AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene035834

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene035834.t1 MTR_3g053330 92.437 476 28 2 1 476 1 468 0.0 879
MS.gene035834.t1 MTR_2g023930 43.243 481 204 11 32 453 60 530 6.36e-97 303
MS.gene035834.t1 MTR_2g088000 41.129 496 198 17 34 454 81 557 6.61e-92 291
MS.gene035834.t1 MTR_4g132430 39.254 456 203 10 34 441 30 459 2.12e-87 276
MS.gene035834.t1 MTR_4g132430 49.823 283 118 5 183 441 43 325 4.79e-78 248
MS.gene035834.t1 MTR_7g110720 36.695 466 213 12 22 467 13 416 5.23e-71 232
MS.gene035834.t1 MTR_4g049760 37.237 427 218 11 87 468 100 521 1.13e-69 231
MS.gene035834.t1 MTR_7g110720 54.825 228 91 5 242 467 172 389 4.17e-68 223
MS.gene035834.t1 MTR_4g049790 38.424 406 197 13 93 461 131 520 2.07e-66 223
MS.gene035834.t1 MTR_4g047580 33.888 481 238 15 39 455 30 494 2.96e-63 214
MS.gene035834.t1 MTR_2g045360 46.352 233 112 6 233 456 185 413 1.51e-56 194
MS.gene035834.t1 MTR_7g009730 30.926 443 205 11 107 457 54 487 4.93e-46 169
MS.gene035834.t1 MTR_4g094412 41.762 261 112 8 243 466 227 484 2.40e-42 157
MS.gene035834.t1 MTR_4g094412 41.762 261 112 8 243 466 218 475 2.61e-42 157
MS.gene035834.t1 MTR_4g107970 69.767 86 26 0 234 319 153 238 5.54e-39 148
MS.gene035834.t1 MTR_4g107970 56.790 162 53 3 234 380 230 389 1.41e-38 148
MS.gene035834.t1 MTR_5g044695 72.308 65 18 0 223 287 41 105 3.99e-29 110
MS.gene035834.t1 MTR_4g007060 31.776 214 104 5 242 455 111 282 2.41e-28 114
MS.gene035834.t1 MTR_6g038890 39.521 167 88 4 131 286 51 215 2.89e-28 112
MS.gene035834.t1 MTR_4g007060 31.776 214 104 5 242 455 145 316 3.34e-28 114
MS.gene035834.t1 MTR_3g106060 29.730 259 119 6 59 317 1 196 9.79e-26 107
MS.gene035834.t1 MTR_1g013790 47.368 95 48 1 243 335 83 177 1.81e-25 105
MS.gene035834.t1 MTR_5g094430 52.564 78 36 1 242 319 235 311 8.92e-24 103
MS.gene035834.t1 MTR_5g074400 47.191 89 46 1 231 319 392 479 9.36e-24 104
MS.gene035834.t1 MTR_5g074400 50.000 60 28 2 260 319 244 301 9.41e-12 67.8
MS.gene035834.t1 MTR_5g094430 52.564 78 36 1 242 319 213 289 9.45e-24 103
MS.gene035834.t1 MTR_1g013760 33.014 209 82 6 244 452 125 275 1.70e-23 100
MS.gene035834.t1 MTR_3g056100 52.564 78 36 1 242 319 254 330 1.99e-23 102
MS.gene035834.t1 MTR_5g094430 52.564 78 36 1 242 319 347 423 2.01e-23 103
MS.gene035834.t1 MTR_3g056100 52.564 78 36 1 242 319 241 317 2.07e-23 102
MS.gene035834.t1 MTR_3g056100 52.564 78 36 1 242 319 398 474 2.18e-23 103
MS.gene035834.t1 MTR_3g056100 52.564 78 36 1 242 319 385 461 2.32e-23 103
MS.gene035834.t1 MTR_5g097490 45.361 97 51 2 233 329 226 320 3.15e-23 101
MS.gene035834.t1 MTR_4g013260 52.564 78 36 1 242 319 319 395 4.64e-23 102
MS.gene035834.t1 MTR_4g013260 35.955 89 56 1 240 328 165 252 7.27e-13 70.9
MS.gene035834.t1 MTR_7g011820 45.918 98 49 2 238 335 389 482 6.65e-23 102
MS.gene035834.t1 MTR_7g011820 53.333 60 26 2 260 319 229 286 5.52e-13 71.2
MS.gene035834.t1 MTR_3g031220 44.944 89 48 1 231 319 337 424 9.09e-23 101
MS.gene035834.t1 MTR_3g031220 48.333 60 29 2 260 319 199 256 1.26e-11 67.0
MS.gene035834.t1 MTR_3g009470 52.564 78 36 1 242 319 478 554 1.67e-22 101
MS.gene035834.t1 MTR_3g009470 42.683 82 44 3 260 340 281 360 1.15e-13 73.9
MS.gene035834.t1 MTR_7g071120 44.554 101 50 2 224 319 284 383 2.83e-22 99.8
MS.gene035834.t1 MTR_4g094588 43.956 91 50 1 246 336 165 254 3.20e-22 97.8
MS.gene035834.t1 MTR_5g042920 46.988 83 43 1 237 319 298 379 4.89e-22 98.6
MS.gene035834.t1 MTR_5g042920 47.222 72 36 2 260 331 152 221 4.12e-13 71.6
MS.gene035834.t1 MTR_2g033820 48.148 81 41 1 243 323 187 266 5.72e-22 97.8
MS.gene035834.t1 MTR_4g082580 47.561 82 42 1 238 319 257 337 1.43e-21 96.7
MS.gene035834.t1 MTR_4g082580 42.500 80 43 2 260 339 146 222 4.49e-11 65.1
MS.gene035834.t1 MTR_2g105060 46.591 88 43 1 236 319 67 154 1.46e-21 94.0
MS.gene035834.t1 MTR_2g105060 46.591 88 43 1 236 319 142 229 1.92e-21 95.1
MS.gene035834.t1 MTR_3g104750 43.182 88 49 1 229 316 74 160 2.44e-21 91.3
MS.gene035834.t1 MTR_5g091390 49.383 81 40 1 246 326 144 223 3.23e-21 94.4
MS.gene035834.t1 MTR_7g109800 42.857 98 51 2 243 340 129 221 4.29e-21 94.0
MS.gene035834.t1 MTR_7g079010 50.575 87 39 2 243 329 125 207 5.15e-21 91.7
MS.gene035834.t1 MTR_7g080020 48.718 78 39 1 242 319 476 552 7.03e-21 96.7
MS.gene035834.t1 MTR_7g080020 46.875 64 32 2 260 323 281 342 9.91e-12 67.8
MS.gene035834.t1 MTR_7g080000 48.718 78 39 1 242 319 415 491 1.10e-20 95.9
MS.gene035834.t1 MTR_7g080000 47.692 65 32 2 255 319 230 292 5.58e-12 68.6
MS.gene035834.t1 MTR_4g122530 46.341 82 43 1 243 324 192 272 1.82e-20 94.0
MS.gene035834.t1 MTR_1g086790 40.385 104 60 2 243 345 142 244 2.06e-20 92.4
MS.gene035834.t1 MTR_5g043880 46.914 81 42 1 236 316 101 180 2.72e-20 91.3
MS.gene035834.t1 MTR_7g028415 50.667 75 36 1 248 322 82 155 3.38e-20 88.2
MS.gene035834.t1 MTR_7g028710 50.667 75 36 1 248 322 82 155 3.38e-20 88.2
MS.gene035834.t1 MTR_1g015140 49.315 73 36 1 244 316 87 158 7.41e-20 87.0
MS.gene035834.t1 MTR_8g096730 42.857 84 47 1 242 325 53 135 8.39e-20 86.3
MS.gene035834.t1 MTR_7g100510 46.988 83 43 1 237 319 339 420 1.10e-19 91.7
MS.gene035834.t1 MTR_7g100510 44.000 75 40 2 260 334 190 262 1.21e-12 70.1
MS.gene035834.t1 MTR_1g070455 51.389 72 35 0 255 326 289 360 5.37e-19 88.6
MS.gene035834.t1 MTR_3g095040 50.000 74 36 1 246 319 105 177 6.11e-19 85.5
MS.gene035834.t1 MTR_8g087000 46.739 92 42 2 250 340 66 151 6.98e-19 86.3
MS.gene035834.t1 MTR_8g087000 46.739 92 42 2 250 340 67 152 7.61e-19 86.3
MS.gene035834.t1 MTR_2g016770 58.065 62 26 0 259 320 35 96 7.63e-19 85.5
MS.gene035834.t1 MTR_7g109600 40.541 111 57 2 241 345 29 136 8.36e-19 86.7
MS.gene035834.t1 MTR_2g016770 58.065 62 26 0 259 320 27 88 8.96e-19 85.1
MS.gene035834.t1 MTR_2g032030 40.000 110 65 1 226 334 233 342 1.05e-18 89.0
MS.gene035834.t1 MTR_2g024350 41.975 81 47 0 254 334 3 83 1.11e-18 85.5
MS.gene035834.t1 MTR_4g094908 50.000 74 37 0 245 318 252 325 1.43e-18 87.0
MS.gene035834.t1 MTR_2g032030 40.000 110 65 1 226 334 233 342 1.80e-18 87.8
MS.gene035834.t1 MTR_8g092010 44.156 77 42 1 246 322 95 170 1.81e-18 83.6
MS.gene035834.t1 MTR_5g016610 50.000 74 37 0 245 318 185 258 1.89e-18 85.5
MS.gene035834.t1 MTR_8g007270 46.053 76 40 1 242 317 137 211 2.02e-18 84.7
MS.gene035834.t1 MTR_2g083870 51.429 70 34 0 250 319 71 140 2.48e-18 85.1
MS.gene035834.t1 MTR_4g130900 48.052 77 39 1 243 319 343 418 3.63e-18 87.4
MS.gene035834.t1 MTR_3g095080 44.737 76 41 1 242 317 151 225 5.43e-18 83.6
MS.gene035834.t1 MTR_3g095080 44.737 76 41 1 242 317 127 201 5.52e-18 83.2
MS.gene035834.t1 MTR_1g009613 43.421 76 43 0 243 318 246 321 6.78e-18 85.1
MS.gene035834.t1 MTR_2g024380 43.210 81 46 0 254 334 246 326 1.10e-17 85.9
MS.gene035834.t1 MTR_4g127040 47.500 80 41 1 239 317 224 303 1.16e-17 84.3
MS.gene035834.t1 MTR_1g099600 41.489 94 53 1 256 349 182 273 6.76e-17 81.6
MS.gene035834.t1 MTR_0117s0040 40.860 93 49 1 246 338 61 147 7.82e-17 80.5
MS.gene035834.t1 MTR_8g092140 44.156 77 41 2 242 317 142 217 1.95e-16 79.0
MS.gene035834.t1 MTR_1g077780 39.130 92 54 2 243 334 46 135 2.13e-16 76.6
MS.gene035834.t1 MTR_3g108960 44.595 74 41 0 243 316 298 371 3.79e-16 80.5
MS.gene035834.t1 MTR_8g028565 45.946 74 40 0 256 329 152 225 4.39e-16 79.7
MS.gene035834.t1 MTR_6g086555 46.512 86 43 3 240 323 186 270 1.48e-15 79.0
MS.gene035834.t1 MTR_7g079040 39.362 94 50 1 256 349 151 237 2.24e-15 77.4
MS.gene035834.t1 MTR_8g098945 43.056 72 41 0 258 329 128 199 7.11e-15 75.1
MS.gene035834.t1 MTR_7g062220 54.098 61 27 1 260 320 125 184 1.50e-14 74.7
MS.gene035834.t1 MTR_3g009470 42.683 82 44 3 260 340 281 360 5.60e-14 74.3
MS.gene035834.t1 MTR_4g007060 39.683 63 38 0 234 296 137 199 1.94e-13 70.5
MS.gene035834.t1 MTR_1g078260 42.466 73 40 2 246 317 234 305 3.50e-13 72.0
MS.gene035834.t1 MTR_8g069935 33.708 89 47 1 243 319 303 391 1.75e-12 69.7
MS.gene035834.t1 MTR_3g031220 48.333 60 29 2 260 319 199 256 7.01e-12 67.4
MS.gene035834.t1 MTR_8g027860 46.575 73 32 2 258 323 135 207 9.01e-12 66.6
MS.gene035834.t1 MTR_5g067680 37.755 98 49 2 260 345 203 300 1.02e-11 66.6
MS.gene035834.t1 MTR_7g073430 43.210 81 44 1 260 338 123 203 1.15e-11 65.9
MS.gene035834.t1 MTR_8g067650 28.571 154 97 4 171 319 254 399 1.16e-11 67.4
MS.gene035834.t1 MTR_7g073380 36.364 99 60 2 243 338 106 204 2.90e-11 64.7
MS.gene035834.t1 MTR_8g067635 40.000 75 44 1 246 319 335 409 3.38e-11 65.9
MS.gene035834.t1 MTR_8g099350 35.593 118 58 5 221 320 83 200 3.78e-11 65.1
MS.gene035834.t1 MTR_5g097500 34.783 92 57 3 249 339 220 309 5.37e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene035834.t1 AT4G04450 40.000 495 207 18 33 452 24 503 3.78e-92 290
MS.gene035834.t1 AT4G04450 44.140 401 186 9 87 452 12 409 9.52e-91 283
MS.gene035834.t1 AT1G62300 40.125 481 222 11 34 463 84 549 7.92e-90 285
MS.gene035834.t1 AT4G22070 42.611 406 179 12 26 381 19 420 2.68e-75 246
MS.gene035834.t1 AT4G22070 42.611 406 179 12 26 381 19 420 2.68e-75 246
MS.gene035834.t1 AT4G22070 42.611 406 179 12 26 381 19 420 2.68e-75 246
MS.gene035834.t1 AT4G22070 42.611 406 179 12 26 381 19 420 2.68e-75 246
MS.gene035834.t1 AT4G01720 47.791 249 109 5 221 449 196 443 4.35e-52 183
MS.gene035834.t1 AT1G68150 40.467 257 123 8 100 355 100 327 3.49e-45 162
MS.gene035834.t1 AT5G15130 31.448 442 214 15 93 455 35 466 7.16e-45 165
MS.gene035834.t1 AT5G15130 40.385 260 106 8 242 455 168 424 2.55e-44 162
MS.gene035834.t1 AT1G18860 53.143 175 60 5 239 406 219 378 2.03e-40 152
MS.gene035834.t1 AT1G69810 33.548 310 186 7 86 381 18 321 3.98e-36 138
MS.gene035834.t1 AT1G69810 45.882 170 86 3 213 381 99 263 1.86e-34 132
MS.gene035834.t1 AT1G80840 30.556 288 140 10 176 449 50 291 1.30e-27 112
MS.gene035834.t1 AT4G31800 30.924 249 134 6 91 337 42 254 2.94e-27 111
MS.gene035834.t1 AT4G31800 41.905 105 61 0 233 337 85 189 2.02e-24 102
MS.gene035834.t1 AT1G13960 42.373 118 57 2 202 319 209 315 3.21e-24 103
MS.gene035834.t1 AT1G13960 53.333 60 26 2 260 319 77 134 7.84e-13 70.1
MS.gene035834.t1 AT1G13960 42.373 118 57 2 202 319 362 468 3.62e-24 105
MS.gene035834.t1 AT1G13960 53.333 60 26 2 260 319 230 287 4.86e-13 71.6
MS.gene035834.t1 AT2G38470 38.636 132 66 4 242 373 345 461 5.85e-24 105
MS.gene035834.t1 AT2G38470 45.205 73 37 3 247 319 173 242 1.08e-11 67.4
MS.gene035834.t1 AT1G29860 38.971 136 72 4 243 368 120 254 1.07e-23 100
MS.gene035834.t1 AT5G07100 45.361 97 47 2 239 330 121 216 3.50e-23 97.8
MS.gene035834.t1 AT5G07100 45.361 97 47 2 239 330 121 216 3.50e-23 97.8
MS.gene035834.t1 AT5G07100 45.361 97 47 2 239 330 121 216 3.50e-23 97.8
MS.gene035834.t1 AT5G07100 45.361 97 47 2 239 330 121 216 3.50e-23 97.8
MS.gene035834.t1 AT4G26640 51.282 78 37 1 242 319 188 264 3.58e-23 101
MS.gene035834.t1 AT4G26640 51.282 78 37 1 242 319 188 264 3.58e-23 101
MS.gene035834.t1 AT4G26640 51.282 78 37 1 242 319 188 264 3.58e-23 101
MS.gene035834.t1 AT4G26640 51.282 78 37 1 242 319 188 264 3.58e-23 101
MS.gene035834.t1 AT5G46350 42.969 128 61 4 232 349 147 272 5.96e-23 99.8
MS.gene035834.t1 AT5G07100 45.361 97 47 2 239 330 214 309 6.32e-23 99.4
MS.gene035834.t1 AT4G26640 51.282 78 37 1 242 319 324 400 6.71e-23 102
MS.gene035834.t1 AT4G26640 51.282 78 37 1 242 319 292 368 8.29e-23 101
MS.gene035834.t1 AT4G26640 51.282 78 37 1 242 319 364 440 9.44e-23 101
MS.gene035834.t1 AT2G03340 50.602 83 40 1 237 319 393 474 1.69e-22 100
MS.gene035834.t1 AT2G03340 56.667 60 24 2 260 319 251 308 2.20e-14 75.9
MS.gene035834.t1 AT2G25000 61.290 62 24 0 258 319 102 163 1.95e-22 96.3
MS.gene035834.t1 AT2G25000 61.290 62 24 0 258 319 102 163 1.95e-22 96.3
MS.gene035834.t1 AT2G25000 61.290 62 24 0 258 319 124 185 3.05e-22 96.3
MS.gene035834.t1 AT2G25000 61.290 62 24 0 258 319 145 206 3.62e-22 96.3
MS.gene035834.t1 AT5G26170 50.685 73 35 1 245 317 99 170 4.49e-22 93.6
MS.gene035834.t1 AT5G41570 52.941 85 36 2 243 327 82 162 4.77e-22 93.6
MS.gene035834.t1 AT3G01970 42.991 107 47 2 225 318 18 123 5.14e-22 92.4
MS.gene035834.t1 AT5G56270 49.398 83 41 1 237 319 465 546 5.43e-22 99.8
MS.gene035834.t1 AT5G56270 49.180 61 29 2 260 320 274 332 9.42e-12 67.8
MS.gene035834.t1 AT2G47260 45.545 101 50 2 243 339 158 257 5.74e-22 97.1
MS.gene035834.t1 AT4G18170 51.948 77 36 1 243 319 156 231 7.10e-22 96.7
MS.gene035834.t1 AT2G04880 48.684 76 38 1 245 320 269 343 1.07e-21 97.8
MS.gene035834.t1 AT2G04880 42.500 80 37 3 247 319 92 169 1.85e-11 66.6
MS.gene035834.t1 AT2G04880 48.684 76 38 1 245 320 293 367 1.28e-21 97.8
MS.gene035834.t1 AT2G04880 42.500 80 37 3 247 319 92 169 2.08e-11 66.2
MS.gene035834.t1 AT5G49520 44.944 89 48 1 243 331 205 292 1.96e-21 96.7
MS.gene035834.t1 AT1G64000 53.659 82 34 2 246 327 101 178 2.17e-21 92.4
MS.gene035834.t1 AT3G01080 48.718 78 39 1 242 319 289 365 3.39e-21 96.3
MS.gene035834.t1 AT3G01080 50.000 60 28 2 260 319 168 225 2.32e-11 65.9
MS.gene035834.t1 AT3G01080 48.718 78 39 1 242 319 327 403 3.41e-21 96.3
MS.gene035834.t1 AT3G01080 50.000 60 28 2 260 319 206 263 2.26e-11 66.2
MS.gene035834.t1 AT2G30250 51.282 78 37 1 242 319 311 387 5.21e-21 95.1
MS.gene035834.t1 AT2G46130 44.898 98 50 2 232 329 3 96 1.16e-20 87.4
MS.gene035834.t1 AT1G69310 44.444 81 44 1 236 316 124 203 3.81e-20 90.9
MS.gene035834.t1 AT1G69310 44.444 81 44 1 236 316 124 203 3.81e-20 90.9
MS.gene035834.t1 AT1G69310 44.444 81 44 1 236 316 124 203 3.81e-20 90.9
MS.gene035834.t1 AT5G13080 53.425 73 33 1 246 318 54 125 6.30e-20 86.7
MS.gene035834.t1 AT3G62340 53.247 77 35 1 243 319 102 177 1.95e-19 88.6
MS.gene035834.t1 AT4G30935 49.351 77 38 1 243 319 315 390 5.92e-19 89.7
MS.gene035834.t1 AT1G55600 47.436 78 40 1 243 320 291 367 8.33e-19 89.4
MS.gene035834.t1 AT2G23320 57.627 59 25 0 260 318 241 299 1.28e-18 87.0
MS.gene035834.t1 AT4G26440 40.594 101 57 2 243 343 356 453 1.29e-18 89.0
MS.gene035834.t1 AT1G30650 37.857 140 72 3 194 326 153 284 1.80e-18 87.8
MS.gene035834.t1 AT1G29280 37.168 113 56 1 225 322 25 137 2.42e-18 85.1
MS.gene035834.t1 AT5G28650 53.968 63 29 0 255 317 258 320 2.44e-18 86.3
MS.gene035834.t1 AT4G24240 48.148 81 41 1 239 318 260 340 2.77e-18 86.7
MS.gene035834.t1 AT2G44745 45.333 75 40 1 242 316 128 201 3.37e-18 83.6
MS.gene035834.t1 AT2G30590 45.122 82 41 1 244 321 294 375 3.48e-18 86.7
MS.gene035834.t1 AT2G34830 41.748 103 59 1 225 326 180 282 4.56e-18 86.7
MS.gene035834.t1 AT2G34830 41.748 103 59 1 225 326 189 291 5.32e-18 86.7
MS.gene035834.t1 AT4G23550 44.444 81 45 0 254 334 135 215 6.95e-18 84.7
MS.gene035834.t1 AT4G39410 44.737 76 41 1 242 317 206 280 6.99e-18 84.7
MS.gene035834.t1 AT3G04670 52.381 63 30 0 255 317 258 320 1.20e-17 84.3
MS.gene035834.t1 AT5G64810 46.479 71 37 1 246 316 97 166 1.25e-17 81.6
MS.gene035834.t1 AT4G01250 39.048 105 51 1 259 350 128 232 1.45e-17 83.6
MS.gene035834.t1 AT2G37260 42.105 95 45 3 234 325 248 335 1.48e-17 84.3
MS.gene035834.t1 AT2G37260 46.667 75 36 3 260 332 84 156 2.54e-14 74.7
MS.gene035834.t1 AT2G37260 42.105 95 45 3 234 325 250 337 1.55e-17 84.3
MS.gene035834.t1 AT2G37260 46.667 75 36 3 260 332 86 158 2.45e-14 74.7
MS.gene035834.t1 AT2G37260 42.105 95 45 3 234 325 330 417 2.40e-17 84.7
MS.gene035834.t1 AT2G37260 46.667 75 36 3 260 332 166 238 3.57e-14 74.7
MS.gene035834.t1 AT3G58710 51.429 70 34 0 250 319 62 131 2.73e-17 82.4
MS.gene035834.t1 AT2G46130 41.837 98 49 3 232 329 3 92 2.77e-17 77.8
MS.gene035834.t1 AT3G58710 51.429 70 34 0 250 319 61 130 2.98e-17 82.0
MS.gene035834.t1 AT4G31550 44.737 76 42 0 241 316 228 303 3.27e-17 83.2
MS.gene035834.t1 AT4G31550 44.737 76 42 0 241 316 227 302 3.30e-17 82.8
MS.gene035834.t1 AT2G24570 44.737 76 42 0 241 316 225 300 5.03e-17 82.4
MS.gene035834.t1 AT5G52830 44.156 77 43 0 253 329 159 235 3.10e-16 80.5
MS.gene035834.t1 AT4G31800 28.980 245 124 9 64 296 7 213 1.90e-15 76.3
MS.gene035834.t1 AT1G69310 40.741 81 43 2 236 316 124 199 3.73e-15 76.3
MS.gene035834.t1 AT5G45260 43.434 99 49 3 238 334 1192 1285 2.22e-14 76.6
MS.gene035834.t1 AT5G45050 43.678 87 38 1 259 334 1180 1266 6.12e-14 75.1
MS.gene035834.t1 AT5G45050 43.678 87 38 1 259 334 1152 1238 6.48e-14 75.1
MS.gene035834.t1 AT5G45050 43.678 87 38 1 259 334 1041 1127 6.72e-14 75.1
MS.gene035834.t1 AT5G43290 40.244 82 47 2 240 320 94 174 1.04e-13 71.6
MS.gene035834.t1 AT2G21900 42.424 66 37 1 254 319 104 168 3.84e-13 68.6
MS.gene035834.t1 AT2G46400 43.210 81 44 1 236 314 81 161 2.65e-12 67.8
MS.gene035834.t1 AT3G01080 50.000 60 28 2 260 319 206 263 1.23e-11 66.2
MS.gene035834.t1 AT2G40740 42.500 80 42 2 260 335 174 253 4.38e-11 64.3
MS.gene035834.t1 AT2G40740 42.500 80 42 2 260 335 183 262 5.14e-11 63.9

Find 77 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTATGCTTTATTGCAATTC+TGG 0.191922 3.4:-50135859 None:intergenic
CATAAATTTCTGAGCCAAAA+AGG 0.223319 3.4:-50135657 None:intergenic
GCTGCATAATATGCTCTTCT+AGG 0.248057 3.4:-50133942 None:intergenic
GCAGCATCAATGCTACTTTC+AGG 0.315857 3.4:+50135443 MS.gene035834:CDS
GAGAAAATATGGACAGAAAA+TGG 0.321893 3.4:+50135159 MS.gene035834:CDS
GGATGTCAATGGAGAAAATA+TGG 0.325975 3.4:+50135148 MS.gene035834:CDS
AGCAAGATCAGAAGCTAATA+TGG 0.333642 3.4:+50134576 MS.gene035834:CDS
GATCCACTTTCTAATATTGT+TGG 0.346118 3.4:-50135497 None:intergenic
TTGGTATTACCATTATTGTT+TGG 0.377474 3.4:-50135821 None:intergenic
GCTCCATTTGGTGTAGGGTT+AGG 0.385260 3.4:-50132926 None:intergenic
AATTCAAATCCAAACAATAA+TGG 0.391081 3.4:+50135812 MS.gene035834:CDS
TGTAGGGTTAGGTCATTAAC+TGG 0.394243 3.4:-50132915 None:intergenic
GTATATACTTGCTTCCGAAC+TGG 0.394378 3.4:-50135238 None:intergenic
AAACCATCTGCACTTGTCAT+TGG 0.402705 3.4:-50135467 None:intergenic
TGCTGAAGATAGAAGTGTTT+TGG 0.402931 3.4:+50135346 MS.gene035834:CDS
GCTGCTATAACTTCCATCAT+TGG 0.409700 3.4:+50135785 MS.gene035834:CDS
ACTAGAGCAGATGTGAATTT+CGG 0.415805 3.4:-50135761 None:intergenic
TTTGTTGCTAGGAGAAATCT+TGG 0.415907 3.4:-50133072 None:intergenic
CCCATGTTCAAGAATGGCCT+TGG 0.418842 3.4:-50134292 None:intergenic
CCTGAAAATGCTTTATTAGC+TGG 0.424836 3.4:-50134457 None:intergenic
AAGAATTCATCCTTGGAACT+TGG 0.426508 3.4:-50134492 None:intergenic
TGTTGTTGATGCCATTGCTT+TGG 0.436889 3.4:-50135414 None:intergenic
ATTTGAATTACTTCCAATGA+TGG 0.439445 3.4:-50135798 None:intergenic
GCTTATTATCGTTGCACAAT+GGG 0.441190 3.4:+50135205 MS.gene035834:CDS
GATTTCTCCTAGCAACAAAC+TGG 0.442717 3.4:+50133076 MS.gene035834:CDS
GTTTGAGAGAGCTAATTGAT+AGG 0.446725 3.4:+50133899 MS.gene035834:CDS
CTATCATCCAGTTTGTTGCT+AGG 0.450663 3.4:-50133083 None:intergenic
GTCATTTGCAATGATGCTAT+AGG 0.453317 3.4:+50132780 MS.gene035834:CDS
TGACCTAACCCTACACCAAA+TGG 0.459298 3.4:+50132923 MS.gene035834:CDS
TCCAAGGATGAATTCTTTCA+AGG 0.461640 3.4:+50134498 MS.gene035834:CDS
GATGCCATTGCTTTGGCTGT+TGG 0.463658 3.4:-50135407 None:intergenic
TCTAGTGTGATAGTTGGAAA+TGG 0.469298 3.4:-50135563 None:intergenic
GGTAATACCAATGGTATAAG+TGG 0.473331 3.4:+50135833 MS.gene035834:CDS
TCCAAGGCCATTCTTGAACA+TGG 0.473443 3.4:+50134291 MS.gene035834:CDS
CCAAGGATGAATTCTTTCAA+GGG 0.475452 3.4:+50134499 MS.gene035834:CDS
TTTATTAAATATAGGTTCAA+AGG 0.476329 3.4:+50135321 MS.gene035834:intron
GCAAAACCCATGTTCAAGAA+TGG 0.479173 3.4:-50134298 None:intergenic
CTGGTCTCCACTTATACCAT+TGG 0.482640 3.4:-50135840 None:intergenic
CCCTTGAAAGAATTCATCCT+TGG 0.483873 3.4:-50134499 None:intergenic
CTACGTGATGATGCTCCATT+TGG 0.485074 3.4:-50132938 None:intergenic
CCAAGGCCATTCTTGAACAT+GGG 0.488187 3.4:+50134292 MS.gene035834:CDS
TATGGACAGAAAATGGCAAA+GGG 0.496572 3.4:+50135166 MS.gene035834:CDS
GTGCAACGATAATAAGCTCT+TGG 0.499916 3.4:-50135199 None:intergenic
TTGGCTCAGAAATTTATGTC+AGG 0.499978 3.4:+50135662 MS.gene035834:CDS
TGGGGACTGCTTGTCCAGTT+CGG 0.502808 3.4:+50135224 MS.gene035834:CDS
TGGCTGTTGGTGGTAGTGCA+TGG 0.504214 3.4:-50135394 None:intergenic
GCCATTGCTTTGGCTGTTGG+TGG 0.508626 3.4:-50135404 None:intergenic
CGATAATAAGCTCTTGGACA+TGG 0.509444 3.4:-50135193 None:intergenic
GTAAGATCTAGTGTGATAGT+TGG 0.510940 3.4:-50135569 None:intergenic
AATCCAACAATATTAGAAAG+TGG 0.511191 3.4:+50135494 MS.gene035834:CDS
TATACAAGAGAATACTGAAA+AGG 0.513323 3.4:+50134411 MS.gene035834:CDS
TTATGCAGCTGAAGCAGAAA+CGG 0.537748 3.4:+50133956 MS.gene035834:CDS
AGCTTATTATCGTTGCACAA+TGG 0.538266 3.4:+50135204 MS.gene035834:CDS
GATGATGCTCCATTTGGTGT+AGG 0.540710 3.4:-50132932 None:intergenic
ATGATGCTCCATTTGGTGTA+GGG 0.544067 3.4:-50132931 None:intergenic
AGATTTCAGATGGATGTCAA+TGG 0.544482 3.4:+50135137 MS.gene035834:intron
AATGTATCACAGATTTCAGA+TGG 0.548456 3.4:+50135127 MS.gene035834:intron
AACAATAATGGTAATACCAA+TGG 0.551564 3.4:+50135824 MS.gene035834:CDS
GGCTTTCAAACCAAGTTCCA+AGG 0.554177 3.4:+50134482 MS.gene035834:CDS
CTGCATAATATGCTCTTCTA+GGG 0.557538 3.4:-50133941 None:intergenic
ATGGTATGAATATGATTCCA+AGG 0.557677 3.4:+50134275 MS.gene035834:CDS
ATGATGCTATAGGAAACTCT+AGG 0.558776 3.4:+50132790 MS.gene035834:CDS
GGACCAATGACAAGTGCAGA+TGG 0.572451 3.4:+50135464 MS.gene035834:CDS
GAAGCAACTGAAGAAAAGAA+TGG 0.574998 3.4:+50134256 MS.gene035834:CDS
GTGTATACAGTATGCTGCTG+TGG 0.578588 3.4:+50133840 MS.gene035834:intron
ATAGAGAATATTCTGATGCA+AGG 0.587268 3.4:+50133102 MS.gene035834:CDS
ATATGGACAGAAAATGGCAA+AGG 0.592412 3.4:+50135165 MS.gene035834:CDS
TGATGCAAGGAACCAAAATG+AGG 0.593200 3.4:+50133115 MS.gene035834:CDS
GTTGCCATTGTGTGTGAACA+AGG 0.596687 3.4:-50135524 None:intergenic
ACTCCCTTGTTCACACACAA+TGG 0.625581 3.4:+50135520 MS.gene035834:CDS
ACCACCAACAGCCAAAGCAA+TGG 0.627083 3.4:+50135403 MS.gene035834:CDS
ACTTGAGAAGAAGAAGAATG+TGG 0.627432 3.4:-50132825 None:intergenic
TGATGCTATAGGAAACTCTA+GGG 0.632206 3.4:+50132791 MS.gene035834:CDS
GCAGAAACGGAGTAAACTTG+AGG 0.652579 3.4:+50133969 MS.gene035834:CDS
CTTATTATCGTTGCACAATG+GGG 0.668170 3.4:+50135206 MS.gene035834:CDS
ATGGACAGAAAATGGCAAAG+GGG 0.694485 3.4:+50135167 MS.gene035834:CDS
TTGCCATTGTGTGTGAACAA+GGG 0.728086 3.4:-50135523 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATATATTCTTAATGTAA+AGG - chr3.4:50133815-50133834 None:intergenic 10.0%
!!! ATGTAATCAAATTTTATAAA+AGG - chr3.4:50135274-50135293 None:intergenic 10.0%
!! AATAAAACAAAATTGCAAAA+TGG - chr3.4:50132996-50133015 None:intergenic 15.0%
!! TATGCTTCTTTATTAAATAT+AGG + chr3.4:50135313-50135332 MS.gene035834:intron 15.0%
!! TTTATTAAATATAGGTTCAA+AGG + chr3.4:50135321-50135340 MS.gene035834:intron 15.0%
!!! GAATTGAATTTTACAAATAT+TGG + chr3.4:50133278-50133297 MS.gene035834:intron 15.0%
!!! TAGTTTTTTATATTATTTCC+AGG - chr3.4:50133384-50133403 None:intergenic 15.0%
!! AATTCAAATCCAAACAATAA+TGG + chr3.4:50135812-50135831 MS.gene035834:CDS 20.0%
!! CAATGATTATAATTAAGTGT+AGG + chr3.4:50133325-50133344 MS.gene035834:intron 20.0%
!! TAATGGAAAAAGACTAATTA+TGG + chr3.4:50132857-50132876 MS.gene035834:CDS 20.0%
!! TCTATATACTAGTGTATATT+GGG + chr3.4:50135024-50135043 MS.gene035834:intron 20.0%
!! TTCATTCAAATAATCGAAAA+CGG + chr3.4:50133646-50133665 MS.gene035834:intron 20.0%
!!! ATTCAAAAGTTTTACAACAA+TGG + chr3.4:50134385-50134404 MS.gene035834:CDS 20.0%
!!! ATTTTTCCTGTAATTAAATC+CGG - chr3.4:50134038-50134057 None:intergenic 20.0%
!!! GAATTTTACAAATATTGGAT+TGG + chr3.4:50133283-50133302 MS.gene035834:intron 20.0%
!!! TAAGATTTTGTTCTTACAAA+TGG + chr3.4:50134157-50134176 MS.gene035834:intron 20.0%
!!! TTAACAAATTTTAGCATAGA+TGG + chr3.4:50134680-50134699 MS.gene035834:intron 20.0%
!!! TTAATTTTTTGGACAAGTTT+TGG + chr3.4:50134946-50134965 MS.gene035834:intron 20.0%
! AAAAAGACTAATTATGGATG+AGG + chr3.4:50132863-50132882 MS.gene035834:CDS 25.0%
! AACAATAATGGTAATACCAA+TGG + chr3.4:50135824-50135843 MS.gene035834:CDS 25.0%
! AATCCAACAATATTAGAAAG+TGG + chr3.4:50135494-50135513 MS.gene035834:CDS 25.0%
! ACTTCACAAAAATGTAATGT+GGG + chr3.4:50133415-50133434 MS.gene035834:intron 25.0%
! ATAAATTTCTGAGCCAAAAA+GGG - chr3.4:50135659-50135678 None:intergenic 25.0%
! ATTTGAATTACTTCCAATGA+TGG - chr3.4:50135801-50135820 None:intergenic 25.0%
! CAAAGTTAAACACAAAACTA+CGG + chr3.4:50133445-50133464 MS.gene035834:intron 25.0%
! CTAGTTTAATGACTAACATA+TGG + chr3.4:50134208-50134227 MS.gene035834:intron 25.0%
! GTCTATATACTAGTGTATAT+TGG + chr3.4:50135023-50135042 MS.gene035834:intron 25.0%
! TAATGACTAACATATGGATT+TGG + chr3.4:50134214-50134233 MS.gene035834:intron 25.0%
! TACTTCACAAAAATGTAATG+TGG + chr3.4:50133414-50133433 MS.gene035834:intron 25.0%
! TAGCGAAGAAAAATGTTATT+TGG + chr3.4:50133744-50133763 MS.gene035834:intron 25.0%
! TAGTATATAGACAAGTTCTA+CGG - chr3.4:50135015-50135034 None:intergenic 25.0%
! TATACAAGAGAATACTGAAA+AGG + chr3.4:50134411-50134430 MS.gene035834:CDS 25.0%
! TCAACTTTATAATAGAGTGA+TGG - chr3.4:50133355-50133374 None:intergenic 25.0%
! TTGGTATTACCATTATTGTT+TGG - chr3.4:50135824-50135843 None:intergenic 25.0%
!! AAAATGAGGTATGTTTTTCT+TGG + chr3.4:50133129-50133148 MS.gene035834:intron 25.0%
!! AAGAAAAACATACCTCATTT+TGG - chr3.4:50133130-50133149 None:intergenic 25.0%
!! ATGTCAGGTTCAAATATTTT+TGG + chr3.4:50135677-50135696 MS.gene035834:CDS 25.0%
!! TAACATTTTTCTTCGCTATA+AGG - chr3.4:50133742-50133761 None:intergenic 25.0%
!! TTCAGTCTTTATTTCGAATT+TGG + chr3.4:50134824-50134843 MS.gene035834:intron 25.0%
!!! AGGTTCAAATATTTTTGGAA+TGG + chr3.4:50135682-50135701 MS.gene035834:CDS 25.0%
AAAGAAGAATGATCATGTGA+TGG - chr3.4:50133257-50133276 None:intergenic 30.0%
AATGTATCACAGATTTCAGA+TGG + chr3.4:50135127-50135146 MS.gene035834:intron 30.0%
AGTTACCTAATATACGTTCA+TGG - chr3.4:50133574-50133593 None:intergenic 30.0%
AGTTTGATAAATGTTGTGAC+TGG - chr3.4:50134986-50135005 None:intergenic 30.0%
ATAGAGAATATTCTGATGCA+AGG + chr3.4:50133102-50133121 MS.gene035834:CDS 30.0%
ATGGTATGAATATGATTCCA+AGG + chr3.4:50134275-50134294 MS.gene035834:CDS 30.0%
CATAAATTTCTGAGCCAAAA+AGG - chr3.4:50135660-50135679 None:intergenic 30.0%
GAATAAGCCTTAATCGAAAA+CGG + chr3.4:50133689-50133708 MS.gene035834:intron 30.0%
GAGAAAATATGGACAGAAAA+TGG + chr3.4:50135159-50135178 MS.gene035834:CDS 30.0%
GATCCACTTTCTAATATTGT+TGG - chr3.4:50135500-50135519 None:intergenic 30.0%
TAGAAAAGTTGAAATAGCGA+CGG + chr3.4:50134725-50134744 MS.gene035834:intron 30.0%
TTCACAAGAGAGAAAAAACA+TGG + chr3.4:50134333-50134352 MS.gene035834:CDS 30.0%
TTCGATTAAGGCTTATTCTA+GGG - chr3.4:50133687-50133706 None:intergenic 30.0%
TTTCGATTAAGGCTTATTCT+AGG - chr3.4:50133688-50133707 None:intergenic 30.0%
! AATGAAACCGTTTTCGATTA+AGG - chr3.4:50133656-50133675 None:intergenic 30.0%
! TCTCAAGTCATGTCTTTTAA+TGG + chr3.4:50132840-50132859 MS.gene035834:CDS 30.0%
! TTCCCTTAAGATTTTCAAAC+CGG + chr3.4:50134851-50134870 MS.gene035834:intron 30.0%
!! AAAAAACATGGTTGACTTGA+TGG + chr3.4:50134345-50134364 MS.gene035834:CDS 30.0%
!! AAAAAATCAACTAGTTCTGC+CGG + chr3.4:50134016-50134035 MS.gene035834:intron 30.0%
!! CAGCTAATAAAGCATTTTCA+GGG + chr3.4:50134458-50134477 MS.gene035834:CDS 30.0%
!! GTTTTGGTAACAACATATGA+AGG + chr3.4:50135362-50135381 MS.gene035834:CDS 30.0%
!!! AACAATTTTGTTGTTCGACA+AGG + chr3.4:50133769-50133788 MS.gene035834:intron 30.0%
!!! ATGTTTTTTCTCTCTTGTGA+AGG - chr3.4:50134334-50134353 None:intergenic 30.0%
AAGAATTCATCCTTGGAACT+TGG - chr3.4:50134495-50134514 None:intergenic 35.0%
ACTAGAGCAGATGTGAATTT+CGG - chr3.4:50135764-50135783 None:intergenic 35.0%
ACTTGAGAAGAAGAAGAATG+TGG - chr3.4:50132828-50132847 None:intergenic 35.0%
AGATTTCAGATGGATGTCAA+TGG + chr3.4:50135137-50135156 MS.gene035834:intron 35.0%
AGCAAGATCAGAAGCTAATA+TGG + chr3.4:50134576-50134595 MS.gene035834:CDS 35.0%
AGCTTATTATCGTTGCACAA+TGG + chr3.4:50135204-50135223 MS.gene035834:CDS 35.0%
ATATGGACAGAAAATGGCAA+AGG + chr3.4:50135165-50135184 MS.gene035834:CDS 35.0%
ATGATGCTATAGGAAACTCT+AGG + chr3.4:50132790-50132809 MS.gene035834:CDS 35.0%
CCAAGGATGAATTCTTTCAA+GGG + chr3.4:50134499-50134518 MS.gene035834:CDS 35.0%
CTACACCATGAACGTATATT+AGG + chr3.4:50133566-50133585 MS.gene035834:intron 35.0%
CTGCATAATATGCTCTTCTA+GGG - chr3.4:50133944-50133963 None:intergenic 35.0%
CTTATTATCGTTGCACAATG+GGG + chr3.4:50135206-50135225 MS.gene035834:CDS 35.0%
CTTGAACATATAACGATGAG+TGG - chr3.4:50134184-50134203 None:intergenic 35.0%
GAAGCAACTGAAGAAAAGAA+TGG + chr3.4:50134256-50134275 MS.gene035834:CDS 35.0%
GCTTATTATCGTTGCACAAT+GGG + chr3.4:50135205-50135224 MS.gene035834:CDS 35.0%
GGATGTCAATGGAGAAAATA+TGG + chr3.4:50135148-50135167 MS.gene035834:CDS 35.0%
GGTAATACCAATGGTATAAG+TGG + chr3.4:50135833-50135852 MS.gene035834:CDS 35.0%
GTAAGATCTAGTGTGATAGT+TGG - chr3.4:50135572-50135591 None:intergenic 35.0%
GTCATTTGCAATGATGCTAT+AGG + chr3.4:50132780-50132799 MS.gene035834:CDS 35.0%
GTTTGAGAGAGCTAATTGAT+AGG + chr3.4:50133899-50133918 MS.gene035834:CDS 35.0%
TATATAGACAAGTTCTACGG+AGG - chr3.4:50135012-50135031 None:intergenic 35.0%
TATGGACAGAAAATGGCAAA+GGG + chr3.4:50135166-50135185 MS.gene035834:CDS 35.0%
TCACAAAAACAACTACAGCA+AGG + chr3.4:50135614-50135633 MS.gene035834:CDS 35.0%
TCCAAGGATGAATTCTTTCA+AGG + chr3.4:50134498-50134517 MS.gene035834:CDS 35.0%
TCGCTATAAGGCTTATTCTA+GGG - chr3.4:50133730-50133749 None:intergenic 35.0%
TCTAGTGTGATAGTTGGAAA+TGG - chr3.4:50135566-50135585 None:intergenic 35.0%
TGATGCTATAGGAAACTCTA+GGG + chr3.4:50132791-50132810 MS.gene035834:CDS 35.0%
TTCGCTATAAGGCTTATTCT+AGG - chr3.4:50133731-50133750 None:intergenic 35.0%
TTGGCTCAGAAATTTATGTC+AGG + chr3.4:50135662-50135681 MS.gene035834:CDS 35.0%
TTTGTTGCTAGGAGAAATCT+TGG - chr3.4:50133075-50133094 None:intergenic 35.0%
! CCTGAAAATGCTTTATTAGC+TGG - chr3.4:50134460-50134479 None:intergenic 35.0%
! TTGAACATGGGTTTTGCTAA+AGG + chr3.4:50134304-50134323 MS.gene035834:CDS 35.0%
! TTTTAGCATAGATGGCTAGT+TGG + chr3.4:50134688-50134707 MS.gene035834:intron 35.0%
!! ACACCGGTTTGAAAATCTTA+AGG - chr3.4:50134857-50134876 None:intergenic 35.0%
!! ATGATCATGTGATGGATGAT+AGG - chr3.4:50133249-50133268 None:intergenic 35.0%
!! CACCGGTTTGAAAATCTTAA+GGG - chr3.4:50134856-50134875 None:intergenic 35.0%
!! CCAGCTAATAAAGCATTTTC+AGG + chr3.4:50134457-50134476 MS.gene035834:CDS 35.0%
!! CTAATAAAGCATTTTCAGGG+TGG + chr3.4:50134461-50134480 MS.gene035834:CDS 35.0%
!! GTTGATTTTCAGCATTCGTT+TGG - chr3.4:50133879-50133898 None:intergenic 35.0%
!! TATTGAGCCTCTACTTTTAG+AGG + chr3.4:50134914-50134933 MS.gene035834:intron 35.0%
!! TTATAAAGTTGAGTTGAGCC+TGG + chr3.4:50133363-50133382 MS.gene035834:intron 35.0%
!!! TGCTGAAGATAGAAGTGTTT+TGG + chr3.4:50135346-50135365 MS.gene035834:CDS 35.0%
AAACCATCTGCACTTGTCAT+TGG - chr3.4:50135470-50135489 None:intergenic 40.0%
AAGTCTCTCTTTGAGTAGTG+TGG + chr3.4:50134882-50134901 MS.gene035834:intron 40.0%
ACACTACTCAAAGAGAGACT+TGG - chr3.4:50134883-50134902 None:intergenic 40.0%
AGCAGCATACTGTATACACA+AGG - chr3.4:50133839-50133858 None:intergenic 40.0%
ATGGACAGAAAATGGCAAAG+GGG + chr3.4:50135167-50135186 MS.gene035834:CDS 40.0%
ATTTCTGAGCCAAAAAGGGT+TGG - chr3.4:50135655-50135674 None:intergenic 40.0%
CCCTTGAAAGAATTCATCCT+TGG - chr3.4:50134502-50134521 None:intergenic 40.0%
CGATAATAAGCTCTTGGACA+TGG - chr3.4:50135196-50135215 None:intergenic 40.0%
CTTTGAGTAGTGTGGACAAA+AGG + chr3.4:50134890-50134909 MS.gene035834:intron 40.0%
GATTTCTCCTAGCAACAAAC+TGG + chr3.4:50133076-50133095 MS.gene035834:CDS 40.0%
GCAAAACCCATGTTCAAGAA+TGG - chr3.4:50134301-50134320 None:intergenic 40.0%
GCTGCATAATATGCTCTTCT+AGG - chr3.4:50133945-50133964 None:intergenic 40.0%
GCTGCTATAACTTCCATCAT+TGG + chr3.4:50135785-50135804 MS.gene035834:CDS 40.0%
GTATATACTTGCTTCCGAAC+TGG - chr3.4:50135241-50135260 None:intergenic 40.0%
GTGCAACGATAATAAGCTCT+TGG - chr3.4:50135202-50135221 None:intergenic 40.0%
GTTCTGCCGGATTTAATTAC+AGG + chr3.4:50134029-50134048 MS.gene035834:intron 40.0%
GTTGAAATAGCGACGGAAAA+AGG + chr3.4:50134732-50134751 MS.gene035834:intron 40.0%
TGATGCAAGGAACCAAAATG+AGG + chr3.4:50133115-50133134 MS.gene035834:CDS 40.0%
TGTAGGGTTAGGTCATTAAC+TGG - chr3.4:50132918-50132937 None:intergenic 40.0%
TGTTGTTGATGCCATTGCTT+TGG - chr3.4:50135417-50135436 None:intergenic 40.0%
TTATGCAGCTGAAGCAGAAA+CGG + chr3.4:50133956-50133975 MS.gene035834:CDS 40.0%
TTGCCATTGTGTGTGAACAA+GGG - chr3.4:50135526-50135545 None:intergenic 40.0%
! GTAGAAAACCTGGACTTGTT+AGG - chr3.4:50133550-50133569 None:intergenic 40.0%
!! ATGATGCTCCATTTGGTGTA+GGG - chr3.4:50132934-50132953 None:intergenic 40.0%
!! CTATCATCCAGTTTGTTGCT+AGG - chr3.4:50133086-50133105 None:intergenic 40.0%
!!! GGACGGCGTCATTAATTTTT+TGG + chr3.4:50134935-50134954 MS.gene035834:intron 40.0%
ACTCCCTTGTTCACACACAA+TGG + chr3.4:50135520-50135539 MS.gene035834:CDS 45.0%
CCAAGGCCATTCTTGAACAT+GGG + chr3.4:50134292-50134311 MS.gene035834:CDS 45.0%
CGTTCATGGTGTAGAAAACC+TGG - chr3.4:50133560-50133579 None:intergenic 45.0%
CTGGTCTCCACTTATACCAT+TGG - chr3.4:50135843-50135862 None:intergenic 45.0%
GCAGAAACGGAGTAAACTTG+AGG + chr3.4:50133969-50133988 MS.gene035834:CDS 45.0%
GGCTTTCAAACCAAGTTCCA+AGG + chr3.4:50134482-50134501 MS.gene035834:CDS 45.0%
GTGTATACAGTATGCTGCTG+TGG + chr3.4:50133840-50133859 MS.gene035834:intron 45.0%
GTTGCCATTGTGTGTGAACA+AGG - chr3.4:50135527-50135546 None:intergenic 45.0%
TCCAAGGCCATTCTTGAACA+TGG + chr3.4:50134291-50134310 MS.gene035834:CDS 45.0%
TGACCTAACCCTACACCAAA+TGG + chr3.4:50132923-50132942 MS.gene035834:CDS 45.0%
! AAGAGAGACTTGGTTGACAC+CGG - chr3.4:50134873-50134892 None:intergenic 45.0%
! CAACCTTCTCCAACCCTTTT+TGG + chr3.4:50135643-50135662 MS.gene035834:CDS 45.0%
! CTACGTGATGATGCTCCATT+TGG - chr3.4:50132941-50132960 None:intergenic 45.0%
!! GAGCCTCTACTTTTAGAGGA+CGG + chr3.4:50134918-50134937 MS.gene035834:intron 45.0%
!! GATGATGCTCCATTTGGTGT+AGG - chr3.4:50132935-50132954 None:intergenic 45.0%
!! GCAGCATCAATGCTACTTTC+AGG + chr3.4:50135443-50135462 MS.gene035834:CDS 45.0%
!! AAAAAGTAATTTAATTATAT+TGG + chr3.4:50134107-50134126 MS.gene035834:intron 5.0%
ACCACCAACAGCCAAAGCAA+TGG + chr3.4:50135403-50135422 MS.gene035834:CDS 50.0%
CCCATGTTCAAGAATGGCCT+TGG - chr3.4:50134295-50134314 None:intergenic 50.0%
GAGCCAAAAAGGGTTGGAGA+AGG - chr3.4:50135649-50135668 None:intergenic 50.0%
GATGCCATTGCTTTGGCTGT+TGG - chr3.4:50135410-50135429 None:intergenic 50.0%
GGACCAATGACAAGTGCAGA+TGG + chr3.4:50135464-50135483 MS.gene035834:CDS 50.0%
! ACGCCGTCCTCTAAAAGTAG+AGG - chr3.4:50134924-50134943 None:intergenic 50.0%
!! ACCTGGACTTGTTAGGTGTC+AGG - chr3.4:50133543-50133562 None:intergenic 50.0%
!! GCTCCATTTGGTGTAGGGTT+AGG - chr3.4:50132929-50132948 None:intergenic 50.0%
GCCATTGCTTTGGCTGTTGG+TGG - chr3.4:50135407-50135426 None:intergenic 55.0%
GCCTGACACCTAACAAGTCC+AGG + chr3.4:50133539-50133558 MS.gene035834:intron 55.0%
TGGGGACTGCTTGTCCAGTT+CGG + chr3.4:50135224-50135243 MS.gene035834:CDS 55.0%
!! TGGCTGTTGGTGGTAGTGCA+TGG - chr3.4:50135397-50135416 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 50132768 50135880 50132768 ID=MS.gene035834
chr3.4 mRNA 50132768 50135880 50132768 ID=MS.gene035834.t1;Parent=MS.gene035834
chr3.4 exon 50132768 50132962 50132768 ID=MS.gene035834.t1.exon1;Parent=MS.gene035834.t1
chr3.4 CDS 50132768 50132962 50132768 ID=cds.MS.gene035834.t1;Parent=MS.gene035834.t1
chr3.4 exon 50133053 50133136 50133053 ID=MS.gene035834.t1.exon2;Parent=MS.gene035834.t1
chr3.4 CDS 50133053 50133136 50133053 ID=cds.MS.gene035834.t1;Parent=MS.gene035834.t1
chr3.4 exon 50133850 50133990 50133850 ID=MS.gene035834.t1.exon3;Parent=MS.gene035834.t1
chr3.4 CDS 50133850 50133990 50133850 ID=cds.MS.gene035834.t1;Parent=MS.gene035834.t1
chr3.4 exon 50134247 50134597 50134247 ID=MS.gene035834.t1.exon4;Parent=MS.gene035834.t1
chr3.4 CDS 50134247 50134597 50134247 ID=cds.MS.gene035834.t1;Parent=MS.gene035834.t1
chr3.4 exon 50135139 50135252 50135139 ID=MS.gene035834.t1.exon5;Parent=MS.gene035834.t1
chr3.4 CDS 50135139 50135252 50135139 ID=cds.MS.gene035834.t1;Parent=MS.gene035834.t1
chr3.4 exon 50135335 50135880 50135335 ID=MS.gene035834.t1.exon6;Parent=MS.gene035834.t1
chr3.4 CDS 50135335 50135880 50135335 ID=cds.MS.gene035834.t1;Parent=MS.gene035834.t1
Gene Sequence

>MS.gene035834

ATGGAAGAAGAAGTCATTTGCAATGATGCTATAGGAAACTCTAGGGTTGTTGAAGTTCCACATTCTTCTTCTTCTCAAGTCATGTCTTTTAATGGAAAAAGACTAATTATGGATGAGGTTGATTTCTTTGCAGAGAAGAAAATGAGTCCAGTTAATGACCTAACCCTACACCAAATGGAGCATCATCACGTAGATGTAATTGAACTCATAATTTCATTAGATATTCCATTTTGCAATTTTGTTTTATTTTTTACTAAAAGAGCTAATTTGTTGATGATTTTTTAGACTAGTTTAGATCTTCTCACCAAGATTTCTCCTAGCAACAAACTGGATGATAGAGAATATTCTGATGCAAGGAACCAAAATGAGGTATGTTTTTCTTGGTGTTCATCTATAGACTATAGATATTGTTTTGATTTTGTTAAGAAAGATTTTTATTTTCTTTCACATTATCACAACATATAGCTTTCTATATTTTCCTATCATCCATCACATGATCATTCTTCTTTCGAATTGAATTTTACAAATATTGGATTGGATATGTGATATGACTTCAACAATGATTATAATTAAGTGTAGGAAATCCATCACTCTATTATAAAGTTGAGTTGAGCCTGGAAATAATATAAAAAACTAAGAAAAACAATACTTCACAAAAATGTAATGTGGGAAAACTTCAAAGTTAAACACAAAACTACGGTTTTTGTCTAATGAAGACTAAATAAGTAGAACACTCTAATTTTTTTCACAATACATGAAATTTTCTCAAACGCCTGACACCTAACAAGTCCAGGTTTTCTACACCATGAACGTATATTAGGTAACTTAATTATACAATGATTATTAATGATTTTATGCATAAAAAAATTCTAAAAGAATTCATTCAAATAATCGAAAACGGTTTCATTTCTTCTTGCCCTAGAATAAGCCTTAATCGAAAACGGTTTCATTTCTTCTTGCCCTAGAATAAGCCTTATAGCGAAGAAAAATGTTATTTGGACAACAATTTTGTTGTTCGACAAGGTGTGTTTGTATGTATATTTTCCTTTACATTAAGAATATATTTTTCCTTGTGTATACAGTATGCTGCTGTGGTAGCTAAATTGCACCAAACGAATGCTGAAAATCAACGTTTGAGAGAGCTAATTGATAGGCTTAGAATTGATCACAATGCCCTAGAAGAGCATATTATGCAGCTGAAGCAGAAACGGAGTAAACTTGAGGTAGTTCTATTCTTTCTTTTATAAAAAAAAATCAACTAGTTCTGCCGGATTTAATTACAGGAAAAATAATTAATTATAATCATATTGAAAATAATTTAATTATATAATACAATTAAAAAAAGTAATTTAATTATATTGGATTTAAAGTTTAAAGTATAACTTATTTTAAGATTTTGTTCTTACAAATGGACCACTCATCGTTATATGTTCAAGCTAGCTAGTTTAATGACTAACATATGGATTTGGTTTTGTATAGATTAATGATGAAGCAACTGAAGAAAAGAATGGTATGAATATGATTCCAAGGCCATTCTTGAACATGGGTTTTGCTAAAGGTGAGCCTTCACAAGAGAGAAAAAACATGGTTGACTTGATGGAATGTGATAAAAAGAGTATTCAAAAGTTTTACAACAATGGAATTATACAAGAGAATACTGAAAAGGAAGAAGATCATCATGAGAATTCACCAGCTAATAAAGCATTTTCAGGGTGGCTTTCAAACCAAGTTCCAAGGATGAATTCTTTCAAGGGTGTTGATGATCAAGCTTCAGAATCAATGATTAAGAAAGCTCGTGTCTCAGTTAGAGCAAGATCAGAAGCTAATATGGTTAGTGTTAGATTAAGTAGCAAATCATGCATGTTTATATCTTTCAAAACTTTTCAATTAATGATATCTCACATCTAGTTAATTAACAAATTTTAGCATAGATGGCTAGTTGGTGAATTCTAACAGATAGAAAAGTTGAAATAGCGACGGAAAAAGGCAAAATATGTCTCTAACTTCATCGCTAAGTGTTTAATTTAGTGAGCAATTTTATTTTTATGTCTCAAATTTCAGTCTTTATTTCGAATTTGGTGAATTCCCTTAAGATTTTCAAACCGGTGTCAACCAAGTCTCTCTTTGAGTAGTGTGGACAAAAGGATATTGAGCCTCTACTTTTAGAGGACGGCGTCATTAATTTTTTGGACAAGTTTTGGACAATTTTCAAACACCAGTCACAACATTTATCAAACTAGTCCTCCGTAGAACTTGTCTATATACTAGTGTATATTGGGTGTGTATTGTTGAAGTACAACGATATTGTATTCTCTATGAATTATAATTGCTGCTAGACTAATTTTCTTTGTGATCAATTAATGTATCACAGATTTCAGATGGATGTCAATGGAGAAAATATGGACAGAAAATGGCAAAGGGGAATCCATGTCCAAGAGCTTATTATCGTTGCACAATGGGGACTGCTTGTCCAGTTCGGAAGCAAGTATATACAATCTCTCTACCTTTTATAAAATTTGATTACATACTTCTACATTTTAATTATTATGCTTCTTTATTAAATATAGGTTCAAAGGTGTGCTGAAGATAGAAGTGTTTTGGTAACAACATATGAAGGACAACATAACCATGCACTACCACCAACAGCCAAAGCAATGGCATCAACAACAACATCAGCAGCATCAATGCTACTTTCAGGACCAATGACAAGTGCAGATGGTTTAATAAATCCAACAATATTAGAAAGTGGATCACTCCCTTGTTCACACACAATGGCAACACTCTCAGCTTCAGCTCCATTTCCAACTATCACACTAGATCTTACTGAAGAAGCTATCAATAATTCTTCACAAAAACAACTACAGCAAGGACAGTTCAACCTTCTCCAACCCTTTTTGGCTCAGAAATTTATGTCAGGTTCAAATATTTTTGGAATGGAAAATTCTTCATTTGCTGATACAATTAGTGCTGCAACAGCTGCTATGACTTCTGATCCGAAATTCACATCTGCTCTAGTTGCTGCTATAACTTCCATCATTGGAAGTAATTCAAATCCAAACAATAATGGTAATACCAATGGTATAAGTGGAGACCAGAATTGCAATAAAGCATAG
Protein sequence

>MS.gene035834.t1

MEEEVICNDAIGNSRVVEVPHSSSSQVMSFNGKRLIMDEVDFFAEKKMSPVNDLTLHQMEHHHVDTSLDLLTKISPSNKLDDREYSDARNQNEYAAVVAKLHQTNAENQRLRELIDRLRIDHNALEEHIMQLKQKRSKLEINDEATEEKNGMNMIPRPFLNMGFAKGEPSQERKNMVDLMECDKKSIQKFYNNGIIQENTEKEEDHHENSPANKAFSGWLSNQVPRMNSFKGVDDQASESMIKKARVSVRARSEANMISDGCQWRKYGQKMAKGNPCPRAYYRCTMGTACPVRKQVQRCAEDRSVLVTTYEGQHNHALPPTAKAMASTTTSAASMLLSGPMTSADGLINPTILESGSLPCSHTMATLSASAPFPTITLDLTEEAINNSSQKQLQQGQFNLLQPFLAQKFMSGSNIFGMENSSFADTISAATAAMTSDPKFTSALVAAITSIIGSNSNPNNNGNTNGISGDQNCNKA