1 AT2G35160 37.660 470 249 10 259 724 298 727 8.54e-91 300
MS.gene035538.t1 AT5G04940 39.262 461 233 14 286 726 207 640 2.14e-90 297
MS.gene035538.t1 AT5G04940 39.262 461 233 14 286 726 207 640 2.14e-90 297
MS.gene035538.t1 AT2G35160 37.660 470 249 10 259 724 334 763 2.84e-90 300
MS.gene035538.t1 AT2G35160 37.660 470 249 10 259 724 334 763 2.84e-90 300
MS.gene035538.t1 AT2G35160 37.660 470 249 10 259 724 334 763 2.84e-90 300
MS.gene035538.t1 AT2G35160 37.660 470 249 10 259 724 334 763 2.84e-90 300
MS.gene035538.t1 AT1G73100 37.391 460 245 12 286 726 204 639 3.74e-90 296
MS.gene035538.t1 AT2G22740 37.053 475 276 8 259 724 299 759 1.01e-88 296
MS.gene035538.t1 AT2G22740 37.053 475 276 8 259 724 299 759 1.01e-88 296
MS.gene035538.t1 AT5G13960 36.087 460 264 14 286 725 11 460 2.03e-81 268
MS.gene035538.t1 AT5G13960 35.870 460 265 14 286 725 145 594 2.60e-81 271
MS.gene035538.t1 AT2G24740 36.784 454 237 17 287 726 307 724 7.29e-69 241
MS.gene035538.t1 AT1G17770 33.406 461 265 15 286 726 223 661 2.01e-68 238
MS.gene035538.t1 AT5G47150 42.424 165 86 4 282 446 169 324 8.09e-27 112
MS.gene035538.t1 AT5G47160 40.588 170 91 5 274 442 247 407 2.01e-23 103
MS.gene035538.t1 AT5G47160 40.588 170 91 5 274 442 247 407 2.01e-23 103
MS.gene035538.t1 AT5G47160 40.588 170 91 5 274 442 247 407 2.01e-23 103
MS.gene035538.t1 AT2G23740 32.308 195 109 6 543 729 1184 1363 5.33e-22 102
MS.gene035538.t1 AT2G23740 32.308 195 109 6 543 729 1184 1363 5.33e-22 102
MS.gene035538.t1 AT2G23740 32.308 195 109 6 543 729 1184 1363 5.33e-22 102
MS.gene035538.t1 AT2G23740 32.308 195 109 6 543 729 1177 1356 5.60e-22 102
MS.gene035538.t1 AT2G05900 36.364 198 115 7 309 504 3 191 3.78e-21 95.5
MS.gene035538.t1 AT3G03750 28.521 284 145 12 474 725 66 323 2.55e-18 87.8
MS.gene035538.t1 AT2G23740 32.877 146 78 5 543 683 1184 1314 4.08e-16 83.6
MS.gene035538.t1 AT2G23740 32.877 146 78 5 543 683 1184 1314 4.08e-16 83.6
MS.gene035538.t1 AT1G57820 34.591 159 89 5 294 446 277 426 4.38e-14 76.3
MS.gene035538.t1 AT1G57820 34.591 159 89 5 294 446 277 426 4.38e-14 76.3
MS.gene035538.t1 AT1G57820 33.974 156 91 5 294 446 277 423 4.94e-13 73.2
MS.gene035538.t1 AT1G66050 32.075 159 93 4 294 446 262 411 5.32e-12 69.7
MS.gene035538.t1 AT1G66040 32.075 159 93 4 294 446 262 411 5.65e-12 69.7
MS.gene035538.t1 AT5G39550 33.333 159 91 5 294 446 262 411 7.72e-12 69.3

Find 197 sgRNAs with CRISPR-Local

Find 237 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTAGGGAGATTAAGAAAAT+TGG 0.151275 1.4:+39018697 MS.gene035538:CDS
TCCTCAAAAGGTTTAGGTTT+TGG 0.199470 1.4:-39017395 None:intergenic
AAGCGGTGCTCCGGTGTAAA+TGG 0.221260 1.4:-39017357 None:intergenic
TGATTCTTGTTTCTTTGAAA+TGG 0.265370 1.4:-39017732 None:intergenic
TGTTTCTGAAGTTGCGATTA+TGG 0.271621 1.4:+39018006 MS.gene035538:CDS
TACGTCTTTGGATCTTATTC+AGG 0.280560 1.4:+39019116 MS.gene035538:CDS
AAGCAAACCCTGAAGATTAT+AGG 0.291078 1.4:-39018959 None:intergenic
AAGAAATCCTCAAAAGGTTT+AGG 0.291529 1.4:-39017401 None:intergenic
AATTATTGAGGAGAAGAAAT+TGG 0.298748 1.4:+39017913 MS.gene035538:CDS
AGAGTTTCCCTATAATCTTC+AGG 0.299770 1.4:+39018951 MS.gene035538:CDS
GGTAGCTATGGTTAAGAAAA+AGG 0.309499 1.4:+39017763 MS.gene035538:CDS
TATGGTTGCATCGCGATAAA+AGG 0.310327 1.4:+39018167 MS.gene035538:CDS
CATCTATCTATAAACCGTTT+TGG 0.314837 1.4:-39019228 None:intergenic
AGCTTGCCCGCCCACTCGTC+AGG 0.315436 1.4:-39019507 None:intergenic
TGCAACACGATTCCGACAAT+TGG 0.331483 1.4:-39019034 None:intergenic
CAGGTCTGCGCAAACTGGTT+GGG 0.335408 1.4:+39019089 MS.gene035538:CDS
ATACATTTGGACTCCAACTA+TGG 0.339033 1.4:-39019374 None:intergenic
TTGGGAGGACAAGAGCAAAA+AGG 0.339571 1.4:-39019015 None:intergenic
GGTGTAAATGGGAGTGATTT+GGG 0.344967 1.4:-39017345 None:intergenic
AGAGGCAGCAACAGGGGTGG+AGG 0.348478 1.4:+39018063 MS.gene035538:CDS
CGGTGTAAATGGGAGTGATT+TGG 0.348980 1.4:-39017346 None:intergenic
ATGTGGTTATGAGGATGATA+TGG 0.351380 1.4:+39018351 MS.gene035538:CDS
TATATAGGATTACTGATTGC+TGG 0.364491 1.4:+39018581 MS.gene035538:CDS
ACCTGATATAGATTATTCTA+TGG 0.365689 1.4:+39019314 MS.gene035538:CDS
AGCAAACCCTGAAGATTATA+GGG 0.370075 1.4:-39018958 None:intergenic
CAAAACGGTTTATAGATAGA+TGG 0.370356 1.4:+39019229 MS.gene035538:CDS
ACAAATTGAACAAATACATT+TGG 0.370419 1.4:-39019387 None:intergenic
CCCGGTATACTCGCAGATAA+AGG 0.370510 1.4:-39019145 None:intergenic
ATGTTTATGATGGATTATAT+AGG 0.373190 1.4:+39018566 MS.gene035538:CDS
TCCATAGAATAATCTATATC+AGG 0.373576 1.4:-39019315 None:intergenic
GGCAGCAACAGGGGTGGAGG+GGG 0.379343 1.4:+39018066 MS.gene035538:CDS
ATGGTGGAATTATGTGTAAT+TGG 0.382160 1.4:+39018238 MS.gene035538:CDS
TATAGATAGATGGGCAGAAT+GGG 0.382516 1.4:+39019239 MS.gene035538:CDS
AGGCAGCAACAGGGGTGGAG+GGG 0.384511 1.4:+39018065 MS.gene035538:CDS
ATGTCATTAAATAGCCTAAC+AGG 0.384989 1.4:-39018781 None:intergenic
GATTCTTGTTTCTTTGAAAT+GGG 0.385503 1.4:-39017731 None:intergenic
CTAGGGAGATTAAGAAAATT+GGG 0.390286 1.4:+39018698 MS.gene035538:CDS
TGGTTGGGGAGTTACGTCTT+TGG 0.391653 1.4:+39019104 MS.gene035538:CDS
AACATGGAAGAGGCAGCAAC+AGG 0.393510 1.4:+39018055 MS.gene035538:CDS
TGGGAGTGATTTGGGGATTG+AGG 0.396090 1.4:-39017337 None:intergenic
AGCATAGGTTGGAAGTGTTC+AGG 0.397659 1.4:+39019070 MS.gene035538:CDS
ATCATAGTCGTGGTTTCATA+AGG 0.402492 1.4:+39018116 MS.gene035538:CDS
TCGGAATCGTGTTGCACAAA+AGG 0.405257 1.4:+39019041 MS.gene035538:CDS
GCTCTTGTCCTCCCAATTGT+CGG 0.405346 1.4:+39019022 MS.gene035538:CDS
GCATTACGGGATCGAGATTA+GGG 0.408510 1.4:+39018492 MS.gene035538:CDS
GGGAGTGATTTGGGGATTGA+GGG 0.409415 1.4:-39017336 None:intergenic
GGTAAGGTTTATGTTTATGA+TGG 0.410667 1.4:+39018556 MS.gene035538:CDS
CGCGATGCAACCATAACTTT+CGG 0.415089 1.4:-39018159 None:intergenic
TCAACATTGCGAAATGTTGC+TGG 0.416135 1.4:+39019342 MS.gene035538:CDS
GCTTGTGAAAGGGAAGCCTT+TGG 0.419411 1.4:+39018978 MS.gene035538:CDS
AAAATGATAAAGGGATTTAT+CGG 0.421885 1.4:-39017573 None:intergenic
TGCATTACGGGATCGAGATT+AGG 0.423214 1.4:+39018491 MS.gene035538:CDS
GGCAGTGAAGAGATTGGTTG+AGG 0.423218 1.4:+39017955 MS.gene035538:CDS
TTATGAGGATGATATGGAAT+TGG 0.423427 1.4:+39018357 MS.gene035538:CDS
AGAGGGTGGAAACCTTGCTT+TGG 0.427528 1.4:+39018459 MS.gene035538:CDS
TGAAGCGGCAAAAGCATTGT+TGG 0.430143 1.4:-39017612 None:intergenic
AATTGAGGGGCAAGCTAAGA+TGG 0.435322 1.4:+39018654 MS.gene035538:CDS
TATAAGTTATTGAGAATTGA+GGG 0.436671 1.4:+39018640 MS.gene035538:CDS
CGGAATCGTGTTGCACAAAA+GGG 0.437967 1.4:+39019042 MS.gene035538:CDS
GCCTTTATCTGCGAGTATAC+CGG 0.438710 1.4:+39019144 MS.gene035538:CDS
GATTGTTTCATGTGGTTATG+AGG 0.449177 1.4:+39018342 MS.gene035538:CDS
CCTTTATCTGCGAGTATACC+GGG 0.450373 1.4:+39019145 MS.gene035538:CDS
AGAGAACTCAGCATAGACTA+TGG 0.455539 1.4:+39019480 MS.gene035538:CDS
TTGGAGCGTAGTATGCATTA+CGG 0.455982 1.4:+39018478 MS.gene035538:CDS
GAGGCAGCAACAGGGGTGGA+GGG 0.460541 1.4:+39018064 MS.gene035538:CDS
TGGTTTGAAGAAGGGATGTC+TGG 0.461289 1.4:+39018601 MS.gene035538:CDS
TCAGGTATTAATTGATATGA+TGG 0.462483 1.4:-39019297 None:intergenic
GAGTTTCCCTATAATCTTCA+GGG 0.462595 1.4:+39018952 MS.gene035538:CDS
ATTGGTTGAGGAGAAGATGT+TGG 0.463349 1.4:+39017967 MS.gene035538:CDS
TGAAGTTGCGATTATGGAGA+TGG 0.466700 1.4:+39018012 MS.gene035538:CDS
AATCAACCTCATTTCCCTCC+TGG 0.471602 1.4:+39017479 MS.gene035538:CDS
ACAATCACACTAGTAGCAAT+TGG 0.471909 1.4:-39018325 None:intergenic
ACTGATTGCTGGTTTGAAGA+AGG 0.473748 1.4:+39018592 MS.gene035538:CDS
CATCGCGATAAAAGGATAGT+TGG 0.475915 1.4:+39018175 MS.gene035538:CDS
AGAGGGAGAATGTTCCTGTT+AGG 0.476652 1.4:+39018767 MS.gene035538:CDS
AGAAGATGTTGGATGAGGAT+AGG 0.479328 1.4:+39017978 MS.gene035538:CDS
TCAGGTCTGCGCAAACTGGT+TGG 0.479909 1.4:+39019088 MS.gene035538:CDS
AGTAGCAATTGGCTCGCCAT+TGG 0.481657 1.4:-39018314 None:intergenic
TAATGAAGGACCGAAAGTTA+TGG 0.481674 1.4:+39018149 MS.gene035538:CDS
CTTCAGGGTTTGCTTGTGAA+AGG 0.482699 1.4:+39018967 MS.gene035538:CDS
TCAGTCAATATTTCCGACCT+TGG 0.482765 1.4:+39017644 MS.gene035538:CDS
AGGTCTGCGCAAACTGGTTG+GGG 0.482929 1.4:+39019090 MS.gene035538:CDS
TGGAGCGTAGTATGCATTAC+GGG 0.484208 1.4:+39018479 MS.gene035538:CDS
CATCAGAGCGGGAAAGCTAC+TGG 0.485001 1.4:+39018871 MS.gene035538:CDS
GCAACACGATTCCGACAATT+GGG 0.485278 1.4:-39019033 None:intergenic
TGCGATTATGGAGATGGAGA+TGG 0.487265 1.4:+39018018 MS.gene035538:CDS
GTATAAGTTATTGAGAATTG+AGG 0.488542 1.4:+39018639 MS.gene035538:CDS
TCTTTGGATCTTATTCAGGC+TGG 0.491337 1.4:+39019120 MS.gene035538:CDS
GTGTTCAGGTCTGCGCAAAC+TGG 0.491340 1.4:+39019084 MS.gene035538:CDS
GGATGAGAAAAGAATTATTG+AGG 0.492648 1.4:+39017901 MS.gene035538:CDS
GGAGATTAAGAAAATTGGGT+TGG 0.494139 1.4:+39018702 MS.gene035538:CDS
TGTGGAGGCAGTGAAGAGAT+TGG 0.494725 1.4:+39017949 MS.gene035538:CDS
AATTCTTCTTTCTTCCTCCA+TGG 0.496188 1.4:-39018408 None:intergenic
AGCGGTGCTCCGGTGTAAAT+GGG 0.497581 1.4:-39017356 None:intergenic
ATCATGTTCGGCGGTAGCTA+TGG 0.497855 1.4:+39017751 MS.gene035538:CDS
AAACAACCTCATTTCCCTCA+TGG 0.500206 1.4:+39017443 MS.gene035538:CDS
AAAGAAACAAGAATCATGTT+CGG 0.500992 1.4:+39017739 MS.gene035538:CDS
GGATTTATCGGAAGTAGCAT+TGG 0.502335 1.4:-39017561 None:intergenic
TTCAGGGTTTGCTTGTGAAA+GGG 0.502624 1.4:+39018968 MS.gene035538:CDS
TATGGTTTGAAGCGGTGCTC+CGG 0.502918 1.4:-39017366 None:intergenic
CTTCTTTCTTCCTCCATGGC+CGG 0.504486 1.4:-39018404 None:intergenic
CTGATTGCTGGTTTGAAGAA+GGG 0.504895 1.4:+39018593 MS.gene035538:CDS
GGAAGATACTCATAATAAAG+AGG 0.506268 1.4:-39018820 None:intergenic
TGTGTGGAGGCTTGTACTGA+TGG 0.507598 1.4:+39018901 MS.gene035538:CDS
TAGATAGATGGGCAGAATGG+GGG 0.511424 1.4:+39019241 MS.gene035538:CDS
AGGATAGTTGGATCGATACC+TGG 0.518534 1.4:+39018187 MS.gene035538:CDS
GGCATCCCTGACGAGTGGGC+GGG 0.520972 1.4:+39019501 MS.gene035538:CDS
TTCGTGAGATGAAGTATGAA+GGG 0.522262 1.4:+39018518 MS.gene035538:CDS
ACTCGTTAATATATCCAAAA+CGG 0.524396 1.4:+39019214 MS.gene035538:CDS
GAGGATTTCTTCACCACCCA+AGG 0.525934 1.4:+39017413 MS.gene035538:CDS
TAGGGTTCTGATTTAGTCCA+AGG 0.527023 1.4:-39017661 None:intergenic
GCGATTATGGAGATGGAGAT+GGG 0.528244 1.4:+39018019 MS.gene035538:CDS
TCATAGTCGTGGTTTCATAA+GGG 0.531523 1.4:+39018117 MS.gene035538:CDS
ATGGAGATGGAGATGGGAGC+TGG 0.532864 1.4:+39018025 MS.gene035538:CDS
TTATAGATAGATGGGCAGAA+TGG 0.533260 1.4:+39019238 MS.gene035538:CDS
GTAATAATCAATACCGGCCA+TGG 0.534042 1.4:+39018391 MS.gene035538:CDS
AGATAGATGGGCAGAATGGG+GGG 0.535500 1.4:+39019242 MS.gene035538:CDS
AAAACGGTTTATAGATAGAT+GGG 0.536629 1.4:+39019230 MS.gene035538:CDS
TCGATACCTGGAGTTTATGT+TGG 0.538082 1.4:+39018199 MS.gene035538:CDS
CTGGCTATATGAGCCATAGT+TGG 0.538666 1.4:+39019361 MS.gene035538:CDS
GGTTTGTGGTTCATCAGAGC+GGG 0.543952 1.4:+39018860 MS.gene035538:CDS
TTATGATTCGCTACGTGTGT+TGG 0.545706 1.4:+39017868 MS.gene035538:CDS
GTGGTGAAGAAATCCTCAAA+AGG 0.546407 1.4:-39017407 None:intergenic
AATTTGTGATCAGAAATTAG+AGG 0.546612 1.4:+39018441 MS.gene035538:CDS
GACTGAGTTCTCCATTGAAG+CGG 0.547564 1.4:-39017627 None:intergenic
AAAGGGGATCAAGCATAGGT+TGG 0.547811 1.4:+39019059 MS.gene035538:CDS
GATGATATGGAATTGGATGA+TGG 0.549294 1.4:+39018364 MS.gene035538:CDS
GGTGATGTAATAATCAATAC+CGG 0.550208 1.4:+39018385 MS.gene035538:CDS
ATTCGTGAGATGAAGTATGA+AGG 0.550982 1.4:+39018517 MS.gene035538:CDS
CCGTCTCATGCTATATGCAA+TGG 0.560658 1.4:+39019440 MS.gene035538:CDS
TGTTGATATTTCACACAAGA+GGG 0.562610 1.4:+39018750 MS.gene035538:CDS
AGGCAAGTCAGATGCTTGTG+AGG 0.562686 1.4:+39017783 MS.gene035538:CDS
TGGTGATGAGAACATGGAAG+AGG 0.565897 1.4:+39018045 MS.gene035538:CDS
GGGTGCGTCTAGCTCTGGTA+AGG 0.568302 1.4:+39018540 MS.gene035538:CDS
TGGCATCCCTGACGAGTGGG+CGG 0.569853 1.4:+39019500 MS.gene035538:CDS
CTGTTGATATTTCACACAAG+AGG 0.573952 1.4:+39018749 MS.gene035538:CDS
CATTGCATATAGCATGAGAC+GGG 0.574005 1.4:-39019439 None:intergenic
ATAGATAGATGGGCAGAATG+GGG 0.576328 1.4:+39019240 MS.gene035538:CDS
AAGGGCTGCGAGGTTAATGA+AGG 0.576510 1.4:+39018135 MS.gene035538:CDS
GGTTTCAGATCTGAGTATGA+AGG 0.579176 1.4:+39017805 MS.gene035538:CDS
ATTTGTGATCAGAAATTAGA+GGG 0.579266 1.4:+39018442 MS.gene035538:CDS
GCTTGCCCGCCCACTCGTCA+GGG 0.582498 1.4:-39019506 None:intergenic
GCATACTACGCTCCAAAGCA+AGG 0.582921 1.4:-39018471 None:intergenic
TGCTGAGTTCTCTCAATGGA+GGG 0.584149 1.4:-39019470 None:intergenic
GTGTAAATGGGAGTGATTTG+GGG 0.585866 1.4:-39017344 None:intergenic
TTCCCTTGTTAAAATTACCC+CGG 0.586982 1.4:-39019163 None:intergenic
ATTGAGGGGCAAGCTAAGAT+GGG 0.587188 1.4:+39018655 MS.gene035538:CDS
ACATCGCCAACATAAACTCC+AGG 0.587833 1.4:-39018205 None:intergenic
CCATTGCATATAGCATGAGA+CGG 0.588288 1.4:-39019440 None:intergenic
TCATATCCAGGAGGGAAATG+AGG 0.588395 1.4:-39017485 None:intergenic
GGGACGAGTATGGTTTGAAG+CGG 0.590830 1.4:-39017374 None:intergenic
GGAAGAGGCAGCAACAGGGG+TGG 0.591867 1.4:+39018060 MS.gene035538:CDS
ACTAAATCAGAACCCTAACA+TGG 0.593938 1.4:+39017667 MS.gene035538:CDS
CTCTGATGAACCACAAACCA+CGG 0.596324 1.4:-39018856 None:intergenic
ACTAGTGTGATTGTTTCATG+TGG 0.597219 1.4:+39018334 MS.gene035538:CDS
TCATATCCATGAGGGAAATG+AGG 0.597266 1.4:-39017449 None:intergenic
AGCTACTGGTTGTGAATGTG+TGG 0.598292 1.4:+39018885 MS.gene035538:CDS
GGCAAGTCAGATGCTTGTGA+GGG 0.598305 1.4:+39017784 MS.gene035538:CDS
CATGGAAGAGGCAGCAACAG+GGG 0.601065 1.4:+39018057 MS.gene035538:CDS
TCAACAGAAAGACAATACAT+AGG 0.601273 1.4:-39018733 None:intergenic
TGTTGTAGTACTCAGTGTAG+AGG 0.601469 1.4:-39017526 None:intergenic
ATGCTGAGTTCTCTCAATGG+AGG 0.603033 1.4:-39019471 None:intergenic
GGGAGCTGGTGATGAGAACA+TGG 0.604987 1.4:+39018039 MS.gene035538:CDS
TGAGGAGAAGATGTTGGATG+AGG 0.605221 1.4:+39017973 MS.gene035538:CDS
TCTATGCTGAGTTCTCTCAA+TGG 0.607917 1.4:-39019474 None:intergenic
TTGCATATGCAGATACAAGA+TGG 0.611206 1.4:+39018262 MS.gene035538:CDS
AGATGCATCGCAACATGATG+AGG 0.612112 1.4:+39017831 MS.gene035538:CDS
GAAGTAGCATTGGAAGATTG+TGG 0.615801 1.4:-39017551 None:intergenic
GTTCTGATTTAGTCCAAGGT+CGG 0.618069 1.4:-39017657 None:intergenic
CTATGGCATCCCTGACGAGT+GGG 0.626017 1.4:+39019497 MS.gene035538:CDS
GCAACATGATGAGGAGAACA+AGG 0.627298 1.4:+39017840 MS.gene035538:CDS
ACGTGTGTTGGAAAGTATTG+AGG 0.633669 1.4:+39017880 MS.gene035538:CDS
ACATGGAAGAGGCAGCAACA+GGG 0.638672 1.4:+39018056 MS.gene035538:CDS
TGTGATCAGAAATTAGAGGG+TGG 0.640509 1.4:+39018445 MS.gene035538:CDS
AGACATCATAATCATAGTCG+TGG 0.641416 1.4:+39018106 MS.gene035538:CDS
CACAAAAGGGGATCAAGCAT+AGG 0.642092 1.4:+39019055 MS.gene035538:CDS
TACTGGTTGTGAATGTGTGG+AGG 0.644458 1.4:+39018888 MS.gene035538:CDS
ATAAGTTATTGAGAATTGAG+GGG 0.645000 1.4:+39018641 MS.gene035538:CDS
CAAATCACTCCCATTTACAC+CGG 0.645622 1.4:+39017347 MS.gene035538:CDS
CTAAATCAGAACCCTAACAT+GGG 0.650681 1.4:+39017668 MS.gene035538:CDS
ACTATGGCATCCCTGACGAG+TGG 0.651275 1.4:+39019496 MS.gene035538:CDS
ACACGATTCCGACAATTGGG+AGG 0.651351 1.4:-39019030 None:intergenic
TCGTGAGATGAAGTATGAAG+GGG 0.657054 1.4:+39018519 MS.gene035538:CDS
TGGTTTGTGGTTCATCAGAG+CGG 0.658060 1.4:+39018859 MS.gene035538:CDS
CCTAAAAGTAGGTCTTCCAA+TGG 0.661785 1.4:+39018298 MS.gene035538:CDS
TAAATCAGAACCCTAACATG+GGG 0.662393 1.4:+39017669 MS.gene035538:CDS
GGAATCGTGTTGCACAAAAG+GGG 0.665750 1.4:+39019043 MS.gene035538:CDS
TGTTGTGTTCATATCCATGA+GGG 0.680837 1.4:-39017457 None:intergenic
GAAACAAGAATCATGTTCGG+CGG 0.682834 1.4:+39017742 MS.gene035538:CDS
CGTGAGATGAAGTATGAAGG+GGG 0.704890 1.4:+39018520 MS.gene035538:CDS
CTTTATCTGCGAGTATACCG+GGG 0.705407 1.4:+39019146 MS.gene035538:CDS
ATAATCAATACCGGCCATGG+AGG 0.709610 1.4:+39018394 MS.gene035538:CDS
GTGGTTTCATAAGGGCTGCG+AGG 0.711383 1.4:+39018125 MS.gene035538:CDS
ATTGCATATAGCATGAGACG+GGG 0.721884 1.4:-39019438 None:intergenic
TTGCATATAGCATGAGACGG+GGG 0.722787 1.4:-39019437 None:intergenic
TTGTTGTGTTCATATCCATG+AGG 0.736385 1.4:-39017458 None:intergenic
AAATCAGAACCCTAACATGG+GGG 0.770325 1.4:+39017670 MS.gene035538:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATGATAAAGGGATTTAT+CGG - chr1.4:39017576-39017595 None:intergenic 20.0%
!! ACAAATTGAACAAATACATT+TGG - chr1.4:39019390-39019409 None:intergenic 20.0%
!! TATAAGTTATTGAGAATTGA+GGG + chr1.4:39018640-39018659 MS.gene035538:CDS 20.0%
!!! ATGTTTATGATGGATTATAT+AGG + chr1.4:39018566-39018585 MS.gene035538:CDS 20.0%
!!! GATTTTGAGAAAATGATAAA+GGG - chr1.4:39017585-39017604 None:intergenic 20.0%
! AAAACGGTTTATAGATAGAT+GGG + chr1.4:39019230-39019249 MS.gene035538:CDS 25.0%
! AAAGAAACAAGAATCATGTT+CGG + chr1.4:39017739-39017758 MS.gene035538:CDS 25.0%
! AATTATTGAGGAGAAGAAAT+TGG + chr1.4:39017913-39017932 MS.gene035538:CDS 25.0%
! AATTTGTGATCAGAAATTAG+AGG + chr1.4:39018441-39018460 MS.gene035538:CDS 25.0%
! ACCTGATATAGATTATTCTA+TGG + chr1.4:39019314-39019333 MS.gene035538:CDS 25.0%
! ACTCGTTAATATATCCAAAA+CGG + chr1.4:39019214-39019233 MS.gene035538:CDS 25.0%
! ATAAGTTATTGAGAATTGAG+GGG + chr1.4:39018641-39018660 MS.gene035538:CDS 25.0%
! ATTTGTGATCAGAAATTAGA+GGG + chr1.4:39018442-39018461 MS.gene035538:CDS 25.0%
! GTATAAGTTATTGAGAATTG+AGG + chr1.4:39018639-39018658 MS.gene035538:CDS 25.0%
! TCAGGTATTAATTGATATGA+TGG - chr1.4:39019300-39019319 None:intergenic 25.0%
! TCCATAGAATAATCTATATC+AGG - chr1.4:39019318-39019337 None:intergenic 25.0%
!! TGATTCTTGTTTCTTTGAAA+TGG - chr1.4:39017735-39017754 None:intergenic 25.0%
!! TTGATTTTCTTCCTAAAAGT+AGG + chr1.4:39018287-39018306 MS.gene035538:CDS 25.0%
!!! CGATTTTGAGAAAATGATAA+AGG - chr1.4:39017586-39017605 None:intergenic 25.0%
!!! GATTCTTGTTTCTTTGAAAT+GGG - chr1.4:39017734-39017753 None:intergenic 25.0%
!!! GCTCAAATTTTAACAATGAA+TGG + chr1.4:39019189-39019208 MS.gene035538:CDS 25.0%
AAGAAATCCTCAAAAGGTTT+AGG - chr1.4:39017404-39017423 None:intergenic 30.0%
ATGTCATTAAATAGCCTAAC+AGG - chr1.4:39018784-39018803 None:intergenic 30.0%
CAAAACGGTTTATAGATAGA+TGG + chr1.4:39019229-39019248 MS.gene035538:CDS 30.0%
CTAGGGAGATTAAGAAAATT+GGG + chr1.4:39018698-39018717 MS.gene035538:CDS 30.0%
GGAAGATACTCATAATAAAG+AGG - chr1.4:39018823-39018842 None:intergenic 30.0%
GGATGAGAAAAGAATTATTG+AGG + chr1.4:39017901-39017920 MS.gene035538:CDS 30.0%
GGTAAGGTTTATGTTTATGA+TGG + chr1.4:39018556-39018575 MS.gene035538:CDS 30.0%
GGTGATGTAATAATCAATAC+CGG + chr1.4:39018385-39018404 MS.gene035538:CDS 30.0%
TCAACAGAAAGACAATACAT+AGG - chr1.4:39018736-39018755 None:intergenic 30.0%
TGTTGATATTTCACACAAGA+GGG + chr1.4:39018750-39018769 MS.gene035538:CDS 30.0%
TTATGAGGATGATATGGAAT+TGG + chr1.4:39018357-39018376 MS.gene035538:CDS 30.0%
! ATGGTGGAATTATGTGTAAT+TGG + chr1.4:39018238-39018257 MS.gene035538:CDS 30.0%
! CATCTATCTATAAACCGTTT+TGG - chr1.4:39019231-39019250 None:intergenic 30.0%
! TATATAGGATTACTGATTGC+TGG + chr1.4:39018581-39018600 MS.gene035538:CDS 30.0%
! TGATTTTTGTGTTCATATCC+AGG - chr1.4:39017500-39017519 None:intergenic 30.0%
!! TGTTGTTCTAAAAAAGGCTA+GGG + chr1.4:39018681-39018700 MS.gene035538:CDS 30.0%
AAGCAAACCCTGAAGATTAT+AGG - chr1.4:39018962-39018981 None:intergenic 35.0%
AATTCTTCTTTCTTCCTCCA+TGG - chr1.4:39018411-39018430 None:intergenic 35.0%
ACAATCACACTAGTAGCAAT+TGG - chr1.4:39018328-39018347 None:intergenic 35.0%
ACTAAATCAGAACCCTAACA+TGG + chr1.4:39017667-39017686 MS.gene035538:CDS 35.0%
ACTAGTGTGATTGTTTCATG+TGG + chr1.4:39018334-39018353 MS.gene035538:CDS 35.0%
AGACATCATAATCATAGTCG+TGG + chr1.4:39018106-39018125 MS.gene035538:CDS 35.0%
AGAGTTTCCCTATAATCTTC+AGG + chr1.4:39018951-39018970 MS.gene035538:CDS 35.0%
AGCAAACCCTGAAGATTATA+GGG - chr1.4:39018961-39018980 None:intergenic 35.0%
ATACATTTGGACTCCAACTA+TGG - chr1.4:39019377-39019396 None:intergenic 35.0%
ATCATAGTCGTGGTTTCATA+AGG + chr1.4:39018116-39018135 MS.gene035538:CDS 35.0%
ATGTGGTTATGAGGATGATA+TGG + chr1.4:39018351-39018370 MS.gene035538:CDS 35.0%
ATTCGTGAGATGAAGTATGA+AGG + chr1.4:39018517-39018536 MS.gene035538:CDS 35.0%
CTAAATCAGAACCCTAACAT+GGG + chr1.4:39017668-39017687 MS.gene035538:CDS 35.0%
CTGTTGATATTTCACACAAG+AGG + chr1.4:39018749-39018768 MS.gene035538:CDS 35.0%
GAGTTTCCCTATAATCTTCA+GGG + chr1.4:39018952-39018971 MS.gene035538:CDS 35.0%
GATGATATGGAATTGGATGA+TGG + chr1.4:39018364-39018383 MS.gene035538:CDS 35.0%
GATTGTTTCATGTGGTTATG+AGG + chr1.4:39018342-39018361 MS.gene035538:CDS 35.0%
GCTAGGGAGATTAAGAAAAT+TGG + chr1.4:39018697-39018716 MS.gene035538:CDS 35.0%
GGAGATTAAGAAAATTGGGT+TGG + chr1.4:39018702-39018721 MS.gene035538:CDS 35.0%
GGTAGCTATGGTTAAGAAAA+AGG + chr1.4:39017763-39017782 MS.gene035538:CDS 35.0%
TAAATCAGAACCCTAACATG+GGG + chr1.4:39017669-39017688 MS.gene035538:CDS 35.0%
TAATGAAGGACCGAAAGTTA+TGG + chr1.4:39018149-39018168 MS.gene035538:CDS 35.0%
TACGTCTTTGGATCTTATTC+AGG + chr1.4:39019116-39019135 MS.gene035538:CDS 35.0%
TATAGATAGATGGGCAGAAT+GGG + chr1.4:39019239-39019258 MS.gene035538:CDS 35.0%
TCATAGTCGTGGTTTCATAA+GGG + chr1.4:39018117-39018136 MS.gene035538:CDS 35.0%
TGTTGTGTTCATATCCATGA+GGG - chr1.4:39017460-39017479 None:intergenic 35.0%
TTATAGATAGATGGGCAGAA+TGG + chr1.4:39019238-39019257 MS.gene035538:CDS 35.0%
TTCCCTTGTTAAAATTACCC+CGG - chr1.4:39019166-39019185 None:intergenic 35.0%
TTCGTGAGATGAAGTATGAA+GGG + chr1.4:39018518-39018537 MS.gene035538:CDS 35.0%
TTGCATATGCAGATACAAGA+TGG + chr1.4:39018262-39018281 MS.gene035538:CDS 35.0%
TTGTTGTGTTCATATCCATG+AGG - chr1.4:39017461-39017480 None:intergenic 35.0%
! AACCACGGAAAAGTAGTTTT+CGG - chr1.4:39018844-39018863 None:intergenic 35.0%
! ATTGGCTGATGAAGTTTTTG+TGG + chr1.4:39017931-39017950 MS.gene035538:CDS 35.0%
! CGATGTTTTCTTGTATATGG+TGG + chr1.4:39018222-39018241 MS.gene035538:CDS 35.0%
! TGCTTTTGCTCTATGAAGAA+TGG + chr1.4:39018925-39018944 MS.gene035538:CDS 35.0%
! TGGCGATGTTTTCTTGTATA+TGG + chr1.4:39018219-39018238 MS.gene035538:CDS 35.0%
! TTTTGCTCTATGAAGAATGG+AGG + chr1.4:39018928-39018947 MS.gene035538:CDS 35.0%
! TTTTGTGTTCATATCCAGGA+GGG - chr1.4:39017496-39017515 None:intergenic 35.0%
! TTTTTGTGTTCATATCCAGG+AGG - chr1.4:39017497-39017516 None:intergenic 35.0%
!! ATACCGGGGTAATTTTAACA+AGG + chr1.4:39019160-39019179 MS.gene035538:CDS 35.0%
!! CCTCAAAAGGTTTAGGTTTT+GGG - chr1.4:39017397-39017416 None:intergenic 35.0%
!! GGGTAGTGTTGTTCTAAAAA+AGG + chr1.4:39018675-39018694 MS.gene035538:CDS 35.0%
!! GTGTTGTTCTAAAAAAGGCT+AGG + chr1.4:39018680-39018699 MS.gene035538:CDS 35.0%
!! TACCGGGGTAATTTTAACAA+GGG + chr1.4:39019161-39019180 MS.gene035538:CDS 35.0%
!! TCCTCAAAAGGTTTAGGTTT+TGG - chr1.4:39017398-39017417 None:intergenic 35.0%
!! TGTTTCTGAAGTTGCGATTA+TGG + chr1.4:39018006-39018025 MS.gene035538:CDS 35.0%
!!! AAGCCTTTGGTTTTTGAATG+TGG + chr1.4:39018991-39019010 MS.gene035538:CDS 35.0%
!!! AGGGAAATGAGGTTGTTTTT+GGG - chr1.4:39017441-39017460 None:intergenic 35.0%
AAACAACCTCATTTCCCTCA+TGG + chr1.4:39017443-39017462 MS.gene035538:CDS 40.0%
AAATCAGAACCCTAACATGG+GGG + chr1.4:39017670-39017689 MS.gene035538:CDS 40.0%
AGAAGATGTTGGATGAGGAT+AGG + chr1.4:39017978-39017997 MS.gene035538:CDS 40.0%
AGAGAACTCAGCATAGACTA+TGG + chr1.4:39019480-39019499 MS.gene035538:CDS 40.0%
ATAGATAGATGGGCAGAATG+GGG + chr1.4:39019240-39019259 MS.gene035538:CDS 40.0%
ATTGCATATAGCATGAGACG+GGG - chr1.4:39019441-39019460 None:intergenic 40.0%
ATTGGTTGAGGAGAAGATGT+TGG + chr1.4:39017967-39017986 MS.gene035538:CDS 40.0%
CAAATCACTCCCATTTACAC+CGG + chr1.4:39017347-39017366 MS.gene035538:CDS 40.0%
CATCGCGATAAAAGGATAGT+TGG + chr1.4:39018175-39018194 MS.gene035538:CDS 40.0%
CATTGCATATAGCATGAGAC+GGG - chr1.4:39019442-39019461 None:intergenic 40.0%
CCATTGCATATAGCATGAGA+CGG - chr1.4:39019443-39019462 None:intergenic 40.0%
CCTAAAAGTAGGTCTTCCAA+TGG + chr1.4:39018298-39018317 MS.gene035538:CDS 40.0%
GAAACAAGAATCATGTTCGG+CGG + chr1.4:39017742-39017761 MS.gene035538:CDS 40.0%
GGATTTATCGGAAGTAGCAT+TGG - chr1.4:39017564-39017583 None:intergenic 40.0%
GGTGTAAATGGGAGTGATTT+GGG - chr1.4:39017348-39017367 None:intergenic 40.0%
GGTTTCAGATCTGAGTATGA+AGG + chr1.4:39017805-39017824 MS.gene035538:CDS 40.0%
GTAATAATCAATACCGGCCA+TGG + chr1.4:39018391-39018410 MS.gene035538:CDS 40.0%
GTGGTGAAGAAATCCTCAAA+AGG - chr1.4:39017410-39017429 None:intergenic 40.0%
GTGTAAATGGGAGTGATTTG+GGG - chr1.4:39017347-39017366 None:intergenic 40.0%
GTTCTGATTTAGTCCAAGGT+CGG - chr1.4:39017660-39017679 None:intergenic 40.0%
TATGGTTGCATCGCGATAAA+AGG + chr1.4:39018167-39018186 MS.gene035538:CDS 40.0%
TCAACATTGCGAAATGTTGC+TGG + chr1.4:39019342-39019361 MS.gene035538:CDS 40.0%
TCAGTCAATATTTCCGACCT+TGG + chr1.4:39017644-39017663 MS.gene035538:CDS 40.0%
TCATATCCATGAGGGAAATG+AGG - chr1.4:39017452-39017471 None:intergenic 40.0%
TCGATACCTGGAGTTTATGT+TGG + chr1.4:39018199-39018218 MS.gene035538:CDS 40.0%
TCGTGAGATGAAGTATGAAG+GGG + chr1.4:39018519-39018538 MS.gene035538:CDS 40.0%
TCTATGCTGAGTTCTCTCAA+TGG - chr1.4:39019477-39019496 None:intergenic 40.0%
TCTTTGGATCTTATTCAGGC+TGG + chr1.4:39019120-39019139 MS.gene035538:CDS 40.0%
TGAAGTTGCGATTATGGAGA+TGG + chr1.4:39018012-39018031 MS.gene035538:CDS 40.0%
TGTGATCAGAAATTAGAGGG+TGG + chr1.4:39018445-39018464 MS.gene035538:CDS 40.0%
TGTTGTAGTACTCAGTGTAG+AGG - chr1.4:39017529-39017548 None:intergenic 40.0%
TTATGATTCGCTACGTGTGT+TGG + chr1.4:39017868-39017887 MS.gene035538:CDS 40.0%
TTGGAGCGTAGTATGCATTA+CGG + chr1.4:39018478-39018497 MS.gene035538:CDS 40.0%
! CCCAAAACCTAAACCTTTTG+AGG + chr1.4:39017394-39017413 MS.gene035538:CDS 40.0%
! GAAGTAGCATTGGAAGATTG+TGG - chr1.4:39017554-39017573 None:intergenic 40.0%
! TAGGGTTCTGATTTAGTCCA+AGG - chr1.4:39017664-39017683 None:intergenic 40.0%
! TTCAGGGTTTGCTTGTGAAA+GGG + chr1.4:39018968-39018987 MS.gene035538:CDS 40.0%
!! AACTACTTTTCCGTGGTTTG+TGG + chr1.4:39018846-39018865 MS.gene035538:CDS 40.0%
!! ACGTGTGTTGGAAAGTATTG+AGG + chr1.4:39017880-39017899 MS.gene035538:CDS 40.0%
!! ACTGATTGCTGGTTTGAAGA+AGG + chr1.4:39018592-39018611 MS.gene035538:CDS 40.0%
!! CCATTGGAAGACCTACTTTT+AGG - chr1.4:39018301-39018320 None:intergenic 40.0%
!! CTGATTGCTGGTTTGAAGAA+GGG + chr1.4:39018593-39018612 MS.gene035538:CDS 40.0%
!! GAGGGAAATGAGGTTGTTTT+TGG - chr1.4:39017442-39017461 None:intergenic 40.0%
!! TTCCGAAAACTACTTTTCCG+TGG + chr1.4:39018839-39018858 MS.gene035538:CDS 40.0%
!!! AGGTTGTTTTTGGGAACCTT+GGG - chr1.4:39017432-39017451 None:intergenic 40.0%
!!! TTTAGGTTTTGGGACGAGTA+TGG - chr1.4:39017387-39017406 None:intergenic 40.0%
AAAGGGGATCAAGCATAGGT+TGG + chr1.4:39019059-39019078 MS.gene035538:CDS 45.0%
AATCAACCTCATTTCCCTCC+TGG + chr1.4:39017479-39017498 MS.gene035538:CDS 45.0%
AATTGAGGGGCAAGCTAAGA+TGG + chr1.4:39018654-39018673 MS.gene035538:CDS 45.0%
ACAAAATCCACCCCCATGTT+AGG - chr1.4:39017683-39017702 None:intergenic 45.0%
ACATCGCCAACATAAACTCC+AGG - chr1.4:39018208-39018227 None:intergenic 45.0%
AGAGGGAGAATGTTCCTGTT+AGG + chr1.4:39018767-39018786 MS.gene035538:CDS 45.0%
AGATGCATCGCAACATGATG+AGG + chr1.4:39017831-39017850 MS.gene035538:CDS 45.0%
AGGATAGTTGGATCGATACC+TGG + chr1.4:39018187-39018206 MS.gene035538:CDS 45.0%
ATAATCAATACCGGCCATGG+AGG + chr1.4:39018394-39018413 MS.gene035538:CDS 45.0%
ATGCTGAGTTCTCTCAATGG+AGG - chr1.4:39019474-39019493 None:intergenic 45.0%
ATTGAGGGGCAAGCTAAGAT+GGG + chr1.4:39018655-39018674 MS.gene035538:CDS 45.0%
CAAAATCCACCCCCATGTTA+GGG - chr1.4:39017682-39017701 None:intergenic 45.0%
CACAAAAGGGGATCAAGCAT+AGG + chr1.4:39019055-39019074 MS.gene035538:CDS 45.0%
CCGTCTCATGCTATATGCAA+TGG + chr1.4:39019440-39019459 MS.gene035538:CDS 45.0%
CCTTTATCTGCGAGTATACC+GGG + chr1.4:39019145-39019164 MS.gene035538:CDS 45.0%
CGCGATGCAACCATAACTTT+CGG - chr1.4:39018162-39018181 None:intergenic 45.0%
CGGAATCGTGTTGCACAAAA+GGG + chr1.4:39019042-39019061 MS.gene035538:CDS 45.0%
CGGTGTAAATGGGAGTGATT+TGG - chr1.4:39017349-39017368 None:intergenic 45.0%
CGTGAGATGAAGTATGAAGG+GGG + chr1.4:39018520-39018539 MS.gene035538:CDS 45.0%
CTCTGATGAACCACAAACCA+CGG - chr1.4:39018859-39018878 None:intergenic 45.0%
CTGGCTATATGAGCCATAGT+TGG + chr1.4:39019361-39019380 MS.gene035538:CDS 45.0%
CTTTATCTGCGAGTATACCG+GGG + chr1.4:39019146-39019165 MS.gene035538:CDS 45.0%
GACTGAGTTCTCCATTGAAG+CGG - chr1.4:39017630-39017649 None:intergenic 45.0%
GCAACACGATTCCGACAATT+GGG - chr1.4:39019036-39019055 None:intergenic 45.0%
GCAACATGATGAGGAGAACA+AGG + chr1.4:39017840-39017859 MS.gene035538:CDS 45.0%
GCATTACGGGATCGAGATTA+GGG + chr1.4:39018492-39018511 MS.gene035538:CDS 45.0%
GCCTTTATCTGCGAGTATAC+CGG + chr1.4:39019144-39019163 MS.gene035538:CDS 45.0%
GCGATTATGGAGATGGAGAT+GGG + chr1.4:39018019-39018038 MS.gene035538:CDS 45.0%
GGAATCGTGTTGCACAAAAG+GGG + chr1.4:39019043-39019062 MS.gene035538:CDS 45.0%
GGGCCACATTCAAAAACCAA+AGG - chr1.4:39018997-39019016 None:intergenic 45.0%
TAGATAGATGGGCAGAATGG+GGG + chr1.4:39019241-39019260 MS.gene035538:CDS 45.0%
TCATATCCAGGAGGGAAATG+AGG - chr1.4:39017488-39017507 None:intergenic 45.0%
TCGGAATCGTGTTGCACAAA+AGG + chr1.4:39019041-39019060 MS.gene035538:CDS 45.0%
TGAGGAGAAGATGTTGGATG+AGG + chr1.4:39017973-39017992 MS.gene035538:CDS 45.0%
TGCAACACGATTCCGACAAT+TGG - chr1.4:39019037-39019056 None:intergenic 45.0%
TGCATTACGGGATCGAGATT+AGG + chr1.4:39018491-39018510 MS.gene035538:CDS 45.0%
TGCGATTATGGAGATGGAGA+TGG + chr1.4:39018018-39018037 MS.gene035538:CDS 45.0%
TGCTGAGTTCTCTCAATGGA+GGG - chr1.4:39019473-39019492 None:intergenic 45.0%
TGGAGCGTAGTATGCATTAC+GGG + chr1.4:39018479-39018498 MS.gene035538:CDS 45.0%
TGGGAGGACAAGAGCAAAAA+GGG - chr1.4:39019017-39019036 None:intergenic 45.0%
TGGTTTGAAGAAGGGATGTC+TGG + chr1.4:39018601-39018620 MS.gene035538:CDS 45.0%
TTGCATATAGCATGAGACGG+GGG - chr1.4:39019440-39019459 None:intergenic 45.0%
TTGGGAGGACAAGAGCAAAA+AGG - chr1.4:39019018-39019037 None:intergenic 45.0%
! AGCTACTGGTTGTGAATGTG+TGG + chr1.4:39018885-39018904 MS.gene035538:CDS 45.0%
! CTTCAGGGTTTGCTTGTGAA+AGG + chr1.4:39018967-39018986 MS.gene035538:CDS 45.0%
! GGCTGATGAAGTTTTTGTGG+AGG + chr1.4:39017934-39017953 MS.gene035538:CDS 45.0%
! TACTGGTTGTGAATGTGTGG+AGG + chr1.4:39018888-39018907 MS.gene035538:CDS 45.0%
! TGGTGATGAGAACATGGAAG+AGG + chr1.4:39018045-39018064 MS.gene035538:CDS 45.0%
! TGGTTTGTGGTTCATCAGAG+CGG + chr1.4:39018859-39018878 MS.gene035538:CDS 45.0%
!! AGCATAGGTTGGAAGTGTTC+AGG + chr1.4:39019070-39019089 MS.gene035538:CDS 45.0%
!! CAATGCTTTTGCCGCTTCAA+TGG + chr1.4:39017616-39017635 MS.gene035538:CDS 45.0%
!! TAACATGGGGGTGGATTTTG+TGG + chr1.4:39017682-39017701 MS.gene035538:CDS 45.0%
!! TGAAGCGGCAAAAGCATTGT+TGG - chr1.4:39017615-39017634 None:intergenic 45.0%
!!! GAGGTTGTTTTTGGGAACCT+TGG - chr1.4:39017433-39017452 None:intergenic 45.0%
!!! TTGTTTTTGGGAACCTTGGG+TGG - chr1.4:39017429-39017448 None:intergenic 45.0%
AACATGGAAGAGGCAGCAAC+AGG + chr1.4:39018055-39018074 MS.gene035538:CDS 50.0%
AAGGGCTGCGAGGTTAATGA+AGG + chr1.4:39018135-39018154 MS.gene035538:CDS 50.0%
ACACGATTCCGACAATTGGG+AGG - chr1.4:39019033-39019052 None:intergenic 50.0%
ACATGGAAGAGGCAGCAACA+GGG + chr1.4:39018056-39018075 MS.gene035538:CDS 50.0%
AGAGGGTGGAAACCTTGCTT+TGG + chr1.4:39018459-39018478 MS.gene035538:CDS 50.0%
AGATAGATGGGCAGAATGGG+GGG + chr1.4:39019242-39019261 MS.gene035538:CDS 50.0%
AGGCAAGTCAGATGCTTGTG+AGG + chr1.4:39017783-39017802 MS.gene035538:CDS 50.0%
ATCATGTTCGGCGGTAGCTA+TGG + chr1.4:39017751-39017770 MS.gene035538:CDS 50.0%
CCCGGTATACTCGCAGATAA+AGG - chr1.4:39019148-39019167 None:intergenic 50.0%
CTTCTTTCTTCCTCCATGGC+CGG - chr1.4:39018407-39018426 None:intergenic 50.0%
GAGGATTTCTTCACCACCCA+AGG + chr1.4:39017413-39017432 MS.gene035538:CDS 50.0%
GCATACTACGCTCCAAAGCA+AGG - chr1.4:39018474-39018493 None:intergenic 50.0%
GCTCTTGTCCTCCCAATTGT+CGG + chr1.4:39019022-39019041 MS.gene035538:CDS 50.0%
GCTTGTGAAAGGGAAGCCTT+TGG + chr1.4:39018978-39018997 MS.gene035538:CDS 50.0%
GGCAAGTCAGATGCTTGTGA+GGG + chr1.4:39017784-39017803 MS.gene035538:CDS 50.0%
GGGACGAGTATGGTTTGAAG+CGG - chr1.4:39017377-39017396 None:intergenic 50.0%
GGTTTGTGGTTCATCAGAGC+GGG + chr1.4:39018860-39018879 MS.gene035538:CDS 50.0%
GTGGAGGGGGAAATGTTGAA+TGG + chr1.4:39018079-39018098 MS.gene035538:CDS 50.0%
TGGTTGGGGAGTTACGTCTT+TGG + chr1.4:39019104-39019123 MS.gene035538:CDS 50.0%
TGTGGAGGCAGTGAAGAGAT+TGG + chr1.4:39017949-39017968 MS.gene035538:CDS 50.0%
TGTGTGGAGGCTTGTACTGA+TGG + chr1.4:39018901-39018920 MS.gene035538:CDS 50.0%
! GGCAGTGAAGAGATTGGTTG+AGG + chr1.4:39017955-39017974 MS.gene035538:CDS 50.0%
! GGGAGTGATTTGGGGATTGA+GGG - chr1.4:39017339-39017358 None:intergenic 50.0%
! TATGGTTTGAAGCGGTGCTC+CGG - chr1.4:39017369-39017388 None:intergenic 50.0%
! TGGGAGTGATTTGGGGATTG+AGG - chr1.4:39017340-39017359 None:intergenic 50.0%
!! AGTAGCAATTGGCTCGCCAT+TGG - chr1.4:39018317-39018336 None:intergenic 50.0%
AAGCGGTGCTCCGGTGTAAA+TGG - chr1.4:39017360-39017379 None:intergenic 55.0%
ACTATGGCATCCCTGACGAG+TGG + chr1.4:39019496-39019515 MS.gene035538:CDS 55.0%
AGCGGTGCTCCGGTGTAAAT+GGG - chr1.4:39017359-39017378 None:intergenic 55.0%
AGGTCTGCGCAAACTGGTTG+GGG + chr1.4:39019090-39019109 MS.gene035538:CDS 55.0%
ATGGAGATGGAGATGGGAGC+TGG + chr1.4:39018025-39018044 MS.gene035538:CDS 55.0%
CAGGTCTGCGCAAACTGGTT+GGG + chr1.4:39019089-39019108 MS.gene035538:CDS 55.0%
CATCAGAGCGGGAAAGCTAC+TGG + chr1.4:39018871-39018890 MS.gene035538:CDS 55.0%
CATGGAAGAGGCAGCAACAG+GGG + chr1.4:39018057-39018076 MS.gene035538:CDS 55.0%
CTATGGCATCCCTGACGAGT+GGG + chr1.4:39019497-39019516 MS.gene035538:CDS 55.0%
GTGGTTTCATAAGGGCTGCG+AGG + chr1.4:39018125-39018144 MS.gene035538:CDS 55.0%
GTGTTCAGGTCTGCGCAAAC+TGG + chr1.4:39019084-39019103 MS.gene035538:CDS 55.0%
TCAGAACCCTAACATGGGGG+TGG + chr1.4:39017673-39017692 MS.gene035538:CDS 55.0%
TCAGGTCTGCGCAAACTGGT+TGG + chr1.4:39019088-39019107 MS.gene035538:CDS 55.0%
! GGGAGCTGGTGATGAGAACA+TGG + chr1.4:39018039-39018058 MS.gene035538:CDS 55.0%
!! GGGTGCGTCTAGCTCTGGTA+AGG + chr1.4:39018540-39018559 MS.gene035538:CDS 60.0%
AGAGGCAGCAACAGGGGTGG+AGG + chr1.4:39018063-39018082 MS.gene035538:CDS 65.0%
AGGCAGCAACAGGGGTGGAG+GGG + chr1.4:39018065-39018084 MS.gene035538:CDS 65.0%
GAGGCAGCAACAGGGGTGGA+GGG + chr1.4:39018064-39018083 MS.gene035538:CDS 65.0%
GGAAGAGGCAGCAACAGGGG+TGG + chr1.4:39018060-39018079 MS.gene035538:CDS 65.0%
TGGCATCCCTGACGAGTGGG+CGG + chr1.4:39019500-39019519 MS.gene035538:CDS 65.0%
! GAAGGGGGTGCGTCTAGCTC+TGG + chr1.4:39018535-39018554 MS.gene035538:CDS 65.0%
AGCTTGCCCGCCCACTCGTC+AGG - chr1.4:39019510-39019529 None:intergenic 70.0%
GCTTGCCCGCCCACTCGTCA+GGG - chr1.4:39019509-39019528 None:intergenic 70.0%
GGCAGCAACAGGGGTGGAGG+GGG + chr1.4:39018066-39018085 MS.gene035538:CDS 70.0%
GGCATCCCTGACGAGTGGGC+GGG + chr1.4:39019501-39019520 MS.gene035538:CDS 70.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 39017329 39019545 39017329 ID=MS.gene035538
chr1.4 mRNA 39017329 39019545 39017329 ID=MS.gene035538.t1;Parent=MS.gene035538
chr1.4 exon 39017329 39019545 39017329 ID=MS.gene035538.t1.exon1;Parent=MS.gene035538.t1
chr1.4 CDS 39017329 39019545 39017329 ID=cds.MS.gene035538.t1;Parent=MS.gene035538.t1
Gene Sequence

>MS.gene035538

ATGTCAACCCTCAATCCCCAAATCACTCCCATTTACACCGGAGCACCGCTTCAAACCATACTCGTCCCAAAACCTAAACCTTTTGAGGATTTCTTCACCACCCAAGGTTCCCAAAAACAACCTCATTTCCCTCATGGATATGAACACAACAATCAACCTCATTTCCCTCCTGGATATGAACACAAAAATCAATCAAACCTCTACACTGAGTACTACAACATTCCACAATCTTCCAATGCTACTTCCGATAAATCCCTTTATCATTTTCTCAAAATCGATGATTCCAACAATGCTTTTGCCGCTTCAATGGAGAACTCAGTCAATATTTCCGACCTTGGACTAAATCAGAACCCTAACATGGGGGTGGATTTTGTGGATGATAGAATTGATCAATCTATTGTGCCCATTTCAAAGAAACAAGAATCATGTTCGGCGGTAGCTATGGTTAAGAAAAAGGCAAGTCAGATGCTTGTGAGGGTTTCAGATCTGAGTATGAAGGATCAGATGCATCGCAACATGATGAGGAGAACAAGGATGACTTATGATTCGCTACGTGTGTTGGAAAGTATTGAGGATGAGAAAAGAATTATTGAGGAGAAGAAATTGGCTGATGAAGTTTTTGTGGAGGCAGTGAAGAGATTGGTTGAGGAGAAGATGTTGGATGAGGATAGGATATTTGTTTCTGAAGTTGCGATTATGGAGATGGAGATGGGAGCTGGTGATGAGAACATGGAAGAGGCAGCAACAGGGGTGGAGGGGGAAATGTTGAATGGAAGAAGACATCATAATCATAGTCGTGGTTTCATAAGGGCTGCGAGGTTAATGAAGGACCGAAAGTTATGGTTGCATCGCGATAAAAGGATAGTTGGATCGATACCTGGAGTTTATGTTGGCGATGTTTTCTTGTATATGGTGGAATTATGTGTAATTGGTTTGCATATGCAGATACAAGATGGCATTGATTTTCTTCCTAAAAGTAGGTCTTCCAATGGCGAGCCAATTGCTACTAGTGTGATTGTTTCATGTGGTTATGAGGATGATATGGAATTGGATGATGGTGATGTAATAATCAATACCGGCCATGGAGGAAGAAAGAAGAATTCTTCAATTCAAATTTGTGATCAGAAATTAGAGGGTGGAAACCTTGCTTTGGAGCGTAGTATGCATTACGGGATCGAGATTAGGGTCATTCGTGAGATGAAGTATGAAGGGGGTGCGTCTAGCTCTGGTAAGGTTTATGTTTATGATGGATTATATAGGATTACTGATTGCTGGTTTGAAGAAGGGATGTCTGGTTTTAGAGTTTTTAAGTATAAGTTATTGAGAATTGAGGGGCAAGCTAAGATGGGTAGTGTTGTTCTAAAAAAGGCTAGGGAGATTAAGAAAATTGGGTTGGATGTTAAGCCTATGTATTGTCTTTCTGTTGATATTTCACACAAGAGGGAGAATGTTCCTGTTAGGCTATTTAATGACATAGATGACAATCAAGAACCTCTTTATTATGAGTATCTTCCGAAAACTACTTTTCCGTGGTTTGTGGTTCATCAGAGCGGGAAAGCTACTGGTTGTGAATGTGTGGAGGCTTGTACTGATGGCTGCTTTTGCTCTATGAAGAATGGAGGAGAGTTTCCCTATAATCTTCAGGGTTTGCTTGTGAAAGGGAAGCCTTTGGTTTTTGAATGTGGCCCTTTTTGCTCTTGTCCTCCCAATTGTCGGAATCGTGTTGCACAAAAGGGGATCAAGCATAGGTTGGAAGTGTTCAGGTCTGCGCAAACTGGTTGGGGAGTTACGTCTTTGGATCTTATTCAGGCTGGAGCCTTTATCTGCGAGTATACCGGGGTAATTTTAACAAGGGAACAAGCTCAAATTTTAACAATGAATGGTGACTCGTTAATATATCCAAAACGGTTTATAGATAGATGGGCAGAATGGGGGGATTTGTCTCAGATATATAATAATTATGTTCGTCCATCATATCAATTAATACCTGATATAGATTATTCTATGGATATATCAACATTGCGAAATGTTGCTGGCTATATGAGCCATAGTTGGAGTCCAAATGTATTTGTTCAATTTGTTCTCTATGATCATAACAATCTGATGTTCCCCCGTCTCATGCTATATGCAATGGAGAACATCCCTCCATTGAGAGAACTCAGCATAGACTATGGCATCCCTGACGAGTGGGCGGGCAAGCTATCAATATGTATGTAA
Protein sequence

>MS.gene035538.t1

MSTLNPQITPIYTGAPLQTILVPKPKPFEDFFTTQGSQKQPHFPHGYEHNNQPHFPPGYEHKNQSNLYTEYYNIPQSSNATSDKSLYHFLKIDDSNNAFAASMENSVNISDLGLNQNPNMGVDFVDDRIDQSIVPISKKQESCSAVAMVKKKASQMLVRVSDLSMKDQMHRNMMRRTRMTYDSLRVLESIEDEKRIIEEKKLADEVFVEAVKRLVEEKMLDEDRIFVSEVAIMEMEMGAGDENMEEAATGVEGEMLNGRRHHNHSRGFIRAARLMKDRKLWLHRDKRIVGSIPGVYVGDVFLYMVELCVIGLHMQIQDGIDFLPKSRSSNGEPIATSVIVSCGYEDDMELDDGDVIINTGHGGRKKNSSIQICDQKLEGGNLALERSMHYGIEIRVIREMKYEGGASSSGKVYVYDGLYRITDCWFEEGMSGFRVFKYKLLRIEGQAKMGSVVLKKAREIKKIGLDVKPMYCLSVDISHKRENVPVRLFNDIDDNQEPLYYEYLPKTTFPWFVVHQSGKATGCECVEACTDGCFCSMKNGGEFPYNLQGLLVKGKPLVFECGPFCSCPPNCRNRVAQKGIKHRLEVFRSAQTGWGVTSLDLIQAGAFICEYTGVILTREQAQILTMNGDSLIYPKRFIDRWAEWGDLSQIYNNYVRPSYQLIPDIDYSMDISTLRNVAGYMSHSWSPNVFVQFVLYDHNNLMFPRLMLYAMENIPPLRELSIDYGIPDEWAGKLSICM