Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene03554.t1 | AFK34595.1 | 87.4 | 469 | 55 | 1 | 1 | 469 | 1 | 465 | 1.10E-189 | 672.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene03554.t1 | Q8LFV3 | 46.5 | 372 | 138 | 12 | 131 | 467 | 101 | 446 | 2.9e-71 | 270.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene03554.t1 | I3S2V3 | 87.4 | 469 | 55 | 1 | 1 | 469 | 1 | 465 | 7.6e-190 | 672.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene03554.t1 | TF | C2C2-Dof |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene03554.t1 | MTR_3g435480 | 88.699 | 469 | 49 | 2 | 1 | 469 | 1 | 465 | 0.0 | 843 |
MS.gene03554.t1 | MTR_4g082060 | 42.394 | 493 | 228 | 18 | 1 | 467 | 1 | 463 | 9.90e-106 | 322 |
MS.gene03554.t1 | MTR_7g010950 | 41.651 | 521 | 217 | 16 | 1 | 469 | 1 | 486 | 2.33e-100 | 309 |
MS.gene03554.t1 | MTR_6g012450 | 42.004 | 519 | 227 | 19 | 1 | 469 | 1 | 495 | 6.56e-100 | 308 |
MS.gene03554.t1 | MTR_5g041530 | 37.864 | 412 | 156 | 16 | 62 | 467 | 62 | 379 | 4.27e-63 | 209 |
MS.gene03554.t1 | MTR_8g044220 | 33.742 | 489 | 238 | 18 | 5 | 468 | 11 | 438 | 6.88e-59 | 200 |
MS.gene03554.t1 | MTR_5g041400 | 39.024 | 369 | 116 | 13 | 111 | 467 | 90 | 361 | 1.91e-58 | 197 |
MS.gene03554.t1 | MTR_5g041380 | 33.054 | 478 | 196 | 17 | 4 | 467 | 2 | 369 | 3.51e-57 | 194 |
MS.gene03554.t1 | MTR_7g086780 | 34.896 | 384 | 188 | 11 | 71 | 423 | 36 | 388 | 1.08e-52 | 183 |
MS.gene03554.t1 | MTR_5g041420 | 39.706 | 204 | 112 | 5 | 9 | 204 | 7 | 207 | 1.01e-38 | 143 |
MS.gene03554.t1 | MTR_6g027460 | 36.538 | 260 | 111 | 9 | 107 | 344 | 53 | 280 | 5.11e-38 | 142 |
MS.gene03554.t1 | MTR_6g027450 | 36.996 | 273 | 123 | 11 | 109 | 342 | 48 | 310 | 4.62e-37 | 139 |
MS.gene03554.t1 | MTR_2g016030 | 78.333 | 60 | 13 | 0 | 134 | 193 | 41 | 100 | 8.66e-31 | 117 |
MS.gene03554.t1 | MTR_8g079060 | 56.322 | 87 | 34 | 2 | 140 | 226 | 29 | 111 | 5.53e-28 | 111 |
MS.gene03554.t1 | MTR_3g091820 | 61.333 | 75 | 29 | 0 | 119 | 193 | 22 | 96 | 7.23e-27 | 110 |
MS.gene03554.t1 | MTR_2g093220 | 72.881 | 59 | 16 | 0 | 135 | 193 | 35 | 93 | 5.79e-26 | 107 |
MS.gene03554.t1 | MTR_8g027295 | 69.492 | 59 | 18 | 0 | 135 | 193 | 19 | 77 | 7.03e-26 | 106 |
MS.gene03554.t1 | MTR_1g077600 | 49.515 | 103 | 46 | 3 | 142 | 244 | 45 | 141 | 1.39e-24 | 103 |
MS.gene03554.t1 | MTR_1g077600 | 49.515 | 103 | 46 | 3 | 142 | 244 | 45 | 141 | 1.58e-24 | 103 |
MS.gene03554.t1 | MTR_8g479350 | 67.797 | 59 | 19 | 0 | 140 | 198 | 68 | 126 | 3.71e-24 | 103 |
MS.gene03554.t1 | MTR_4g088580 | 76.923 | 52 | 12 | 0 | 142 | 193 | 57 | 108 | 4.83e-24 | 103 |
MS.gene03554.t1 | MTR_4g022370 | 59.091 | 66 | 27 | 0 | 128 | 193 | 70 | 135 | 6.72e-24 | 103 |
MS.gene03554.t1 | MTR_4g461080 | 75.472 | 53 | 13 | 0 | 140 | 192 | 29 | 81 | 6.73e-24 | 101 |
MS.gene03554.t1 | MTR_1g056810 | 66.129 | 62 | 20 | 1 | 142 | 202 | 14 | 75 | 7.14e-24 | 101 |
MS.gene03554.t1 | MTR_3g090430 | 73.077 | 52 | 14 | 0 | 142 | 193 | 53 | 104 | 1.11e-23 | 102 |
MS.gene03554.t1 | MTR_3g077750 | 66.129 | 62 | 20 | 1 | 130 | 190 | 50 | 111 | 1.69e-23 | 101 |
MS.gene03554.t1 | MTR_2g096740 | 70.370 | 54 | 16 | 0 | 140 | 193 | 62 | 115 | 2.17e-23 | 100 |
MS.gene03554.t1 | MTR_2g096740 | 70.370 | 54 | 16 | 0 | 140 | 193 | 77 | 130 | 2.21e-23 | 100 |
MS.gene03554.t1 | MTR_4g063780 | 59.722 | 72 | 28 | 1 | 128 | 198 | 63 | 134 | 3.86e-23 | 100 |
MS.gene03554.t1 | MTR_2g059540 | 75.510 | 49 | 12 | 0 | 140 | 188 | 31 | 79 | 6.37e-23 | 96.7 |
MS.gene03554.t1 | MTR_8g068210 | 50.588 | 85 | 36 | 1 | 109 | 193 | 7 | 85 | 6.50e-23 | 99.8 |
MS.gene03554.t1 | MTR_8g015840 | 64.516 | 62 | 22 | 0 | 140 | 201 | 20 | 81 | 7.91e-23 | 96.7 |
MS.gene03554.t1 | MTR_4g089095 | 68.519 | 54 | 17 | 0 | 140 | 193 | 50 | 103 | 1.25e-22 | 98.2 |
MS.gene03554.t1 | MTR_2g014170 | 75.510 | 49 | 12 | 0 | 140 | 188 | 45 | 93 | 1.47e-22 | 98.2 |
MS.gene03554.t1 | MTR_4g089095 | 68.519 | 54 | 17 | 0 | 140 | 193 | 16 | 69 | 1.68e-22 | 97.1 |
MS.gene03554.t1 | MTR_2g013370 | 75.000 | 52 | 12 | 1 | 142 | 193 | 48 | 98 | 2.81e-22 | 96.7 |
MS.gene03554.t1 | MTR_2g014060 | 72.000 | 50 | 14 | 0 | 142 | 191 | 27 | 76 | 3.28e-22 | 97.8 |
MS.gene03554.t1 | MTR_4g109980 | 67.925 | 53 | 17 | 0 | 138 | 190 | 38 | 90 | 4.36e-22 | 97.1 |
MS.gene03554.t1 | MTR_7g059400 | 57.576 | 66 | 28 | 0 | 128 | 193 | 64 | 129 | 4.85e-22 | 97.4 |
MS.gene03554.t1 | MTR_7g024670 | 72.549 | 51 | 14 | 0 | 142 | 192 | 79 | 129 | 5.11e-22 | 97.8 |
MS.gene03554.t1 | MTR_5g031440 | 63.636 | 55 | 20 | 0 | 136 | 190 | 39 | 93 | 1.36e-21 | 95.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene03554.t1 | AT3G47500 | 46.906 | 501 | 176 | 20 | 1 | 467 | 2 | 446 | 1.96e-108 | 329 |
MS.gene03554.t1 | AT5G39660 | 39.960 | 498 | 222 | 19 | 6 | 469 | 3 | 457 | 1.18e-83 | 265 |
MS.gene03554.t1 | AT5G39660 | 39.960 | 498 | 222 | 19 | 6 | 469 | 3 | 457 | 1.18e-83 | 265 |
MS.gene03554.t1 | AT5G39660 | 39.960 | 498 | 222 | 19 | 6 | 469 | 3 | 457 | 1.18e-83 | 265 |
MS.gene03554.t1 | AT5G62430 | 44.974 | 378 | 108 | 14 | 97 | 467 | 12 | 296 | 1.13e-81 | 255 |
MS.gene03554.t1 | AT1G69570 | 34.091 | 484 | 215 | 20 | 1 | 468 | 1 | 396 | 2.85e-53 | 184 |
MS.gene03554.t1 | AT1G26790 | 34.615 | 364 | 162 | 15 | 109 | 467 | 78 | 370 | 4.68e-44 | 159 |
MS.gene03554.t1 | AT2G34140 | 56.989 | 93 | 40 | 0 | 101 | 193 | 19 | 111 | 3.90e-33 | 123 |
MS.gene03554.t1 | AT1G29160 | 80.000 | 60 | 12 | 0 | 134 | 193 | 56 | 115 | 2.18e-32 | 122 |
MS.gene03554.t1 | AT5G60200 | 49.038 | 104 | 51 | 1 | 136 | 237 | 51 | 154 | 4.60e-27 | 109 |
MS.gene03554.t1 | AT3G61850 | 65.079 | 63 | 22 | 0 | 135 | 197 | 57 | 119 | 2.85e-25 | 105 |
MS.gene03554.t1 | AT3G61850 | 65.079 | 63 | 22 | 0 | 135 | 197 | 57 | 119 | 2.85e-25 | 105 |
MS.gene03554.t1 | AT3G61850 | 65.079 | 63 | 22 | 0 | 135 | 197 | 69 | 131 | 3.06e-25 | 105 |
MS.gene03554.t1 | AT3G50410 | 71.930 | 57 | 16 | 0 | 140 | 196 | 30 | 86 | 3.21e-25 | 104 |
MS.gene03554.t1 | AT4G24060 | 62.121 | 66 | 25 | 0 | 128 | 193 | 41 | 106 | 3.51e-25 | 106 |
MS.gene03554.t1 | AT2G28510 | 71.186 | 59 | 17 | 0 | 142 | 200 | 50 | 108 | 3.82e-25 | 105 |
MS.gene03554.t1 | AT3G61850 | 65.079 | 63 | 22 | 0 | 135 | 197 | 69 | 131 | 4.27e-25 | 105 |
MS.gene03554.t1 | AT3G61850 | 65.079 | 63 | 22 | 0 | 135 | 197 | 57 | 119 | 4.36e-25 | 105 |
MS.gene03554.t1 | AT3G45610 | 61.905 | 63 | 24 | 0 | 136 | 198 | 36 | 98 | 6.02e-25 | 103 |
MS.gene03554.t1 | AT2G28810 | 65.574 | 61 | 21 | 0 | 131 | 191 | 68 | 128 | 1.79e-24 | 103 |
MS.gene03554.t1 | AT1G51700 | 57.333 | 75 | 28 | 1 | 140 | 210 | 33 | 107 | 2.60e-24 | 100 |
MS.gene03554.t1 | AT2G28810 | 65.574 | 61 | 21 | 0 | 131 | 191 | 85 | 145 | 2.70e-24 | 103 |
MS.gene03554.t1 | AT1G28310 | 74.074 | 54 | 14 | 0 | 140 | 193 | 27 | 80 | 3.52e-24 | 102 |
MS.gene03554.t1 | AT1G28310 | 74.074 | 54 | 14 | 0 | 140 | 193 | 51 | 104 | 5.92e-24 | 102 |
MS.gene03554.t1 | AT5G60850 | 62.121 | 66 | 25 | 0 | 128 | 193 | 39 | 104 | 9.76e-24 | 101 |
MS.gene03554.t1 | AT3G21270 | 73.585 | 53 | 14 | 0 | 140 | 192 | 29 | 81 | 1.06e-23 | 99.0 |
MS.gene03554.t1 | AT4G00940 | 67.797 | 59 | 19 | 0 | 135 | 193 | 63 | 121 | 1.06e-23 | 101 |
MS.gene03554.t1 | AT4G00940 | 67.797 | 59 | 19 | 0 | 135 | 193 | 63 | 121 | 1.06e-23 | 101 |
MS.gene03554.t1 | AT4G00940 | 67.797 | 59 | 19 | 0 | 135 | 193 | 63 | 121 | 1.06e-23 | 101 |
MS.gene03554.t1 | AT1G21340 | 62.295 | 61 | 22 | 1 | 142 | 201 | 40 | 100 | 1.12e-23 | 100 |
MS.gene03554.t1 | AT3G55370 | 55.714 | 70 | 31 | 0 | 136 | 205 | 72 | 141 | 1.22e-23 | 101 |
MS.gene03554.t1 | AT3G55370 | 55.714 | 70 | 31 | 0 | 136 | 205 | 72 | 141 | 1.31e-23 | 102 |
MS.gene03554.t1 | AT1G47655 | 77.551 | 49 | 11 | 0 | 140 | 188 | 29 | 77 | 1.36e-23 | 99.0 |
MS.gene03554.t1 | AT2G37590 | 57.576 | 66 | 28 | 0 | 128 | 193 | 77 | 142 | 1.70e-23 | 101 |
MS.gene03554.t1 | AT1G07640 | 71.698 | 53 | 15 | 0 | 140 | 192 | 21 | 73 | 1.70e-23 | 100 |
MS.gene03554.t1 | AT3G55370 | 62.903 | 62 | 23 | 0 | 136 | 197 | 117 | 178 | 1.79e-23 | 102 |
MS.gene03554.t1 | AT1G07640 | 71.698 | 53 | 15 | 0 | 140 | 192 | 77 | 129 | 1.79e-23 | 101 |
MS.gene03554.t1 | AT1G07640 | 71.698 | 53 | 15 | 0 | 140 | 192 | 85 | 137 | 2.29e-23 | 101 |
MS.gene03554.t1 | AT3G52440 | 68.421 | 57 | 18 | 0 | 142 | 198 | 27 | 83 | 2.31e-23 | 99.4 |
MS.gene03554.t1 | AT3G52440 | 68.421 | 57 | 18 | 0 | 142 | 198 | 46 | 102 | 2.65e-23 | 99.4 |
MS.gene03554.t1 | AT5G66940 | 48.315 | 89 | 43 | 1 | 114 | 199 | 3 | 91 | 2.86e-23 | 98.2 |
MS.gene03554.t1 | AT1G64620 | 63.934 | 61 | 22 | 0 | 128 | 188 | 37 | 97 | 3.05e-23 | 100 |
MS.gene03554.t1 | AT2G46590 | 69.811 | 53 | 16 | 0 | 135 | 187 | 63 | 115 | 4.44e-23 | 100 |
MS.gene03554.t1 | AT2G46590 | 69.811 | 53 | 16 | 0 | 135 | 187 | 75 | 127 | 5.03e-23 | 100 |
MS.gene03554.t1 | AT5G65590 | 70.370 | 54 | 16 | 0 | 140 | 193 | 41 | 94 | 6.27e-23 | 99.4 |
MS.gene03554.t1 | AT5G02460 | 59.091 | 66 | 27 | 0 | 128 | 193 | 83 | 148 | 1.64e-22 | 99.8 |
MS.gene03554.t1 | AT5G62940 | 73.469 | 49 | 13 | 0 | 142 | 190 | 75 | 123 | 1.66e-21 | 96.3 |
MS.gene03554.t1 | AT4G21050 | 57.971 | 69 | 29 | 0 | 125 | 193 | 9 | 77 | 2.00e-21 | 92.8 |
MS.gene03554.t1 | AT4G38000 | 64.286 | 56 | 19 | 1 | 139 | 194 | 40 | 94 | 6.17e-21 | 92.4 |
MS.gene03554.t1 | AT4G21040 | 63.462 | 52 | 19 | 0 | 142 | 193 | 27 | 78 | 1.41e-18 | 85.1 |
MS.gene03554.t1 | AT4G21080 | 61.538 | 52 | 20 | 0 | 142 | 193 | 27 | 78 | 8.65e-18 | 83.2 |
MS.gene03554.t1 | AT4G21030 | 59.091 | 44 | 18 | 0 | 142 | 185 | 23 | 66 | 1.11e-11 | 64.3 |
Find 103 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGTTACAATTTCAAAATCTA+TGG | 0.218060 | 3.4:-30182644 | MS.gene03554:CDS |
GACCCTGAAATTAAGCTCTT+TGG | 0.245711 | 3.4:-30184695 | MS.gene03554:CDS |
ACACATCCATTTCTTTGTTT+TGG | 0.257358 | 3.4:+30182295 | None:intergenic |
GAATAGGGGTGGTATGATTA+AGG | 0.274373 | 3.4:-30182182 | MS.gene03554:CDS |
TCAGCATCTTTATCTGCTTC+AGG | 0.276517 | 3.4:+30183270 | None:intergenic |
GCAAGGCGTGTCAAAGATAT+TGG | 0.279470 | 3.4:-30182963 | MS.gene03554:CDS |
TTCCCGAGCGTTGGAGATTT+CGG | 0.285344 | 3.4:+30182388 | None:intergenic |
TTCCCAAAGAGCTTAATTTC+AGG | 0.291841 | 3.4:+30184692 | None:intergenic |
TCTCAATCCTGTGGAGAAAA+AGG | 0.292089 | 3.4:-30182716 | MS.gene03554:CDS |
AAGCTGCAAAGAGTTCAATT+TGG | 0.294104 | 3.4:-30182234 | MS.gene03554:CDS |
GAACTCTTTGCAGCTTCATT+TGG | 0.306321 | 3.4:+30182241 | None:intergenic |
GCAAGAATTATTTCTCCTAA+TGG | 0.319242 | 3.4:-30182829 | MS.gene03554:CDS |
TAAGAATGAAGGTTTGAATA+GGG | 0.329266 | 3.4:-30182197 | MS.gene03554:CDS |
ACCCTGAAATTAAGCTCTTT+GGG | 0.333537 | 3.4:-30184694 | MS.gene03554:CDS |
AATGGTAGAGTTCTCAGCTT+TGG | 0.361480 | 3.4:-30182778 | MS.gene03554:CDS |
GTGCTCCTTGGCCTTATACT+TGG | 0.364975 | 3.4:-30182540 | MS.gene03554:CDS |
CTCAACGACACTCGAAATAA+TGG | 0.366706 | 3.4:-30182691 | MS.gene03554:CDS |
AGCTGCAAAGAGTTCAATTT+GGG | 0.368742 | 3.4:-30182233 | MS.gene03554:CDS |
GCGCCGGAACTCCAAGTATA+AGG | 0.369585 | 3.4:+30182529 | None:intergenic |
TCATTGCCACAGCAAAATAA+TGG | 0.377056 | 3.4:-30182592 | MS.gene03554:CDS |
TTAAGAATGAAGGTTTGAAT+AGG | 0.377391 | 3.4:-30182198 | MS.gene03554:CDS |
GTGATTCTTCTGTTTGCAAA+TGG | 0.382048 | 3.4:+30182317 | None:intergenic |
TTCTTGATCTCTGCGGCATC+TGG | 0.383443 | 3.4:+30183222 | None:intergenic |
TGAAGATGATGAGTTCCATT+AGG | 0.387458 | 3.4:+30182814 | None:intergenic |
ATGGTAGAGTTCTCAGCTTT+GGG | 0.396367 | 3.4:-30182777 | MS.gene03554:CDS |
AACCAAGGAACATTCCAAAA+AGG | 0.400329 | 3.4:+30182448 | None:intergenic |
TGGCCTTATACTTGGAGTTC+CGG | 0.405276 | 3.4:-30182532 | MS.gene03554:CDS |
TCTTGAGCGTTGTTGTTGTT+TGG | 0.409763 | 3.4:+30183096 | None:intergenic |
GCGCTGTTGCAGCGTGGACA+CGG | 0.414640 | 3.4:+30183042 | None:intergenic |
AGAAATGTTCCGGTCGGTGC+AGG | 0.415448 | 3.4:-30182922 | MS.gene03554:CDS |
TCAAACCTCTCCAATGTTGA+TGG | 0.423970 | 3.4:-30182125 | MS.gene03554:CDS |
GAATCACCAAAACAAAGAAA+TGG | 0.432133 | 3.4:-30182301 | MS.gene03554:CDS |
TCCCAAAGAGCTTAATTTCA+GGG | 0.435590 | 3.4:+30184693 | None:intergenic |
TTCTTATTTAAGAGTTCTCA+TGG | 0.441058 | 3.4:+30182068 | None:intergenic |
CATGTATGACTAGTGCTCCT+TGG | 0.447113 | 3.4:-30182552 | MS.gene03554:CDS |
GGAGTTGTCGCGGGAGGATG+AGG | 0.450845 | 3.4:+30182421 | None:intergenic |
TGTTTCGCCGGTGGCGGCGA+TGG | 0.453817 | 3.4:-30184615 | MS.gene03554:CDS |
ATCTCTGCGGCATCTGGTGG+AGG | 0.457276 | 3.4:+30183228 | None:intergenic |
CGGAACCATGAGAAATGTTC+CGG | 0.463308 | 3.4:-30182932 | MS.gene03554:CDS |
ACACTTGGAATTAAGAATGA+AGG | 0.464706 | 3.4:-30182208 | MS.gene03554:CDS |
TAGAGTTCTCAGCTTTGGGT+TGG | 0.472520 | 3.4:-30182773 | MS.gene03554:CDS |
GGAGATTTCGGACTAGACTT+TGG | 0.480630 | 3.4:+30182400 | None:intergenic |
AGTGATCTAGCTAAAGCTGC+AGG | 0.482293 | 3.4:+30182097 | None:intergenic |
CCACAAACTTTGTGTCCTCC+AGG | 0.482373 | 3.4:-30182496 | MS.gene03554:CDS |
AACAATTCAGCAGCAACATT+GGG | 0.489579 | 3.4:-30183192 | MS.gene03554:CDS |
CTCGAGTGTTTCCCGAGCGT+TGG | 0.492099 | 3.4:+30182379 | None:intergenic |
TAAAATGACATGGGAAATCC+TGG | 0.496063 | 3.4:+30182478 | None:intergenic |
CCTGGAGGACACAAAGTTTG+TGG | 0.502884 | 3.4:+30182496 | None:intergenic |
GGAAAATGTTTCGCCGGTGG+CGG | 0.507124 | 3.4:-30184621 | MS.gene03554:CDS |
TTTCTTCTCCCTGCACCGAC+CGG | 0.507717 | 3.4:+30182913 | None:intergenic |
AGTTCAATTTGGGAAACACT+TGG | 0.509045 | 3.4:-30182223 | MS.gene03554:CDS |
TTGATCTCTGCGGCATCTGG+TGG | 0.510926 | 3.4:+30183225 | None:intergenic |
GGTGAAGCTCTTATCACTGC+TGG | 0.511617 | 3.4:-30184647 | MS.gene03554:CDS |
CGCTGTTGCAGCGTGGACAC+GGG | 0.514091 | 3.4:+30183043 | None:intergenic |
TGTCAAAGATATTGGACTGC+AGG | 0.515747 | 3.4:-30182955 | MS.gene03554:CDS |
GGACACGGGAGTAATTTGTC+TGG | 0.517983 | 3.4:+30183057 | None:intergenic |
GTCCGAAATCTCCAACGCTC+GGG | 0.523433 | 3.4:-30182390 | MS.gene03554:CDS |
CAACAATTCAGCAGCAACAT+TGG | 0.525068 | 3.4:-30183193 | MS.gene03554:CDS |
CTTCAAAATTTGAAAACCAA+TGG | 0.530626 | 3.4:-30182796 | MS.gene03554:CDS |
TCTACATCCATCGCCGCCAC+CGG | 0.533306 | 3.4:+30184608 | None:intergenic |
CTAGACTTTGGAGTTGTCGC+GGG | 0.536862 | 3.4:+30182412 | None:intergenic |
GAAGTTTCTTCATCTATGGA+AGG | 0.537934 | 3.4:+30183150 | None:intergenic |
GACTTTGGAGTTGTCGCGGG+AGG | 0.543372 | 3.4:+30182415 | None:intergenic |
AAGAATGAAGGTTTGAATAG+GGG | 0.550009 | 3.4:-30182196 | MS.gene03554:CDS |
AGTCCGAAATCTCCAACGCT+CGG | 0.553078 | 3.4:-30182391 | MS.gene03554:CDS |
GGACACAAAGTTTGTGGCGA+GGG | 0.554181 | 3.4:+30182502 | None:intergenic |
TCAAAATCTATGGAGGAAAG+TGG | 0.566667 | 3.4:-30182634 | MS.gene03554:CDS |
TACAATTTCAAAATCTATGG+AGG | 0.567772 | 3.4:-30182641 | MS.gene03554:CDS |
TTGTGGCGAGGGAATTGCGC+CGG | 0.571745 | 3.4:+30182513 | None:intergenic |
GAACTCCAAGTATAAGGCCA+AGG | 0.577392 | 3.4:+30182535 | None:intergenic |
CAACGCTCGGGAAACACTCG+AGG | 0.578385 | 3.4:-30182378 | MS.gene03554:CDS |
CAAGGAGCACTAGTCATACA+TGG | 0.583891 | 3.4:+30182553 | None:intergenic |
GCAGGGTTAGCCATCAACAT+TGG | 0.587131 | 3.4:+30182115 | None:intergenic |
AAAGCTGAGAACTCTACCAT+TGG | 0.588853 | 3.4:+30182780 | None:intergenic |
GACAATGAATCATAGATATG+TGG | 0.589586 | 3.4:+30182745 | None:intergenic |
AGGAGCAGGGTAAAATGACA+TGG | 0.595195 | 3.4:+30182468 | None:intergenic |
ATAAGAGCTTCACCTTCCCC+AGG | 0.600696 | 3.4:+30184656 | None:intergenic |
TGAAGAAGAAGAAATCGAGA+AGG | 0.603186 | 3.4:-30184543 | MS.gene03554:intron |
ACCGACCGGAACATTTCTCA+TGG | 0.607090 | 3.4:+30182927 | None:intergenic |
ACTAGACTTTGGAGTTGTCG+CGG | 0.607556 | 3.4:+30182411 | None:intergenic |
CAAAGATATTGGACTGCAGG+CGG | 0.608252 | 3.4:-30182952 | MS.gene03554:CDS |
AATGAAGGTTTGAATAGGGG+TGG | 0.610382 | 3.4:-30182193 | MS.gene03554:CDS |
GAAATGTTCCGGTCGGTGCA+GGG | 0.612559 | 3.4:-30182921 | MS.gene03554:CDS |
TGAGGAAAATGTTTCGCCGG+TGG | 0.625717 | 3.4:-30184624 | MS.gene03554:CDS |
TGCATCAAGAGCCTCAGAGA+TGG | 0.626336 | 3.4:+30182852 | None:intergenic |
GTTAGCCATCAACATTGGAG+AGG | 0.627108 | 3.4:+30182120 | None:intergenic |
GTCAAATGATCTCAATCCTG+TGG | 0.628078 | 3.4:-30182725 | MS.gene03554:CDS |
TGGTGAGGAAAATGTTTCGC+CGG | 0.632349 | 3.4:-30184627 | MS.gene03554:CDS |
AGCTCTTATCACTGCTGGTG+AGG | 0.635032 | 3.4:-30184642 | MS.gene03554:CDS |
GTGATCTAGCTAAAGCTGCA+GGG | 0.636623 | 3.4:+30182098 | None:intergenic |
CTAGTCATACATGGAACTTG+AGG | 0.637687 | 3.4:+30182562 | None:intergenic |
ACATTGGAGAGGTTTGAACA+TGG | 0.639471 | 3.4:+30182131 | None:intergenic |
GGAGGATGAGGCGAAAACCA+AGG | 0.654027 | 3.4:+30182433 | None:intergenic |
ACCATGAGAAATGTTCCGGT+CGG | 0.654901 | 3.4:-30182928 | MS.gene03554:CDS |
GAGCCTCAGAGATGGTGATG+TGG | 0.657067 | 3.4:+30182860 | None:intergenic |
AGGACACAAAGTTTGTGGCG+AGG | 0.667462 | 3.4:+30182501 | None:intergenic |
AACGCTCGGGAAACACTCGA+GGG | 0.678249 | 3.4:-30182377 | MS.gene03554:CDS |
GTTGTCGTTCTTGATCTCTG+CGG | 0.679992 | 3.4:+30183215 | None:intergenic |
GGAGCAGGGTAAAATGACAT+GGG | 0.680900 | 3.4:+30182469 | None:intergenic |
TCGCCACATCACCATCTCTG+AGG | 0.699550 | 3.4:-30182863 | MS.gene03554:CDS |
GTGTCCGCGCTGTTGCAGCG+TGG | 0.703298 | 3.4:+30183036 | None:intergenic |
AATGACATGGGAAATCCTGG+AGG | 0.743399 | 3.4:+30182481 | None:intergenic |
GTGTCCACGCTGCAACAGCG+CGG | 0.758797 | 3.4:-30183040 | MS.gene03554:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TATAGAAAAAATTGTAAAAA+AGG | + | chr3.4:30182631-30182650 | None:intergenic | 10.0% |
!!! | TTTTTACAATTTTTTCTATA+TGG | - | chr3.4:30182631-30182650 | MS.gene03554:CDS | 10.0% |
!! | AATTAAATAAATTTGAGCAT+AGG | - | chr3.4:30182583-30182602 | MS.gene03554:CDS | 15.0% |
!! | ATTAAATAAATTTGAGCATA+GGG | - | chr3.4:30182584-30182603 | MS.gene03554:CDS | 15.0% |
!!! | TTGATTTATTTTTGATGTTT+TGG | - | chr3.4:30182854-30182873 | MS.gene03554:CDS | 15.0% |
!!! | TTTTAATTTTTACATGAAGT+TGG | - | chr3.4:30182810-30182829 | MS.gene03554:CDS | 15.0% |
!! | AAAAATTGAAAATTCCCTAA+GGG | + | chr3.4:30182687-30182706 | None:intergenic | 20.0% |
!! | AAACATTGTGTCAAATTAAT+AGG | - | chr3.4:30183490-30183509 | MS.gene03554:intron | 20.0% |
!! | AATATATATTGCATCAATTG+AGG | + | chr3.4:30183097-30183116 | None:intergenic | 20.0% |
!! | ATATTGTCTCAAATAATTAG+CGG | - | chr3.4:30183412-30183431 | MS.gene03554:intron | 20.0% |
!! | ATTGAAAAAGTCAATAAGAT+TGG | - | chr3.4:30182458-30182477 | MS.gene03554:CDS | 20.0% |
!! | TAAAAATTGAAAATTCCCTA+AGG | + | chr3.4:30182688-30182707 | None:intergenic | 20.0% |
!! | TGTTACAATTTCAAAATCTA+TGG | - | chr3.4:30184141-30184160 | MS.gene03554:intron | 20.0% |
!! | TGTTTGTATGATCTTATTAT+AGG | - | chr3.4:30182520-30182539 | MS.gene03554:CDS | 20.0% |
!!! | ACTAAAGATTTTTATGAGTA+AGG | - | chr3.4:30182318-30182337 | MS.gene03554:CDS | 20.0% |
! | AAAATTGAAAATTCCCTAAG+GGG | + | chr3.4:30182686-30182705 | None:intergenic | 25.0% |
! | CTTCAAAATTTGAAAACCAA+TGG | - | chr3.4:30183989-30184008 | MS.gene03554:intron | 25.0% |
! | TAAGAATGAAGGTTTGAATA+GGG | - | chr3.4:30184588-30184607 | MS.gene03554:CDS | 25.0% |
! | TACAATTTCAAAATCTATGG+AGG | - | chr3.4:30184144-30184163 | MS.gene03554:intron | 25.0% |
! | TTAAGAATGAAGGTTTGAAT+AGG | - | chr3.4:30184587-30184606 | MS.gene03554:CDS | 25.0% |
! | TTCAGATTTGGAAAAATGTT+TGG | - | chr3.4:30183337-30183356 | MS.gene03554:intron | 25.0% |
! | TTTAGTAACTCATATGAGTT+AGG | + | chr3.4:30183156-30183175 | None:intergenic | 25.0% |
!! | TCATCAATTCTCAATGTTTT+AGG | + | chr3.4:30184523-30184542 | None:intergenic | 25.0% |
!!! | ATTTTTACATGAAGTTGGTA+AGG | - | chr3.4:30182815-30182834 | MS.gene03554:CDS | 25.0% |
!!! | TTTTGAAGTTTCTTCATCTA+TGG | + | chr3.4:30183642-30183661 | None:intergenic | 25.0% |
AAATTATGCACTTATGCTCT+TGG | - | chr3.4:30183297-30183316 | MS.gene03554:intron | 30.0% | |
AACTATTGTATGTGTAACTG+TGG | + | chr3.4:30183378-30183397 | None:intergenic | 30.0% | |
AAGAATGAAGGTTTGAATAG+GGG | - | chr3.4:30184589-30184608 | MS.gene03554:CDS | 30.0% | |
ACACTTGGAATTAAGAATGA+AGG | - | chr3.4:30184577-30184596 | MS.gene03554:CDS | 30.0% | |
ATCGTGCATATTTGATATCA+CGG | - | chr3.4:30182361-30182380 | MS.gene03554:CDS | 30.0% | |
GAATCACCAAAACAAAGAAA+TGG | - | chr3.4:30184484-30184503 | MS.gene03554:intron | 30.0% | |
GACAATGAATCATAGATATG+TGG | + | chr3.4:30184043-30184062 | None:intergenic | 30.0% | |
TAAATTTGAGCATAGGGTAA+TGG | - | chr3.4:30182590-30182609 | MS.gene03554:CDS | 30.0% | |
! | CTTTTTCCAAAACTCTGTTT+CGG | + | chr3.4:30182772-30182791 | None:intergenic | 30.0% |
! | GAAAAAGATTCTTTTTCCTG+GGG | - | chr3.4:30182113-30182132 | MS.gene03554:CDS | 30.0% |
! | GCAAGAATTATTTCTCCTAA+TGG | - | chr3.4:30183956-30183975 | MS.gene03554:intron | 30.0% |
! | GCTTTTCAATCAAAGAAAGA+TGG | - | chr3.4:30184625-30184644 | MS.gene03554:CDS | 30.0% |
! | GGAAAAAGATTCTTTTTCCT+GGG | - | chr3.4:30182112-30182131 | MS.gene03554:CDS | 30.0% |
! | TGAATCACTTTGTTCGTTTT+CGG | + | chr3.4:30183666-30183685 | None:intergenic | 30.0% |
!! | ACACATCCATTTCTTTGTTT+TGG | + | chr3.4:30184493-30184512 | None:intergenic | 30.0% |
!! | ATGAAACCATTATTTTGCTG+TGG | + | chr3.4:30184202-30184221 | None:intergenic | 30.0% |
!!! | GTTTGTTGTGTGGTTTTAAT+CGG | + | chr3.4:30182904-30182923 | None:intergenic | 30.0% |
AACAATTCAGCAGCAACATT+GGG | - | chr3.4:30183593-30183612 | MS.gene03554:intron | 35.0% | |
AACCAAGGAACATTCCAAAA+AGG | + | chr3.4:30184340-30184359 | None:intergenic | 35.0% | |
AAGCTGCAAAGAGTTCAATT+TGG | - | chr3.4:30184551-30184570 | MS.gene03554:CDS | 35.0% | |
ACACAACAAATAGATACTCG+TGG | + | chr3.4:30182436-30182455 | None:intergenic | 35.0% | |
ACCAGAAGAACATCAAGAAA+AGG | + | chr3.4:30183242-30183261 | None:intergenic | 35.0% | |
ACCCTGAAATTAAGCTCTTT+GGG | - | chr3.4:30182091-30182110 | MS.gene03554:CDS | 35.0% | |
AGCTGCAAAGAGTTCAATTT+GGG | - | chr3.4:30184552-30184571 | MS.gene03554:CDS | 35.0% | |
AGTTCAATTTGGGAAACACT+TGG | - | chr3.4:30184562-30184581 | MS.gene03554:CDS | 35.0% | |
CAGGACTAATACTTCAGATT+TGG | - | chr3.4:30183325-30183344 | MS.gene03554:intron | 35.0% | |
GAAGTTTCTTCATCTATGGA+AGG | + | chr3.4:30183638-30183657 | None:intergenic | 35.0% | |
GTGATTCTTCTGTTTGCAAA+TGG | + | chr3.4:30184471-30184490 | None:intergenic | 35.0% | |
TAAAATGACATGGGAAATCC+TGG | + | chr3.4:30184310-30184329 | None:intergenic | 35.0% | |
TCAAAATCTATGGAGGAAAG+TGG | - | chr3.4:30184151-30184170 | MS.gene03554:intron | 35.0% | |
TCATTGCCACAGCAAAATAA+TGG | - | chr3.4:30184193-30184212 | MS.gene03554:intron | 35.0% | |
TCCCAAAGAGCTTAATTTCA+GGG | + | chr3.4:30182095-30182114 | None:intergenic | 35.0% | |
TGAAGAAGAAGAAATCGAGA+AGG | - | chr3.4:30182242-30182261 | MS.gene03554:CDS | 35.0% | |
TGAAGATGATGAGTTCCATT+AGG | + | chr3.4:30183974-30183993 | None:intergenic | 35.0% | |
TTCCCAAAGAGCTTAATTTC+AGG | + | chr3.4:30182096-30182115 | None:intergenic | 35.0% | |
TTCTACTGTATAGTGCTCAT+AGG | + | chr3.4:30182993-30183012 | None:intergenic | 35.0% | |
! | ACCTTTTCTTGATGTTCTTC+TGG | - | chr3.4:30183238-30183257 | MS.gene03554:CDS | 35.0% |
! | GGGAAAAAGATTCTTTTTCC+TGG | - | chr3.4:30182111-30182130 | MS.gene03554:CDS | 35.0% |
! | TTACTTCCGAAACAGAGTTT+TGG | - | chr3.4:30182763-30182782 | MS.gene03554:CDS | 35.0% |
!! | GACTGAAATTGTTTGTTGTG+TGG | + | chr3.4:30182914-30182933 | None:intergenic | 35.0% |
!! | GTTCTGAAATTTACCCCTTA+GGG | - | chr3.4:30182670-30182689 | MS.gene03554:CDS | 35.0% |
!! | TGTTCTGAAATTTACCCCTT+AGG | - | chr3.4:30182669-30182688 | MS.gene03554:CDS | 35.0% |
!!! | TCATCTATGGAAGGTGTTTT+CGG | + | chr3.4:30183629-30183648 | None:intergenic | 35.0% |
AAAGCTGAGAACTCTACCAT+TGG | + | chr3.4:30184008-30184027 | None:intergenic | 40.0% | |
AATGAAGGTTTGAATAGGGG+TGG | - | chr3.4:30184592-30184611 | MS.gene03554:CDS | 40.0% | |
AATGGTAGAGTTCTCAGCTT+TGG | - | chr3.4:30184007-30184026 | MS.gene03554:intron | 40.0% | |
ACATTGGAGAGGTTTGAACA+TGG | + | chr3.4:30184657-30184676 | None:intergenic | 40.0% | |
ACTGTATAGTGCTCATAGGA+AGG | + | chr3.4:30182989-30183008 | None:intergenic | 40.0% | |
ACTTATGCTCTTGGATATGC+AGG | - | chr3.4:30183306-30183325 | MS.gene03554:intron | 40.0% | |
ATGGTAGAGTTCTCAGCTTT+GGG | - | chr3.4:30184008-30184027 | MS.gene03554:intron | 40.0% | |
CAACAATTCAGCAGCAACAT+TGG | - | chr3.4:30183592-30183611 | MS.gene03554:intron | 40.0% | |
CTAGTCATACATGGAACTTG+AGG | + | chr3.4:30184226-30184245 | None:intergenic | 40.0% | |
CTCAACGACACTCGAAATAA+TGG | - | chr3.4:30184094-30184113 | MS.gene03554:intron | 40.0% | |
GAACATTCCAAAAAGGAGCA+GGG | + | chr3.4:30184333-30184352 | None:intergenic | 40.0% | |
GAACTCTTTGCAGCTTCATT+TGG | + | chr3.4:30184547-30184566 | None:intergenic | 40.0% | |
GAATAGGGGTGGTATGATTA+AGG | - | chr3.4:30184603-30184622 | MS.gene03554:CDS | 40.0% | |
GACCCTGAAATTAAGCTCTT+TGG | - | chr3.4:30182090-30182109 | MS.gene03554:CDS | 40.0% | |
GTCAAATATACTGAGACAGC+AGG | - | chr3.4:30182931-30182950 | MS.gene03554:CDS | 40.0% | |
GTCAAATGATCTCAATCCTG+TGG | - | chr3.4:30184060-30184079 | MS.gene03554:intron | 40.0% | |
TCAAACCTCTCCAATGTTGA+TGG | - | chr3.4:30184660-30184679 | MS.gene03554:CDS | 40.0% | |
TCAGCATCTTTATCTGCTTC+AGG | + | chr3.4:30183518-30183537 | None:intergenic | 40.0% | |
TCTCAATCCTGTGGAGAAAA+AGG | - | chr3.4:30184069-30184088 | MS.gene03554:intron | 40.0% | |
TGTCAAAGATATTGGACTGC+AGG | - | chr3.4:30183830-30183849 | MS.gene03554:intron | 40.0% | |
! | AAGATTCTTTTTCCTGGGGA+AGG | - | chr3.4:30182117-30182136 | MS.gene03554:CDS | 40.0% |
! | CATTTTACCCTGCTCCTTTT+TGG | - | chr3.4:30184323-30184342 | MS.gene03554:intron | 40.0% |
! | TCTTGAGCGTTGTTGTTGTT+TGG | + | chr3.4:30183692-30183711 | None:intergenic | 40.0% |
! | TTGAGAACCTTTTTCTCCAC+AGG | + | chr3.4:30184079-30184098 | None:intergenic | 40.0% |
!! | TTGAGCATAGGGTAATGGAT+TGG | - | chr3.4:30182595-30182614 | MS.gene03554:CDS | 40.0% |
!!! | CATCTATGGAAGGTGTTTTC+GGG | + | chr3.4:30183628-30183647 | None:intergenic | 40.0% |
!!! | CTCCTTTTTGGAATGTTCCT+TGG | - | chr3.4:30184335-30184354 | MS.gene03554:intron | 40.0% |
AATGACATGGGAAATCCTGG+AGG | + | chr3.4:30184307-30184326 | None:intergenic | 45.0% | |
ACCATGAGAAATGTTCCGGT+CGG | - | chr3.4:30183857-30183876 | MS.gene03554:intron | 45.0% | |
AGGAGCAGGGTAAAATGACA+TGG | + | chr3.4:30184320-30184339 | None:intergenic | 45.0% | |
AGTGATCTAGCTAAAGCTGC+AGG | + | chr3.4:30184691-30184710 | None:intergenic | 45.0% | |
CAAAGATATTGGACTGCAGG+CGG | - | chr3.4:30183833-30183852 | MS.gene03554:intron | 45.0% | |
CATGTATGACTAGTGCTCCT+TGG | - | chr3.4:30184233-30184252 | MS.gene03554:intron | 45.0% | |
CGGAACCATGAGAAATGTTC+CGG | - | chr3.4:30183853-30183872 | MS.gene03554:intron | 45.0% | |
GAACTCCAAGTATAAGGCCA+AGG | + | chr3.4:30184253-30184272 | None:intergenic | 45.0% | |
GCAAGGCGTGTCAAAGATAT+TGG | - | chr3.4:30183822-30183841 | MS.gene03554:intron | 45.0% | |
GGAACATTCCAAAAAGGAGC+AGG | + | chr3.4:30184334-30184353 | None:intergenic | 45.0% | |
GGAGCAGGGTAAAATGACAT+GGG | + | chr3.4:30184319-30184338 | None:intergenic | 45.0% | |
GTGATCTAGCTAAAGCTGCA+GGG | + | chr3.4:30184690-30184709 | None:intergenic | 45.0% | |
GTTAGCCATCAACATTGGAG+AGG | + | chr3.4:30184668-30184687 | None:intergenic | 45.0% | |
GTTGTCGTTCTTGATCTCTG+CGG | + | chr3.4:30183573-30183592 | None:intergenic | 45.0% | |
TGGTGAGGAAAATGTTTCGC+CGG | - | chr3.4:30182158-30182177 | MS.gene03554:CDS | 45.0% | |
! | GGAGATTTCGGACTAGACTT+TGG | + | chr3.4:30184388-30184407 | None:intergenic | 45.0% |
!! | ACTAGACTTTGGAGTTGTCG+CGG | + | chr3.4:30184377-30184396 | None:intergenic | 45.0% |
!! | CAAGGAGCACTAGTCATACA+TGG | + | chr3.4:30184235-30184254 | None:intergenic | 45.0% |
!! | TAGAGTTCTCAGCTTTGGGT+TGG | - | chr3.4:30184012-30184031 | MS.gene03554:intron | 45.0% |
!! | TGGCCTTATACTTGGAGTTC+CGG | - | chr3.4:30184253-30184272 | MS.gene03554:intron | 45.0% |
!!! | ATTTTTTTATAAATTAAAGT+AGG | - | chr3.4:30182270-30182289 | MS.gene03554:CDS | 5.0% |
!!! | TTTTTTGATTAAAAAAATTT+AGG | - | chr3.4:30182712-30182731 | MS.gene03554:CDS | 5.0% |
ACCGACCGGAACATTTCTCA+TGG | + | chr3.4:30183861-30183880 | None:intergenic | 50.0% | |
AGCTCTTATCACTGCTGGTG+AGG | - | chr3.4:30182143-30182162 | MS.gene03554:CDS | 50.0% | |
AGGACACAAAGTTTGTGGCG+AGG | + | chr3.4:30184287-30184306 | None:intergenic | 50.0% | |
AGTCCGAAATCTCCAACGCT+CGG | - | chr3.4:30184394-30184413 | MS.gene03554:intron | 50.0% | |
ATAAGAGCTTCACCTTCCCC+AGG | + | chr3.4:30182132-30182151 | None:intergenic | 50.0% | |
CACGCCTTGCAAAAATAGCG+CGG | + | chr3.4:30183812-30183831 | None:intergenic | 50.0% | |
CCACAAACTTTGTGTCCTCC+AGG | - | chr3.4:30184289-30184308 | MS.gene03554:intron | 50.0% | |
CCTGGAGGACACAAAGTTTG+TGG | + | chr3.4:30184292-30184311 | None:intergenic | 50.0% | |
GGACACAAAGTTTGTGGCGA+GGG | + | chr3.4:30184286-30184305 | None:intergenic | 50.0% | |
GGTGAAGCTCTTATCACTGC+TGG | - | chr3.4:30182138-30182157 | MS.gene03554:CDS | 50.0% | |
TGAGGAAAATGTTTCGCCGG+TGG | - | chr3.4:30182161-30182180 | MS.gene03554:CDS | 50.0% | |
TGCATCAAGAGCCTCAGAGA+TGG | + | chr3.4:30183936-30183955 | None:intergenic | 50.0% | |
TTCTTGATCTCTGCGGCATC+TGG | + | chr3.4:30183566-30183585 | None:intergenic | 50.0% | |
! | GGACACGGGAGTAATTTGTC+TGG | + | chr3.4:30183731-30183750 | None:intergenic | 50.0% |
!! | CTAGACTTTGGAGTTGTCGC+GGG | + | chr3.4:30184376-30184395 | None:intergenic | 50.0% |
!! | GCAGGGTTAGCCATCAACAT+TGG | + | chr3.4:30184673-30184692 | None:intergenic | 50.0% |
!! | GTGCTCCTTGGCCTTATACT+TGG | - | chr3.4:30184245-30184264 | MS.gene03554:intron | 50.0% |
!! | TTCCCGAGCGTTGGAGATTT+CGG | + | chr3.4:30184400-30184419 | None:intergenic | 50.0% |
!!! | TCAGCCGCGCTATTTTTGCA+AGG | - | chr3.4:30183805-30183824 | MS.gene03554:intron | 50.0% |
AACGCTCGGGAAACACTCGA+GGG | - | chr3.4:30184408-30184427 | MS.gene03554:intron | 55.0% | |
AGAAATGTTCCGGTCGGTGC+AGG | - | chr3.4:30183863-30183882 | MS.gene03554:intron | 55.0% | |
GAAATGTTCCGGTCGGTGCA+GGG | - | chr3.4:30183864-30183883 | MS.gene03554:intron | 55.0% | |
GCGCCGGAACTCCAAGTATA+AGG | + | chr3.4:30184259-30184278 | None:intergenic | 55.0% | |
GGAAAATGTTTCGCCGGTGG+CGG | - | chr3.4:30182164-30182183 | MS.gene03554:CDS | 55.0% | |
GGAGGATGAGGCGAAAACCA+AGG | + | chr3.4:30184355-30184374 | None:intergenic | 55.0% | |
GTCCGAAATCTCCAACGCTC+GGG | - | chr3.4:30184395-30184414 | MS.gene03554:intron | 55.0% | |
TCGCCACATCACCATCTCTG+AGG | - | chr3.4:30183922-30183941 | MS.gene03554:intron | 55.0% | |
TTGATCTCTGCGGCATCTGG+TGG | + | chr3.4:30183563-30183582 | None:intergenic | 55.0% | |
! | GAGCCTCAGAGATGGTGATG+TGG | + | chr3.4:30183928-30183947 | None:intergenic | 55.0% |
! | TTTCTTCTCCCTGCACCGAC+CGG | + | chr3.4:30183875-30183894 | None:intergenic | 55.0% |
ATCTCTGCGGCATCTGGTGG+AGG | + | chr3.4:30183560-30183579 | None:intergenic | 60.0% | |
CAACGCTCGGGAAACACTCG+AGG | - | chr3.4:30184407-30184426 | MS.gene03554:intron | 60.0% | |
CTCGAGTGTTTCCCGAGCGT+TGG | + | chr3.4:30184409-30184428 | None:intergenic | 60.0% | |
TCTACATCCATCGCCGCCAC+CGG | + | chr3.4:30182180-30182199 | None:intergenic | 60.0% | |
TTGTGGCGAGGGAATTGCGC+CGG | + | chr3.4:30184275-30184294 | None:intergenic | 60.0% | |
!! | GACTTTGGAGTTGTCGCGGG+AGG | + | chr3.4:30184373-30184392 | None:intergenic | 60.0% |
CGCTGTTGCAGCGTGGACAC+GGG | + | chr3.4:30183745-30183764 | None:intergenic | 65.0% | |
GCGCTGTTGCAGCGTGGACA+CGG | + | chr3.4:30183746-30183765 | None:intergenic | 65.0% | |
GGAGTTGTCGCGGGAGGATG+AGG | + | chr3.4:30184367-30184386 | None:intergenic | 65.0% | |
GTGTCCACGCTGCAACAGCG+CGG | - | chr3.4:30183745-30183764 | MS.gene03554:intron | 65.0% | |
GTGTCCGCGCTGTTGCAGCG+TGG | + | chr3.4:30183752-30183771 | None:intergenic | 70.0% | |
! | TGTTTCGCCGGTGGCGGCGA+TGG | - | chr3.4:30182170-30182189 | MS.gene03554:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.4 | gene | 30182075 | 30184732 | 30182075 | ID=MS.gene03554 |
chr3.4 | mRNA | 30182075 | 30184732 | 30182075 | ID=MS.gene03554.t1;Parent=MS.gene03554 |
chr3.4 | exon | 30184544 | 30184732 | 30184544 | ID=MS.gene03554.t1.exon1;Parent=MS.gene03554.t1 |
chr3.4 | CDS | 30184544 | 30184732 | 30184544 | ID=cds.MS.gene03554.t1;Parent=MS.gene03554.t1 |
chr3.4 | exon | 30182075 | 30183295 | 30182075 | ID=MS.gene03554.t1.exon2;Parent=MS.gene03554.t1 |
chr3.4 | CDS | 30182075 | 30183295 | 30182075 | ID=cds.MS.gene03554.t1;Parent=MS.gene03554.t1 |
Gene Sequence |
Protein sequence |