Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035833.t1 | RHN67153.1 | 86 | 893 | 118 | 5 | 1 | 892 | 1 | 887 | 0.00E+00 | 1334.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035833.t1 | Q9LTS7 | 23.9 | 284 | 176 | 6 | 498 | 752 | 336 | 608 | 2.7e-09 | 65.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035833.t1 | A0A396IRN9 | 86.0 | 893 | 118 | 5 | 1 | 892 | 1 | 887 | 0.0e+00 | 1334.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene035833.t1 | TF | C3H |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035833.t1 | MTR_5g096500 | 89.126 | 892 | 83 | 5 | 1 | 892 | 1 | 878 | 0.0 | 1524 |
| MS.gene035833.t1 | MTR_5g096500 | 89.013 | 892 | 83 | 6 | 1 | 892 | 1 | 877 | 0.0 | 1518 |
| MS.gene035833.t1 | MTR_3g053340 | 79.195 | 894 | 113 | 8 | 1 | 892 | 1 | 823 | 0.0 | 1357 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035833.t1 | AT5G56930 | 35.798 | 257 | 129 | 8 | 498 | 727 | 336 | 583 | 8.99e-37 | 148 |
Find 204 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTCCATCTAATCTCTTTA+TGG | 0.121630 | 3.4:+50140729 | MS.gene035833:CDS |
| TTAGAAGAGGGAGAAATTTC+TGG | 0.169773 | 3.4:+50140559 | MS.gene035833:CDS |
| ATTACTGGATTCTACAATTA+TGG | 0.231119 | 3.4:+50140438 | MS.gene035833:CDS |
| AATACCATGGACTTTGTTAA+AGG | 0.249136 | 3.4:-50143417 | None:intergenic |
| TTGCCTCAGTCAGTCAATTT+TGG | 0.252130 | 3.4:+50144813 | MS.gene035833:CDS |
| TATTCTGTTTCTCGCAGTTC+AGG | 0.265437 | 3.4:-50140021 | None:intergenic |
| TTCAGTTTCACTGCTGAATA+AGG | 0.267921 | 3.4:+50144848 | MS.gene035833:CDS |
| AGTTTCAGAACATATGAAAT+TGG | 0.281390 | 3.4:+50140633 | MS.gene035833:CDS |
| GGAGCCTTTAGACACAAAAT+TGG | 0.289293 | 3.4:-50143994 | None:intergenic |
| TCTTCAGAAGGTCTGGTATC+TGG | 0.304297 | 3.4:+50145131 | MS.gene035833:CDS |
| ATTTATAAATCTAATTCCTT+TGG | 0.310961 | 3.4:-50144562 | None:intergenic |
| AGAATAAATTCTCTTAGAAT+TGG | 0.311344 | 3.4:-50144481 | None:intergenic |
| TGTATTTCCTTCAAGGGTAT+TGG | 0.313994 | 3.4:-50139785 | None:intergenic |
| GACAGAAGATGGTGGATTAC+TGG | 0.316523 | 3.4:+50140423 | MS.gene035833:CDS |
| AAACCATCTGTTTGTGTAGA+TGG | 0.328437 | 3.4:-50139914 | None:intergenic |
| CGGTAGTGAAGTTGATTTGA+TGG | 0.337687 | 3.4:+50140045 | MS.gene035833:CDS |
| CGATAAGGAGGGAAAGGTAT+AGG | 0.338730 | 3.4:-50138304 | None:intergenic |
| ACAGAGATCTAGGTGTTAAA+AGG | 0.338944 | 3.4:+50142215 | MS.gene035833:CDS |
| TGATGCAGCAGAATTTCTTA+TGG | 0.341614 | 3.4:+50139880 | MS.gene035833:CDS |
| TTTACCATAAAGAGATTAGA+TGG | 0.345594 | 3.4:-50140733 | None:intergenic |
| GAGAAAGGTGGGAGAGAATA+CGG | 0.347188 | 3.4:-50138366 | None:intergenic |
| TGGACAAGATTTCCCTTGTT+TGG | 0.347517 | 3.4:-50144630 | None:intergenic |
| TTTATAAATCTAATTCCTTT+GGG | 0.352802 | 3.4:-50144561 | None:intergenic |
| GGTTGTACCGTGTCTTGTTT+TGG | 0.353400 | 3.4:-50144609 | None:intergenic |
| CTTCAAGGGTATTGGACCCT+TGG | 0.362987 | 3.4:-50139777 | None:intergenic |
| TCATTTGGAACAGATGATAA+TGG | 0.364717 | 3.4:+50139937 | MS.gene035833:CDS |
| ATCGGTTCAAGAGGTAAATA+AGG | 0.366054 | 3.4:+50145037 | MS.gene035833:CDS |
| TGTTCTGGAGGCTGAAACCT+GGG | 0.366097 | 3.4:-50142238 | None:intergenic |
| TTGAAGAGATCATGATCATA+TGG | 0.366562 | 3.4:-50143960 | None:intergenic |
| GTTGTAGAGGTGAACGTTGT+AGG | 0.367146 | 3.4:+50144018 | MS.gene035833:CDS |
| TTCAAGGGTATTGGACCCTT+GGG | 0.374920 | 3.4:-50139776 | None:intergenic |
| AAGGAGATACCCGTATTAAA+AGG | 0.376901 | 3.4:-50140700 | None:intergenic |
| GGAGTCAACTTTCTTTCTTT+CGG | 0.379336 | 3.4:+50144726 | MS.gene035833:CDS |
| ATTTCACCCTCTTGAATAGT+AGG | 0.380109 | 3.4:-50140313 | None:intergenic |
| TCTGGTTTGCAAGCATTTGT+AGG | 0.381821 | 3.4:-50144372 | None:intergenic |
| CTGCTGAATAAGGATGATAA+TGG | 0.386959 | 3.4:+50144858 | MS.gene035833:CDS |
| AGTTGAAGCCTGAAAATTAT+CGG | 0.396775 | 3.4:-50145063 | None:intergenic |
| ACCACTTTGTTCCTTTCTGT+TGG | 0.403290 | 3.4:-50141258 | None:intergenic |
| CAACAACCCCTCAATGTTCC+TGG | 0.403791 | 3.4:+50138406 | MS.gene035833:CDS |
| TTGTTCTGGAGGCTGAAACC+TGG | 0.404573 | 3.4:-50142239 | None:intergenic |
| CATGTTGAACATCTGCGTTC+TGG | 0.406173 | 3.4:+50140082 | MS.gene035833:CDS |
| GGAGAAGGGTGGTGTAAGTA+TGG | 0.407920 | 3.4:-50138345 | None:intergenic |
| GATAAGGAGGGAAAGGTATA+GGG | 0.408193 | 3.4:-50138303 | None:intergenic |
| AATACGGGTATCTCCTTTCA+AGG | 0.410281 | 3.4:+50140706 | MS.gene035833:CDS |
| AGTCTTGCACAAAGGATTCA+TGG | 0.412264 | 3.4:+50140792 | MS.gene035833:CDS |
| CTTGTCTCCAACACTTTCAA+TGG | 0.412681 | 3.4:-50139822 | None:intergenic |
| TCCTTCTTCAATCAGAATAT+CGG | 0.414405 | 3.4:-50140533 | None:intergenic |
| GACATCATGTATTTCCTTCA+AGG | 0.416233 | 3.4:-50139792 | None:intergenic |
| ACAACAAAAGGAAACAGAAT+TGG | 0.424477 | 3.4:+50140258 | MS.gene035833:CDS |
| ATTCTGTTTCTCGCAGTTCA+GGG | 0.426340 | 3.4:-50140020 | None:intergenic |
| ACTCCCTTGGGCATGACAGC+TGG | 0.427412 | 3.4:-50144708 | None:intergenic |
| CAAGCGTGGTCCTGGTTCTC+AGG | 0.427999 | 3.4:+50141930 | MS.gene035833:CDS |
| ACATCTGTCTTCAGAAGGTC+TGG | 0.430319 | 3.4:+50145124 | MS.gene035833:CDS |
| GCAGAAAAGAACAGAGATCT+AGG | 0.434369 | 3.4:+50142205 | MS.gene035833:CDS |
| GTCGTGACTCTTGTATGAAA+GGG | 0.434408 | 3.4:+50143928 | MS.gene035833:CDS |
| TTGAAGTCTCCTCTTTCGTC+AGG | 0.434521 | 3.4:+50144396 | MS.gene035833:CDS |
| AACGGGAGCAAGCGTGGTCC+TGG | 0.435539 | 3.4:+50141922 | MS.gene035833:CDS |
| TCCGATATTCTGATTGAAGA+AGG | 0.436958 | 3.4:+50140532 | MS.gene035833:CDS |
| TTTCAAGATAATGGCAATGT+TGG | 0.440769 | 3.4:+50139683 | MS.gene035833:intron |
| GAAAGAGGAGACTTCAACTC+TGG | 0.441262 | 3.4:-50144390 | None:intergenic |
| CGGGAGTTCATTTGAAAACA+TGG | 0.445788 | 3.4:+50140672 | MS.gene035833:CDS |
| GATGCAGCAGAATTTCTTAT+GGG | 0.447634 | 3.4:+50139881 | MS.gene035833:CDS |
| GGAAGAACAGAGTGGTCATA+AGG | 0.447947 | 3.4:+50140342 | MS.gene035833:CDS |
| CAAGGGTCCAATACCCTTGA+AGG | 0.451166 | 3.4:+50139778 | MS.gene035833:CDS |
| GAAGAAGGAGATTTAGAAGA+GGG | 0.451883 | 3.4:+50140547 | MS.gene035833:CDS |
| AAACAATGAAAGACAACAAA+AGG | 0.454560 | 3.4:+50140246 | MS.gene035833:CDS |
| AGTTGGAGCTTGTTGTGAAA+GGG | 0.455418 | 3.4:+50139963 | MS.gene035833:CDS |
| CGTCGTGACTCTTGTATGAA+AGG | 0.459493 | 3.4:+50143927 | MS.gene035833:CDS |
| TGTGAGAATAGCGCAGTTTG+TGG | 0.460073 | 3.4:-50144912 | None:intergenic |
| CGGGAGCTCGTCTGTAGTAC+AGG | 0.460442 | 3.4:+50140837 | MS.gene035833:CDS |
| GAAATTCTGCTGCATCATCT+AGG | 0.474076 | 3.4:-50139874 | None:intergenic |
| AGAAAGAAAGTTGACTCCCT+TGG | 0.474127 | 3.4:-50144721 | None:intergenic |
| AACTTTCTTTCTTTCGGCAA+AGG | 0.474569 | 3.4:+50144732 | MS.gene035833:CDS |
| AGCAGATGGTTGATGCCAAC+GGG | 0.476005 | 3.4:+50141905 | MS.gene035833:intron |
| TTTGTATTTCCTGACGAAAG+AGG | 0.479190 | 3.4:-50144405 | None:intergenic |
| ACAACGTTCACCTCTACAAC+AGG | 0.479727 | 3.4:-50144015 | None:intergenic |
| AGTGGAACATGTGCAGATAA+AGG | 0.481118 | 3.4:+50144654 | MS.gene035833:CDS |
| TCAGTCGTTCTGCCATGGAT+TGG | 0.481190 | 3.4:-50144953 | None:intergenic |
| TTGTAGGCGTAGGTATATCT+TGG | 0.482397 | 3.4:-50144356 | None:intergenic |
| GAAAGAAAGTTGACTCCCTT+GGG | 0.483104 | 3.4:-50144720 | None:intergenic |
| ATTCCTTTGGGTGCTGAGGT+AGG | 0.484739 | 3.4:-50144549 | None:intergenic |
| GTTTCACATCTGTCTTCAGA+AGG | 0.486768 | 3.4:+50145119 | MS.gene035833:CDS |
| ATTAAACTATCATCACAAAC+AGG | 0.487070 | 3.4:-50139995 | None:intergenic |
| AGGCGTAGGTATATCTTGGC+TGG | 0.488376 | 3.4:-50144352 | None:intergenic |
| AAGTCGAATTGAGTGCCCTT+TGG | 0.490972 | 3.4:-50145181 | None:intergenic |
| ATCTAGGTGTTAAAAGGCCC+AGG | 0.491420 | 3.4:+50142221 | MS.gene035833:CDS |
| CGGAGGGGAGATCGACGATA+AGG | 0.491529 | 3.4:-50138319 | None:intergenic |
| TCACACCAATGTAGAACATA+AGG | 0.494563 | 3.4:+50144503 | MS.gene035833:CDS |
| GGATCACAGCCATTGTAAAT+CGG | 0.496225 | 3.4:+50145019 | MS.gene035833:CDS |
| GCTCCCGTGATCTTTGATAG+AGG | 0.497874 | 3.4:-50140821 | None:intergenic |
| GAGTTGGAGCTTGTTGTGAA+AGG | 0.497925 | 3.4:+50139962 | MS.gene035833:CDS |
| GTGGGAGAGAATACGGAGAA+GGG | 0.499936 | 3.4:-50138359 | None:intergenic |
| GGAGCAAGAAAACCAGGAAA+AGG | 0.500866 | 3.4:+50139709 | MS.gene035833:CDS |
| TGATTTCAGTCGTTCTGCCA+TGG | 0.505856 | 3.4:-50144958 | None:intergenic |
| TTGAAACGGTGGAAGGAGAA+AGG | 0.510860 | 3.4:-50138381 | None:intergenic |
| CAGCAGATGGTTGATGCCAA+CGG | 0.513664 | 3.4:+50141904 | MS.gene035833:intron |
| GGTGTAAGTATGGCTGCGGA+GGG | 0.514973 | 3.4:-50138335 | None:intergenic |
| AACGGTGGAAGGAGAAAGGT+GGG | 0.515537 | 3.4:-50138377 | None:intergenic |
| GGTGGGAGAGAATACGGAGA+AGG | 0.518024 | 3.4:-50138360 | None:intergenic |
| AGGAGAAGAAAACTAGAAAG+AGG | 0.520032 | 3.4:+50141950 | MS.gene035833:CDS |
| AGCATCAAACGTAGGCCAAA+GGG | 0.521645 | 3.4:+50145166 | MS.gene035833:CDS |
| GAGAACTCTGAGTTAAAAGT+TGG | 0.525245 | 3.4:+50139737 | MS.gene035833:CDS |
| TGGTGTAAGTATGGCTGCGG+AGG | 0.525497 | 3.4:-50138336 | None:intergenic |
| CATTGAAAGTGTTGGAGACA+AGG | 0.530051 | 3.4:+50139823 | MS.gene035833:CDS |
| ACAGATGATAATGGACGAGT+TGG | 0.532127 | 3.4:+50139946 | MS.gene035833:CDS |
| GAGGTGCAGTCGCAAGTACA+AGG | 0.532562 | 3.4:+50140130 | MS.gene035833:CDS |
| TGAAGAGATCATGATCATAT+GGG | 0.534999 | 3.4:-50143959 | None:intergenic |
| AGTTTGTCCCTTTGTTGACT+CGG | 0.537842 | 3.4:-50140191 | None:intergenic |
| GAAGACAGATGTGAAACAAA+GGG | 0.540909 | 3.4:-50145113 | None:intergenic |
| TTCTGTTTCTCGCAGTTCAG+GGG | 0.542275 | 3.4:-50140019 | None:intergenic |
| TGCTGATGTCAAGGATCCCA+AGG | 0.542510 | 3.4:+50139760 | MS.gene035833:CDS |
| CACGAGACCATTGAAAGTGT+TGG | 0.543655 | 3.4:+50139815 | MS.gene035833:CDS |
| GAATGTTGGCATTATATGAA+AGG | 0.545359 | 3.4:+50142277 | MS.gene035833:CDS |
| TGAAGAAGGAGATTTAGAAG+AGG | 0.545846 | 3.4:+50140546 | MS.gene035833:CDS |
| AGGGGAGATCGACGATAAGG+AGG | 0.548920 | 3.4:-50138316 | None:intergenic |
| TGTTGAGTTGAAACGGTGGA+AGG | 0.549014 | 3.4:-50138388 | None:intergenic |
| AGATAATGGCAATGTTGGAA+TGG | 0.553834 | 3.4:+50139688 | MS.gene035833:intron |
| CAACACTTTCAATGGTCTCG+TGG | 0.554024 | 3.4:-50139814 | None:intergenic |
| GGATTTGAGTGCCAATGCTA+TGG | 0.554777 | 3.4:+50139850 | MS.gene035833:CDS |
| GAATGTACCAGGAACATTGA+GGG | 0.555122 | 3.4:-50138413 | None:intergenic |
| AGTACACCACTGAATAATCA+TGG | 0.555772 | 3.4:+50144432 | MS.gene035833:CDS |
| CCTCTTGAACCGATTTACAA+TGG | 0.556834 | 3.4:-50145028 | None:intergenic |
| GAGGGGTTGTTGAGTTGAAA+CGG | 0.557333 | 3.4:-50138395 | None:intergenic |
| AAAAGTTGGTGCTGATGTCA+AGG | 0.557812 | 3.4:+50139751 | MS.gene035833:CDS |
| TATTCCTTTAACAAAGTCCA+TGG | 0.562786 | 3.4:+50143413 | MS.gene035833:CDS |
| GGGGAGATCGACGATAAGGA+GGG | 0.563067 | 3.4:-50138315 | None:intergenic |
| CGACGGGCATGGTGAGCACA+TGG | 0.565898 | 3.4:-50143909 | None:intergenic |
| GGAGAGAATACGGAGAAGGG+TGG | 0.566031 | 3.4:-50138356 | None:intergenic |
| AACACTGGTTTGTCCTCTAG+CGG | 0.566094 | 3.4:+50140282 | MS.gene035833:CDS |
| TCTAATTCCTTTGGGTGCTG+AGG | 0.566303 | 3.4:-50144553 | None:intergenic |
| ACATCATGTATTTCCTTCAA+GGG | 0.566355 | 3.4:-50139791 | None:intergenic |
| GGAAACAGAATTGGTAACAC+TGG | 0.567719 | 3.4:+50140267 | MS.gene035833:CDS |
| GATGCCAACGGGAGCAAGCG+TGG | 0.568508 | 3.4:+50141916 | MS.gene035833:CDS |
| CAATATCATTCCTTCTGCAG+TGG | 0.568846 | 3.4:-50144787 | None:intergenic |
| AAGCATCAAACGTAGGCCAA+AGG | 0.569936 | 3.4:+50145165 | MS.gene035833:CDS |
| AAACGGTGGAAGGAGAAAGG+TGG | 0.570037 | 3.4:-50138378 | None:intergenic |
| TTGCAAGCATTTGTAGGCGT+AGG | 0.572990 | 3.4:-50144366 | None:intergenic |
| ACTAGCAAGAAGCGTAGCTG+AGG | 0.573123 | 3.4:-50145090 | None:intergenic |
| TCTATTCACTCCACTGCAGA+AGG | 0.576435 | 3.4:+50144777 | MS.gene035833:CDS |
| CCACTGAATAATCATGGCAC+TGG | 0.577523 | 3.4:+50144438 | MS.gene035833:CDS |
| ATCTCTTCCTACTATTCAAG+AGG | 0.577525 | 3.4:+50140306 | MS.gene035833:CDS |
| CATGTGTCCGAGTCAACAAA+GGG | 0.577612 | 3.4:+50140184 | MS.gene035833:CDS |
| ATCATCTAGGACCATAGCAT+TGG | 0.578913 | 3.4:-50139861 | None:intergenic |
| GAAACCTCTATCAAAGATCA+CGG | 0.581860 | 3.4:+50140817 | MS.gene035833:CDS |
| GAGTGTTGATGCCAACAGAA+AGG | 0.583436 | 3.4:+50141247 | MS.gene035833:CDS |
| CTTAATCAACTTGACTCGGA+AGG | 0.583971 | 3.4:+50140157 | MS.gene035833:CDS |
| AGAATGTACCAGGAACATTG+AGG | 0.584465 | 3.4:-50138414 | None:intergenic |
| TGAAGACAGATGTGAAACAA+AGG | 0.585226 | 3.4:-50145114 | None:intergenic |
| TGGAATGGAGCAAGAAAACC+AGG | 0.585974 | 3.4:+50139703 | MS.gene035833:CDS |
| AGACACGGTACAACCAAACA+AGG | 0.587232 | 3.4:+50144617 | MS.gene035833:CDS |
| TATTCCAGCTGTCATGCCCA+AGG | 0.588364 | 3.4:+50144704 | MS.gene035833:CDS |
| GATCGACGATAAGGAGGGAA+AGG | 0.589381 | 3.4:-50138310 | None:intergenic |
| TCTGTTTCTCGCAGTTCAGG+GGG | 0.593070 | 3.4:-50140018 | None:intergenic |
| TGTCACCTTATGTTCTACAT+TGG | 0.595277 | 3.4:-50144508 | None:intergenic |
| GGAGAAGAAAACTAGAAAGA+GGG | 0.596213 | 3.4:+50141951 | MS.gene035833:CDS |
| ACACTGGTTTGTCCTCTAGC+GGG | 0.597450 | 3.4:+50140283 | MS.gene035833:CDS |
| GCATTGAATATGACAGAAGA+TGG | 0.598965 | 3.4:+50140412 | MS.gene035833:CDS |
| GGGTGGTGTAAGTATGGCTG+CGG | 0.599371 | 3.4:-50138339 | None:intergenic |
| ATTAGATGGAAAGCCTTGAA+AGG | 0.601531 | 3.4:-50140719 | None:intergenic |
| CCATTGTAAATCGGTTCAAG+AGG | 0.603158 | 3.4:+50145028 | MS.gene035833:CDS |
| TTGGATGAGATTGAGAAACC+CGG | 0.603712 | 3.4:+50140652 | MS.gene035833:CDS |
| AGGACCACGCTTGCTCCCGT+TGG | 0.604273 | 3.4:-50141920 | None:intergenic |
| TACAAGAGTCACGACGGGCA+TGG | 0.604335 | 3.4:-50143920 | None:intergenic |
| TCAAGAGGGTGAAATTGAGA+AGG | 0.606957 | 3.4:+50140321 | MS.gene035833:CDS |
| ATTGAAAGTGTTGGAGACAA+GGG | 0.607556 | 3.4:+50139824 | MS.gene035833:CDS |
| TCATGTGTCCGAGTCAACAA+AGG | 0.608096 | 3.4:+50140183 | MS.gene035833:CDS |
| AGAGCTTAATCAACTTGACT+CGG | 0.611851 | 3.4:+50140153 | MS.gene035833:CDS |
| TGGATGAGATTGAGAAACCC+GGG | 0.616226 | 3.4:+50140653 | MS.gene035833:CDS |
| CACGTCTGAAAGTGTAAGTG+AGG | 0.619677 | 3.4:+50140111 | MS.gene035833:CDS |
| TTCAGCTGATGATTCTGTGA+GGG | 0.619873 | 3.4:+50144998 | MS.gene035833:CDS |
| TCGTGACTCTTGTATGAAAG+GGG | 0.621109 | 3.4:+50143929 | MS.gene035833:CDS |
| TCTAAAGGCTCCTGTTGTAG+AGG | 0.622148 | 3.4:+50144005 | MS.gene035833:CDS |
| AAACCTCTATCAAAGATCAC+GGG | 0.623432 | 3.4:+50140818 | MS.gene035833:CDS |
| GTTGGAGCTTGTTGTGAAAG+GGG | 0.628380 | 3.4:+50139964 | MS.gene035833:CDS |
| GTAGGAAGAGATCCCGCTAG+AGG | 0.633801 | 3.4:-50140295 | None:intergenic |
| GAACCATCTACACAAACAGA+TGG | 0.637190 | 3.4:+50139911 | MS.gene035833:CDS |
| ACTTGATGTACTACTAATCA+CGG | 0.640241 | 3.4:-50140221 | None:intergenic |
| ATTCCAGCTGTCATGCCCAA+GGG | 0.640386 | 3.4:+50144705 | MS.gene035833:CDS |
| AAACCAAAATTGACTGACTG+AGG | 0.641965 | 3.4:-50144816 | None:intergenic |
| TTGAATATGACAGAAGATGG+TGG | 0.642220 | 3.4:+50140415 | MS.gene035833:CDS |
| CACATTTGATGTGTCTTCTG+CGG | 0.643979 | 3.4:+50140603 | MS.gene035833:CDS |
| AAGTGTTGGAGACAAGGGCA+AGG | 0.644118 | 3.4:+50139829 | MS.gene035833:CDS |
| TTTCATACAAGAGTCACGAC+GGG | 0.644579 | 3.4:-50143925 | None:intergenic |
| AATGTACCAGGAACATTGAG+GGG | 0.656974 | 3.4:-50138412 | None:intergenic |
| GATGTTCAACATGTTCTACT+CGG | 0.659808 | 3.4:-50140072 | None:intergenic |
| AAGCCTACCTCAGCACCCAA+AGG | 0.664036 | 3.4:+50144546 | MS.gene035833:CDS |
| CTTTCATACAAGAGTCACGA+CGG | 0.670545 | 3.4:-50143926 | None:intergenic |
| TTAGACACAAAATTGGAACA+AGG | 0.673175 | 3.4:-50143987 | None:intergenic |
| GTGTAAGTATGGCTGCGGAG+GGG | 0.676588 | 3.4:-50138334 | None:intergenic |
| GCTGATGTCAAGGATCCCAA+GGG | 0.678207 | 3.4:+50139761 | MS.gene035833:CDS |
| CCAGTGCCATGATTATTCAG+TGG | 0.679404 | 3.4:-50144438 | None:intergenic |
| GGGTTGTTGAGTTGAAACGG+TGG | 0.681204 | 3.4:-50138392 | None:intergenic |
| TCTCTTCCTACTATTCAAGA+GGG | 0.684623 | 3.4:+50140307 | MS.gene035833:CDS |
| GCCAACAGAAAGGAACAAAG+TGG | 0.696766 | 3.4:+50141257 | MS.gene035833:CDS |
| TAGTACACCAAAACAAGACA+CGG | 0.696951 | 3.4:+50144602 | MS.gene035833:CDS |
| ATTCAGCTGATGATTCTGTG+AGG | 0.697116 | 3.4:+50144997 | MS.gene035833:CDS |
| GACACGGTACAACCAAACAA+GGG | 0.697668 | 3.4:+50144618 | MS.gene035833:CDS |
| CATAAACAAGCATCAAACGT+AGG | 0.703000 | 3.4:+50145158 | MS.gene035833:CDS |
| AGATAAAGGTCAAAATACTG+CGG | 0.725271 | 3.4:+50144668 | MS.gene035833:CDS |
| ATTGAGAAGGAAGAACAGAG+TGG | 0.726299 | 3.4:+50140334 | MS.gene035833:CDS |
| AACTGCGAGAAACAGAATAG+CGG | 0.734818 | 3.4:+50140025 | MS.gene035833:CDS |
| TATCTGCACATGTTCCACTG+TGG | 0.736675 | 3.4:-50144650 | None:intergenic |
| AAGGGAAATCTTGTCCACAG+TGG | 0.738177 | 3.4:+50144636 | MS.gene035833:CDS |
| TATGAAAGGAAAATGCCATG+AGG | 0.742938 | 3.4:+50142291 | MS.gene035833:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 50138277 | 50145247 | 50138277 | ID=MS.gene035833 |
| chr3.4 | mRNA | 50138277 | 50145247 | 50138277 | ID=MS.gene035833.t1;Parent=MS.gene035833 |
| chr3.4 | exon | 50138277 | 50138427 | 50138277 | ID=MS.gene035833.t1.exon1;Parent=MS.gene035833.t1 |
| chr3.4 | CDS | 50138277 | 50138427 | 50138277 | ID=cds.MS.gene035833.t1;Parent=MS.gene035833.t1 |
| chr3.4 | exon | 50139690 | 50140858 | 50139690 | ID=MS.gene035833.t1.exon2;Parent=MS.gene035833.t1 |
| chr3.4 | CDS | 50139690 | 50140858 | 50139690 | ID=cds.MS.gene035833.t1;Parent=MS.gene035833.t1 |
| chr3.4 | exon | 50141245 | 50141310 | 50141245 | ID=MS.gene035833.t1.exon3;Parent=MS.gene035833.t1 |
| chr3.4 | CDS | 50141245 | 50141310 | 50141245 | ID=cds.MS.gene035833.t1;Parent=MS.gene035833.t1 |
| chr3.4 | exon | 50141907 | 50141972 | 50141907 | ID=MS.gene035833.t1.exon4;Parent=MS.gene035833.t1 |
| chr3.4 | CDS | 50141907 | 50141972 | 50141907 | ID=cds.MS.gene035833.t1;Parent=MS.gene035833.t1 |
| chr3.4 | exon | 50142184 | 50142312 | 50142184 | ID=MS.gene035833.t1.exon5;Parent=MS.gene035833.t1 |
| chr3.4 | CDS | 50142184 | 50142312 | 50142184 | ID=cds.MS.gene035833.t1;Parent=MS.gene035833.t1 |
| chr3.4 | exon | 50143384 | 50143434 | 50143384 | ID=MS.gene035833.t1.exon6;Parent=MS.gene035833.t1 |
| chr3.4 | CDS | 50143384 | 50143434 | 50143384 | ID=cds.MS.gene035833.t1;Parent=MS.gene035833.t1 |
| chr3.4 | exon | 50143909 | 50144052 | 50143909 | ID=MS.gene035833.t1.exon7;Parent=MS.gene035833.t1 |
| chr3.4 | CDS | 50143909 | 50144052 | 50143909 | ID=cds.MS.gene035833.t1;Parent=MS.gene035833.t1 |
| chr3.4 | exon | 50144345 | 50145247 | 50144345 | ID=MS.gene035833.t1.exon8;Parent=MS.gene035833.t1 |
| chr3.4 | CDS | 50144345 | 50145247 | 50144345 | ID=cds.MS.gene035833.t1;Parent=MS.gene035833.t1 |
| Gene Sequence |
| Protein sequence |
