AlfalfaGEDB | MS.gene035691

M. sativa cultivar XinJiangDaYe / MS.gene035691

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00564.27 PF07714.20

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene035691.t1	RHN64775.1	97.2	1084	30	0	1	1084	25	1108	0.00E+00	2164.4

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene035691.t1	Q9C9U5	39.6	268	145	6	817	1081	754	1007	5.2e-47	191.4

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene035691.t1	A0A396ILN3	97.2	1084	30	0	1	1084	25	1108	0.0e+00	2164.4

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene035691.t1	MTR_4g128650	97.140	1084	31	0	1	1084	1	1084	0.0	2184
MS.gene035691.t1	MTR_6g033130	67.702	322	101	2	765	1084	920	1240	1.20e-143	463
MS.gene035691.t1	MTR_6g033130	48.408	157	74	2	10	159	170	326	1.43e-31	134
MS.gene035691.t1	MTR_1g090020	51.936	439	187	6	652	1084	753	1173	1.07e-140	454
MS.gene035691.t1	MTR_1g090020	54.369	103	47	0	26	128	192	294	1.45e-28	124
MS.gene035691.t1	MTR_2g461180	72.695	282	77	0	803	1084	1119	1400	1.20e-139	456
MS.gene035691.t1	MTR_2g461180	46.584	161	79	3	2	155	186	346	3.00e-33	140
MS.gene035691.t1	MTR_8g442400	62.059	340	112	2	755	1081	1321	1656	3.75e-139	459
MS.gene035691.t1	MTR_8g442400	46.809	141	68	2	28	161	179	319	1.02e-27	122
MS.gene035691.t1	MTR_4g116520	70.609	279	82	0	803	1081	1084	1362	3.59e-134	441

Showing 1 to 10 of 507 entries

Previous1 2 3 4 5…51Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene035691.t1	AT5G57610	52.603	1114	400	28	22	1084	18	1054	0.0	1018
MS.gene035691.t1	AT3G24715	71.821	291	82	0	794	1084	819	1109	9.39e-144	460
MS.gene035691.t1	AT3G24715	44.882	127	67	1	27	153	175	298	1.10e-23	108
MS.gene035691.t1	AT3G24715	71.821	291	82	0	794	1084	819	1109	9.39e-144	460
MS.gene035691.t1	AT3G24715	44.882	127	67	1	27	153	175	298	1.10e-23	108
MS.gene035691.t1	AT3G24715	71.821	291	82	0	794	1084	819	1109	9.39e-144	460
MS.gene035691.t1	AT3G24715	44.882	127	67	1	27	153	175	298	1.10e-23	108
MS.gene035691.t1	AT1G79570	72.500	280	77	0	802	1081	955	1234	2.11e-143	462
MS.gene035691.t1	AT1G79570	47.973	148	73	2	14	159	165	310	5.61e-31	132
MS.gene035691.t1	AT1G79570	72.500	280	77	0	802	1081	955	1234	2.11e-143	462

Showing 1 to 10 of 518 entries

Previous1 2 3 4 5…52Next

Find 312 sgRNAs with CRISPR-Local

Find 407 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGAGGGAGCTGTATGA+AGG	0.570720	8.4:-5902051	MS.gene035691:CDS
AAACAACACACTCTAGTGTC+AGG	0.539743	8.4:-5898614	MS.gene035691:CDS
AACAACAGAAGCAGCGGTGT+TGG	0.471036	8.4:+5900235	None:intergenic
AACACACTCTAGTGTCAGGA+GGG	0.605131	8.4:-5898610	MS.gene035691:CDS
AACCGGTTGATGAACATGAT+TGG	0.473193	8.4:+5900955	None:intergenic
AACCGGTTGGACCTGAATTG+GGG	0.524318	8.4:-5900940	MS.gene035691:CDS
AACGTTGTTTGGTTGCCTAC+TGG	0.395575	8.4:-5901355	MS.gene035691:CDS
AACTTCCCATCTTGTGGACG+TGG	0.587859	8.4:+5902144	None:intergenic
AACTTTGGAGCATTTGCATG+AGG	0.569354	8.4:+5900557	None:intergenic
AAGCAATATGGTGTCAGAAA+AGG	0.518988	8.4:-5898540	MS.gene035691:intron

Showing 1 to 10 of 312 entries

Previous1 2 3 4 5…32Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ATAAATGCTGGAATAATGAG+GGG	-	chr8.4:5899596-5899615	MS.gene035691:CDS	30.0%
ATAATGGTTATGAGGAAGAT+GGG	+	chr8.4:5900556-5900575	None:intergenic	30.0%
ATGCATTGTGCTTCAATAAT+AGG	-	chr8.4:5901920-5901939	MS.gene035691:CDS	30.0%
ATTGTGCTTCAATAATAGGT+GGG	-	chr8.4:5901924-5901943	MS.gene035691:CDS	30.0%
CAGTTATTATCTACTCCATA+AGG	+	chr8.4:5899461-5899480	None:intergenic	30.0%
GATAAATGCTGGAATAATGA+GGG	-	chr8.4:5899595-5899614	MS.gene035691:CDS	30.0%
GTTGATTGCTTCTGTTAAAA+AGG	-	chr8.4:5900192-5900211	MS.gene035691:CDS	30.0%
TAAATATGAGAGATCCACAA+AGG	-	chr8.4:5901475-5901494	MS.gene035691:CDS	30.0%
TAGATTGATGTTTACTCGTT+CGG	-	chr8.4:5901851-5901870	MS.gene035691:CDS	30.0%
TATTACCAATCTTGCTCTTT+CGG	+	chr8.4:5900801-5900820	None:intergenic	30.0%

Showing 1 to 10 of 407 entries

Previous1 2 3 4 5…41Next

Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	5898018	5902283	5898018	ID=MS.gene035691
chr8.4	mRNA	5898018	5902283	5898018	ID=MS.gene035691.t1;Parent=MS.gene035691
chr8.4	exon	5899977	5902283	5899977	ID=MS.gene035691.t1.exon1;Parent=MS.gene035691.t1
chr8.4	CDS	5899977	5902283	5899977	ID=cds.MS.gene035691.t1;Parent=MS.gene035691.t1
chr8.4	exon	5899757	5899861	5899757	ID=MS.gene035691.t1.exon2;Parent=MS.gene035691.t1
chr8.4	CDS	5899757	5899861	5899757	ID=cds.MS.gene035691.t1;Parent=MS.gene035691.t1
chr8.4	exon	5899487	5899639	5899487	ID=MS.gene035691.t1.exon3;Parent=MS.gene035691.t1
chr8.4	CDS	5899487	5899639	5899487	ID=cds.MS.gene035691.t1;Parent=MS.gene035691.t1
chr8.4	exon	5899062	5899225	5899062	ID=MS.gene035691.t1.exon4;Parent=MS.gene035691.t1
chr8.4	CDS	5899062	5899225	5899062	ID=cds.MS.gene035691.t1;Parent=MS.gene035691.t1
chr8.4	exon	5898792	5898939	5898792	ID=MS.gene035691.t1.exon5;Parent=MS.gene035691.t1
chr8.4	CDS	5898792	5898939	5898792	ID=cds.MS.gene035691.t1;Parent=MS.gene035691.t1
chr8.4	exon	5898541	5898663	5898541	ID=MS.gene035691.t1.exon6;Parent=MS.gene035691.t1
chr8.4	CDS	5898541	5898663	5898541	ID=cds.MS.gene035691.t1;Parent=MS.gene035691.t1
chr8.4	exon	5898360	5898447	5898360	ID=MS.gene035691.t1.exon7;Parent=MS.gene035691.t1
chr8.4	CDS	5898360	5898447	5898360	ID=cds.MS.gene035691.t1;Parent=MS.gene035691.t1
chr8.4	exon	5898018	5898184	5898018	ID=MS.gene035691.t1.exon8;Parent=MS.gene035691.t1
chr8.4	CDS	5898018	5898184	5898018	ID=cds.MS.gene035691.t1;Parent=MS.gene035691.t1

Gene Sequence

>MS.gene035691

ATGATGATGGATAGTCCCACAGCCATTAGATCACCGGCCACCACCGGTTCGGGTTCCGGTTCGAACGATGATGGTCGGCGTGTTAAATTTTTGTGTAGCTTTCTAGGTAGCATAATGCCACGTCCACAAGATGGGAAGTTACGTTATGTAGGTGGAGAGACACGAATTGTGAGTGTTTCTAGGGATATTAGTTTTGAGGAGTTGATGGGGAAAATGAGGGAGCTGTATGAAGGTGTTGCTGTGTTGAAGTATCAACAACCTGATGAAGATCTTGATGCACTTGTTTCTGTTGTTAATGATGATGATGTGGTTAATATGATGGAAGAGTATGATAAGTTGGGTTCTGGAGATGGGTTCACTAGGCTTAGGATTTTCTTGTTTTCGCAATTGGAGCAAGATGGTTCGGCACATTTCATTGATGGGGATGATCCTGAGAGGAGGTATGTGGATGCATTGAATAGTTTGAATGATGCTTCTGAGTTAAGGAGGTTGCAACAGATGGAGTTTCCATTGATTGGTACTGTTGAGGATATCCATGTGGGTGATCAGTACATTAGTCCGGTTGGTATGGAAAATGGGATTCTTAGTCAGAGAAGTGGGGAGCTAGCTATGTCACAATATGGTTTGCATCATATGCCTATTCAGCATCAGCAACCTATGGGCCAGCGGTATAATGAAATCGATGTTCCGTGGAATTCTGGTTATTACTCTCCTAGGCATCACGGTCAGTGTCACCATGATTCTAGAACATCATTGGTTGAGTATCCGTCTTCACCTTCTGGTGCAAGGTACCGAATGCCGTTTCCTGAGATGCCAGATAAGGGAATTGATAGAGTGTCGGACGAGTATGCTCGACATCACGTAAACCACCATCCTGTGTATGATAATCAACCGCAGTATCCGGAAAACGTTGTTTGGTTGCCTACTGGACCAGCACATGGTGGTGATAAGTCTGGTTTTCCAGGCAACGTTCTTCATGGCTCCCATGCTCTTGATGGGAATAATATATGCGAGCACTGTCGTATGAGTTTTCAGAGGCCTCAACCACATCTGGAGCATCCTAATATGCTTCCACCTGTTGCCATTCCATGTCCAGAATGTCATTCAAGCAGGGATGCTCTCATAGTGAATGCTGATGCCAAGTTACAACCTCCTATGTATCCCAATGATACTCAGAATCATGAGAGAGGATGTGGTTTGCAGCATCAAAATTCTGGAAGAGTGGGTGATCATTATGTTGGTGATGTTCCTATCATTAGTTTCTCTCCCGGACATGGTAGTATGATTGATGGACATGCTCTTCCTTCCAATCATGTTCATCAACCGGTTGGACCTGAATTGGGGGTTGAACTGTTCCCTGACCAAACCATGGCTGCTATACCGCATCTAAAAATTCCTCCACCGGAAGAATCCAGTGTGCAGTATGGAAATCCACCTTCTCCTTATGGAGTAGATAATAACTGTGCCATGCCTCGTGGACAAGCACCCGGTTATACTCTCTGGAGAAACGGGCCGACTCCGGTTCATATTGGACCACCGCATGAGGCAACTACGCTACCTCAGCCGGTTGATGGTGTGATAAATGCTGGAATAATGAGGGGAGAGGGCAGTCCAGGATTTTTTGTTGGACCAGATAGTCAAAGTCTTTGGGTTGATTCCTCACAGAAATTTTCAGGTCATGATGGGTCAGCCACCCCAGAATACCCTCATGCAAATGCTCCAAAGTTGAATCCAATGGCTATTGGTCAGGAAAATCCACACCCGATTATTGTAGATGCCATCCATCCTCTGCAGGATGTAAACGCTAGTACCTACTTGGAACCTGTGCAGCTGCAAAAATCTTCATTTCATATGGTTCACAATAATGGGGTTTTAAAAAATGATGCTCATTTGACTGAAGGGATTAGTTTGCAATCTATAAGTTTGCTTGGAGAAAAACAAGAAGCAAAAAAAGAGGGTACAGTTGAAAAATCTAATGTGCAAAGTATATCTTTTCCGGAACAAAATCAAATTGTTGGAGATGTATCCAACACCGCTGCTTCTGTTGTTGAATGTGATAATTCATTTTCGAAACCTGCATCAGGGTGTGAACATGGCAAGAAAGTGGCTGATAAGGGTTGTTCTACTCCTGAAGATTCTAAAGGTTTAGTTGATCAATTTAATATCTTGCCTGAGTTGATTGCTTCTGTTAAAAAGGCTGCGTTAGAATGCCAAGACGAGGTGAAACCTACAGTTAAAGAGAATGCCAATTGCCAGATGGACAATTCGAATACCAAAGAAGAAAAGGCGAATGAAGTTGAACCAGTGGTGAGGAAGTGATTTTGTTTTCTTCTTTCAAAAGTAAAATGTGGTTATTTTTTCCCCTGAGAAGTGTGGTGTGTCACATTGGTTTATATGTTATTTGTATTTATTTGTTATGTAGAATGTTCATGGTGATTTAGAACTGGACTCCGAAAACGACCGTGTTGATACTTCTAAAATCGAGCCTACGAAGGCTGAGGCAGAAGCAATTGCCAGGGGATTGCAGGTTTTCATCCCATCTTCCTCATAACCATTATGTTCATATCACTTTTTGTTTGAGGTCTTTTATGGTCTTTCTTATCCCACATGACCCAATTTTGATGGTTGGCTGATATTTTTTCAGACGATTAAAAATGATGATTTGGAGGAGATCCGTGAGCTAGGTTCTGGAACTTATGGAGCTGTTTATCATGGGAAGTGGAAAGGTTCTGATGTCGCCATTAAGAGAATAAAAGCTAGTTGTTTTGCTGGAAGACCATCCGAAAGAGCAAGATTGGTAATATTAGTATCTAATAGCTTTTCATATTGTTTAAGTAACTGTTGATTGGTGATATTAGAATGCTTAATATTTTGTTCTATATAGAAATGCACTCAATTTGTGTTGGATGAAAAAAACAATCTGAATTTCCCCATTTTAAGTATATTAAAATAGGGAAATGATAAAACAAGTAAAAATACTTACAAGTAGTTTTGTCTATATTAAAACATTCAGTGGATGCCCAACTCTGTAGTGACTTCATTTTGGTTGTTGTCCTAGATTGCCGATTTCTGGAAGGAGGCATTGATGCTTAGTTCATTGCATCATCCAAATGTTGTCTCTTTCTATGGTATTGTTCGTGATGGCCCTGATGGCTCTTTAGCTACAGTGACAGAATTCATGGTTAATGGATCTTTGAAACAGTTCTTGCATAAGAAGGACAGGTAATGTGACTCATGCGTGAGTTTACATTTCATCCATACTTGAAAATATTTTCAAGCCCTCTGAGAATTTTATGGACTGGTGATATATTATTTATGTTGTTTTTCTCTGAGGAATTTAACAGAACGATAGATCGACGGAAGAGGCTCATTATAGCCATGGATGCTGCATTTGGGATGGAGTATTTGCATGGAAAGAACATTGTTCATTTTGATTTGAAATGCGAGAATCTATTGGTAAATATGAGAGATCCACAAAGGCCTGTCTGCAAGGTACTCACAAGCATTGCAATAAAATAATTCATTATCTACTCTAAATATAGACAAATTTCATATGGAGGTACACACACATACACAGCAACCTGCTATAAGAGATTTAGACAATGTCTGTGTTTTTTCAGATTGGTGATTTGGGTCTATCAAAGGTTAAACAACACACTCTAGTGTCAGGAGGGGTACGCGGAACTTTGCCGTGGATGGCACCTGAACTTCTTAGCGGGAAAAGCAATATGGTGTCAGAAAAGGTATTATCGGCATAGCTGTTTGACTTTGCGATTCTAATATCCCTTTAATCTTTTCAGATGATCTTCTTACACATATACTTGCTTGTGCTGTAGATTGATGTTTACTCGTTCGGGATAGTCATGTGGGAATTACTCACTGGCGATGAACCTTATGCTGATATGCATTGTGCTTCAATAATAGGTGGGAACCAAGTAACAAACTAAATGCACAGAGAAGTTTGTTTTGTTGCATGTTATGAGTTATCTTCCTCTTTAGACCTTAAATTGATTCGACCATATATTTTGAAATTTCAAACCTTTTCCGGGTCAGAAGATCATACTGCATATCAATGTTTACTATTGTCTTTGTTTTGAAGGAGGAATTGTGAACAACACTTTACGTCCACAAATCCCTACATGGTGTGATCCTGAGTGGAAATCTCTCATGGAAAGTTCTTGGGCTTCTGATCCTGTAGAAAGACCATCATTTTCAGAAATTTCCAAGAAGCTGAGAAGTATGGCTGCTTCAGTGAATGTGAAATAG

Protein sequence

>MS.gene035691.t1

MMMDSPTAIRSPATTGSGSGSNDDGRRVKFLCSFLGSIMPRPQDGKLRYVGGETRIVSVSRDISFEELMGKMRELYEGVAVLKYQQPDEDLDALVSVVNDDDVVNMMEEYDKLGSGDGFTRLRIFLFSQLEQDGSAHFIDGDDPERRYVDALNSLNDASELRRLQQMEFPLIGTVEDIHVGDQYISPVGMENGILSQRSGELAMSQYGLHHMPIQHQQPMGQRYNEIDVPWNSGYYSPRHHGQCHHDSRTSLVEYPSSPSGARYRMPFPEMPDKGIDRVSDEYARHHVNHHPVYDNQPQYPENVVWLPTGPAHGGDKSGFPGNVLHGSHALDGNNICEHCRMSFQRPQPHLEHPNMLPPVAIPCPECHSSRDALIVNADAKLQPPMYPNDTQNHERGCGLQHQNSGRVGDHYVGDVPIISFSPGHGSMIDGHALPSNHVHQPVGPELGVELFPDQTMAAIPHLKIPPPEESSVQYGNPPSPYGVDNNCAMPRGQAPGYTLWRNGPTPVHIGPPHEATTLPQPVDGVINAGIMRGEGSPGFFVGPDSQSLWVDSSQKFSGHDGSATPEYPHANAPKLNPMAIGQENPHPIIVDAIHPLQDVNASTYLEPVQLQKSSFHMVHNNGVLKNDAHLTEGISLQSISLLGEKQEAKKEGTVEKSNVQSISFPEQNQIVGDVSNTAASVVECDNSFSKPASGCEHGKKVADKGCSTPEDSKGLVDQFNILPELIASVKKAALECQDEVKPTVKENANCQMDNSNTKEEKANEVEPVNVHGDLELDSENDRVDTSKIEPTKAEAEAIARGLQTIKNDDLEEIRELGSGTYGAVYHGKWKGSDVAIKRIKASCFAGRPSERARLIADFWKEALMLSSLHHPNVVSFYGIVRDGPDGSLATVTEFMVNGSLKQFLHKKDRTIDRRKRLIIAMDAAFGMEYLHGKNIVHFDLKCENLLVNMRDPQRPVCKIGDLGLSKVKQHTLVSGGVRGTLPWMAPELLSGKSNMVSEKIDVYSFGIVMWELLTGDEPYADMHCASIIGGIVNNTLRPQIPTWCDPEWKSLMESSWASDPVERPSFSEISKKLRSMAASVNVK