AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene03577

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene03577.t1 MTR_3g039990 100.000 87 0 0 1 87 2 88 5.24e-62 190
MS.gene03577.t1 MTR_0140s0030 91.954 87 7 0 1 87 2 88 6.32e-58 180
MS.gene03577.t1 MTR_0489s0020 91.954 87 7 0 1 87 2 88 6.32e-58 180
MS.gene03577.t1 MTR_6g012180 90.805 87 8 0 1 87 1 87 5.83e-57 177
MS.gene03577.t1 MTR_7g087130 89.655 87 9 0 1 87 1 87 1.69e-54 172
MS.gene03577.t1 MTR_7g010210 87.356 87 11 0 1 87 1 87 1.76e-53 169
MS.gene03577.t1 MTR_7g010210 87.356 87 11 0 1 87 1 87 2.39e-53 167
MS.gene03577.t1 MTR_1g076150 67.816 87 28 0 1 87 1 87 3.21e-41 135
MS.gene03577.t1 MTR_6g012690 67.816 87 28 0 1 87 1 87 3.89e-41 138
MS.gene03577.t1 MTR_4g478180 67.816 87 28 0 1 87 2 88 8.52e-41 137
MS.gene03577.t1 MTR_7g011170 70.115 87 26 0 1 87 1 87 9.14e-41 135
MS.gene03577.t1 MTR_3g074520 64.368 87 31 0 1 87 1 87 2.64e-39 133
MS.gene03577.t1 MTR_1g043050 66.667 87 29 0 1 87 1 87 2.77e-39 130
MS.gene03577.t1 MTR_2g089620 65.517 87 30 0 1 87 1 87 6.07e-39 131
MS.gene03577.t1 MTR_1g043080 65.517 87 30 0 1 87 1 87 2.05e-38 128
MS.gene03577.t1 MTR_7g076740 65.909 88 29 1 1 87 1 88 2.29e-38 129
MS.gene03577.t1 MTR_1g100653 65.517 87 30 0 1 87 1 87 2.92e-38 129
MS.gene03577.t1 MTR_4g082290 66.667 87 29 0 1 87 1 87 8.43e-38 130
MS.gene03577.t1 MTR_7g096930 62.069 87 33 0 1 87 1 87 1.21e-37 127
MS.gene03577.t1 MTR_4g121460 65.517 87 30 0 1 87 1 87 2.11e-37 127
MS.gene03577.t1 MTR_7g115650 59.770 87 35 0 1 87 1 87 3.86e-37 124
MS.gene03577.t1 MTR_5g029840 64.368 87 31 0 1 87 1 87 1.28e-36 125
MS.gene03577.t1 MTR_4g082230 65.517 87 30 0 1 87 1 87 3.29e-36 126
MS.gene03577.t1 MTR_2g011660 65.909 88 29 1 1 87 1 88 3.35e-36 125
MS.gene03577.t1 MTR_8g027345 59.770 87 35 0 1 87 1 87 3.39e-36 124
MS.gene03577.t1 MTR_5g007370 60.920 87 34 0 1 87 1 87 6.24e-36 123
MS.gene03577.t1 MTR_2g034790 62.069 87 33 0 1 87 1 87 9.09e-36 123
MS.gene03577.t1 MTR_7g117730 58.621 87 36 0 1 87 1 87 1.57e-35 121
MS.gene03577.t1 MTR_4g073420 62.069 87 33 0 1 87 1 87 1.77e-35 121
MS.gene03577.t1 MTR_5g007300 60.920 87 34 0 1 87 53 139 2.15e-35 117
MS.gene03577.t1 MTR_4g091490 64.773 88 30 1 1 87 1 88 2.70e-35 122
MS.gene03577.t1 MTR_8g031360 62.921 89 31 2 1 87 1 89 9.28e-35 120
MS.gene03577.t1 MTR_3g097450 60.920 87 34 0 1 87 1 87 3.77e-34 118
MS.gene03577.t1 MTR_3g461490 60.920 87 34 0 1 87 1 87 4.49e-34 119
MS.gene03577.t1 MTR_5g078140 60.920 87 34 0 1 87 1 87 5.56e-34 118
MS.gene03577.t1 MTR_3g065440 60.920 87 34 0 1 87 1 87 5.73e-34 118
MS.gene03577.t1 MTR_2g067420 57.647 85 36 0 3 87 5 89 1.61e-33 117
MS.gene03577.t1 MTR_4g125520 59.770 87 35 0 1 87 1 87 1.38e-32 114
MS.gene03577.t1 MTR_4g102380 59.770 87 35 0 1 87 1 87 2.23e-32 113
MS.gene03577.t1 MTR_7g102110 59.091 88 35 1 1 87 1 88 3.70e-32 112
MS.gene03577.t1 MTR_5g079670 59.302 86 35 0 2 87 1 86 5.55e-32 110
MS.gene03577.t1 MTR_2g089450 58.621 87 36 0 1 87 1 87 7.31e-32 111
MS.gene03577.t1 MTR_8g095390 57.471 87 37 0 1 87 1 87 8.61e-32 112
MS.gene03577.t1 MTR_3g083540 57.831 83 35 0 5 87 34 116 1.03e-31 112
MS.gene03577.t1 MTR_2g095520 59.770 87 34 1 1 86 1 87 1.16e-31 112
MS.gene03577.t1 MTR_6g009430 55.814 86 38 0 1 86 1 86 2.74e-31 112
MS.gene03577.t1 MTR_0008s0470 55.682 88 38 1 1 87 1 88 4.05e-31 110
MS.gene03577.t1 MTR_0063s0090 56.322 87 38 0 1 87 1 87 4.50e-31 108
MS.gene03577.t1 MTR_3g103570 59.091 88 35 1 1 87 1 88 4.79e-31 111
MS.gene03577.t1 MTR_4g057635 56.818 88 37 1 1 87 1 88 1.55e-30 109
MS.gene03577.t1 MTR_7g111290 59.770 87 35 0 1 87 1 87 1.67e-30 110
MS.gene03577.t1 MTR_1g085040 58.621 87 36 0 1 87 1 87 2.08e-30 110
MS.gene03577.t1 MTR_0008s0280 55.172 87 39 0 1 87 1 87 4.02e-30 106
MS.gene03577.t1 MTR_0008s0390 55.682 88 38 1 1 87 1 88 9.05e-30 106
MS.gene03577.t1 MTR_0251s0050 55.682 88 38 1 1 87 1 88 9.85e-30 106
MS.gene03577.t1 MTR_2g064160 57.317 82 35 0 6 87 5 86 1.17e-29 107
MS.gene03577.t1 MTR_4g097570 55.172 87 38 1 1 86 1 87 1.30e-29 106
MS.gene03577.t1 MTR_1g017140 56.322 87 37 1 1 86 1 87 1.43e-29 107
MS.gene03577.t1 MTR_5g014990 55.682 88 38 1 1 87 1 88 1.82e-29 106
MS.gene03577.t1 MTR_1g017000 53.409 88 40 1 1 87 1 88 3.02e-29 104
MS.gene03577.t1 MTR_7g109320 58.621 87 36 0 1 87 1 87 3.95e-29 106
MS.gene03577.t1 MTR_5g042030 58.974 78 32 0 10 87 5 82 4.65e-29 105
MS.gene03577.t1 MTR_2g099740 57.317 82 35 0 6 87 6 87 6.53e-29 106
MS.gene03577.t1 MTR_2g089420 57.471 87 36 1 1 87 1 86 7.09e-29 107
MS.gene03577.t1 MTR_4g128670 56.322 87 37 1 1 86 1 87 7.99e-29 105
MS.gene03577.t1 MTR_4g485530 54.023 87 40 0 1 87 1 87 1.08e-28 102
MS.gene03577.t1 MTR_6g090405 56.818 88 37 1 1 87 1 88 1.23e-28 103
MS.gene03577.t1 MTR_4g105130 55.172 87 39 0 1 87 1 87 1.23e-28 105
MS.gene03577.t1 MTR_8g017500 56.098 82 36 0 6 87 6 87 1.41e-28 105
MS.gene03577.t1 MTR_1g085640 55.172 87 39 0 1 87 1 87 1.46e-28 105
MS.gene03577.t1 MTR_7g110830 55.172 87 39 0 1 87 1 87 1.59e-28 105
MS.gene03577.t1 MTR_8g098860 55.172 87 39 0 1 87 1 87 1.85e-28 104
MS.gene03577.t1 MTR_3g052430 57.895 76 32 0 12 87 41 116 5.49e-28 105
MS.gene03577.t1 MTR_4g097570 54.545 88 38 2 1 86 1 88 6.10e-28 102
MS.gene03577.t1 MTR_8g017440 56.098 82 36 0 6 87 6 87 9.43e-28 102
MS.gene03577.t1 MTR_5g010020 57.317 82 35 0 6 87 6 87 9.66e-28 102
MS.gene03577.t1 MTR_8g042410 57.895 76 32 0 12 87 37 112 2.64e-27 103
MS.gene03577.t1 MTR_3g052450 53.750 80 37 0 8 87 36 115 3.82e-27 102
MS.gene03577.t1 MTR_3g077110 55.172 87 39 0 1 87 1 87 3.84e-27 101
MS.gene03577.t1 MTR_8g017540 56.098 82 36 0 6 87 52 133 3.99e-27 101
MS.gene03577.t1 MTR_1g112760 55.294 85 38 0 3 87 4 88 6.22e-27 98.6
MS.gene03577.t1 MTR_6g055910 55.000 80 36 0 8 87 10 89 3.42e-26 97.8
MS.gene03577.t1 MTR_4g100720 56.962 79 34 0 9 87 10 88 3.96e-26 94.7
MS.gene03577.t1 MTR_3g011610 55.263 76 34 0 12 87 37 112 7.61e-26 99.4
MS.gene03577.t1 MTR_7g035075 56.579 76 33 0 12 87 14 89 9.08e-26 94.7
MS.gene03577.t1 MTR_2g088170 59.494 79 32 0 9 87 26 104 9.30e-26 98.6
MS.gene03577.t1 MTR_8g020490 55.172 87 35 1 1 87 1 83 9.97e-26 95.9
MS.gene03577.t1 MTR_6g006030 50.562 89 42 1 1 87 1 89 2.20e-25 94.0
MS.gene03577.t1 MTR_8g017340 52.273 88 41 1 1 87 1 88 2.50e-25 97.8
MS.gene03577.t1 MTR_1g086530 53.947 76 35 0 12 87 33 108 3.00e-25 95.1
MS.gene03577.t1 MTR_8g017350 52.273 88 41 1 1 87 1 88 3.15e-25 97.8
MS.gene03577.t1 MTR_1g021230 55.263 76 34 0 12 87 57 132 3.60e-25 97.1
MS.gene03577.t1 MTR_1g086510 53.165 79 37 0 9 87 18 96 3.89e-25 94.4
MS.gene03577.t1 MTR_1g100667 58.667 75 31 0 13 87 14 88 4.45e-25 94.4
MS.gene03577.t1 MTR_0247s0040 57.143 77 33 0 11 87 6 82 5.63e-25 92.0
MS.gene03577.t1 MTR_2g097910 55.263 76 34 0 12 87 20 95 5.74e-25 95.1
MS.gene03577.t1 MTR_8g017390 53.012 83 38 1 6 87 6 88 6.80e-25 96.3
MS.gene03577.t1 MTR_0197s0010 59.722 72 29 0 16 87 5 76 7.12e-25 93.2
MS.gene03577.t1 MTR_4g065017 56.579 76 33 0 12 87 17 92 1.38e-24 94.4
MS.gene03577.t1 MTR_0193s0090 55.844 77 34 0 11 87 6 82 1.70e-24 91.7
MS.gene03577.t1 MTR_1g045610 56.000 75 33 0 13 87 22 96 2.00e-24 92.4
MS.gene03577.t1 MTR_5g079120 54.430 79 36 0 9 87 58 136 2.40e-24 93.2
MS.gene03577.t1 MTR_7g017260 55.000 80 34 1 10 87 23 102 4.32e-24 92.0
MS.gene03577.t1 MTR_0023s0210 54.545 77 35 0 11 87 6 82 4.85e-24 87.0
MS.gene03577.t1 MTR_3g028740 53.165 79 37 0 9 87 19 97 5.05e-24 92.8
MS.gene03577.t1 MTR_5g079220 53.086 81 38 0 7 87 16 96 7.29e-24 91.3
MS.gene03577.t1 MTR_1g073170 53.333 75 35 0 13 87 21 95 8.43e-24 90.9
MS.gene03577.t1 MTR_5g079290 55.844 77 34 0 11 87 16 92 1.25e-23 90.5
MS.gene03577.t1 MTR_8g060940 54.545 77 35 0 11 87 6 82 1.42e-23 90.1
MS.gene03577.t1 MTR_5g078950 54.545 77 35 0 11 87 6 82 1.73e-23 90.1
MS.gene03577.t1 MTR_1g110460 48.750 80 41 0 8 87 22 101 4.14e-23 90.1
MS.gene03577.t1 MTR_5g078800 54.545 77 35 0 11 87 6 82 7.37e-23 88.6
MS.gene03577.t1 MTR_2g096380 50.000 76 38 0 12 87 6 81 1.26e-22 87.4
MS.gene03577.t1 MTR_5g078860 54.545 77 35 0 11 87 6 82 1.51e-22 88.6
MS.gene03577.t1 MTR_0001s0360 54.545 77 35 0 11 87 6 82 4.32e-22 86.3
MS.gene03577.t1 MTR_5g078910 53.947 76 35 0 12 87 7 82 4.63e-22 87.0
MS.gene03577.t1 MTR_5g062790 49.275 69 35 0 10 78 7 75 6.66e-22 86.7
MS.gene03577.t1 MTR_5g078930 50.602 83 40 1 6 87 2 84 9.65e-22 84.7
MS.gene03577.t1 MTR_5g088640 47.826 69 36 0 13 81 13 81 6.99e-21 83.6
MS.gene03577.t1 MTR_5g088080 47.826 69 36 0 13 81 13 81 7.58e-21 83.2
MS.gene03577.t1 MTR_5g088150 47.826 69 36 0 13 81 13 81 7.58e-21 83.2
MS.gene03577.t1 MTR_5g488210 47.826 69 36 0 13 81 13 81 7.58e-21 83.2
MS.gene03577.t1 MTR_1g083630 46.835 79 42 0 8 86 8 86 1.68e-20 84.3
MS.gene03577.t1 MTR_5g088610 45.455 77 42 0 10 86 7 83 2.70e-20 82.8
MS.gene03577.t1 MTR_5g488170 44.737 76 42 0 11 86 11 86 3.27e-20 81.3
MS.gene03577.t1 MTR_1g062940 48.684 76 39 0 12 87 6 81 3.34e-20 80.9
MS.gene03577.t1 MTR_2g033170 50.000 62 31 0 8 69 20 81 5.68e-20 81.6
MS.gene03577.t1 MTR_4g029540 45.679 81 43 1 8 87 6 86 7.92e-20 80.9
MS.gene03577.t1 MTR_8g006470 46.753 77 40 1 12 87 10 86 3.68e-19 79.0
MS.gene03577.t1 MTR_4g123040 48.387 62 32 0 8 69 20 81 4.03e-18 76.6
MS.gene03577.t1 MTR_4g063100 42.667 75 43 0 13 87 8 82 1.64e-17 74.3
MS.gene03577.t1 MTR_3g045430 43.182 88 49 1 1 87 1 88 4.89e-17 73.6
MS.gene03577.t1 MTR_1g085880 51.724 58 27 1 12 68 11 68 1.27e-16 70.9
MS.gene03577.t1 MTR_1g085770 51.724 58 27 1 12 68 11 68 5.56e-16 70.9
MS.gene03577.t1 MTR_4g019370 44.595 74 40 1 14 87 38 110 5.56e-16 71.2
MS.gene03577.t1 MTR_7g061550 45.205 73 38 1 17 87 10 82 6.00e-16 70.9
MS.gene03577.t1 MTR_6g015455 43.590 78 35 2 14 87 5 77 6.86e-16 71.2
MS.gene03577.t1 MTR_7g111290 68.182 44 14 0 44 87 2 45 1.89e-15 69.7
MS.gene03577.t1 MTR_5g016510 43.590 78 35 2 14 87 5 77 1.03e-14 67.4
MS.gene03577.t1 MTR_4g094982 42.308 78 36 2 14 87 5 77 1.10e-14 67.0
MS.gene03577.t1 MTR_6g027370 41.667 84 44 2 8 87 89 171 2.28e-13 63.9
MS.gene03577.t1 MTR_3g101290 41.772 79 45 1 9 87 32 109 2.40e-13 62.8
MS.gene03577.t1 MTR_3g463400 35.294 85 54 1 3 87 122 205 3.15e-13 63.5
MS.gene03577.t1 MTR_6g027340 42.466 73 41 1 14 86 16 87 3.41e-13 62.0
MS.gene03577.t1 MTR_4g128190 39.474 76 33 1 11 86 10 72 1.11e-12 61.2
MS.gene03577.t1 MTR_6g055910 62.791 43 16 0 45 87 18 60 1.78e-12 60.8
MS.gene03577.t1 MTR_3g077650 37.500 80 49 1 8 87 175 253 3.18e-12 60.8
MS.gene03577.t1 MTR_6g027360 40.000 75 44 1 12 86 76 149 3.87e-12 60.1
MS.gene03577.t1 MTR_2g096380 58.140 43 18 0 45 87 20 62 4.78e-12 59.3
MS.gene03577.t1 MTR_3g110028 36.486 74 46 1 14 87 85 157 5.16e-12 60.1
MS.gene03577.t1 MTR_5g049190 36.709 79 49 1 9 87 14 91 5.39e-12 59.3
MS.gene03577.t1 MTR_4g105660 36.250 80 50 1 8 87 174 252 6.84e-12 59.7
MS.gene03577.t1 MTR_1g057980 37.662 77 47 1 11 87 77 152 1.02e-11 58.9
MS.gene03577.t1 MTR_5g070020 37.838 74 45 1 14 87 122 194 1.08e-11 58.9
MS.gene03577.t1 MTR_8g017480 50.000 52 26 0 1 52 1 52 1.33e-11 54.7
MS.gene03577.t1 MTR_7g451170 37.838 74 45 1 14 87 191 263 1.88e-11 58.5
MS.gene03577.t1 MTR_1g026870 33.784 74 48 1 14 87 85 157 2.83e-11 58.2
MS.gene03577.t1 MTR_6g074860 39.189 74 44 1 14 87 4 76 5.28e-11 56.6
MS.gene03577.t1 MTR_4g082040 39.189 74 44 1 14 87 105 177 5.42e-11 57.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene03577.t1 AT3G28910 89.655 87 9 0 1 87 1 87 1.97e-56 176
MS.gene03577.t1 AT3G47600 91.954 87 7 0 1 87 1 87 3.32e-56 176
MS.gene03577.t1 AT5G62470 91.954 87 7 0 1 87 1 87 3.68e-56 176
MS.gene03577.t1 AT1G08810 90.805 87 8 0 1 87 1 87 4.83e-56 174
MS.gene03577.t1 AT5G62470 91.954 87 6 1 1 87 1 86 1.38e-54 172
MS.gene03577.t1 AT1G74650 89.655 87 9 0 1 87 1 87 7.72e-54 170
MS.gene03577.t1 AT5G15310 70.115 87 26 0 1 87 1 87 2.98e-41 135
MS.gene03577.t1 AT5G15310 70.115 87 26 0 1 87 1 87 8.92e-41 136
MS.gene03577.t1 AT5G15310 70.115 87 26 0 1 87 1 87 9.06e-41 136
MS.gene03577.t1 AT4G21440 67.816 87 28 0 1 87 1 87 1.70e-40 136
MS.gene03577.t1 AT3G61250 65.517 87 30 0 1 87 1 87 3.29e-40 134
MS.gene03577.t1 AT3G01140 68.966 87 27 0 1 87 1 87 1.12e-39 134
MS.gene03577.t1 AT3G23250 65.517 87 30 0 1 87 1 87 4.46e-39 130
MS.gene03577.t1 AT3G01140 67.816 87 28 0 1 87 44 130 7.10e-39 132
MS.gene03577.t1 AT1G06180 67.816 87 28 0 1 87 1 87 9.07e-39 129
MS.gene03577.t1 AT5G16770 64.368 87 31 0 1 87 1 87 2.06e-38 130
MS.gene03577.t1 AT5G16770 64.368 87 31 0 1 87 1 87 2.06e-38 130
MS.gene03577.t1 AT2G31180 65.517 87 30 0 1 87 1 87 2.06e-38 128
MS.gene03577.t1 AT4G28110 65.517 87 30 0 1 87 1 87 4.26e-38 128
MS.gene03577.t1 AT5G16770 64.368 87 31 0 1 87 1 87 8.43e-38 129
MS.gene03577.t1 AT5G16770 64.368 87 31 0 1 87 1 87 8.43e-38 129
MS.gene03577.t1 AT3G02940 64.368 87 31 0 1 87 1 87 1.59e-37 127
MS.gene03577.t1 AT1G34670 62.069 87 33 0 1 87 1 87 2.45e-37 128
MS.gene03577.t1 AT3G02940 64.368 87 31 0 1 87 1 87 3.03e-37 127
MS.gene03577.t1 AT3G02940 64.368 87 31 0 1 87 1 87 3.03e-37 127
MS.gene03577.t1 AT5G60890 60.920 87 34 0 1 87 1 87 6.12e-37 125
MS.gene03577.t1 AT1G56160 61.176 85 33 0 3 87 5 89 1.62e-36 124
MS.gene03577.t1 AT4G09460 63.218 87 32 0 1 87 1 87 2.52e-36 122
MS.gene03577.t1 AT1G35515 60.920 87 34 0 1 87 1 87 2.71e-36 122
MS.gene03577.t1 AT4G05100 64.773 88 30 1 1 87 1 88 1.11e-35 123
MS.gene03577.t1 AT1G22640 62.069 87 33 0 1 87 1 87 1.34e-35 121
MS.gene03577.t1 AT1G79180 62.353 85 32 0 3 87 5 89 1.37e-35 122
MS.gene03577.t1 AT4G38620 62.069 87 33 0 1 87 1 87 3.75e-35 120
MS.gene03577.t1 AT2G16720 63.218 87 32 0 1 87 1 87 3.80e-35 120
MS.gene03577.t1 AT5G49330 62.069 87 33 0 1 87 1 87 5.48e-35 121
MS.gene03577.t1 AT5G07690 60.920 87 34 0 1 87 1 87 8.34e-35 121
MS.gene03577.t1 AT5G61420 60.920 87 34 0 1 87 1 87 1.22e-34 121
MS.gene03577.t1 AT1G74080 60.920 87 34 0 1 87 1 87 1.26e-34 120
MS.gene03577.t1 AT1G66230 60.920 87 34 0 1 87 1 87 1.29e-34 119
MS.gene03577.t1 AT4G17785 64.773 88 30 1 1 87 1 88 1.58e-34 120
MS.gene03577.t1 AT4G17785 64.773 88 30 1 1 87 1 88 2.03e-34 120
MS.gene03577.t1 AT1G18570 62.500 88 32 1 1 87 1 88 2.19e-34 120
MS.gene03577.t1 AT5G10280 58.621 87 36 0 1 87 1 87 2.85e-34 119
MS.gene03577.t1 AT4G34990 62.069 87 33 0 1 87 1 87 3.85e-34 118
MS.gene03577.t1 AT1G16490 57.647 85 36 0 3 87 5 89 4.19e-34 117
MS.gene03577.t1 AT5G56110 59.770 87 35 0 1 87 1 87 1.78e-33 117
MS.gene03577.t1 AT3G13540 61.446 83 32 0 5 87 16 98 1.93e-33 115
MS.gene03577.t1 AT5G54230 71.053 76 22 0 12 87 12 87 3.56e-33 116
MS.gene03577.t1 AT2G47460 58.621 87 36 0 1 87 1 87 5.09e-33 117
MS.gene03577.t1 AT5G65230 57.471 87 37 0 1 87 1 87 8.00e-33 115
MS.gene03577.t1 AT3G12820 61.176 85 33 0 3 87 5 89 1.13e-32 113
MS.gene03577.t1 AT3G62610 60.465 86 34 0 1 86 1 86 1.36e-32 115
MS.gene03577.t1 AT4G12350 59.770 87 35 0 1 87 1 87 1.60e-32 114
MS.gene03577.t1 AT4G37780 55.682 88 38 1 1 87 1 88 1.62e-32 114
MS.gene03577.t1 AT5G16600 56.322 87 38 0 1 87 1 87 3.97e-31 111
MS.gene03577.t1 AT4G22680 58.621 87 36 0 1 87 1 87 4.42e-31 110
MS.gene03577.t1 AT5G14340 58.621 87 36 0 1 87 13 99 4.68e-31 110
MS.gene03577.t1 AT5G07700 58.621 87 36 0 1 87 1 87 7.52e-31 110
MS.gene03577.t1 AT5G07700 58.621 87 36 0 1 87 1 87 7.52e-31 110
MS.gene03577.t1 AT3G28470 54.023 87 40 0 1 87 1 87 1.60e-30 109
MS.gene03577.t1 AT4G01680 57.471 87 37 0 1 87 1 87 2.73e-30 107
MS.gene03577.t1 AT5G26660 58.621 87 36 0 1 87 1 87 3.10e-30 109
MS.gene03577.t1 AT1G57560 56.322 87 38 0 1 87 1 87 3.70e-30 108
MS.gene03577.t1 AT1G57560 56.322 87 38 0 1 87 1 87 4.01e-30 107
MS.gene03577.t1 AT5G57620 55.172 87 38 1 1 86 1 87 8.26e-30 108
MS.gene03577.t1 AT5G23000 56.322 87 37 1 1 86 1 87 8.34e-30 108
MS.gene03577.t1 AT3G49690 57.471 87 36 1 1 86 1 87 1.98e-29 106
MS.gene03577.t1 AT4G01680 57.471 87 37 0 1 87 1 87 2.03e-29 107
MS.gene03577.t1 AT1G74430 59.770 87 35 0 1 87 1 87 2.30e-29 105
MS.gene03577.t1 AT1G18710 57.471 87 37 0 1 87 1 87 3.48e-29 105
MS.gene03577.t1 AT1G79180 44.915 118 32 1 3 87 5 122 6.79e-29 105
MS.gene03577.t1 AT1G09540 56.322 87 38 0 1 87 1 87 8.71e-29 105
MS.gene03577.t1 AT3G12720 57.317 82 35 0 6 87 16 97 1.10e-28 104
MS.gene03577.t1 AT2G36890 53.409 88 40 1 1 87 1 88 1.27e-28 104
MS.gene03577.t1 AT5G14750 60.000 75 30 0 13 87 17 91 1.28e-28 102
MS.gene03577.t1 AT2G32460 57.317 82 35 0 6 87 12 93 2.01e-28 106
MS.gene03577.t1 AT5G65790 54.545 88 39 1 1 87 1 88 2.06e-28 105
MS.gene03577.t1 AT2G36890 53.409 88 40 1 1 87 42 129 2.17e-28 104
MS.gene03577.t1 AT3G13890 57.317 82 35 0 6 87 6 87 2.22e-28 104
MS.gene03577.t1 AT2G32460 59.740 77 31 0 11 87 5 81 2.36e-28 105
MS.gene03577.t1 AT5G40330 60.000 75 30 0 13 87 13 87 2.46e-28 101
MS.gene03577.t1 AT5G62320 52.174 92 37 1 3 87 4 95 4.94e-28 101
MS.gene03577.t1 AT5G55020 59.211 76 31 0 12 87 26 101 4.98e-28 105
MS.gene03577.t1 AT1G63910 55.172 87 39 0 1 87 1 87 7.27e-28 103
MS.gene03577.t1 AT3G01530 57.500 80 34 0 8 87 21 100 1.27e-27 99.8
MS.gene03577.t1 AT5G35550 59.211 76 31 0 12 87 14 89 3.63e-27 99.8
MS.gene03577.t1 AT2G26960 58.108 74 31 0 14 87 22 95 6.31e-27 101
MS.gene03577.t1 AT3G11440 53.947 76 35 0 12 87 41 116 1.73e-26 100
MS.gene03577.t1 AT5G06100 53.247 77 36 0 11 87 31 107 2.09e-26 100
MS.gene03577.t1 AT3G11440 53.947 76 35 0 12 87 41 116 2.11e-26 100
MS.gene03577.t1 AT3G11440 53.947 76 35 0 12 87 41 116 2.11e-26 100
MS.gene03577.t1 AT3G11440 53.947 76 35 0 12 87 41 116 2.11e-26 100
MS.gene03577.t1 AT3G27920 55.000 80 36 0 8 87 10 89 2.72e-26 96.7
MS.gene03577.t1 AT5G06100 53.247 77 36 0 11 87 31 107 3.68e-26 100
MS.gene03577.t1 AT5G06100 53.247 77 36 0 11 87 31 107 3.68e-26 100
MS.gene03577.t1 AT5G06100 53.247 77 36 0 11 87 31 107 3.68e-26 100
MS.gene03577.t1 AT5G06100 53.247 77 36 0 11 87 31 107 3.68e-26 100
MS.gene03577.t1 AT5G52600 55.696 79 35 0 9 87 9 87 3.90e-26 95.5
MS.gene03577.t1 AT4G01680 50.505 99 37 1 1 87 1 99 5.04e-26 98.2
MS.gene03577.t1 AT4G26930 55.263 76 34 0 12 87 19 94 5.59e-26 98.6
MS.gene03577.t1 AT3G27810 55.263 76 34 0 12 87 20 95 1.98e-25 94.4
MS.gene03577.t1 AT3G24310 57.143 77 33 0 11 87 17 93 2.02e-25 95.5
MS.gene03577.t1 AT3G13890 51.648 91 35 1 6 87 6 96 2.11e-25 97.1
MS.gene03577.t1 AT5G40350 55.263 76 34 0 12 87 17 92 3.70e-25 93.6
MS.gene03577.t1 AT4G13480 56.000 75 33 0 13 87 7 81 1.53e-24 92.8
MS.gene03577.t1 AT3G30210 54.545 77 35 0 11 87 26 102 1.74e-24 93.2
MS.gene03577.t1 AT2G47190 50.000 84 42 0 4 87 12 95 2.39e-24 92.8
MS.gene03577.t1 AT1G66370 54.545 77 35 0 11 87 7 83 6.79e-24 90.9
MS.gene03577.t1 AT3G08500 51.316 76 37 0 12 87 30 105 6.85e-24 92.4
MS.gene03577.t1 AT5G12870 53.947 76 35 0 12 87 18 93 7.02e-24 91.7
MS.gene03577.t1 AT1G48000 52.564 78 37 0 10 87 30 107 1.14e-23 90.1
MS.gene03577.t1 AT3G47600 90.698 43 4 0 45 87 39 81 2.40e-23 90.9
MS.gene03577.t1 AT1G25340 50.667 75 37 0 13 87 19 93 5.84e-22 86.7
MS.gene03577.t1 AT3G46130 48.052 77 40 0 11 87 8 84 9.78e-22 85.5
MS.gene03577.t1 AT5G59780 49.333 75 38 0 13 87 9 83 1.29e-21 84.7
MS.gene03577.t1 AT3G48920 49.333 75 38 0 13 87 19 93 1.45e-21 85.1
MS.gene03577.t1 AT1G66380 53.247 77 36 0 11 87 7 83 3.45e-21 80.5
MS.gene03577.t1 AT1G68320 48.684 76 39 0 12 87 19 94 1.06e-20 83.2
MS.gene03577.t1 AT1G66380 53.247 77 36 0 11 87 7 83 1.45e-20 79.7
MS.gene03577.t1 AT3G60460 46.753 77 40 1 12 87 11 87 2.12e-20 82.8
MS.gene03577.t1 AT5G52260 54.667 75 34 0 13 87 13 87 2.97e-20 81.6
MS.gene03577.t1 AT2G26950 48.649 74 38 0 14 87 18 91 4.62e-20 82.4
MS.gene03577.t1 AT5G49620 54.839 62 28 0 8 69 22 83 1.38e-19 80.9
MS.gene03577.t1 AT5G49620 53.968 63 29 0 8 70 22 84 1.42e-19 80.5
MS.gene03577.t1 AT4G25560 50.667 75 37 0 13 87 11 85 1.45e-19 80.1
MS.gene03577.t1 AT3G06490 53.226 62 29 0 8 69 15 76 2.35e-19 80.1
MS.gene03577.t1 AT1G56650 51.948 77 37 0 11 87 7 83 4.78e-19 78.2
MS.gene03577.t1 AT1G66390 54.688 64 29 0 11 74 7 70 7.70e-19 77.8
MS.gene03577.t1 AT3G53200 48.684 76 39 0 12 87 9 84 1.61e-18 76.6
MS.gene03577.t1 AT1G25340 48.000 75 34 1 13 87 19 88 1.68e-18 77.4
MS.gene03577.t1 AT1G25340 48.000 75 34 1 13 87 19 88 2.04e-18 77.4
MS.gene03577.t1 AT3G55730 46.154 78 33 2 14 87 56 128 1.60e-16 72.8
MS.gene03577.t1 AT2G39880 48.718 78 31 2 14 87 50 122 5.19e-16 71.2
MS.gene03577.t1 AT2G23290 46.154 78 33 2 14 87 13 85 7.46e-16 70.5
MS.gene03577.t1 AT4G37260 44.872 78 34 2 14 87 13 85 1.15e-15 70.1
MS.gene03577.t1 AT5G35550 72.093 43 12 0 45 87 50 92 4.22e-15 68.2
MS.gene03577.t1 AT2G37630 42.466 73 40 1 17 87 7 79 6.74e-15 68.2
MS.gene03577.t1 AT3G12820 70.732 41 12 0 47 87 1 41 7.94e-15 66.2
MS.gene03577.t1 AT5G26660 67.442 43 14 0 45 87 14 56 9.62e-15 67.4
MS.gene03577.t1 AT5G14750 65.854 41 14 0 47 87 17 57 3.56e-14 63.9
MS.gene03577.t1 AT5G40360 35.632 87 55 1 1 87 145 230 1.11e-13 64.7
MS.gene03577.t1 AT3G09230 42.308 78 36 2 14 87 55 127 1.40e-13 64.7
MS.gene03577.t1 AT3G50060 39.744 78 38 2 14 87 6 78 1.51e-12 61.2
MS.gene03577.t1 AT3G27785 37.037 81 50 1 7 87 182 261 2.06e-12 61.2
MS.gene03577.t1 AT5G11510 37.838 74 45 1 14 87 81 153 2.12e-12 61.2
MS.gene03577.t1 AT5G11510 37.838 74 45 1 14 87 81 153 2.12e-12 61.2
MS.gene03577.t1 AT5G11510 37.838 74 45 1 14 87 81 153 2.12e-12 61.2
MS.gene03577.t1 AT5G67300 41.026 78 37 2 14 87 6 78 4.21e-12 60.1
MS.gene03577.t1 AT5G02320 39.189 74 44 1 14 87 67 139 4.46e-12 60.5
MS.gene03577.t1 AT5G02320 39.189 74 44 1 14 87 127 199 4.72e-12 60.1
MS.gene03577.t1 AT5G02320 39.189 74 44 1 14 87 127 199 4.72e-12 60.1
MS.gene03577.t1 AT1G69560 39.241 79 47 1 9 87 102 179 5.12e-12 60.1
MS.gene03577.t1 AT1G69560 39.241 79 47 1 9 87 118 195 5.67e-12 60.1
MS.gene03577.t1 AT4G32730 35.135 74 47 1 14 87 87 159 7.55e-12 59.7
MS.gene03577.t1 AT4G32730 35.135 74 47 1 14 87 87 159 7.55e-12 59.7
MS.gene03577.t1 AT4G32730 35.135 74 47 1 14 87 87 159 7.55e-12 59.7
MS.gene03577.t1 AT4G32730 35.135 74 47 1 14 87 87 159 7.55e-12 59.7
MS.gene03577.t1 AT5G11050 36.486 74 46 1 14 87 105 177 8.95e-12 59.3
MS.gene03577.t1 AT4G32730 35.135 74 47 1 14 87 87 159 1.06e-11 59.3
MS.gene03577.t1 AT3G46130 55.556 45 20 0 43 87 8 52 1.92e-11 57.8
MS.gene03577.t1 AT5G11510 37.838 74 45 1 14 87 81 153 2.63e-11 58.2
MS.gene03577.t1 AT1G26780 39.189 74 44 1 14 87 98 170 2.73e-11 58.2
MS.gene03577.t1 AT5G11510 37.838 74 45 1 14 87 81 153 2.79e-11 58.2
MS.gene03577.t1 AT4G18770 33.750 80 52 1 8 87 211 289 3.13e-11 57.8
MS.gene03577.t1 AT5G58850 36.486 74 46 1 14 87 105 177 4.40e-11 57.4
MS.gene03577.t1 AT1G26780 39.189 74 44 1 14 87 98 170 6.21e-11 56.6
MS.gene03577.t1 AT1G17950 37.838 74 45 1 14 87 5 77 9.63e-11 56.2

Find 20 sgRNAs with CRISPR-Local

Find 36 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACCTTGCTGTGAGAAAAT+TGG 0.226124 3.4:-31044002 MS.gene03577:CDS
TCCAGAGGAGGATATAATTT+TGG 0.242453 3.4:-31043958 MS.gene03577:CDS
CACCTTGCTGTGAGAAAATT+GGG 0.291064 3.4:-31044001 MS.gene03577:CDS
AAGAACATGGACCTGGAAAT+TGG 0.305090 3.4:-31043923 MS.gene03577:CDS
GTAAAAGTTGCAGACTTAGA+TGG 0.400469 3.4:-31043518 MS.gene03577:CDS
GGAACTGATCTCCAATTTCC+AGG 0.410901 3.4:+31043912 None:intergenic
GAGAAAATTGGGGTTAAGAA+AGG 0.485693 3.4:-31043990 MS.gene03577:CDS
AGATCAGTTCCCACCACTAC+AGG 0.486392 3.4:-31043900 MS.gene03577:intron
ACCAAAATTATATCCTCCTC+TGG 0.493239 3.4:+31043957 None:intergenic
TATTTCCTAAAAGTGCTTGA+AGG 0.508273 3.4:+31043427 None:intergenic
CTTAGACCAGGTATCAAAAG+AGG 0.529980 3.4:-31043486 MS.gene03577:CDS
TTCCTAAAAGTGCTTGAAGG+TGG 0.549309 3.4:+31043430 None:intergenic
ATATCCTCCTCTGGAGTCCA+AGG 0.551517 3.4:+31043966 None:intergenic
TACATTCAAGAACATGGACC+TGG 0.568304 3.4:-31043930 MS.gene03577:CDS
GTATCATACATTCAAGAACA+TGG 0.579079 3.4:-31043936 MS.gene03577:CDS
TTGGGGTTAAGAAAGGACCT+TGG 0.585675 3.4:-31043983 MS.gene03577:CDS
TGGACTAATTATCTTAGACC+AGG 0.626542 3.4:-31043498 MS.gene03577:CDS
GAAAGGACCTTGGACTCCAG+AGG 0.661042 3.4:-31043973 MS.gene03577:CDS
AGGACCTTGGACTCCAGAGG+AGG 0.681544 3.4:-31043970 MS.gene03577:CDS
ACCTTGCTGTGAGAAAATTG+GGG 0.707642 3.4:-31044000 MS.gene03577:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTGATTTTTCTTTTTC+AGG - chr3.4:31043882-31043901 MS.gene03577:intron 15.0%
!!! GTTTATGTTTTTGATTTTGT+AGG - chr3.4:31043856-31043875 MS.gene03577:intron 20.0%
! ACAAGTACAACATTTGTATA+TGG + chr3.4:31043812-31043831 None:intergenic 25.0%
ATACAAATGTTGTACTTGTG+TGG - chr3.4:31043813-31043832 MS.gene03577:intron 30.0%
GCTAAATTGTTATCGATCTA+TGG - chr3.4:31043786-31043805 MS.gene03577:intron 30.0%
GTATCATACATTCAAGAACA+TGG - chr3.4:31043501-31043520 MS.gene03577:CDS 30.0%
! AAATTACCTCTTTTGATACC+TGG + chr3.4:31043960-31043979 None:intergenic 30.0%
! TTAGCCTATATTTGAAACCA+CGG + chr3.4:31043771-31043790 None:intergenic 30.0%
!! TATTTCCTAAAAGTGCTTGA+AGG + chr3.4:31044013-31044032 None:intergenic 30.0%
!!! TGAATTGTTTTAACCTGTAG+TGG + chr3.4:31043553-31043572 None:intergenic 30.0%
ACCAAAATTATATCCTCCTC+TGG + chr3.4:31043483-31043502 None:intergenic 35.0%
GAGAAAATTGGGGTTAAGAA+AGG - chr3.4:31043447-31043466 MS.gene03577:CDS 35.0%
GTAAAAGTTGCAGACTTAGA+TGG - chr3.4:31043919-31043938 MS.gene03577:CDS 35.0%
TCTACCGTGGTTTCAAATAT+AGG - chr3.4:31043764-31043783 MS.gene03577:intron 35.0%
TGGACTAATTATCTTAGACC+AGG - chr3.4:31043939-31043958 MS.gene03577:CDS 35.0%
! TCCAGAGGAGGATATAATTT+TGG - chr3.4:31043479-31043498 MS.gene03577:CDS 35.0%
!! TCAAAGCTGAAGCTATTTCT+TGG + chr3.4:31043652-31043671 None:intergenic 35.0%
!!! ATTGTTTTAACCTGTAGTGG+TGG + chr3.4:31043550-31043569 None:intergenic 35.0%
!!! TTGTTTTAACCTGTAGTGGT+GGG + chr3.4:31043549-31043568 None:intergenic 35.0%
AAGAACATGGACCTGGAAAT+TGG - chr3.4:31043514-31043533 MS.gene03577:CDS 40.0%
CTTAGACCAGGTATCAAAAG+AGG - chr3.4:31043951-31043970 MS.gene03577:CDS 40.0%
TACATTCAAGAACATGGACC+TGG - chr3.4:31043507-31043526 MS.gene03577:CDS 40.0%
TTATAGCTTCTACTCTACCG+TGG - chr3.4:31043751-31043770 MS.gene03577:intron 40.0%
! ACCTTGCTGTGAGAAAATTG+GGG - chr3.4:31043437-31043456 MS.gene03577:CDS 40.0%
! ATCCACCTTCAAGCACTTTT+AGG - chr3.4:31044005-31044024 MS.gene03577:CDS 40.0%
! CACCTTGCTGTGAGAAAATT+GGG - chr3.4:31043436-31043455 MS.gene03577:CDS 40.0%
!! TTCCTAAAAGTGCTTGAAGG+TGG + chr3.4:31044010-31044029 None:intergenic 40.0%
GGAACTGATCTCCAATTTCC+AGG + chr3.4:31043528-31043547 None:intergenic 45.0%
TTGGGGTTAAGAAAGGACCT+TGG - chr3.4:31043454-31043473 MS.gene03577:CDS 45.0%
! ACCCCAATTTTCTCACAGCA+AGG + chr3.4:31043441-31043460 None:intergenic 45.0%
! CCAATTTTCTCACAGCAAGG+TGG + chr3.4:31043438-31043457 None:intergenic 45.0%
! CCACCTTGCTGTGAGAAAAT+TGG - chr3.4:31043435-31043454 MS.gene03577:CDS 45.0%
AGATCAGTTCCCACCACTAC+AGG - chr3.4:31043537-31043556 MS.gene03577:intron 50.0%
!! ATATCCTCCTCTGGAGTCCA+AGG + chr3.4:31043474-31043493 None:intergenic 50.0%
GAAAGGACCTTGGACTCCAG+AGG - chr3.4:31043464-31043483 MS.gene03577:CDS 55.0%
AGGACCTTGGACTCCAGAGG+AGG - chr3.4:31043467-31043486 MS.gene03577:CDS 60.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 31043426 31044033 31043426 ID=MS.gene03577
chr3.4 mRNA 31043426 31044033 31043426 ID=MS.gene03577.t1;Parent=MS.gene03577
chr3.4 exon 31043901 31044033 31043901 ID=MS.gene03577.t1.exon1;Parent=MS.gene03577.t1
chr3.4 CDS 31043901 31044033 31043901 ID=cds.MS.gene03577.t1;Parent=MS.gene03577.t1
chr3.4 exon 31043426 31043555 31043426 ID=MS.gene03577.t1.exon2;Parent=MS.gene03577.t1
chr3.4 CDS 31043426 31043555 31043426 ID=cds.MS.gene03577.t1;Parent=MS.gene03577.t1
Gene Sequence

>MS.gene03577

ATGGTGAGACCACCTTGCTGTGAGAAAATTGGGGTTAAGAAAGGACCTTGGACTCCAGAGGAGGATATAATTTTGGTATCATACATTCAAGAACATGGACCTGGAAATTGGAGATCAGTTCCCACCACTACAGGTTAAAACAATTCATTATCATATAGATATTTTGTTCATTTTTTCATATAAAAATATTTTATTCGTAAGAAATGTCTATGAAACTCTGAATCCAAGAAATAGCTTCAGCTTTGACTGAAGCTACTTCTTCGATTTTCAAATATTTATATTAAGATTATAATATTAGACAACAATTTAAAACTATGACATATGCTTATAGCTTCTACTCTACCGTGGTTTCAAATATAGGCTAAATTGTTATCGATCTATGGCCATATACAAATGTTGTACTTGTGTGGTTCTTATTTTTCTGTATTTAGTTTATGTTTTTGATTTTGTAGGCTATTTATTGATTTTTCTTTTTCAGGTTTGATGAGATGCAGTAAAAGTTGCAGACTTAGATGGACTAATTATCTTAGACCAGGTATCAAAAGAGGTAATTTCAATGATCATGAAGAAAAAATGATAATCCACCTTCAAGCACTTTTAGGAAATAG
Protein sequence

>MS.gene03577.t1

MVRPPCCEKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTTTGLMRCSKSCRLRWTNYLRPGIKRGNFNDHEEKMIIHLQALLGN