Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035651.t1 | XP_003610239.2 | 94 | 265 | 16 | 0 | 1 | 265 | 1 | 265 | 3.10E-138 | 501.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035651.t1 | G7JEC2 | 94.0 | 265 | 16 | 0 | 1 | 265 | 1 | 265 | 2.2e-138 | 501.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene035651.t1 | TR | GNAT |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035651.t1 | MTR_4g129490 | 93.962 | 265 | 16 | 0 | 1 | 265 | 1 | 265 | 0.0 | 518 |
| MS.gene035651.t1 | MTR_2g041620 | 29.255 | 188 | 108 | 5 | 58 | 236 | 106 | 277 | 5.49e-13 | 67.8 |
| MS.gene035651.t1 | MTR_2g041620 | 29.255 | 188 | 108 | 5 | 58 | 236 | 106 | 277 | 5.73e-13 | 67.8 |
| MS.gene035651.t1 | MTR_2g041620 | 29.255 | 188 | 108 | 5 | 58 | 236 | 94 | 265 | 7.58e-13 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035651.t1 | AT4G28030 | 64.831 | 236 | 83 | 0 | 27 | 262 | 31 | 266 | 5.81e-115 | 331 |
| MS.gene035651.t1 | AT4G28030 | 61.017 | 236 | 81 | 1 | 27 | 262 | 31 | 255 | 2.03e-103 | 301 |
| MS.gene035651.t1 | AT2G06025 | 30.481 | 187 | 107 | 4 | 58 | 236 | 95 | 266 | 2.79e-16 | 77.0 |
| MS.gene035651.t1 | AT2G06025 | 30.481 | 187 | 107 | 4 | 58 | 236 | 95 | 266 | 2.79e-16 | 77.0 |
| MS.gene035651.t1 | AT2G06025 | 30.481 | 187 | 107 | 4 | 58 | 236 | 95 | 266 | 2.79e-16 | 77.0 |
Find 48 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCACTTAAGGAGCGTGTTTC+AGG | 0.154494 | 8.1:-3471490 | MS.gene035651:CDS |
| CAAAGTCAGTTGCTCGTAAT+TGG | 0.193463 | 8.1:-3470629 | MS.gene035651:CDS |
| CTTTCTACGATGATGAATTC+TGG | 0.240043 | 8.1:-3471762 | MS.gene035651:CDS |
| TTCATGTACAATTTCTTTGC+TGG | 0.253198 | 8.1:+3468749 | None:intergenic |
| GTTAATGCAGAATTTGAAAA+TGG | 0.275846 | 8.1:+3471886 | None:intergenic |
| AGGATTGAAATTGAATTCTA+AGG | 0.285749 | 8.1:+3471848 | None:intergenic |
| CGTAAGTGTCTGGACGAAAT+TGG | 0.337880 | 8.1:+3471707 | None:intergenic |
| GCTAGAGAGTTGCACAGAAA+TGG | 0.349757 | 8.1:-3470678 | MS.gene035651:CDS |
| AAAGTCAGTTGCTCGTAATT+GGG | 0.384466 | 8.1:-3470628 | MS.gene035651:CDS |
| AGTCTTCCTGATGAAATTGT+AGG | 0.385815 | 8.1:-3471187 | MS.gene035651:CDS |
| TGATTTATGTTCTTCATGTA+AGG | 0.404309 | 8.1:-3471392 | MS.gene035651:intron |
| ACGTGAGTTTGAAGCACTTA+AGG | 0.420143 | 8.1:-3471503 | MS.gene035651:CDS |
| AATGGAGAAGATGAATGAAT+TGG | 0.432279 | 8.1:+3471904 | None:intergenic |
| TTTCTACGATGATGAATTCT+GGG | 0.435140 | 8.1:-3471761 | MS.gene035651:CDS |
| CTAGAGAGTTGCACAGAAAT+GGG | 0.439454 | 8.1:-3470677 | MS.gene035651:CDS |
| ACTTGGACTCCGTAAGTGTC+TGG | 0.451152 | 8.1:+3471697 | None:intergenic |
| TTCATCCCTACAATTTCATC+AGG | 0.451868 | 8.1:+3471181 | None:intergenic |
| CAATTTCGTCCAGACACTTA+CGG | 0.474222 | 8.1:-3471706 | MS.gene035651:CDS |
| AGAAACCTTGCCTGCCATGC+AGG | 0.496588 | 8.1:+3468698 | None:intergenic |
| GGAGAAGATGAATGAATTGG+AGG | 0.499020 | 8.1:+3471907 | None:intergenic |
| ATTCTGCTAGTGGAGAAGAC+AGG | 0.503889 | 8.1:-3471246 | MS.gene035651:CDS |
| AATGTTTATGGAAGAAGCAT+AGG | 0.510788 | 8.1:+3471828 | None:intergenic |
| GGAGAAGACAGGGTTGTAGT+TGG | 0.511921 | 8.1:-3471235 | MS.gene035651:CDS |
| CTTTGCTGGTTCATTGTCAA+CGG | 0.514602 | 8.1:+3468763 | None:intergenic |
| CACTTAAGGAGCGTGTTTCA+GGG | 0.519287 | 8.1:-3471489 | MS.gene035651:CDS |
| CTAGTGGAGCTGATACTACA+AGG | 0.523464 | 8.1:-3470725 | MS.gene035651:CDS |
| AGAAATTGTACATGAAGAGC+GGG | 0.527874 | 8.1:-3468742 | MS.gene035651:CDS |
| GAGTGATGAACCTGCATGGC+AGG | 0.529229 | 8.1:-3468708 | MS.gene035651:CDS |
| ATGAACCTGCATGGCAGGCA+AGG | 0.531331 | 8.1:-3468703 | MS.gene035651:CDS |
| TTAGGATCATGCTAAGTACT+TGG | 0.533106 | 8.1:-3471530 | MS.gene035651:intron |
| GTCTGGACGAAATTGGTTGA+AGG | 0.533997 | 8.1:+3471714 | None:intergenic |
| GCGAAGACTTCTGCTATGGA+TGG | 0.537747 | 8.1:-3468666 | MS.gene035651:CDS |
| ATCCATAGCAGAAGTCTTCG+CGG | 0.537820 | 8.1:+3468668 | None:intergenic |
| AAGAAATTGTACATGAAGAG+CGG | 0.548993 | 8.1:-3468743 | MS.gene035651:CDS |
| GACCGCGAAGACTTCTGCTA+TGG | 0.554635 | 8.1:-3468670 | MS.gene035651:CDS |
| AGGCTAGATAAATGTGACAT+AGG | 0.565192 | 8.1:+3471421 | None:intergenic |
| AGAGTTGCACAGAAATGGGT+TGG | 0.578468 | 8.1:-3470673 | MS.gene035651:CDS |
| AAGTCAGTTGCTCGTAATTG+GGG | 0.584670 | 8.1:-3470627 | MS.gene035651:intron |
| GTCTTCCTGATGAAATTGTA+GGG | 0.587974 | 8.1:-3471186 | MS.gene035651:CDS |
| AAGAACATAAATCATCATAG+AGG | 0.592116 | 8.1:+3471401 | None:intergenic |
| CGAAGACTTCTGCTATGGAT+GGG | 0.593997 | 8.1:-3468665 | MS.gene035651:CDS |
| TTCTGCTAGTGGAGAAGACA+GGG | 0.600017 | 8.1:-3471245 | MS.gene035651:CDS |
| GTTCATTGTCAACGGCAACA+TGG | 0.600217 | 8.1:+3468771 | None:intergenic |
| GAAGGAACGAACACGAAGAG+AGG | 0.628307 | 8.1:+3471732 | None:intergenic |
| TTCAGCGATTGTGATCAAAG+AGG | 0.684752 | 8.1:+3471786 | None:intergenic |
| TAGTGGAGCTGATACTACAA+GGG | 0.712956 | 8.1:-3470724 | MS.gene035651:CDS |
| AATTGTAGGGATGAAGCCAG+AGG | 0.725736 | 8.1:-3471173 | MS.gene035651:intron |
| ATGAGAGTGATGAACCTGCA+TGG | 0.752863 | 8.1:-3468712 | MS.gene035651:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTGAAAGAAAAAAAA+TGG | + | chr8.1:3468928-3468947 | None:intergenic | 10.0% |
| !! | AATATTCATAACTATTATAT+TGG | - | chr8.1:3470889-3470908 | MS.gene035651:intron | 10.0% |
| !! | TGTAATTTATATTTGTTTAT+CGG | - | chr8.1:3469258-3469277 | MS.gene035651:intron | 10.0% |
| !! | TTATGAATATTGAAATTATT+TGG | + | chr8.1:3470880-3470899 | None:intergenic | 10.0% |
| !! | TAAAACATTATACAATTTGA+TGG | + | chr8.1:3469833-3469852 | None:intergenic | 15.0% |
| !!! | AATATTCAGAACTTTTATAT+TGG | - | chr8.1:3470595-3470614 | MS.gene035651:intron | 15.0% |
| !!! | ATTAGCTATTTTTATAACAA+AGG | - | chr8.1:3469535-3469554 | MS.gene035651:intron | 15.0% |
| !! | AAAAGAAAATCTAATCAACT+AGG | + | chr8.1:3471513-3471532 | None:intergenic | 20.0% |
| !! | AAAGAAAATCTAATCAACTA+GGG | + | chr8.1:3471512-3471531 | None:intergenic | 20.0% |
| !! | ATGCTATCTTAAAATATAAC+TGG | + | chr8.1:3471148-3471167 | None:intergenic | 20.0% |
| !! | TGATTAAATTGACCAAAATT+AGG | + | chr8.1:3470490-3470509 | None:intergenic | 20.0% |
| !! | TTGGTCAATTTAATCATTAT+TGG | - | chr8.1:3470494-3470513 | MS.gene035651:intron | 20.0% |
| !! | TTTCCATTGAATTAAAATCA+AGG | + | chr8.1:3469231-3469250 | None:intergenic | 20.0% |
| !!! | AATTGTTCATATATTTGTTG+CGG | - | chr8.1:3471615-3471634 | MS.gene035651:intron | 20.0% |
| !!! | CATGCAATATTTTGATTAAT+AGG | + | chr8.1:3470790-3470809 | None:intergenic | 20.0% |
| !!! | TAGTTCTTTTGTAAATAGTA+GGG | - | chr8.1:3471048-3471067 | MS.gene035651:intron | 20.0% |
| !!! | TTAGTTCTTTTGTAAATAGT+AGG | - | chr8.1:3471047-3471066 | MS.gene035651:intron | 20.0% |
| !!! | TTTCCTTGATTTTAATTCAA+TGG | - | chr8.1:3469225-3469244 | MS.gene035651:intron | 20.0% |
| ! | AACATTATACAATTTGATGG+AGG | + | chr8.1:3469830-3469849 | None:intergenic | 25.0% |
| ! | AACCAAATTTCATATGATCT+TGG | - | chr8.1:3471256-3471275 | MS.gene035651:intron | 25.0% |
| ! | AAGAAAATCTAATCAACTAG+GGG | + | chr8.1:3471511-3471530 | None:intergenic | 25.0% |
| ! | AAGAACATAAATCATCATAG+AGG | + | chr8.1:3469188-3469207 | None:intergenic | 25.0% |
| ! | AATACAAATGGTTAGGATTA+AGG | + | chr8.1:3470190-3470209 | None:intergenic | 25.0% |
| ! | ACATTTCTTAAACCAAAAAG+TGG | - | chr8.1:3471741-3471760 | MS.gene035651:CDS | 25.0% |
| ! | AGGATTGAAATTGAATTCTA+AGG | + | chr8.1:3468741-3468760 | None:intergenic | 25.0% |
| ! | ATCTACAGTTCATGAAAAAA+TGG | - | chr8.1:3471188-3471207 | MS.gene035651:CDS | 25.0% |
| ! | ATTACCAATTAGATTCTATC+AGG | - | chr8.1:3470070-3470089 | MS.gene035651:intron | 25.0% |
| ! | GAATGTATAAAAAATACCTC+TGG | + | chr8.1:3469432-3469451 | None:intergenic | 25.0% |
| ! | GTTAATGCAGAATTTGAAAA+TGG | + | chr8.1:3468703-3468722 | None:intergenic | 25.0% |
| ! | TATATTTGTTTATCGGTCTT+TGG | - | chr8.1:3469265-3469284 | MS.gene035651:intron | 25.0% |
| ! | TATTCATGAGTATATGAACT+AGG | - | chr8.1:3471681-3471700 | MS.gene035651:intron | 25.0% |
| ! | TGATAGAATCTAATTGGTAA+TGG | + | chr8.1:3470071-3470090 | None:intergenic | 25.0% |
| ! | TGATTTATGTTCTTCATGTA+AGG | - | chr8.1:3469194-3469213 | MS.gene035651:intron | 25.0% |
| ! | TGTTCCAAATTGATAAACAA+TGG | - | chr8.1:3471295-3471314 | MS.gene035651:intron | 25.0% |
| ! | TTACCAATTAGATTCTATCA+GGG | - | chr8.1:3470071-3470090 | MS.gene035651:intron | 25.0% |
| ! | TTCTACATGACAATGAATAT+CGG | - | chr8.1:3471718-3471737 | MS.gene035651:CDS | 25.0% |
| ! | TTGAACTTGATTAGATATCA+GGG | - | chr8.1:3470154-3470173 | MS.gene035651:intron | 25.0% |
| !! | AATTTAGTTCAATACAGTTC+CGG | + | chr8.1:3471459-3471478 | None:intergenic | 25.0% |
| !! | AGACTTTCATTGTTTTCATT+AGG | - | chr8.1:3470715-3470734 | MS.gene035651:CDS | 25.0% |
| !! | ATTTTATAGTATTCTGCTAG+TGG | - | chr8.1:3469330-3469349 | MS.gene035651:intron | 25.0% |
| !! | GAAAATTGATAACTCTTCTA+TGG | - | chr8.1:3469783-3469802 | MS.gene035651:intron | 25.0% |
| !! | TAAGTACCAAATCCTTTTAA+AGG | + | chr8.1:3470130-3470149 | None:intergenic | 25.0% |
| !! | TTGTATAATGTTTTACTGTC+AGG | - | chr8.1:3469838-3469857 | MS.gene035651:intron | 25.0% |
| !!! | AGACTTTAATTGTTTTGAGT+AGG | - | chr8.1:3470426-3470445 | MS.gene035651:intron | 25.0% |
| !!! | ATTTTGAAATCTGTTGACAA+TGG | + | chr8.1:3471332-3471351 | None:intergenic | 25.0% |
| !!! | GACTTTAATTGTTTTGAGTA+GGG | - | chr8.1:3470427-3470446 | MS.gene035651:intron | 25.0% |
| AAGAAATTGTACATGAAGAG+CGG | - | chr8.1:3471843-3471862 | MS.gene035651:CDS | 30.0% | |
| AAGCACTTAAGAAACTGTTT+GGG | + | chr8.1:3469684-3469703 | None:intergenic | 30.0% | |
| AATGGAGAAGATGAATGAAT+TGG | + | chr8.1:3468685-3468704 | None:intergenic | 30.0% | |
| ATCATCCAAAACAAGCTTAA+GGG | + | chr8.1:3469743-3469762 | None:intergenic | 30.0% | |
| ATTCCCTGATAGAATCTAAT+TGG | + | chr8.1:3470077-3470096 | None:intergenic | 30.0% | |
| ATTTCCCGTATCAATACAAA+TGG | + | chr8.1:3470202-3470221 | None:intergenic | 30.0% | |
| CGTACCATTGTTTATCAATT+TGG | + | chr8.1:3471302-3471321 | None:intergenic | 30.0% | |
| CTTTATATATGATCCATGCT+AGG | - | chr8.1:3470348-3470367 | MS.gene035651:intron | 30.0% | |
| GACCAAGATCATATGAAATT+TGG | + | chr8.1:3471261-3471280 | None:intergenic | 30.0% | |
| GTTGAACTTGATTAGATATC+AGG | - | chr8.1:3470153-3470172 | MS.gene035651:intron | 30.0% | |
| GTTTGGATTGTGATAAAAGA+TGG | - | chr8.1:3469009-3469028 | MS.gene035651:intron | 30.0% | |
| TAAGACTTCCTAATTATCAC+TGG | + | chr8.1:3470814-3470833 | None:intergenic | 30.0% | |
| TAAGCACTTAAGAAACTGTT+TGG | + | chr8.1:3469685-3469704 | None:intergenic | 30.0% | |
| TAGGGTAACTATCATAATCA+TGG | - | chr8.1:3471066-3471085 | MS.gene035651:intron | 30.0% | |
| TGATTAATAGGACCCAAATT+TGG | + | chr8.1:3470778-3470797 | None:intergenic | 30.0% | |
| TTAGCTACTGAATTGCAAAA+GGG | - | chr8.1:3468983-3469002 | MS.gene035651:intron | 30.0% | |
| TTCATGTACAATTTCTTTGC+TGG | + | chr8.1:3471840-3471859 | None:intergenic | 30.0% | |
| TTTAGCTACTGAATTGCAAA+AGG | - | chr8.1:3468982-3469001 | MS.gene035651:intron | 30.0% | |
| TTTCTACGATGATGAATTCT+GGG | - | chr8.1:3468825-3468844 | MS.gene035651:intron | 30.0% | |
| ! | AAATTGTTTTCTCCGATGTT+TGG | + | chr8.1:3471567-3471586 | None:intergenic | 30.0% |
| ! | AACATCGGAGAAAACAATTT+TGG | - | chr8.1:3471567-3471586 | MS.gene035651:intron | 30.0% |
| ! | AATGTTTATGGAAGAAGCAT+AGG | + | chr8.1:3468761-3468780 | None:intergenic | 30.0% |
| ! | ATCAATAAGACTCATTTTGC+AGG | + | chr8.1:3470638-3470657 | None:intergenic | 30.0% |
| ! | CCTAACCATTTGTATTGATA+CGG | - | chr8.1:3470194-3470213 | MS.gene035651:intron | 30.0% |
| ! | CTAACCATTTGTATTGATAC+GGG | - | chr8.1:3470195-3470214 | MS.gene035651:intron | 30.0% |
| ! | CTTATTGATGACAGTAGTAA+TGG | - | chr8.1:3470649-3470668 | MS.gene035651:CDS | 30.0% |
| ! | GATCTAGGTTTGGTTATATT+TGG | - | chr8.1:3471394-3471413 | MS.gene035651:CDS | 30.0% |
| ! | GCATAAATAGACCATTTTCA+AGG | + | chr8.1:3470027-3470046 | None:intergenic | 30.0% |
| ! | TCAATAAGACTCATTTTGCA+GGG | + | chr8.1:3470637-3470656 | None:intergenic | 30.0% |
| ! | TTTACCTACTCACCTAATTT+TGG | - | chr8.1:3470475-3470494 | MS.gene035651:intron | 30.0% |
| !! | ATCTCTAAGACTTCATATCA+TGG | + | chr8.1:3470525-3470544 | None:intergenic | 30.0% |
| !! | GTTTCCATAAACTTGTTATC+CGG | - | chr8.1:3471437-3471456 | MS.gene035651:CDS | 30.0% |
| !! | TCTCTAAGACTTCATATCAT+GGG | + | chr8.1:3470524-3470543 | None:intergenic | 30.0% |
| !!! | ATTTTAGAGTGCCTATAACT+TGG | + | chr8.1:3471653-3471672 | None:intergenic | 30.0% |
| !!! | TTTTTGGGTGCAAATGTTTA+TGG | + | chr8.1:3468773-3468792 | None:intergenic | 30.0% |
| AAAGTCAGTTGCTCGTAATT+GGG | - | chr8.1:3469958-3469977 | MS.gene035651:intron | 35.0% | |
| ACAGGCAGTCAAATAAAAAC+AGG | + | chr8.1:3471218-3471237 | None:intergenic | 35.0% | |
| AGAAATTGTACATGAAGAGC+GGG | - | chr8.1:3471844-3471863 | MS.gene035651:CDS | 35.0% | |
| AGGCTAGATAAATGTGACAT+AGG | + | chr8.1:3469168-3469187 | None:intergenic | 35.0% | |
| AGTCTTCCTGATGAAATTGT+AGG | - | chr8.1:3469399-3469418 | MS.gene035651:intron | 35.0% | |
| AGTTCCGGATAACAAGTTTA+TGG | + | chr8.1:3471444-3471463 | None:intergenic | 35.0% | |
| ATGGAGTGAAAAAACTCACT+TGG | + | chr8.1:3468909-3468928 | None:intergenic | 35.0% | |
| ATTGTCATGTAGAAATCCCA+GGG | + | chr8.1:3471712-3471731 | None:intergenic | 35.0% | |
| ATTTGTGTTTATGTCCTGTC+CGG | - | chr8.1:3469476-3469495 | MS.gene035651:intron | 35.0% | |
| CCATGTAGATTCCAAGTTAT+AGG | - | chr8.1:3471639-3471658 | MS.gene035651:intron | 35.0% | |
| CCGTATCAATACAAATGGTT+AGG | + | chr8.1:3470197-3470216 | None:intergenic | 35.0% | |
| CCTATAACTTGGAATCTACA+TGG | + | chr8.1:3471642-3471661 | None:intergenic | 35.0% | |
| CCTCCAAATCAAAACTTATG+TGG | + | chr8.1:3470244-3470263 | None:intergenic | 35.0% | |
| CGCAACATGAAAAACATAAC+TGG | + | chr8.1:3471103-3471122 | None:intergenic | 35.0% | |
| CTTTCTACGATGATGAATTC+TGG | - | chr8.1:3468824-3468843 | MS.gene035651:intron | 35.0% | |
| GAAATGAACACGTGTAAAGA+AGG | - | chr8.1:3470217-3470236 | MS.gene035651:intron | 35.0% | |
| GATCATCCAAAACAAGCTTA+AGG | + | chr8.1:3469744-3469763 | None:intergenic | 35.0% | |
| GATCGACGTTACAAATTTAC+AGG | + | chr8.1:3471236-3471255 | None:intergenic | 35.0% | |
| GTCTTCCTGATGAAATTGTA+GGG | - | chr8.1:3469400-3469419 | MS.gene035651:intron | 35.0% | |
| GTTGTTTACATAAGCTGTCA+TGG | - | chr8.1:3469594-3469613 | MS.gene035651:intron | 35.0% | |
| TCAGGGAATTCAATTGTACT+TGG | - | chr8.1:3470088-3470107 | MS.gene035651:intron | 35.0% | |
| TCCATATTTGTGTGTCTTTC+AGG | - | chr8.1:3471774-3471793 | MS.gene035651:CDS | 35.0% | |
| TTAGGATCATGCTAAGTACT+TGG | - | chr8.1:3469056-3469075 | MS.gene035651:intron | 35.0% | |
| TTCATCCCTACAATTTCATC+AGG | + | chr8.1:3469408-3469427 | None:intergenic | 35.0% | |
| TTGACCAAAATTAGGTGAGT+AGG | + | chr8.1:3470482-3470501 | None:intergenic | 35.0% | |
| TTGCATGTCCAGTGATAATT+AGG | - | chr8.1:3470803-3470822 | MS.gene035651:intron | 35.0% | |
| TTTACCTGCTCACCAAATTT+GGG | - | chr8.1:3470763-3470782 | MS.gene035651:intron | 35.0% | |
| ! | ATAAGCCTTTGTCGTTTATC+CGG | + | chr8.1:3469498-3469517 | None:intergenic | 35.0% |
| ! | CTTGTGCCTTTAAAAGGATT+TGG | - | chr8.1:3470121-3470140 | MS.gene035651:intron | 35.0% |
| ! | TCAATTGTACTTGGAAGTGT+TGG | - | chr8.1:3470097-3470116 | MS.gene035651:intron | 35.0% |
| ! | TGATTTGGAGGATAGTTCAT+AGG | - | chr8.1:3470253-3470272 | MS.gene035651:intron | 35.0% |
| ! | TGTTTTCACTGCCTTGAAAA+TGG | - | chr8.1:3470013-3470032 | MS.gene035651:intron | 35.0% |
| !! | AATCTAATTGGTAATGGCAG+TGG | + | chr8.1:3470065-3470084 | None:intergenic | 35.0% |
| !! | GAGTCAATGTAACCACTTTT+TGG | + | chr8.1:3471756-3471775 | None:intergenic | 35.0% |
| !!! | CAAAGAGGTGTCGATTTTTT+GGG | + | chr8.1:3468788-3468807 | None:intergenic | 35.0% |
| !!! | CCACATAAGTTTTGATTTGG+AGG | - | chr8.1:3470241-3470260 | MS.gene035651:intron | 35.0% |
| !!! | GGTCCACATAAGTTTTGATT+TGG | - | chr8.1:3470238-3470257 | MS.gene035651:intron | 35.0% |
| !!! | TCAAAGAGGTGTCGATTTTT+TGG | + | chr8.1:3468789-3468808 | None:intergenic | 35.0% |
| AAGTCAGTTGCTCGTAATTG+GGG | - | chr8.1:3469959-3469978 | MS.gene035651:intron | 40.0% | |
| AGCATGTCTTGATGTTTGTG+AGG | - | chr8.1:3471163-3471182 | MS.gene035651:intron | 40.0% | |
| ATGATCCATGCTAGGAGTTA+AGG | - | chr8.1:3470356-3470375 | MS.gene035651:intron | 40.0% | |
| ATGTAACCAACTTCGTCTAG+TGG | - | chr8.1:3470688-3470707 | MS.gene035651:CDS | 40.0% | |
| CAAAGTCAGTTGCTCGTAAT+TGG | - | chr8.1:3469957-3469976 | MS.gene035651:intron | 40.0% | |
| CAATTTCGTCCAGACACTTA+CGG | - | chr8.1:3468880-3468899 | MS.gene035651:intron | 40.0% | |
| CATTGTCATGTAGAAATCCC+AGG | + | chr8.1:3471713-3471732 | None:intergenic | 40.0% | |
| CGTGTTTGTCAAGTTCTGTT+AGG | - | chr8.1:3469038-3469057 | MS.gene035651:intron | 40.0% | |
| CTAGAGAGTTGCACAGAAAT+GGG | - | chr8.1:3469909-3469928 | MS.gene035651:intron | 40.0% | |
| CTTTACCTGCTCACCAAATT+TGG | - | chr8.1:3470762-3470781 | MS.gene035651:intron | 40.0% | |
| GAGGATAGTTCATAGGTTAG+AGG | - | chr8.1:3470260-3470279 | MS.gene035651:intron | 40.0% | |
| GATAGCCAACTTTGTCTAGT+CGG | - | chr8.1:3470400-3470419 | MS.gene035651:intron | 40.0% | |
| GATCTTGGTCTCGAACATAA+TGG | - | chr8.1:3471271-3471290 | MS.gene035651:intron | 40.0% | |
| GCCTGAAAGACACACAAATA+TGG | + | chr8.1:3471778-3471797 | None:intergenic | 40.0% | |
| GGAGAAGATGAATGAATTGG+AGG | + | chr8.1:3468682-3468701 | None:intergenic | 40.0% | |
| TAGTGGAGCTGATACTACAA+GGG | - | chr8.1:3469862-3469881 | MS.gene035651:intron | 40.0% | |
| TGATCCATGCTAGGAGTTAA+GGG | - | chr8.1:3470357-3470376 | MS.gene035651:intron | 40.0% | |
| TGCCATGAAGAACCAAACAT+CGG | - | chr8.1:3471552-3471571 | MS.gene035651:intron | 40.0% | |
| TGTAACCAACTTCGTCTAGT+GGG | - | chr8.1:3470689-3470708 | MS.gene035651:CDS | 40.0% | |
| TTCAGCGATTGTGATCAAAG+AGG | + | chr8.1:3468803-3468822 | None:intergenic | 40.0% | |
| ! | AACAAGCTTAAGGGCATGTA+TGG | + | chr8.1:3469734-3469753 | None:intergenic | 40.0% |
| ! | ACGTGAGTTTGAAGCACTTA+AGG | - | chr8.1:3469083-3469102 | MS.gene035651:intron | 40.0% |
| ! | ACTAGACGAAGTTGGTTACA+TGG | + | chr8.1:3470689-3470708 | None:intergenic | 40.0% |
| ! | ATGTTTTACTGTCAGGCTAG+TGG | - | chr8.1:3469845-3469864 | MS.gene035651:intron | 40.0% |
| ! | GAATTGCAAAAGGGTGTGTT+TGG | - | chr8.1:3468992-3469011 | MS.gene035651:intron | 40.0% |
| ! | GACTGGAGTTTTCTATCACA+AGG | + | chr8.1:3471361-3471380 | None:intergenic | 40.0% |
| ! | GTTATATTTGGCTCGCAGTA+GGG | - | chr8.1:3471406-3471425 | MS.gene035651:CDS | 40.0% |
| ! | TCAACGAGACTCGTTTTGTA+GGG | + | chr8.1:3470931-3470950 | None:intergenic | 40.0% |
| ! | TTATATTTGGCTCGCAGTAG+GGG | - | chr8.1:3471407-3471426 | MS.gene035651:CDS | 40.0% |
| ! | TTTCTAGCAGACAAGTCTCT+TGG | + | chr8.1:3470981-3471000 | None:intergenic | 40.0% |
| !! | ACATGCCCTTAAGCTTGTTT+TGG | - | chr8.1:3469735-3469754 | MS.gene035651:intron | 40.0% |
| !! | CTTTGCTGGTTCATTGTCAA+CGG | + | chr8.1:3471826-3471845 | None:intergenic | 40.0% |
| !! | GTTGGTCTTGTGCCTTTAAA+AGG | - | chr8.1:3470115-3470134 | MS.gene035651:intron | 40.0% |
| !! | TGTGTGATGGTAATGGTGTT+TGG | + | chr8.1:3471488-3471507 | None:intergenic | 40.0% |
| AACACCCTTAACTCCTAGCA+TGG | + | chr8.1:3470364-3470383 | None:intergenic | 45.0% | |
| AAGCTGTCATGGAGAGCTTA+TGG | - | chr8.1:3469605-3469624 | MS.gene035651:intron | 45.0% | |
| AATTGTAGGGATGAAGCCAG+AGG | - | chr8.1:3469413-3469432 | MS.gene035651:intron | 45.0% | |
| AGAAAACTCCAGTCCAGAAC+TGG | - | chr8.1:3471367-3471386 | MS.gene035651:intron | 45.0% | |
| AGAGTTGCACAGAAATGGGT+TGG | - | chr8.1:3469913-3469932 | MS.gene035651:intron | 45.0% | |
| ATATGAACTAGGCAAGACCC+TGG | - | chr8.1:3471692-3471711 | MS.gene035651:intron | 45.0% | |
| ATCCATAGCAGAAGTCTTCG+CGG | + | chr8.1:3471921-3471940 | None:intergenic | 45.0% | |
| ATGAGAGTGATGAACCTGCA+TGG | - | chr8.1:3471874-3471893 | MS.gene035651:CDS | 45.0% | |
| ATTCTGCTAGTGGAGAAGAC+AGG | - | chr8.1:3469340-3469359 | MS.gene035651:intron | 45.0% | |
| CGAAGACTTCTGCTATGGAT+GGG | - | chr8.1:3471921-3471940 | MS.gene035651:CDS | 45.0% | |
| CGTAAGTGTCTGGACGAAAT+TGG | + | chr8.1:3468882-3468901 | None:intergenic | 45.0% | |
| CGTGTTTCAGGGAAAAAGAC+GGG | - | chr8.1:3469108-3469127 | MS.gene035651:intron | 45.0% | |
| CTAGTGGAGCTGATACTACA+AGG | - | chr8.1:3469861-3469880 | MS.gene035651:intron | 45.0% | |
| CTTCTCCGACTAGACAAAGT+TGG | + | chr8.1:3470408-3470427 | None:intergenic | 45.0% | |
| GCGTGTTTCAGGGAAAAAGA+CGG | - | chr8.1:3469107-3469126 | MS.gene035651:intron | 45.0% | |
| GCTAGAGAGTTGCACAGAAA+TGG | - | chr8.1:3469908-3469927 | MS.gene035651:intron | 45.0% | |
| GTCTGGACGAAATTGGTTGA+AGG | + | chr8.1:3468875-3468894 | None:intergenic | 45.0% | |
| GTTCATTGTCAACGGCAACA+TGG | + | chr8.1:3471818-3471837 | None:intergenic | 45.0% | |
| TAGCAGACAAGTCTCTTGGA+AGG | + | chr8.1:3470977-3470996 | None:intergenic | 45.0% | |
| TATGAACTAGGCAAGACCCT+GGG | - | chr8.1:3471693-3471712 | MS.gene035651:intron | 45.0% | |
| TTCTGCTAGTGGAGAAGACA+GGG | - | chr8.1:3469341-3469360 | MS.gene035651:intron | 45.0% | |
| ! | AACTGGCTTCGATCTAGGTT+TGG | - | chr8.1:3471384-3471403 | MS.gene035651:intron | 45.0% |
| ! | AATCAACTAGGGGTGTGTGA+TGG | + | chr8.1:3471501-3471520 | None:intergenic | 45.0% |
| ! | CACTTAAGGAGCGTGTTTCA+GGG | - | chr8.1:3469097-3469116 | MS.gene035651:intron | 45.0% |
| ! | CTTTTCCCACTAGACGAAGT+TGG | + | chr8.1:3470697-3470716 | None:intergenic | 45.0% |
| ! | GGTTATATTTGGCTCGCAGT+AGG | - | chr8.1:3471405-3471424 | MS.gene035651:CDS | 45.0% |
| ! | GTCAACGAGACTCGTTTTGT+AGG | + | chr8.1:3470932-3470951 | None:intergenic | 45.0% |
| ! | TATATTTGGCTCGCAGTAGG+GGG | - | chr8.1:3471408-3471427 | MS.gene035651:CDS | 45.0% |
| !! | CTCCGATGTTTGGTTCTTCA+TGG | + | chr8.1:3471557-3471576 | None:intergenic | 45.0% |
| ACCTAGATCGAAGCCAGTTC+TGG | + | chr8.1:3471383-3471402 | None:intergenic | 50.0% | |
| ACTTGGACTCCGTAAGTGTC+TGG | + | chr8.1:3468892-3468911 | None:intergenic | 50.0% | |
| CCTGTCCGGATAAACGACAA+AGG | - | chr8.1:3469490-3469509 | MS.gene035651:intron | 50.0% | |
| GAAGGAACGAACACGAAGAG+AGG | + | chr8.1:3468857-3468876 | None:intergenic | 50.0% | |
| GACAAGTCTCTTGGAAGGCT+TGG | + | chr8.1:3470972-3470991 | None:intergenic | 50.0% | |
| GCGAAGACTTCTGCTATGGA+TGG | - | chr8.1:3471920-3471939 | MS.gene035651:CDS | 50.0% | |
| GGAGAAGACAGGGTTGTAGT+TGG | - | chr8.1:3469351-3469370 | MS.gene035651:intron | 50.0% | |
| ! | AGGACCCAAATTTGGTGAGC+AGG | + | chr8.1:3470770-3470789 | None:intergenic | 50.0% |
| ! | AGTCTCTTGGAAGGCTTGGT+CGG | + | chr8.1:3470968-3470987 | None:intergenic | 50.0% |
| ! | ATATTTGGCTCGCAGTAGGG+GGG | - | chr8.1:3471409-3471428 | MS.gene035651:CDS | 50.0% |
| ! | CCTTTGTCGTTTATCCGGAC+AGG | + | chr8.1:3469493-3469512 | None:intergenic | 50.0% |
| ! | CTAGGGGTGTGTGATGGTAA+TGG | + | chr8.1:3471495-3471514 | None:intergenic | 50.0% |
| ! | GCACTTAAGGAGCGTGTTTC+AGG | - | chr8.1:3469096-3469115 | MS.gene035651:intron | 50.0% |
| ! | TCCAGAACTGGCTTCGATCT+AGG | - | chr8.1:3471379-3471398 | MS.gene035651:intron | 50.0% |
| AGAAACCTTGCCTGCCATGC+AGG | + | chr8.1:3471891-3471910 | None:intergenic | 55.0% | |
| ATGAACCTGCATGGCAGGCA+AGG | - | chr8.1:3471883-3471902 | MS.gene035651:CDS | 55.0% | |
| GACCGCGAAGACTTCTGCTA+TGG | - | chr8.1:3471916-3471935 | MS.gene035651:CDS | 55.0% | |
| GAGTGATGAACCTGCATGGC+AGG | - | chr8.1:3471878-3471897 | MS.gene035651:CDS | 55.0% | |
| ! | GTCTCTTGGAAGGCTTGGTC+GGG | + | chr8.1:3470967-3470986 | None:intergenic | 55.0% |
| !! | GATCGAAGCCAGTTCTGGAC+TGG | + | chr8.1:3471378-3471397 | None:intergenic | 55.0% |
| ! | TTGGAAGGCTTGGTCGGGAG+AGG | + | chr8.1:3470962-3470981 | None:intergenic | 60.0% |
| GGCTCGCAGTAGGGGGGATT+CGG | - | chr8.1:3471415-3471434 | MS.gene035651:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 3468649 | 3471959 | 3468649 | ID=MS.gene035651 |
| chr8.1 | mRNA | 3468649 | 3471959 | 3468649 | ID=MS.gene035651.t1;Parent=MS.gene035651 |
| chr8.1 | exon | 3471699 | 3471959 | 3471699 | ID=MS.gene035651.t1.exon1;Parent=MS.gene035651.t1 |
| chr8.1 | CDS | 3471699 | 3471959 | 3471699 | ID=cds.MS.gene035651.t1;Parent=MS.gene035651.t1 |
| chr8.1 | exon | 3471393 | 3471548 | 3471393 | ID=MS.gene035651.t1.exon2;Parent=MS.gene035651.t1 |
| chr8.1 | CDS | 3471393 | 3471548 | 3471393 | ID=cds.MS.gene035651.t1;Parent=MS.gene035651.t1 |
| chr8.1 | exon | 3471174 | 3471269 | 3471174 | ID=MS.gene035651.t1.exon3;Parent=MS.gene035651.t1 |
| chr8.1 | CDS | 3471174 | 3471269 | 3471174 | ID=cds.MS.gene035651.t1;Parent=MS.gene035651.t1 |
| chr8.1 | exon | 3470628 | 3470748 | 3470628 | ID=MS.gene035651.t1.exon4;Parent=MS.gene035651.t1 |
| chr8.1 | CDS | 3470628 | 3470748 | 3470628 | ID=cds.MS.gene035651.t1;Parent=MS.gene035651.t1 |
| chr8.1 | exon | 3468649 | 3468812 | 3468649 | ID=MS.gene035651.t1.exon5;Parent=MS.gene035651.t1 |
| chr8.1 | CDS | 3468649 | 3468812 | 3468649 | ID=cds.MS.gene035651.t1;Parent=MS.gene035651.t1 |
| Gene Sequence |
| Protein sequence |
