Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03564.t1 | KEH33323.1 | 86.9 | 482 | 50 | 1 | 1 | 482 | 1 | 469 | 6.70E-240 | 839.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03564.t1 | Q10EL1 | 53.0 | 387 | 151 | 8 | 38 | 404 | 63 | 438 | 1.7e-98 | 361.3 |
| MS.gene03564.t1 | Q10EL1 | 44.9 | 49 | 27 | 0 | 433 | 481 | 649 | 697 | 1.2e-06 | 56.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03564.t1 | A0A072UW95 | 86.9 | 482 | 50 | 1 | 1 | 482 | 1 | 469 | 4.8e-240 | 839.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene03564.t1 | TF | C3H |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03564.t1 | MTR_3g435590 | 86.929 | 482 | 50 | 1 | 1 | 482 | 1 | 469 | 0.0 | 863 |
| MS.gene03564.t1 | MTR_3g029590 | 65.859 | 495 | 105 | 4 | 1 | 431 | 1 | 495 | 0.0 | 561 |
| MS.gene03564.t1 | MTR_3g029590 | 70.588 | 51 | 14 | 1 | 432 | 481 | 631 | 681 | 2.30e-16 | 82.4 |
| MS.gene03564.t1 | MTR_3g435680 | 61.124 | 427 | 94 | 11 | 93 | 482 | 5 | 396 | 5.00e-163 | 466 |
| MS.gene03564.t1 | MTR_7g092070 | 52.248 | 467 | 153 | 8 | 31 | 431 | 33 | 495 | 1.56e-142 | 426 |
| MS.gene03564.t1 | MTR_7g092070 | 40.217 | 92 | 50 | 2 | 395 | 481 | 584 | 675 | 1.86e-11 | 67.0 |
| MS.gene03564.t1 | MTR_0728s0020 | 45.553 | 461 | 170 | 7 | 29 | 421 | 15 | 462 | 3.02e-127 | 384 |
| MS.gene03564.t1 | MTR_1g050438 | 45.534 | 459 | 169 | 7 | 31 | 421 | 1 | 446 | 5.68e-127 | 382 |
| MS.gene03564.t1 | MTR_5g082830 | 49.231 | 325 | 144 | 3 | 43 | 366 | 28 | 332 | 1.24e-103 | 324 |
| MS.gene03564.t1 | MTR_1g075890 | 47.692 | 325 | 160 | 2 | 42 | 366 | 30 | 344 | 2.15e-93 | 296 |
| MS.gene03564.t1 | MTR_5g071070 | 45.658 | 357 | 182 | 4 | 42 | 398 | 32 | 376 | 1.91e-90 | 290 |
| MS.gene03564.t1 | MTR_3g070880 | 44.062 | 320 | 126 | 3 | 43 | 362 | 8 | 274 | 2.43e-87 | 277 |
| MS.gene03564.t1 | MTR_5g071070 | 47.059 | 306 | 150 | 4 | 93 | 398 | 1 | 294 | 1.38e-78 | 257 |
| MS.gene03564.t1 | MTR_3g464260 | 38.720 | 328 | 151 | 5 | 31 | 358 | 11 | 288 | 1.65e-61 | 209 |
| MS.gene03564.t1 | MTR_3g464280 | 35.278 | 360 | 163 | 5 | 47 | 405 | 19 | 309 | 8.97e-53 | 186 |
| MS.gene03564.t1 | MTR_8g102100 | 49.091 | 165 | 77 | 2 | 247 | 404 | 77 | 241 | 1.13e-48 | 172 |
| MS.gene03564.t1 | MTR_6g090380 | 65.421 | 107 | 37 | 0 | 247 | 353 | 99 | 205 | 1.45e-47 | 169 |
| MS.gene03564.t1 | MTR_3g103960 | 53.191 | 141 | 63 | 3 | 241 | 378 | 43 | 183 | 7.95e-46 | 161 |
| MS.gene03564.t1 | MTR_4g078660 | 48.201 | 139 | 66 | 2 | 221 | 353 | 24 | 162 | 1.67e-41 | 150 |
| MS.gene03564.t1 | MTR_2g090605 | 62.136 | 103 | 39 | 0 | 251 | 353 | 77 | 179 | 1.76e-41 | 153 |
| MS.gene03564.t1 | MTR_3g464290 | 63.542 | 96 | 34 | 1 | 230 | 324 | 79 | 174 | 2.85e-36 | 140 |
| MS.gene03564.t1 | MTR_3g464270 | 44.156 | 154 | 84 | 2 | 250 | 401 | 8 | 161 | 1.67e-35 | 135 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03564.t1 | AT2G41900 | 51.693 | 443 | 184 | 9 | 1 | 428 | 1 | 428 | 6.27e-135 | 406 |
| MS.gene03564.t1 | AT5G12850 | 47.765 | 425 | 188 | 7 | 1 | 403 | 1 | 413 | 6.53e-119 | 364 |
| MS.gene03564.t1 | AT2G40140 | 42.928 | 403 | 193 | 9 | 20 | 416 | 6 | 377 | 5.05e-98 | 307 |
| MS.gene03564.t1 | AT2G40140 | 42.928 | 403 | 193 | 9 | 20 | 416 | 6 | 377 | 5.05e-98 | 307 |
| MS.gene03564.t1 | AT3G55980 | 43.077 | 390 | 187 | 6 | 16 | 404 | 3 | 358 | 1.54e-95 | 300 |
| MS.gene03564.t1 | AT3G55980 | 43.333 | 390 | 186 | 6 | 16 | 404 | 70 | 425 | 9.23e-95 | 300 |
| MS.gene03564.t1 | AT5G58620 | 46.933 | 326 | 160 | 4 | 42 | 366 | 11 | 324 | 1.22e-94 | 299 |
| MS.gene03564.t1 | AT5G07500 | 60.156 | 128 | 51 | 0 | 233 | 360 | 34 | 161 | 3.54e-51 | 174 |
| MS.gene03564.t1 | AT2G25900 | 63.551 | 107 | 39 | 0 | 247 | 353 | 86 | 192 | 1.34e-47 | 167 |
| MS.gene03564.t1 | AT2G25900 | 63.551 | 107 | 39 | 0 | 247 | 353 | 86 | 192 | 1.34e-47 | 167 |
| MS.gene03564.t1 | AT4G29190 | 48.023 | 177 | 84 | 3 | 225 | 401 | 54 | 222 | 2.18e-46 | 165 |
| MS.gene03564.t1 | AT2G19810 | 56.589 | 129 | 55 | 1 | 225 | 353 | 53 | 180 | 4.12e-45 | 162 |
| MS.gene03564.t1 | AT1G03790 | 49.091 | 165 | 70 | 4 | 229 | 383 | 64 | 224 | 3.12e-42 | 155 |
| MS.gene03564.t1 | AT5G44260 | 55.556 | 126 | 51 | 2 | 229 | 353 | 42 | 163 | 1.02e-40 | 150 |
Find 107 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGGATGCTGCTACCATTAA+AGG | 0.189515 | 3.4:+30371429 | None:intergenic |
| CAGCTGTAGGTGAACTTTCT+AGG | 0.217092 | 3.4:+30370841 | None:intergenic |
| TCTCCACCTTCATCTGCTTT+AGG | 0.260645 | 3.4:-30371654 | MS.gene03564:CDS |
| CAATTCCTATTTCTAAAATC+AGG | 0.292610 | 3.4:+30370808 | None:intergenic |
| TGAGGACAGAACCCCTTTAA+TGG | 0.295037 | 3.4:-30371442 | MS.gene03564:CDS |
| TTCTGTCCTCAAGAACAATT+TGG | 0.297818 | 3.4:+30371454 | None:intergenic |
| ACCTGGTGTGTCCGTCAAAA+TGG | 0.347353 | 3.4:-30371483 | MS.gene03564:CDS |
| TTCTCATTAGGATGGTAAAA+AGG | 0.349580 | 3.4:+30370880 | None:intergenic |
| CTGTTTCTCACAGCCCCATC+TGG | 0.355429 | 3.4:-30370452 | MS.gene03564:CDS |
| TATATGCTGTTTCGTATATC+AGG | 0.367270 | 3.4:+30370982 | None:intergenic |
| AGTTTATGGGGAACAACAAT+AGG | 0.381243 | 3.4:+30371195 | None:intergenic |
| GCTGCTGAGGAGTGTGTTAA+TGG | 0.382203 | 3.4:-30371129 | MS.gene03564:CDS |
| TCAGGAATTGATGGATCAAT+TGG | 0.382999 | 3.4:+30371000 | None:intergenic |
| TATGCAAGTGGTCTCTTTGA+TGG | 0.384580 | 3.4:-30370502 | MS.gene03564:CDS |
| AGATGAATTTCGCATGTATT+CGG | 0.386064 | 3.4:-30370953 | MS.gene03564:CDS |
| CTCCTTCGAGCATTCTCATT+AGG | 0.386456 | 3.4:+30370868 | None:intergenic |
| TCCGCTGTCATCGTGTGAAA+AGG | 0.389604 | 3.4:-30371097 | MS.gene03564:CDS |
| AGCAGATGCAGCTGATCTAA+TGG | 0.394681 | 3.4:+30370627 | None:intergenic |
| TTTCACGACTTCGAGTTTAT+GGG | 0.395352 | 3.4:+30371182 | None:intergenic |
| GTGAAGAGCCTGATATATCT+TGG | 0.396118 | 3.4:-30370294 | MS.gene03564:CDS |
| CCGCTGTCATCGTGTGAAAA+GGG | 0.399012 | 3.4:-30371096 | MS.gene03564:CDS |
| TCTAAGTGGGGATCCCATAC+TGG | 0.404236 | 3.4:-30370394 | MS.gene03564:CDS |
| CTGATAGTGAACCACGATAA+AGG | 0.407011 | 3.4:+30370572 | None:intergenic |
| GATTGAACCCAAGATATATC+AGG | 0.433709 | 3.4:+30370286 | None:intergenic |
| AGGATGCTGCTACCATTAAA+GGG | 0.438858 | 3.4:+30371430 | None:intergenic |
| CATTGAAATGGCAGCCAGAT+GGG | 0.445961 | 3.4:+30370438 | None:intergenic |
| TTTCGTATATCAGGAATTGA+TGG | 0.454148 | 3.4:+30370991 | None:intergenic |
| GCAGCCATGTCCATGACAAT+AGG | 0.459445 | 3.4:+30370604 | None:intergenic |
| TCAAAGAGACCACTTGCATA+TGG | 0.463420 | 3.4:+30370505 | None:intergenic |
| ATCGTGCATACATTCATGAT+TGG | 0.486993 | 3.4:-30370912 | MS.gene03564:CDS |
| AGGCTTGTGCGATACTGATC+TGG | 0.489915 | 3.4:+30370730 | None:intergenic |
| AACAGACCGACTCATTGAAA+TGG | 0.489972 | 3.4:+30370426 | None:intergenic |
| GGAGACAAAGGCTGTGCAAA+AGG | 0.491457 | 3.4:+30370526 | None:intergenic |
| CCCATACTGGAAAACCTGAT+TGG | 0.492369 | 3.4:-30370381 | MS.gene03564:CDS |
| ATTGTTTCCATGCTGAAAAG+AGG | 0.493457 | 3.4:+30370318 | None:intergenic |
| TGTTAACTCCTGGTCTAAGT+GGG | 0.494253 | 3.4:-30370407 | MS.gene03564:CDS |
| CGCACAAGCCTTTGCAAAGA+GGG | 0.495365 | 3.4:-30370718 | MS.gene03564:CDS |
| CCACCTTCATCTGCTTTAGG+AGG | 0.503254 | 3.4:-30371651 | MS.gene03564:CDS |
| ACAGCTGTGTCGGTAAACTT+TGG | 0.503937 | 3.4:+30371051 | None:intergenic |
| AGAAGCATGTTCAAGTAAGC+TGG | 0.506422 | 3.4:+30371572 | None:intergenic |
| CTGTGCTGCTTCGAGTGGTA+CGG | 0.514258 | 3.4:-30371316 | MS.gene03564:CDS |
| TGAAGAGCCTGATATATCTT+GGG | 0.518053 | 3.4:-30370293 | MS.gene03564:CDS |
| GGAAGAACAATAACATCGAC+TGG | 0.519770 | 3.4:+30371216 | None:intergenic |
| CTGTTAACTCCTGGTCTAAG+TGG | 0.524678 | 3.4:-30370408 | MS.gene03564:CDS |
| AATTCCTATTTCTAAAATCA+GGG | 0.524886 | 3.4:+30370809 | None:intergenic |
| GAAATAGGAATTGCAGACGC+GGG | 0.527252 | 3.4:-30370798 | MS.gene03564:CDS |
| TTTGGAGCCACAGGAGAGGA+TGG | 0.530352 | 3.4:+30371069 | None:intergenic |
| TGAGTCGGTCTGTTAACTCC+TGG | 0.532706 | 3.4:-30370417 | MS.gene03564:CDS |
| TCCGTCAGCGAAAATGACTT+TGG | 0.534652 | 3.4:-30370358 | MS.gene03564:CDS |
| CTTATACTTTCATCTTCAGA+GGG | 0.538685 | 3.4:-30371384 | MS.gene03564:CDS |
| TCATTGAAATGGCAGCCAGA+TGG | 0.539378 | 3.4:+30370437 | None:intergenic |
| CTCATGGAGTATTCGAGACC+TGG | 0.539512 | 3.4:-30370759 | MS.gene03564:CDS |
| AGCTGTAGGTGAACTTTCTA+GGG | 0.540690 | 3.4:+30370842 | None:intergenic |
| ATACTTTCATCTTCAGAGGG+TGG | 0.541631 | 3.4:-30371381 | MS.gene03564:CDS |
| GCTTATACTTTCATCTTCAG+AGG | 0.541886 | 3.4:-30371385 | MS.gene03564:CDS |
| TCGGTAAACTTTGGAGCCAC+AGG | 0.542025 | 3.4:+30371060 | None:intergenic |
| AACTAGTACCCTCTTTGCAA+AGG | 0.543250 | 3.4:+30370710 | None:intergenic |
| TAGAATATCAATACTCCCAC+AGG | 0.547853 | 3.4:+30371410 | None:intergenic |
| TGCTCCTATTGTCATGGACA+TGG | 0.553647 | 3.4:-30370608 | MS.gene03564:CDS |
| CGCTGTCATCGTGTGAAAAG+GGG | 0.555009 | 3.4:-30371095 | MS.gene03564:CDS |
| TTCGAGCATTCTCATTAGGA+TGG | 0.556484 | 3.4:+30370872 | None:intergenic |
| ATACTGATCTGGATGTAGCC+AGG | 0.556939 | 3.4:+30370741 | None:intergenic |
| TTCACGACTTCGAGTTTATG+GGG | 0.558469 | 3.4:+30371183 | None:intergenic |
| TGGCTGCCATTTCAATGAGT+CGG | 0.563486 | 3.4:-30370432 | MS.gene03564:CDS |
| TGTTACATGAAGTCGGCACC+TGG | 0.564048 | 3.4:-30371500 | MS.gene03564:CDS |
| AAAGGCTGTGCAAAAGGTGA+TGG | 0.567762 | 3.4:+30370532 | None:intergenic |
| GTCAGCGAAAATGACTTTGG+TGG | 0.579776 | 3.4:-30370355 | MS.gene03564:CDS |
| TGCATCTGCTCCTATTGTCA+TGG | 0.581920 | 3.4:-30370614 | MS.gene03564:CDS |
| ACATAACCAAATTGTTCTTG+AGG | 0.582470 | 3.4:-30371460 | MS.gene03564:CDS |
| CTATTTCTAAAATCAGGGCA+TGG | 0.583052 | 3.4:+30370814 | None:intergenic |
| AGCAGCACAGTGAAGAGCAG+TGG | 0.584568 | 3.4:+30371329 | None:intergenic |
| AGGGCATGGCACACAGCTGT+AGG | 0.585274 | 3.4:+30370828 | None:intergenic |
| ATTTCGCATGTATTCGGTCA+AGG | 0.587008 | 3.4:-30370947 | MS.gene03564:CDS |
| GGGGTCTCCATCCTCTCCTG+TGG | 0.592440 | 3.4:-30371076 | MS.gene03564:CDS |
| GATCTAATGGAAGCATGCGA+TGG | 0.592544 | 3.4:+30370640 | None:intergenic |
| CCACTTGCATATGGAGACAA+AGG | 0.596961 | 3.4:+30370514 | None:intergenic |
| GAACCTCCTAAAGCAGATGA+AGG | 0.597322 | 3.4:+30371648 | None:intergenic |
| GATATGTGTGAATATGCTCA+TGG | 0.598080 | 3.4:-30370775 | MS.gene03564:CDS |
| ATTGAAATGGCAGCCAGATG+GGG | 0.607183 | 3.4:+30370439 | None:intergenic |
| ATGGGATCCCCACTTAGACC+AGG | 0.609168 | 3.4:+30370399 | None:intergenic |
| TCTCTCAAATAGTGCTGCTG+AGG | 0.612014 | 3.4:-30371142 | MS.gene03564:CDS |
| GCCTCGCTGTTACATGAAGT+CGG | 0.613028 | 3.4:-30371507 | MS.gene03564:CDS |
| GAACAATAACATCGACTGGA+CGG | 0.620884 | 3.4:+30371220 | None:intergenic |
| CCTCCTAAAGCAGATGAAGG+TGG | 0.621591 | 3.4:+30371651 | None:intergenic |
| TAATGGTAGCAGCATCCTGT+GGG | 0.622789 | 3.4:-30371425 | MS.gene03564:CDS |
| TTCAGAACTAACAGCTGTGT+CGG | 0.628333 | 3.4:+30371041 | None:intergenic |
| CCTTTGTCTCCATATGCAAG+TGG | 0.630944 | 3.4:-30370514 | MS.gene03564:CDS |
| GTTAACTCCTGGTCTAAGTG+GGG | 0.631889 | 3.4:-30370406 | MS.gene03564:CDS |
| CTTCACTGTGCTGCTTCGAG+TGG | 0.634753 | 3.4:-30371321 | MS.gene03564:CDS |
| TTAATGGTAGCAGCATCCTG+TGG | 0.634848 | 3.4:-30371426 | MS.gene03564:CDS |
| GCTAATTGAAGGATGTGCGG+TGG | 0.636952 | 3.4:-30371711 | None:intergenic |
| GGGTACTAGTTGTAACCGAA+AGG | 0.639928 | 3.4:-30370698 | MS.gene03564:CDS |
| TAAAGCAGATGAAGGTGGAG+AGG | 0.650587 | 3.4:+30371656 | None:intergenic |
| TGTATGCACGATGACAAAGA+AGG | 0.653054 | 3.4:+30370923 | None:intergenic |
| TCGCACAAGCCTTTGCAAAG+AGG | 0.659587 | 3.4:-30370719 | MS.gene03564:CDS |
| GCCGCAACGAGCCTTTATCG+TGG | 0.660050 | 3.4:-30370583 | MS.gene03564:CDS |
| ATCCTAATGAGAATGCTCGA+AGG | 0.661284 | 3.4:-30370870 | MS.gene03564:CDS |
| AAACTTTGGAGCCACAGGAG+AGG | 0.663839 | 3.4:+30371065 | None:intergenic |
| GCTGAGGAGTGTGTTAATGG+TGG | 0.669732 | 3.4:-30371126 | MS.gene03564:CDS |
| GGATGCTGCTACCATTAAAG+GGG | 0.670718 | 3.4:+30371431 | None:intergenic |
| AAATAGGAATTGCAGACGCG+GGG | 0.674949 | 3.4:-30370797 | MS.gene03564:CDS |
| AGAAATAGGAATTGCAGACG+CGG | 0.678930 | 3.4:-30370799 | MS.gene03564:CDS |
| TCAGCTAATTGAAGGATGTG+CGG | 0.686760 | 3.4:-30371714 | None:intergenic |
| ATACATGCGAAATTCATCTG+TGG | 0.693580 | 3.4:+30370957 | None:intergenic |
| TGGTGCTGACATCAATTGTG+TGG | 0.697527 | 3.4:-30371256 | MS.gene03564:CDS |
| ACCACGATAAAGGCTCGTTG+CGG | 0.726358 | 3.4:+30370582 | None:intergenic |
| GCCGACTTCATGTAACAGCG+AGG | 0.745868 | 3.4:+30371506 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTCCTATTTCTAAAATCA+GGG | + | chr3.4:30371166-30371185 | None:intergenic | 20.0% |
| !!! | ATTGGATATTTTTTCTTTTC+TGG | + | chr3.4:30370957-30370976 | None:intergenic | 20.0% |
| !!! | GAATGATTTTGAACAATTTA+AGG | - | chr3.4:30370425-30370444 | MS.gene03564:CDS | 20.0% |
| !!! | CAATTCCTATTTCTAAAATC+AGG | + | chr3.4:30371167-30371186 | None:intergenic | 25.0% |
| ACATAACCAAATTGTTCTTG+AGG | - | chr3.4:30370512-30370531 | MS.gene03564:CDS | 30.0% | |
| AGATGAATTTCGCATGTATT+CGG | - | chr3.4:30371019-30371038 | MS.gene03564:CDS | 30.0% | |
| CTTATACTTTCATCTTCAGA+GGG | - | chr3.4:30370588-30370607 | MS.gene03564:CDS | 30.0% | |
| TTCTCATTAGGATGGTAAAA+AGG | + | chr3.4:30371095-30371114 | None:intergenic | 30.0% | |
| TTTCGTATATCAGGAATTGA+TGG | + | chr3.4:30370984-30371003 | None:intergenic | 30.0% | |
| ! | GTGGTGTAAATTTTTCTTGT+GGG | - | chr3.4:30370610-30370629 | MS.gene03564:CDS | 30.0% |
| ! | TTTGGTTATGTCCATTTTGA+CGG | + | chr3.4:30370503-30370522 | None:intergenic | 30.0% |
| !! | TATATGCTGTTTCGTATATC+AGG | + | chr3.4:30370993-30371012 | None:intergenic | 30.0% |
| AGTTTATGGGGAACAACAAT+AGG | + | chr3.4:30370780-30370799 | None:intergenic | 35.0% | |
| ATACATGCGAAATTCATCTG+TGG | + | chr3.4:30371018-30371037 | None:intergenic | 35.0% | |
| ATCGTGCATACATTCATGAT+TGG | - | chr3.4:30371060-30371079 | MS.gene03564:CDS | 35.0% | |
| ATTGTTTCCATGCTGAAAAG+AGG | + | chr3.4:30371657-30371676 | None:intergenic | 35.0% | |
| GATATGTGTGAATATGCTCA+TGG | - | chr3.4:30371197-30371216 | MS.gene03564:CDS | 35.0% | |
| GATTGAACCCAAGATATATC+AGG | + | chr3.4:30371689-30371708 | None:intergenic | 35.0% | |
| GCTTATACTTTCATCTTCAG+AGG | - | chr3.4:30370587-30370606 | MS.gene03564:CDS | 35.0% | |
| TAGAATATCAATACTCCCAC+AGG | + | chr3.4:30370565-30370584 | None:intergenic | 35.0% | |
| TGAAGAGCCTGATATATCTT+GGG | - | chr3.4:30371679-30371698 | MS.gene03564:CDS | 35.0% | |
| TTCTGTCCTCAAGAACAATT+TGG | + | chr3.4:30370521-30370540 | None:intergenic | 35.0% | |
| ! | AGATATACCTCTTTTCAGCA+TGG | - | chr3.4:30371647-30371666 | MS.gene03564:CDS | 35.0% |
| ! | GGTGGTGTAAATTTTTCTTG+TGG | - | chr3.4:30370609-30370628 | MS.gene03564:CDS | 35.0% |
| ! | TCAGGAATTGATGGATCAAT+TGG | + | chr3.4:30370975-30370994 | None:intergenic | 35.0% |
| ! | TCTTTTCAGCATGGAAACAA+TGG | - | chr3.4:30371656-30371675 | MS.gene03564:CDS | 35.0% |
| ! | TTTCACGACTTCGAGTTTAT+GGG | + | chr3.4:30370793-30370812 | None:intergenic | 35.0% |
| !! | CATGCCCTGATTTTAGAAAT+AGG | - | chr3.4:30371159-30371178 | MS.gene03564:CDS | 35.0% |
| !! | CTATTTCTAAAATCAGGGCA+TGG | + | chr3.4:30371161-30371180 | None:intergenic | 35.0% |
| !! | GTAAAACTGCTTTTATCAGC+TGG | - | chr3.4:30370696-30370715 | MS.gene03564:CDS | 35.0% |
| !! | TTTTCACGACTTCGAGTTTA+TGG | + | chr3.4:30370794-30370813 | None:intergenic | 35.0% |
| AACTAGTACCCTCTTTGCAA+AGG | + | chr3.4:30371265-30371284 | None:intergenic | 40.0% | |
| AGAAATAGGAATTGCAGACG+CGG | - | chr3.4:30371173-30371192 | MS.gene03564:CDS | 40.0% | |
| AGCTGTAGGTGAACTTTCTA+GGG | + | chr3.4:30371133-30371152 | None:intergenic | 40.0% | |
| AGGATGCTGCTACCATTAAA+GGG | + | chr3.4:30370545-30370564 | None:intergenic | 40.0% | |
| AGGATGGTAAAAAGGACACT+CGG | + | chr3.4:30371087-30371106 | None:intergenic | 40.0% | |
| ATACTTTCATCTTCAGAGGG+TGG | - | chr3.4:30370591-30370610 | MS.gene03564:CDS | 40.0% | |
| ATCCTAATGAGAATGCTCGA+AGG | - | chr3.4:30371102-30371121 | MS.gene03564:CDS | 40.0% | |
| ATTTCGCATGTATTCGGTCA+AGG | - | chr3.4:30371025-30371044 | MS.gene03564:CDS | 40.0% | |
| GGAAGAACAATAACATCGAC+TGG | + | chr3.4:30370759-30370778 | None:intergenic | 40.0% | |
| GTGAAGAGCCTGATATATCT+TGG | - | chr3.4:30371678-30371697 | MS.gene03564:CDS | 40.0% | |
| TATGCAAGTGGTCTCTTTGA+TGG | - | chr3.4:30371470-30371489 | MS.gene03564:CDS | 40.0% | |
| TCAAAGAGACCACTTGCATA+TGG | + | chr3.4:30371470-30371489 | None:intergenic | 40.0% | |
| TGTATGCACGATGACAAAGA+AGG | + | chr3.4:30371052-30371071 | None:intergenic | 40.0% | |
| TGTTAACTCCTGGTCTAAGT+GGG | - | chr3.4:30371565-30371584 | MS.gene03564:CDS | 40.0% | |
| TTCAGAACTAACAGCTGTGT+CGG | + | chr3.4:30370934-30370953 | None:intergenic | 40.0% | |
| TTCGAGCATTCTCATTAGGA+TGG | + | chr3.4:30371103-30371122 | None:intergenic | 40.0% | |
| ! | AACAGACCGACTCATTGAAA+TGG | + | chr3.4:30371549-30371568 | None:intergenic | 40.0% |
| ! | ACCAATCAGGTTTTCCAGTA+TGG | + | chr3.4:30371595-30371614 | None:intergenic | 40.0% |
| ! | AGAAGCATGTTCAAGTAAGC+TGG | + | chr3.4:30370403-30370422 | None:intergenic | 40.0% |
| ! | CCAATCAGGTTTTCCAGTAT+GGG | + | chr3.4:30371594-30371613 | None:intergenic | 40.0% |
| ! | CTGATAGTGAACCACGATAA+AGG | + | chr3.4:30371403-30371422 | None:intergenic | 40.0% |
| ! | GAACAATAACATCGACTGGA+CGG | + | chr3.4:30370755-30370774 | None:intergenic | 40.0% |
| ! | GTGCAAAAAAGCACACCTTT+CGG | + | chr3.4:30371292-30371311 | None:intergenic | 40.0% |
| ! | TTCACGACTTCGAGTTTATG+GGG | + | chr3.4:30370792-30370811 | None:intergenic | 40.0% |
| !! | ACCAAAGTCATTTTCGCTGA+CGG | + | chr3.4:30371618-30371637 | None:intergenic | 40.0% |
| AAAGGCTGTGCAAAAGGTGA+TGG | + | chr3.4:30371443-30371462 | None:intergenic | 45.0% | |
| AAATAGGAATTGCAGACGCG+GGG | - | chr3.4:30371175-30371194 | MS.gene03564:CDS | 45.0% | |
| AGCAGATGCAGCTGATCTAA+TGG | + | chr3.4:30371348-30371367 | None:intergenic | 45.0% | |
| ATACTGATCTGGATGTAGCC+AGG | + | chr3.4:30371234-30371253 | None:intergenic | 45.0% | |
| ATTGAAATGGCAGCCAGATG+GGG | + | chr3.4:30371536-30371555 | None:intergenic | 45.0% | |
| CAGCTGTAGGTGAACTTTCT+AGG | + | chr3.4:30371134-30371153 | None:intergenic | 45.0% | |
| CAGGATGCTGCTACCATTAA+AGG | + | chr3.4:30370546-30370565 | None:intergenic | 45.0% | |
| CATTGAAATGGCAGCCAGAT+GGG | + | chr3.4:30371537-30371556 | None:intergenic | 45.0% | |
| CCACTTGCATATGGAGACAA+AGG | + | chr3.4:30371461-30371480 | None:intergenic | 45.0% | |
| CCCATACTGGAAAACCTGAT+TGG | - | chr3.4:30371591-30371610 | MS.gene03564:CDS | 45.0% | |
| CCTTTGTCTCCATATGCAAG+TGG | - | chr3.4:30371458-30371477 | MS.gene03564:CDS | 45.0% | |
| CTCCTTCGAGCATTCTCATT+AGG | + | chr3.4:30371107-30371126 | None:intergenic | 45.0% | |
| CTGTTAACTCCTGGTCTAAG+TGG | - | chr3.4:30371564-30371583 | MS.gene03564:CDS | 45.0% | |
| GAAATAGGAATTGCAGACGC+GGG | - | chr3.4:30371174-30371193 | MS.gene03564:CDS | 45.0% | |
| GAACCTCCTAAAGCAGATGA+AGG | + | chr3.4:30370327-30370346 | None:intergenic | 45.0% | |
| GGATGCTGCTACCATTAAAG+GGG | + | chr3.4:30370544-30370563 | None:intergenic | 45.0% | |
| GGGTACTAGTTGTAACCGAA+AGG | - | chr3.4:30371274-30371293 | MS.gene03564:CDS | 45.0% | |
| GTCAGCGAAAATGACTTTGG+TGG | - | chr3.4:30371617-30371636 | MS.gene03564:CDS | 45.0% | |
| GTTAACTCCTGGTCTAAGTG+GGG | - | chr3.4:30371566-30371585 | MS.gene03564:CDS | 45.0% | |
| TAAAGCAGATGAAGGTGGAG+AGG | + | chr3.4:30370319-30370338 | None:intergenic | 45.0% | |
| TAATGGTAGCAGCATCCTGT+GGG | - | chr3.4:30370547-30370566 | MS.gene03564:CDS | 45.0% | |
| TCATTGAAATGGCAGCCAGA+TGG | + | chr3.4:30371538-30371557 | None:intergenic | 45.0% | |
| TCCGTCAGCGAAAATGACTT+TGG | - | chr3.4:30371614-30371633 | MS.gene03564:CDS | 45.0% | |
| TCTCCACCTTCATCTGCTTT+AGG | - | chr3.4:30370318-30370337 | MS.gene03564:CDS | 45.0% | |
| TGAGGACAGAACCCCTTTAA+TGG | - | chr3.4:30370530-30370549 | MS.gene03564:CDS | 45.0% | |
| TGCATCTGCTCCTATTGTCA+TGG | - | chr3.4:30371358-30371377 | MS.gene03564:CDS | 45.0% | |
| TGCTCCTATTGTCATGGACA+TGG | - | chr3.4:30371364-30371383 | MS.gene03564:CDS | 45.0% | |
| TTAATGGTAGCAGCATCCTG+TGG | - | chr3.4:30370546-30370565 | MS.gene03564:CDS | 45.0% | |
| ! | ACAGCTGTGTCGGTAAACTT+TGG | + | chr3.4:30370924-30370943 | None:intergenic | 45.0% |
| ! | GATCTAATGGAAGCATGCGA+TGG | + | chr3.4:30371335-30371354 | None:intergenic | 45.0% |
| ! | TCTCTCAAATAGTGCTGCTG+AGG | - | chr3.4:30370830-30370849 | MS.gene03564:CDS | 45.0% |
| ! | TGGCTGCCATTTCAATGAGT+CGG | - | chr3.4:30371540-30371559 | MS.gene03564:CDS | 45.0% |
| !! | TGGTGCTGACATCAATTGTG+TGG | - | chr3.4:30370716-30370735 | MS.gene03564:CDS | 45.0% |
| ACCACGATAAAGGCTCGTTG+CGG | + | chr3.4:30371393-30371412 | None:intergenic | 50.0% | |
| ACCTGGTGTGTCCGTCAAAA+TGG | - | chr3.4:30370489-30370508 | MS.gene03564:CDS | 50.0% | |
| AGGCTTGTGCGATACTGATC+TGG | + | chr3.4:30371245-30371264 | None:intergenic | 50.0% | |
| CCGCTGTCATCGTGTGAAAA+GGG | - | chr3.4:30370876-30370895 | MS.gene03564:CDS | 50.0% | |
| CCTCCTAAAGCAGATGAAGG+TGG | + | chr3.4:30370324-30370343 | None:intergenic | 50.0% | |
| CGCACAAGCCTTTGCAAAGA+GGG | - | chr3.4:30371254-30371273 | MS.gene03564:CDS | 50.0% | |
| CGCTGTCATCGTGTGAAAAG+GGG | - | chr3.4:30370877-30370896 | MS.gene03564:CDS | 50.0% | |
| GCAGCCATGTCCATGACAAT+AGG | + | chr3.4:30371371-30371390 | None:intergenic | 50.0% | |
| GCCTCGCTGTTACATGAAGT+CGG | - | chr3.4:30370465-30370484 | MS.gene03564:CDS | 50.0% | |
| GGAGACAAAGGCTGTGCAAA+AGG | + | chr3.4:30371449-30371468 | None:intergenic | 50.0% | |
| TCCGCTGTCATCGTGTGAAA+AGG | - | chr3.4:30370875-30370894 | MS.gene03564:CDS | 50.0% | |
| TCGCACAAGCCTTTGCAAAG+AGG | - | chr3.4:30371253-30371272 | MS.gene03564:CDS | 50.0% | |
| TCTAAGTGGGGATCCCATAC+TGG | - | chr3.4:30371578-30371597 | MS.gene03564:CDS | 50.0% | |
| TGAGTCGGTCTGTTAACTCC+TGG | - | chr3.4:30371555-30371574 | MS.gene03564:CDS | 50.0% | |
| TGTTACATGAAGTCGGCACC+TGG | - | chr3.4:30370472-30370491 | MS.gene03564:CDS | 50.0% | |
| ! | CCACCTTCATCTGCTTTAGG+AGG | - | chr3.4:30370321-30370340 | MS.gene03564:CDS | 50.0% |
| ! | CCCTTTTCACACGATGACAG+CGG | + | chr3.4:30370879-30370898 | None:intergenic | 50.0% |
| ! | CTCATGGAGTATTCGAGACC+TGG | - | chr3.4:30371213-30371232 | MS.gene03564:CDS | 50.0% |
| ! | GCTGAGGAGTGTGTTAATGG+TGG | - | chr3.4:30370846-30370865 | MS.gene03564:CDS | 50.0% |
| ! | GCTGCTGAGGAGTGTGTTAA+TGG | - | chr3.4:30370843-30370862 | MS.gene03564:CDS | 50.0% |
| !! | AAACTTTGGAGCCACAGGAG+AGG | + | chr3.4:30370910-30370929 | None:intergenic | 50.0% |
| !! | TCCATTTTGACGGACACACC+AGG | + | chr3.4:30370493-30370512 | None:intergenic | 50.0% |
| !! | TCGGTAAACTTTGGAGCCAC+AGG | + | chr3.4:30370915-30370934 | None:intergenic | 50.0% |
| !! | TTTTCGCTGACGGACCAATC+AGG | + | chr3.4:30371608-30371627 | None:intergenic | 50.0% |
| AGCAGCACAGTGAAGAGCAG+TGG | + | chr3.4:30370646-30370665 | None:intergenic | 55.0% | |
| ATGGGATCCCCACTTAGACC+AGG | + | chr3.4:30371576-30371595 | None:intergenic | 55.0% | |
| ! | CTGTTTCTCACAGCCCCATC+TGG | - | chr3.4:30371520-30371539 | MS.gene03564:CDS | 55.0% |
| ! | GCCGACTTCATGTAACAGCG+AGG | + | chr3.4:30370469-30370488 | None:intergenic | 55.0% |
| ! | TTTGGAGCCACAGGAGAGGA+TGG | + | chr3.4:30370906-30370925 | None:intergenic | 55.0% |
| !! | CTGTGCTGCTTCGAGTGGTA+CGG | - | chr3.4:30370656-30370675 | MS.gene03564:CDS | 55.0% |
| !! | CTTCACTGTGCTGCTTCGAG+TGG | - | chr3.4:30370651-30370670 | MS.gene03564:CDS | 55.0% |
| AGGGCATGGCACACAGCTGT+AGG | + | chr3.4:30371147-30371166 | None:intergenic | 60.0% | |
| GCCGCAACGAGCCTTTATCG+TGG | - | chr3.4:30371389-30371408 | MS.gene03564:CDS | 60.0% | |
| GGGGTCTCCATCCTCTCCTG+TGG | - | chr3.4:30370896-30370915 | MS.gene03564:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 30370273 | 30371721 | 30370273 | ID=MS.gene03564 |
| chr3.4 | mRNA | 30370273 | 30371721 | 30370273 | ID=MS.gene03564.t1;Parent=MS.gene03564 |
| chr3.4 | exon | 30370273 | 30371721 | 30370273 | ID=MS.gene03564.t1.exon1;Parent=MS.gene03564.t1 |
| chr3.4 | CDS | 30370273 | 30371721 | 30370273 | ID=cds.MS.gene03564.t1;Parent=MS.gene03564.t1 |
| Gene Sequence |
| Protein sequence |
