Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03567.t1 | RHN66541.1 | 86.6 | 409 | 38 | 2 | 29 | 426 | 1 | 403 | 8.60E-199 | 703 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03567.t1 | Q10EL1 | 48.4 | 349 | 134 | 9 | 40 | 345 | 114 | 459 | 1.0e-75 | 285.4 |
| MS.gene03567.t1 | Q10EL1 | 44.4 | 63 | 35 | 0 | 363 | 425 | 635 | 697 | 1.1e-08 | 62.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03567.t1 | A0A396IP67 | 86.6 | 409 | 38 | 2 | 29 | 426 | 1 | 403 | 6.2e-199 | 703.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene03567.t1 | TF | C3H |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03567.t1 | MTR_3g435680 | 86.567 | 402 | 37 | 2 | 36 | 426 | 1 | 396 | 0.0 | 701 |
| MS.gene03567.t1 | MTR_3g435590 | 54.352 | 517 | 97 | 10 | 1 | 426 | 1 | 469 | 7.07e-172 | 489 |
| MS.gene03567.t1 | MTR_3g029590 | 61.330 | 406 | 82 | 10 | 40 | 374 | 93 | 494 | 2.51e-139 | 416 |
| MS.gene03567.t1 | MTR_3g029590 | 41.791 | 134 | 49 | 4 | 321 | 425 | 548 | 681 | 5.49e-19 | 90.1 |
| MS.gene03567.t1 | MTR_7g092070 | 48.507 | 402 | 138 | 10 | 40 | 374 | 95 | 494 | 1.52e-105 | 328 |
| MS.gene03567.t1 | MTR_7g092070 | 65.306 | 49 | 17 | 0 | 377 | 425 | 627 | 675 | 3.34e-14 | 75.1 |
| MS.gene03567.t1 | MTR_1g050438 | 41.730 | 393 | 160 | 9 | 40 | 369 | 64 | 450 | 2.83e-88 | 280 |
| MS.gene03567.t1 | MTR_0728s0020 | 41.730 | 393 | 160 | 9 | 40 | 369 | 80 | 466 | 6.46e-88 | 280 |
| MS.gene03567.t1 | MTR_5g082830 | 43.529 | 340 | 139 | 13 | 40 | 345 | 78 | 398 | 1.67e-73 | 243 |
| MS.gene03567.t1 | MTR_5g071070 | 45.098 | 255 | 107 | 6 | 144 | 365 | 115 | 369 | 6.31e-68 | 227 |
| MS.gene03567.t1 | MTR_5g071070 | 44.706 | 255 | 108 | 6 | 144 | 365 | 197 | 451 | 5.46e-67 | 226 |
| MS.gene03567.t1 | MTR_3g070880 | 38.369 | 331 | 146 | 8 | 40 | 360 | 58 | 340 | 9.21e-64 | 214 |
| MS.gene03567.t1 | MTR_1g075890 | 66.187 | 139 | 45 | 1 | 154 | 290 | 206 | 344 | 1.03e-63 | 216 |
| MS.gene03567.t1 | MTR_8g102100 | 63.559 | 118 | 43 | 0 | 171 | 288 | 77 | 194 | 1.07e-49 | 173 |
| MS.gene03567.t1 | MTR_6g090380 | 68.224 | 107 | 34 | 0 | 171 | 277 | 99 | 205 | 2.41e-48 | 169 |
| MS.gene03567.t1 | MTR_3g464260 | 34.513 | 339 | 124 | 11 | 154 | 426 | 183 | 489 | 1.95e-47 | 170 |
| MS.gene03567.t1 | MTR_3g103960 | 52.817 | 142 | 59 | 4 | 170 | 309 | 48 | 183 | 5.50e-46 | 160 |
| MS.gene03567.t1 | MTR_2g090605 | 60.360 | 111 | 44 | 0 | 175 | 285 | 77 | 187 | 1.36e-43 | 157 |
| MS.gene03567.t1 | MTR_4g078660 | 58.879 | 107 | 44 | 0 | 171 | 277 | 56 | 162 | 2.30e-42 | 152 |
| MS.gene03567.t1 | MTR_3g464270 | 44.828 | 174 | 85 | 3 | 174 | 346 | 8 | 171 | 1.10e-41 | 151 |
| MS.gene03567.t1 | MTR_3g464290 | 55.208 | 96 | 40 | 2 | 156 | 248 | 79 | 174 | 4.06e-30 | 121 |
| MS.gene03567.t1 | MTR_3g464280 | 43.704 | 135 | 40 | 2 | 154 | 286 | 165 | 265 | 3.44e-28 | 116 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03567.t1 | AT2G41900 | 50.145 | 345 | 126 | 8 | 40 | 345 | 96 | 433 | 2.56e-92 | 293 |
| MS.gene03567.t1 | AT5G12850 | 48.011 | 352 | 134 | 10 | 40 | 345 | 89 | 437 | 1.14e-84 | 273 |
| MS.gene03567.t1 | AT5G58620 | 54.167 | 216 | 78 | 6 | 154 | 353 | 186 | 396 | 1.79e-70 | 233 |
| MS.gene03567.t1 | AT3G55980 | 42.415 | 323 | 150 | 12 | 40 | 342 | 78 | 384 | 6.71e-65 | 218 |
| MS.gene03567.t1 | AT3G55980 | 42.415 | 323 | 150 | 12 | 40 | 342 | 145 | 451 | 1.87e-64 | 218 |
| MS.gene03567.t1 | AT2G40140 | 41.912 | 272 | 107 | 4 | 68 | 328 | 137 | 368 | 3.49e-63 | 214 |
| MS.gene03567.t1 | AT2G40140 | 41.912 | 272 | 107 | 4 | 68 | 328 | 137 | 368 | 3.49e-63 | 214 |
| MS.gene03567.t1 | AT2G25900 | 66.355 | 107 | 36 | 0 | 171 | 277 | 86 | 192 | 1.56e-49 | 171 |
| MS.gene03567.t1 | AT2G25900 | 66.355 | 107 | 36 | 0 | 171 | 277 | 86 | 192 | 1.56e-49 | 171 |
| MS.gene03567.t1 | AT1G03790 | 52.174 | 161 | 71 | 3 | 134 | 290 | 43 | 201 | 1.20e-46 | 165 |
| MS.gene03567.t1 | AT4G29190 | 56.061 | 132 | 57 | 1 | 157 | 287 | 60 | 191 | 1.40e-46 | 164 |
| MS.gene03567.t1 | AT2G19810 | 63.551 | 107 | 39 | 0 | 171 | 277 | 74 | 180 | 2.15e-45 | 161 |
| MS.gene03567.t1 | AT5G07500 | 57.759 | 116 | 49 | 0 | 162 | 277 | 39 | 154 | 4.26e-45 | 157 |
| MS.gene03567.t1 | AT5G44260 | 58.871 | 124 | 48 | 2 | 155 | 277 | 42 | 163 | 8.01e-43 | 155 |
Find 101 sgRNAs with CRISPR-Local
Find 115 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGGAGTATTAATACTTTAA+AGG | 0.191112 | 3.4:-30402723 | MS.gene03567:CDS |
| CTGTTAACTCCTGGTCTAAA+TGG | 0.200828 | 3.4:-30401734 | MS.gene03567:CDS |
| CCTTTATCATCTGCTGAAAA+TGG | 0.235234 | 3.4:-30402476 | MS.gene03567:CDS |
| TGGCCAGCTCTTCACTTTCC+AGG | 0.289536 | 3.4:-30401855 | MS.gene03567:CDS |
| TTCTCATAAGGATGGTAAAA+AGG | 0.298159 | 3.4:+30402266 | None:intergenic |
| TCTAAATGGGGTTCCAATAC+TGG | 0.304870 | 3.4:-30401720 | MS.gene03567:CDS |
| TCTTGGAACATATTTCTTCC+TGG | 0.335210 | 3.4:+30401837 | None:intergenic |
| CATTTAGACCAGGAGTTAAC+AGG | 0.344738 | 3.4:+30401735 | None:intergenic |
| CACTGAAATGGCACCAGGAC+GGG | 0.356573 | 3.4:+30401764 | None:intergenic |
| ACCAAAGTCATTTCCGTTAA+CGG | 0.357126 | 3.4:+30401683 | None:intergenic |
| GATCCAGTGGACACATATAT+TGG | 0.363755 | 3.4:+30402026 | None:intergenic |
| TATCTTAGTTGAGAATAGAT+TGG | 0.376314 | 3.4:+30401595 | None:intergenic |
| CCGTTTGCATATGGAGATAA+AGG | 0.378114 | 3.4:+30401900 | None:intergenic |
| GTGAAGAGCCTGATCTATCT+TGG | 0.390741 | 3.4:-30401620 | MS.gene03567:CDS |
| CCAATACTGGAAAACTTGAT+TGG | 0.395651 | 3.4:-30401707 | MS.gene03567:CDS |
| TGTTAACTCCTGGTCTAAAT+GGG | 0.401435 | 3.4:-30401733 | MS.gene03567:CDS |
| AGGAGCAGATGCAGCTGATC+GGG | 0.402058 | 3.4:+30401989 | None:intergenic |
| GTAAATGCTGCTGATGCTGC+TGG | 0.405634 | 3.4:-30402674 | MS.gene03567:CDS |
| AGAATGGTGCGATACCGATC+TGG | 0.414981 | 3.4:+30402116 | None:intergenic |
| TCATGTTCATCTGCGGTAGA+AGG | 0.417271 | 3.4:-30402815 | MS.gene03567:CDS |
| AGCTGTAGGTGAACTTTCTA+AGG | 0.419982 | 3.4:+30402228 | None:intergenic |
| GGAGAGATGCCGTTTGCATA+TGG | 0.429891 | 3.4:+30401891 | None:intergenic |
| AAACTTGATTGGTCCGTTAA+CGG | 0.434602 | 3.4:-30401696 | MS.gene03567:CDS |
| ATTGTGAAAACAAGTCTTGA+AGG | 0.440368 | 3.4:-30402578 | MS.gene03567:CDS |
| GCAGCCATGTCCATGACATT+AGG | 0.442851 | 3.4:+30401969 | None:intergenic |
| TCTACACTAGGAAGTGCAAT+TGG | 0.451987 | 3.4:+30402380 | None:intergenic |
| CTCCTTCGAGCATTCTCATA+AGG | 0.454231 | 3.4:+30402254 | None:intergenic |
| ACTTTAAAGGTTACACCGTC+AGG | 0.455897 | 3.4:-30402710 | MS.gene03567:CDS |
| GGAGATAAAGGCAGTGCAAA+AGG | 0.462149 | 3.4:+30401912 | None:intergenic |
| ACAGCTGTGTCGGTAAACTT+TGG | 0.463128 | 3.4:+30402431 | None:intergenic |
| AACAGGTCGGCTCACTGAAA+TGG | 0.465830 | 3.4:+30401752 | None:intergenic |
| ATCGTGCATACTCTCATGAT+TGG | 0.468172 | 3.4:-30402298 | MS.gene03567:CDS |
| TGTTTCTCACAGCCCCGTCC+TGG | 0.471928 | 3.4:-30401777 | MS.gene03567:CDS |
| GAAAACAAGTCTTGAAGGAC+TGG | 0.473587 | 3.4:-30402573 | MS.gene03567:CDS |
| GCTGGCCAAGCATTATTTGA+AGG | 0.478194 | 3.4:+30401870 | None:intergenic |
| AGTACCATCTTTGCAGAGAA+TGG | 0.480755 | 3.4:+30402100 | None:intergenic |
| AATATGTTCCAAGACATTCA+TGG | 0.483668 | 3.4:-30401828 | MS.gene03567:CDS |
| CGCACCATTCTCTGCAAAGA+TGG | 0.486710 | 3.4:-30402104 | MS.gene03567:CDS |
| TGTCTGTATGGCTGATTCAA+TGG | 0.488364 | 3.4:-30402759 | MS.gene03567:CDS |
| GATGAACATGACGAAATTGA+AGG | 0.488707 | 3.4:+30402827 | None:intergenic |
| TCAATGGTGGATGCTTCCTA+TGG | 0.491814 | 3.4:-30402743 | MS.gene03567:CDS |
| ATTGTTTCCATGCTCAAAAG+AGG | 0.495896 | 3.4:+30401644 | None:intergenic |
| CTTCCTGGAAAGTGAAGAGC+TGG | 0.497956 | 3.4:+30401852 | None:intergenic |
| TTGGTAGCAAACCACGATAA+AGG | 0.498466 | 3.4:+30401937 | None:intergenic |
| TCCGTTAACGGAAATGACTT+TGG | 0.499356 | 3.4:-30401684 | MS.gene03567:CDS |
| ACTGAAATGGCACCAGGACG+GGG | 0.501239 | 3.4:+30401765 | None:intergenic |
| CTCATGGACTATTCGAGACC+TGG | 0.504397 | 3.4:-30402145 | MS.gene03567:CDS |
| TAAAGTATTAATACTCCCAT+AGG | 0.504776 | 3.4:+30402727 | None:intergenic |
| GATGCAGCTGATCGGGGTAA+AGG | 0.505671 | 3.4:+30401996 | None:intergenic |
| TGAAGAGCCTGATCTATCTT+GGG | 0.506674 | 3.4:-30401619 | MS.gene03567:CDS |
| ATACCGATCTGGGTGTAGCC+AGG | 0.517913 | 3.4:+30402127 | None:intergenic |
| GATAATTGTGAATTTGCTCA+TGG | 0.522724 | 3.4:-30402161 | MS.gene03567:CDS |
| GATTGGACCCAAGATAGATC+AGG | 0.523337 | 3.4:+30401612 | None:intergenic |
| GCAGCATTTACACCAGCCTC+TGG | 0.529557 | 3.4:+30402686 | None:intergenic |
| TTTGGAGCCACAGGAGAGGA+TGG | 0.530352 | 3.4:+30402449 | None:intergenic |
| CCTTTATCTCCATATGCAAA+CGG | 0.530866 | 3.4:-30401900 | MS.gene03567:CDS |
| CGGCTCACTGAAATGGCACC+AGG | 0.533049 | 3.4:+30401759 | None:intergenic |
| AAAGGCAGTGCAAAAGGAGT+TGG | 0.533658 | 3.4:+30401918 | None:intergenic |
| CGTCCAATATATGTGTCCAC+TGG | 0.540039 | 3.4:-30402029 | MS.gene03567:CDS |
| GCTGCTGACCATGAATGTCT+TGG | 0.541101 | 3.4:+30401820 | None:intergenic |
| TCGGTAAACTTTGGAGCCAC+AGG | 0.542025 | 3.4:+30402440 | None:intergenic |
| TCAGTTAATTGAAAGATGTA+CGG | 0.542243 | 3.4:-30402872 | None:intergenic |
| TAGGAGCAGATGCAGCTGAT+CGG | 0.547990 | 3.4:+30401988 | None:intergenic |
| TCTCTCCTTCAAATAATGCT+TGG | 0.548783 | 3.4:-30401875 | MS.gene03567:CDS |
| GAATGGTGCGATACCGATCT+GGG | 0.555264 | 3.4:+30402117 | None:intergenic |
| GATAAAGGGGCAGCTGAATG+AGG | 0.555896 | 3.4:+30402491 | None:intergenic |
| ACACCGTCAGGTCCAGAGGC+TGG | 0.557164 | 3.4:-30402698 | MS.gene03567:CDS |
| GGATGCTGATGGAAACCGTC+TGG | 0.559215 | 3.4:-30402633 | MS.gene03567:CDS |
| CAATGGTGGATGCTTCCTAT+GGG | 0.563814 | 3.4:-30402742 | MS.gene03567:CDS |
| TGAGCCGACCTGTTAACTCC+TGG | 0.570712 | 3.4:-30401743 | MS.gene03567:CDS |
| TCACTGAAATGGCACCAGGA+CGG | 0.575540 | 3.4:+30401763 | None:intergenic |
| ATCAATTGTGTGGATGCTGA+TGG | 0.582815 | 3.4:-30402644 | MS.gene03567:CDS |
| AGGGCATGGCACACAGCTGT+AGG | 0.585274 | 3.4:+30402214 | None:intergenic |
| TTCGAGCATTCTCATAAGGA+TGG | 0.587046 | 3.4:+30402258 | None:intergenic |
| TGCATCTGCTCCTAATGTCA+TGG | 0.589356 | 3.4:-30401979 | MS.gene03567:CDS |
| CTGTATGGCTGATTCAATGG+TGG | 0.593449 | 3.4:-30402756 | MS.gene03567:CDS |
| TGGTACTAGTTGTGACCGAA+AGG | 0.594642 | 3.4:-30402084 | MS.gene03567:CDS |
| TGTAGAATTAACAGCTGTGT+CGG | 0.595082 | 3.4:+30402421 | None:intergenic |
| TGCTCCTAATGTCATGGACA+TGG | 0.600640 | 3.4:-30401973 | MS.gene03567:CDS |
| CTTGATGAATTAACAGATAG+CGG | 0.605690 | 3.4:+30402515 | None:intergenic |
| ATTGGAACCCCATTTAGACC+AGG | 0.611618 | 3.4:+30401725 | None:intergenic |
| AGACCTGGCTACACCCAGAT+CGG | 0.613127 | 3.4:-30402130 | MS.gene03567:CDS |
| TACATGCTGCTTTCTACACT+AGG | 0.613651 | 3.4:+30402368 | None:intergenic |
| TGCTGATGGAAACCGTCTGG+TGG | 0.616222 | 3.4:-30402630 | MS.gene03567:CDS |
| GGTTACACCGTCAGGTCCAG+AGG | 0.620071 | 3.4:-30402702 | MS.gene03567:CDS |
| ACACCAGCCTCTGGACCTGA+CGG | 0.620211 | 3.4:+30402695 | None:intergenic |
| TGGATCTCCATCCTCTCCTG+TGG | 0.628993 | 3.4:-30402456 | MS.gene03567:CDS |
| TAACATTAACATCCACCAGA+CGG | 0.629565 | 3.4:+30402618 | None:intergenic |
| TAAAGGAACAGCAGATCCAG+TGG | 0.630564 | 3.4:+30402013 | None:intergenic |
| AGTATGCACGATGACAAAGA+AGG | 0.634741 | 3.4:+30402309 | None:intergenic |
| ATCCTTATGAGAATGCTCGA+AGG | 0.652618 | 3.4:-30402256 | MS.gene03567:CDS |
| GTTAATTGAAAGATGTACGG+TGG | 0.654833 | 3.4:-30402869 | None:intergenic |
| AATTTCGTCATGTTCATCTG+CGG | 0.655655 | 3.4:-30402822 | MS.gene03567:CDS |
| GGAGCAGATGCAGCTGATCG+GGG | 0.658028 | 3.4:+30401990 | None:intergenic |
| GCTGCTACGAGCCTTTATCG+TGG | 0.663368 | 3.4:-30401948 | MS.gene03567:CDS |
| AAACTTTGGAGCCACAGGAG+AGG | 0.663839 | 3.4:+30402445 | None:intergenic |
| GTTAACTCCTGGTCTAAATG+GGG | 0.665213 | 3.4:-30401732 | MS.gene03567:CDS |
| GAACAATCGATATCAGCACC+AGG | 0.675991 | 3.4:+30402542 | None:intergenic |
| TGGCGCTGATATCAATTGTG+TGG | 0.679251 | 3.4:-30402654 | MS.gene03567:CDS |
| ATACATGCGAAATTCATCTG+TGG | 0.700612 | 3.4:+30402343 | None:intergenic |
| TAGACCAGGAGTTAACAGGT+CGG | 0.724329 | 3.4:+30401739 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAGTATTAATACTCCCAT+AGG | + | chr3.4:30401732-30401751 | None:intergenic | 25.0% |
| !!! | AATCCCCTTTTTTAAAATCA+GGG | + | chr3.4:30402264-30402283 | None:intergenic | 25.0% |
| !!! | TGGGAGTATTAATACTTTAA+AGG | - | chr3.4:30401733-30401752 | MS.gene03567:CDS | 25.0% |
| AATATGTTCCAAGACATTCA+TGG | - | chr3.4:30402628-30402647 | MS.gene03567:CDS | 30.0% | |
| ATTGTGAAAACAAGTCTTGA+AGG | - | chr3.4:30401878-30401897 | MS.gene03567:CDS | 30.0% | |
| CTTGATGAATTAACAGATAG+CGG | + | chr3.4:30401944-30401963 | None:intergenic | 30.0% | |
| GAAAAATCTAACTGTCTGTA+TGG | - | chr3.4:30401685-30401704 | MS.gene03567:CDS | 30.0% | |
| TTCTCATAAGGATGGTAAAA+AGG | + | chr3.4:30402193-30402212 | None:intergenic | 30.0% | |
| ! | ATTTTCAGCAGATGATAAAG+GGG | + | chr3.4:30401981-30402000 | None:intergenic | 30.0% |
| ! | CATTTTCAGCAGATGATAAA+GGG | + | chr3.4:30401982-30402001 | None:intergenic | 30.0% |
| ! | GATAATTGTGAATTTGCTCA+TGG | - | chr3.4:30402295-30402314 | MS.gene03567:CDS | 30.0% |
| !! | ATGCCCTGATTTTAAAAAAG+GGG | - | chr3.4:30402258-30402277 | MS.gene03567:CDS | 30.0% |
| !! | CATGCCCTGATTTTAAAAAA+GGG | - | chr3.4:30402257-30402276 | MS.gene03567:CDS | 30.0% |
| !!! | CAATCCCCTTTTTTAAAATC+AGG | + | chr3.4:30402265-30402284 | None:intergenic | 30.0% |
| !!! | GAAGGAGATTTTGATTTGTT+AGG | + | chr3.4:30401614-30401633 | None:intergenic | 30.0% |
| AATTTCGTCATGTTCATCTG+CGG | - | chr3.4:30401634-30401653 | MS.gene03567:CDS | 35.0% | |
| ACCAAAGTCATTTCCGTTAA+CGG | + | chr3.4:30402776-30402795 | None:intergenic | 35.0% | |
| ATACATGCGAAATTCATCTG+TGG | + | chr3.4:30402116-30402135 | None:intergenic | 35.0% | |
| ATTGTTTCCATGCTCAAAAG+AGG | + | chr3.4:30402815-30402834 | None:intergenic | 35.0% | |
| CCAATACTGGAAAACTTGAT+TGG | - | chr3.4:30402749-30402768 | MS.gene03567:CDS | 35.0% | |
| CCTTTATCATCTGCTGAAAA+TGG | - | chr3.4:30401980-30401999 | MS.gene03567:CDS | 35.0% | |
| CCTTTATCTCCATATGCAAA+CGG | - | chr3.4:30402556-30402575 | MS.gene03567:CDS | 35.0% | |
| GATGAACATGACGAAATTGA+AGG | + | chr3.4:30401632-30401651 | None:intergenic | 35.0% | |
| TAACATTAACATCCACCAGA+CGG | + | chr3.4:30401841-30401860 | None:intergenic | 35.0% | |
| TCTCTCCTTCAAATAATGCT+TGG | - | chr3.4:30402581-30402600 | MS.gene03567:CDS | 35.0% | |
| TCTTGGAACATATTTCTTCC+TGG | + | chr3.4:30402622-30402641 | None:intergenic | 35.0% | |
| TGTAGAATTAACAGCTGTGT+CGG | + | chr3.4:30402038-30402057 | None:intergenic | 35.0% | |
| TGTTAACTCCTGGTCTAAAT+GGG | - | chr3.4:30402723-30402742 | MS.gene03567:CDS | 35.0% | |
| ! | AAACTTGATTGGTCCGTTAA+CGG | - | chr3.4:30402760-30402779 | MS.gene03567:CDS | 35.0% |
| ! | AGATATACCTCTTTTGAGCA+TGG | - | chr3.4:30402805-30402824 | MS.gene03567:CDS | 35.0% |
| ! | CCAATCAAGTTTTCCAGTAT+TGG | + | chr3.4:30402752-30402771 | None:intergenic | 35.0% |
| ! | CCATTTTCAGCAGATGATAA+AGG | + | chr3.4:30401983-30402002 | None:intergenic | 35.0% |
| ! | TCTTTTGAGCATGGAAACAA+TGG | - | chr3.4:30402814-30402833 | MS.gene03567:CDS | 35.0% |
| !! | CCATGCCCTGATTTTAAAAA+AGG | - | chr3.4:30402256-30402275 | MS.gene03567:CDS | 35.0% |
| !!! | CCTTTTTTAAAATCAGGGCA+TGG | + | chr3.4:30402259-30402278 | None:intergenic | 35.0% |
| AGCTGTAGGTGAACTTTCTA+AGG | + | chr3.4:30402231-30402250 | None:intergenic | 40.0% | |
| AGGATGGTAAAAAGGACACT+CGG | + | chr3.4:30402185-30402204 | None:intergenic | 40.0% | |
| AGTACCATCTTTGCAGAGAA+TGG | + | chr3.4:30402359-30402378 | None:intergenic | 40.0% | |
| AGTATGCACGATGACAAAGA+AGG | + | chr3.4:30402150-30402169 | None:intergenic | 40.0% | |
| ATCAATTGTGTGGATGCTGA+TGG | - | chr3.4:30401812-30401831 | MS.gene03567:CDS | 40.0% | |
| ATCCTTATGAGAATGCTCGA+AGG | - | chr3.4:30402200-30402219 | MS.gene03567:CDS | 40.0% | |
| ATCGTGCATACTCTCATGAT+TGG | - | chr3.4:30402158-30402177 | MS.gene03567:CDS | 40.0% | |
| CATTTAGACCAGGAGTTAAC+AGG | + | chr3.4:30402724-30402743 | None:intergenic | 40.0% | |
| CCGTTTGCATATGGAGATAA+AGG | + | chr3.4:30402559-30402578 | None:intergenic | 40.0% | |
| CTGTTAACTCCTGGTCTAAA+TGG | - | chr3.4:30402722-30402741 | MS.gene03567:CDS | 40.0% | |
| GAAAACAAGTCTTGAAGGAC+TGG | - | chr3.4:30401883-30401902 | MS.gene03567:CDS | 40.0% | |
| GATCCAGTGGACACATATAT+TGG | + | chr3.4:30402433-30402452 | None:intergenic | 40.0% | |
| GTTAACTCCTGGTCTAAATG+GGG | - | chr3.4:30402724-30402743 | MS.gene03567:CDS | 40.0% | |
| TCCGTTAACGGAAATGACTT+TGG | - | chr3.4:30402772-30402791 | MS.gene03567:CDS | 40.0% | |
| TCTAAATGGGGTTCCAATAC+TGG | - | chr3.4:30402736-30402755 | MS.gene03567:CDS | 40.0% | |
| TGAAGAGCCTGATCTATCTT+GGG | - | chr3.4:30402837-30402856 | MS.gene03567:CDS | 40.0% | |
| TTCGAGCATTCTCATAAGGA+TGG | + | chr3.4:30402201-30402220 | None:intergenic | 40.0% | |
| ! | ACTTTAAAGGTTACACCGTC+AGG | - | chr3.4:30401746-30401765 | MS.gene03567:CDS | 40.0% |
| ! | GTGCAAAAAAGCACACCTTT+CGG | + | chr3.4:30402390-30402409 | None:intergenic | 40.0% |
| ! | TCTACACTAGGAAGTGCAAT+TGG | + | chr3.4:30402079-30402098 | None:intergenic | 40.0% |
| ! | TGTCTGTATGGCTGATTCAA+TGG | - | chr3.4:30401697-30401716 | MS.gene03567:CDS | 40.0% |
| ! | TTGGTAGCAAACCACGATAA+AGG | + | chr3.4:30402522-30402541 | None:intergenic | 40.0% |
| !! | TACATGCTGCTTTCTACACT+AGG | + | chr3.4:30402091-30402110 | None:intergenic | 40.0% |
| AAAGGCAGTGCAAAAGGAGT+TGG | + | chr3.4:30402541-30402560 | None:intergenic | 45.0% | |
| ATTGGAACCCCATTTAGACC+AGG | + | chr3.4:30402734-30402753 | None:intergenic | 45.0% | |
| CGTCCAATATATGTGTCCAC+TGG | - | chr3.4:30402427-30402446 | MS.gene03567:CDS | 45.0% | |
| CTCCTTCGAGCATTCTCATA+AGG | + | chr3.4:30402205-30402224 | None:intergenic | 45.0% | |
| GAACAATCGATATCAGCACC+AGG | + | chr3.4:30401917-30401936 | None:intergenic | 45.0% | |
| GATTGGACCCAAGATAGATC+AGG | + | chr3.4:30402847-30402866 | None:intergenic | 45.0% | |
| GCTGGCCAAGCATTATTTGA+AGG | + | chr3.4:30402589-30402608 | None:intergenic | 45.0% | |
| GGAGATAAAGGCAGTGCAAA+AGG | + | chr3.4:30402547-30402566 | None:intergenic | 45.0% | |
| GTGAAGAGCCTGATCTATCT+TGG | - | chr3.4:30402836-30402855 | MS.gene03567:CDS | 45.0% | |
| TAAAGGAACAGCAGATCCAG+TGG | + | chr3.4:30402446-30402465 | None:intergenic | 45.0% | |
| TAGACCAGGAGTTAACAGGT+CGG | + | chr3.4:30402720-30402739 | None:intergenic | 45.0% | |
| TCATGTTCATCTGCGGTAGA+AGG | - | chr3.4:30401641-30401660 | MS.gene03567:CDS | 45.0% | |
| TGCATCTGCTCCTAATGTCA+TGG | - | chr3.4:30402477-30402496 | MS.gene03567:CDS | 45.0% | |
| TGCTCCTAATGTCATGGACA+TGG | - | chr3.4:30402483-30402502 | MS.gene03567:CDS | 45.0% | |
| TGGTACTAGTTGTGACCGAA+AGG | - | chr3.4:30402372-30402391 | MS.gene03567:CDS | 45.0% | |
| ! | ACAGCTGTGTCGGTAAACTT+TGG | + | chr3.4:30402028-30402047 | None:intergenic | 45.0% |
| ! | CTGTATGGCTGATTCAATGG+TGG | - | chr3.4:30401700-30401719 | MS.gene03567:CDS | 45.0% |
| !! | CAATGGTGGATGCTTCCTAT+GGG | - | chr3.4:30401714-30401733 | MS.gene03567:CDS | 45.0% |
| !! | TCAATGGTGGATGCTTCCTA+TGG | - | chr3.4:30401713-30401732 | MS.gene03567:CDS | 45.0% |
| !! | TGGCGCTGATATCAATTGTG+TGG | - | chr3.4:30401802-30401821 | MS.gene03567:CDS | 45.0% |
| !!! | GAAGGACTGGTTTTATCACC+TGG | - | chr3.4:30401896-30401915 | MS.gene03567:CDS | 45.0% |
| AGAATGGTGCGATACCGATC+TGG | + | chr3.4:30402343-30402362 | None:intergenic | 50.0% | |
| CGCACCATTCTCTGCAAAGA+TGG | - | chr3.4:30402352-30402371 | MS.gene03567:CDS | 50.0% | |
| CTTCCTGGAAAGTGAAGAGC+TGG | + | chr3.4:30402607-30402626 | None:intergenic | 50.0% | |
| GAATGGTGCGATACCGATCT+GGG | + | chr3.4:30402342-30402361 | None:intergenic | 50.0% | |
| GATAAAGGGGCAGCTGAATG+AGG | + | chr3.4:30401968-30401987 | None:intergenic | 50.0% | |
| GCAGCCATGTCCATGACATT+AGG | + | chr3.4:30402490-30402509 | None:intergenic | 50.0% | |
| GCTGCTGACCATGAATGTCT+TGG | + | chr3.4:30402639-30402658 | None:intergenic | 50.0% | |
| GTAAATGCTGCTGATGCTGC+TGG | - | chr3.4:30401782-30401801 | MS.gene03567:CDS | 50.0% | |
| TAGGAGCAGATGCAGCTGAT+CGG | + | chr3.4:30402471-30402490 | None:intergenic | 50.0% | |
| TCACTGAAATGGCACCAGGA+CGG | + | chr3.4:30402696-30402715 | None:intergenic | 50.0% | |
| ! | AACAGGTCGGCTCACTGAAA+TGG | + | chr3.4:30402707-30402726 | None:intergenic | 50.0% |
| ! | CTCATGGACTATTCGAGACC+TGG | - | chr3.4:30402311-30402330 | MS.gene03567:CDS | 50.0% |
| ! | GGAGAGATGCCGTTTGCATA+TGG | + | chr3.4:30402568-30402587 | None:intergenic | 50.0% |
| !! | AAACTTTGGAGCCACAGGAG+AGG | + | chr3.4:30402014-30402033 | None:intergenic | 50.0% |
| !! | TCGGTAAACTTTGGAGCCAC+AGG | + | chr3.4:30402019-30402038 | None:intergenic | 50.0% |
| ACTGAAATGGCACCAGGACG+GGG | + | chr3.4:30402694-30402713 | None:intergenic | 55.0% | |
| AGACCTGGCTACACCCAGAT+CGG | - | chr3.4:30402326-30402345 | MS.gene03567:CDS | 55.0% | |
| AGGAGCAGATGCAGCTGATC+GGG | + | chr3.4:30402470-30402489 | None:intergenic | 55.0% | |
| ATACCGATCTGGGTGTAGCC+AGG | + | chr3.4:30402332-30402351 | None:intergenic | 55.0% | |
| CACTGAAATGGCACCAGGAC+GGG | + | chr3.4:30402695-30402714 | None:intergenic | 55.0% | |
| GATGCAGCTGATCGGGGTAA+AGG | + | chr3.4:30402463-30402482 | None:intergenic | 55.0% | |
| GCAGCATTTACACCAGCCTC+TGG | + | chr3.4:30401773-30401792 | None:intergenic | 55.0% | |
| GCTGCTACGAGCCTTTATCG+TGG | - | chr3.4:30402508-30402527 | MS.gene03567:CDS | 55.0% | |
| GGATGCTGATGGAAACCGTC+TGG | - | chr3.4:30401823-30401842 | MS.gene03567:CDS | 55.0% | |
| TGAGCCGACCTGTTAACTCC+TGG | - | chr3.4:30402713-30402732 | MS.gene03567:CDS | 55.0% | |
| TGCTGATGGAAACCGTCTGG+TGG | - | chr3.4:30401826-30401845 | MS.gene03567:CDS | 55.0% | |
| TGGATCTCCATCCTCTCCTG+TGG | - | chr3.4:30402000-30402019 | MS.gene03567:CDS | 55.0% | |
| TGGCCAGCTCTTCACTTTCC+AGG | - | chr3.4:30402601-30402620 | MS.gene03567:CDS | 55.0% | |
| ! | TTTGGAGCCACAGGAGAGGA+TGG | + | chr3.4:30402010-30402029 | None:intergenic | 55.0% |
| ACACCAGCCTCTGGACCTGA+CGG | + | chr3.4:30401764-30401783 | None:intergenic | 60.0% | |
| AGGGCATGGCACACAGCTGT+AGG | + | chr3.4:30402245-30402264 | None:intergenic | 60.0% | |
| CGGCTCACTGAAATGGCACC+AGG | + | chr3.4:30402700-30402719 | None:intergenic | 60.0% | |
| GGAGCAGATGCAGCTGATCG+GGG | + | chr3.4:30402469-30402488 | None:intergenic | 60.0% | |
| GGTTACACCGTCAGGTCCAG+AGG | - | chr3.4:30401754-30401773 | MS.gene03567:CDS | 60.0% | |
| TGTTTCTCACAGCCCCGTCC+TGG | - | chr3.4:30402679-30402698 | MS.gene03567:CDS | 60.0% | |
| ACACCGTCAGGTCCAGAGGC+TGG | - | chr3.4:30401758-30401777 | MS.gene03567:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 30401599 | 30402879 | 30401599 | ID=MS.gene03567 |
| chr3.4 | mRNA | 30401599 | 30402879 | 30401599 | ID=MS.gene03567.t1;Parent=MS.gene03567 |
| chr3.4 | exon | 30401599 | 30402879 | 30401599 | ID=MS.gene03567.t1.exon1;Parent=MS.gene03567.t1 |
| chr3.4 | CDS | 30401599 | 30402879 | 30401599 | ID=cds.MS.gene03567.t1;Parent=MS.gene03567.t1 |
| Gene Sequence |
| Protein sequence |
