Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene035858.t1 | XP_024632961.1 | 87.1 | 319 | 33 | 1 | 1 | 311 | 81 | 399 | 2.70E-160 | 574.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene035858.t1 | Q9SZL8 | 30.7 | 300 | 195 | 3 | 6 | 305 | 104 | 390 | 6.9e-40 | 166.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene035858.t1 | D3YBB9 | 82.3 | 310 | 55 | 0 | 2 | 311 | 114 | 423 | 1.1e-150 | 542.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene035858.t1 | TF | FAR1 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene035858.t1 | MTR_0558s0020 | 87.879 | 231 | 28 | 0 | 1 | 231 | 66 | 296 | 1.78e-155 | 437 |
MS.gene035858.t1 | MTR_6g090505 | 83.544 | 237 | 39 | 0 | 1 | 237 | 1 | 237 | 4.39e-148 | 421 |
MS.gene035858.t1 | MTR_1g083640 | 89.216 | 204 | 22 | 0 | 1 | 204 | 81 | 284 | 2.15e-138 | 394 |
MS.gene035858.t1 | MTR_8g446020 | 78.947 | 228 | 48 | 0 | 4 | 231 | 29 | 256 | 3.63e-133 | 379 |
MS.gene035858.t1 | MTR_2g014100 | 86.628 | 172 | 23 | 0 | 1 | 172 | 74 | 245 | 6.01e-110 | 320 |
MS.gene035858.t1 | MTR_0337s0040 | 76.684 | 193 | 45 | 0 | 4 | 196 | 30 | 222 | 1.95e-107 | 313 |
MS.gene035858.t1 | MTR_1g055240 | 87.324 | 142 | 18 | 0 | 27 | 168 | 3 | 144 | 5.63e-89 | 263 |
MS.gene035858.t1 | MTR_0019s0290 | 81.579 | 152 | 28 | 0 | 18 | 169 | 9 | 160 | 3.74e-88 | 261 |
MS.gene035858.t1 | MTR_3g008240 | 85.507 | 138 | 20 | 0 | 1 | 138 | 66 | 203 | 1.83e-82 | 248 |
MS.gene035858.t1 | MTR_4g040430 | 84.058 | 138 | 18 | 1 | 1 | 138 | 65 | 198 | 2.89e-80 | 243 |
MS.gene035858.t1 | MTR_5g071590 | 79.612 | 103 | 21 | 0 | 1 | 103 | 78 | 180 | 1.41e-57 | 184 |
MS.gene035858.t1 | MTR_6g051425 | 34.454 | 238 | 144 | 3 | 21 | 258 | 64 | 289 | 1.09e-38 | 140 |
MS.gene035858.t1 | MTR_1281s0010 | 79.365 | 63 | 13 | 0 | 1 | 63 | 47 | 109 | 2.77e-29 | 108 |
MS.gene035858.t1 | MTR_1g070355 | 25.532 | 282 | 190 | 6 | 21 | 298 | 119 | 384 | 8.04e-17 | 81.6 |
MS.gene035858.t1 | MTR_0337s0050 | 75.000 | 36 | 9 | 0 | 195 | 230 | 14 | 49 | 2.39e-14 | 67.8 |
MS.gene035858.t1 | MTR_0402s0040 | 26.000 | 150 | 96 | 3 | 20 | 169 | 71 | 205 | 1.84e-13 | 71.2 |
MS.gene035858.t1 | MTR_4g035820 | 24.096 | 332 | 219 | 12 | 16 | 324 | 89 | 410 | 7.45e-12 | 66.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene035858.t1 | AT4G38180 | 32.168 | 286 | 181 | 3 | 20 | 305 | 118 | 390 | 2.05e-47 | 170 |
MS.gene035858.t1 | AT3G06250 | 27.178 | 287 | 153 | 5 | 20 | 305 | 235 | 466 | 8.65e-32 | 125 |
MS.gene035858.t1 | AT3G06250 | 27.178 | 287 | 153 | 5 | 20 | 305 | 235 | 466 | 8.65e-32 | 125 |
MS.gene035858.t1 | AT3G06250 | 27.178 | 287 | 153 | 5 | 20 | 305 | 235 | 466 | 8.65e-32 | 125 |
MS.gene035858.t1 | AT4G15090 | 29.278 | 263 | 183 | 3 | 59 | 320 | 121 | 381 | 2.45e-31 | 124 |
MS.gene035858.t1 | AT4G15090 | 29.278 | 263 | 183 | 3 | 59 | 320 | 121 | 381 | 2.45e-31 | 124 |
MS.gene035858.t1 | AT4G15090 | 29.278 | 263 | 183 | 3 | 59 | 320 | 121 | 381 | 2.45e-31 | 124 |
MS.gene035858.t1 | AT4G15090 | 29.278 | 263 | 183 | 3 | 59 | 320 | 121 | 381 | 2.45e-31 | 124 |
MS.gene035858.t1 | AT4G15090 | 29.278 | 263 | 183 | 3 | 59 | 320 | 121 | 381 | 2.45e-31 | 124 |
MS.gene035858.t1 | AT2G27110 | 29.918 | 244 | 154 | 4 | 62 | 303 | 107 | 335 | 4.46e-31 | 124 |
MS.gene035858.t1 | AT2G27110 | 29.918 | 244 | 154 | 4 | 62 | 303 | 107 | 335 | 4.46e-31 | 124 |
MS.gene035858.t1 | AT2G27110 | 36.129 | 155 | 99 | 0 | 149 | 303 | 36 | 190 | 3.15e-30 | 121 |
MS.gene035858.t1 | AT5G28530 | 26.875 | 320 | 200 | 7 | 5 | 303 | 84 | 390 | 1.58e-28 | 116 |
MS.gene035858.t1 | AT5G28530 | 26.875 | 320 | 200 | 7 | 5 | 303 | 84 | 390 | 1.58e-28 | 116 |
MS.gene035858.t1 | AT5G28530 | 26.875 | 320 | 200 | 7 | 5 | 303 | 84 | 390 | 1.82e-28 | 116 |
MS.gene035858.t1 | AT1G10240 | 27.376 | 263 | 183 | 4 | 46 | 303 | 107 | 366 | 1.97e-27 | 113 |
MS.gene035858.t1 | AT1G10240 | 27.376 | 263 | 183 | 4 | 46 | 303 | 107 | 366 | 1.97e-27 | 113 |
MS.gene035858.t1 | AT1G76320 | 26.644 | 289 | 184 | 5 | 19 | 305 | 41 | 303 | 2.76e-27 | 112 |
MS.gene035858.t1 | AT1G76320 | 26.644 | 289 | 184 | 5 | 19 | 305 | 41 | 303 | 2.90e-27 | 112 |
MS.gene035858.t1 | AT1G76320 | 26.644 | 289 | 184 | 5 | 19 | 305 | 41 | 303 | 2.90e-27 | 112 |
MS.gene035858.t1 | AT1G76320 | 26.644 | 289 | 184 | 5 | 19 | 305 | 41 | 303 | 3.06e-27 | 112 |
MS.gene035858.t1 | AT5G18960 | 25.424 | 295 | 163 | 7 | 20 | 311 | 256 | 496 | 6.80e-27 | 111 |
MS.gene035858.t1 | AT5G18960 | 25.424 | 295 | 163 | 7 | 20 | 311 | 256 | 496 | 6.80e-27 | 111 |
MS.gene035858.t1 | AT2G32250 | 27.063 | 303 | 159 | 6 | 5 | 305 | 68 | 310 | 2.79e-26 | 109 |
MS.gene035858.t1 | AT2G32250 | 27.063 | 303 | 159 | 6 | 5 | 305 | 68 | 310 | 2.79e-26 | 109 |
MS.gene035858.t1 | AT2G32250 | 27.070 | 314 | 164 | 7 | 5 | 316 | 68 | 318 | 2.82e-26 | 109 |
MS.gene035858.t1 | AT2G32250 | 27.070 | 314 | 164 | 7 | 5 | 316 | 68 | 318 | 2.82e-26 | 109 |
MS.gene035858.t1 | AT2G32250 | 27.070 | 314 | 164 | 7 | 5 | 316 | 68 | 318 | 2.82e-26 | 109 |
MS.gene035858.t1 | AT2G32250 | 27.063 | 303 | 159 | 6 | 5 | 305 | 68 | 310 | 3.02e-26 | 109 |
MS.gene035858.t1 | AT2G32250 | 27.070 | 314 | 164 | 7 | 5 | 316 | 27 | 277 | 3.33e-26 | 109 |
MS.gene035858.t1 | AT2G32250 | 27.243 | 301 | 157 | 6 | 5 | 303 | 27 | 267 | 3.58e-26 | 109 |
MS.gene035858.t1 | AT1G80010 | 26.269 | 335 | 202 | 11 | 4 | 324 | 129 | 432 | 1.43e-24 | 104 |
MS.gene035858.t1 | AT3G22170 | 23.948 | 309 | 194 | 6 | 5 | 305 | 100 | 375 | 1.27e-23 | 102 |
MS.gene035858.t1 | AT3G22170 | 23.948 | 309 | 194 | 6 | 5 | 305 | 100 | 375 | 1.27e-23 | 102 |
MS.gene035858.t1 | AT4G38170 | 37.903 | 124 | 72 | 2 | 171 | 293 | 24 | 143 | 2.30e-23 | 100 |
MS.gene035858.t1 | AT1G52520 | 24.658 | 292 | 192 | 6 | 2 | 293 | 112 | 375 | 2.73e-19 | 89.0 |
MS.gene035858.t1 | AT4G19990 | 29.697 | 165 | 114 | 2 | 155 | 317 | 163 | 327 | 1.41e-17 | 84.0 |
MS.gene035858.t1 | AT4G19990 | 29.697 | 165 | 114 | 2 | 155 | 317 | 163 | 327 | 1.41e-17 | 84.0 |
MS.gene035858.t1 | AT4G19990 | 29.697 | 165 | 114 | 2 | 155 | 317 | 163 | 327 | 1.45e-17 | 84.0 |
MS.gene035858.t1 | AT4G19990 | 29.697 | 165 | 114 | 2 | 155 | 317 | 106 | 270 | 1.45e-17 | 84.0 |
MS.gene035858.t1 | AT4G19990 | 29.697 | 165 | 114 | 2 | 155 | 317 | 163 | 327 | 1.47e-17 | 84.0 |
MS.gene035858.t1 | AT4G19990 | 29.697 | 165 | 114 | 2 | 155 | 317 | 163 | 327 | 1.47e-17 | 84.0 |
MS.gene035858.t1 | AT4G19990 | 29.697 | 165 | 114 | 2 | 155 | 317 | 177 | 341 | 1.69e-17 | 84.0 |
Find 44 sgRNAs with CRISPR-Local
Find 78 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TACATTTCAGCTGCCTTTCT+TGG | 0.197151 | 5.2:+54192275 | MS.gene035858:intron |
CAACAAGATTATGCTCTATT+TGG | 0.198611 | 5.2:+54191762 | MS.gene035858:CDS |
CATCGTAAGAGTGTGTTATT+TGG | 0.276792 | 5.2:+54192308 | MS.gene035858:CDS |
TATGGTTTGAGGTTTCTTAT+TGG | 0.280533 | 5.2:-54192402 | None:intergenic |
ACCAGCTTGGTCTGTGTATA+TGG | 0.305801 | 5.2:-54192420 | None:intergenic |
GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 5.2:-54191812 | None:intergenic |
AACAATAAATATCGGCCATT+AGG | 0.388497 | 5.2:+54191819 | MS.gene035858:CDS |
ACCGAACAAACAATAAATAT+CGG | 0.389395 | 5.2:+54191811 | MS.gene035858:CDS |
CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 5.2:+54191459 | MS.gene035858:CDS |
AGCTGGAATATATTTGAAGT+TGG | 0.433136 | 5.2:+54191341 | MS.gene035858:CDS |
TGAATGTCTATAAGATATAT+AGG | 0.445219 | 5.2:+54191373 | MS.gene035858:CDS |
TGGTCTGTGTATATGGTTTG+AGG | 0.446650 | 5.2:-54192413 | None:intergenic |
GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 5.2:+54191324 | MS.gene035858:CDS |
CGTTATGCTTGTAACAAAGA+AGG | 0.449439 | 5.2:+54191207 | MS.gene035858:CDS |
GCTTTAATAAATTCTAAAGC+TGG | 0.450264 | 5.2:+54191489 | MS.gene035858:CDS |
TGGTCTTTGCTCATGGCACA+TGG | 0.452802 | 5.2:+54192487 | MS.gene035858:CDS |
CTCAAGTAGCGCAAATGCTC+TGG | 0.460440 | 5.2:-54191429 | None:intergenic |
ACAAAATAAGAAATCGGATA+AGG | 0.469178 | 5.2:+54191173 | MS.gene035858:CDS |
GAAGTGATGGGTCAAGGAGT+TGG | 0.484292 | 5.2:+54191534 | MS.gene035858:CDS |
TTACAACCAACCCTTTCCTC+TGG | 0.485330 | 5.2:-54191318 | None:intergenic |
TCTAATGACAACTCGTCAAA+AGG | 0.488137 | 5.2:+54191602 | MS.gene035858:CDS |
CAATTCACAAAATAAGAAAT+CGG | 0.490263 | 5.2:+54191167 | MS.gene035858:CDS |
ATGATTGTCAAAACCAAGAA+AGG | 0.491378 | 5.2:-54192288 | None:intergenic |
CGTCAAAAGGAGATGGTGGC+TGG | 0.492100 | 5.2:+54191615 | MS.gene035858:CDS |
GAGAACATCTTATGAAGTGA+TGG | 0.499875 | 5.2:+54191521 | MS.gene035858:CDS |
TTTAAGTCCGAAAATCGAAA+AGG | 0.508080 | 5.2:-54191573 | None:intergenic |
TGTCTTCTACAGCATCAACT+TGG | 0.523056 | 5.2:-54191707 | None:intergenic |
TGTCTATAAGATATATAGGT+GGG | 0.523740 | 5.2:+54191377 | MS.gene035858:CDS |
TAACAAAGAAGGTTTCAAGA+AGG | 0.538422 | 5.2:+54191218 | MS.gene035858:CDS |
AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 5.2:+54191219 | MS.gene035858:CDS |
AAATGCTCTGGTTTATGTAA+TGG | 0.552634 | 5.2:-54191417 | None:intergenic |
ACTTCAACAACGCACCAGCT+TGG | 0.558588 | 5.2:-54192433 | None:intergenic |
AATGAAGCTCTCTCGAAACC+AGG | 0.565261 | 5.2:+54191669 | MS.gene035858:CDS |
GTGATGGGTCAAGGAGTTGG+AGG | 0.568802 | 5.2:+54191537 | MS.gene035858:CDS |
AGAGAATGCAAAGAAAATCT+CGG | 0.585106 | 5.2:+54192511 | MS.gene035858:CDS |
TCTTATGAAGTGATGGGTCA+AGG | 0.589029 | 5.2:+54191528 | MS.gene035858:CDS |
ACCATATACACAGACCAAGC+TGG | 0.590176 | 5.2:+54192419 | MS.gene035858:CDS |
GACAACTCGTCAAAAGGAGA+TGG | 0.599038 | 5.2:+54191608 | MS.gene035858:CDS |
AGAACATCTTATGAAGTGAT+GGG | 0.601988 | 5.2:+54191522 | MS.gene035858:CDS |
AACTCGTCAAAAGGAGATGG+TGG | 0.603142 | 5.2:+54191611 | MS.gene035858:CDS |
GGGTCAAGGAGTTGGAGGCA+CGG | 0.621882 | 5.2:+54191542 | MS.gene035858:CDS |
AGAACTAGACTGTCACATGT+TGG | 0.634703 | 5.2:-54191267 | None:intergenic |
GGTCTTTGCTCATGGCACAT+GGG | 0.639768 | 5.2:+54192488 | MS.gene035858:CDS |
ATGTCTATAAGATATATAGG+TGG | 0.643489 | 5.2:+54191376 | MS.gene035858:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTAATGTTTATATTGATTGA+AGG | + | chr5.2:54191966-54191985 | MS.gene035858:intron | 15.0% |
!! | CAATTCACAAAATAAGAAAT+CGG | + | chr5.2:54191167-54191186 | MS.gene035858:CDS | 20.0% |
!! | TGAATGTCTATAAGATATAT+AGG | + | chr5.2:54191373-54191392 | MS.gene035858:CDS | 20.0% |
!!! | AATTTAATGTTCTGGTTTAT+GGG | + | chr5.2:54191994-54192013 | MS.gene035858:intron | 20.0% |
! | AAAACACCTTGAAAAACATT+CGG | - | chr5.2:54192464-54192483 | None:intergenic | 25.0% |
! | ACAAAATAAGAAATCGGATA+AGG | + | chr5.2:54191173-54191192 | MS.gene035858:CDS | 25.0% |
! | ACCGAACAAACAATAAATAT+CGG | + | chr5.2:54191811-54191830 | MS.gene035858:CDS | 25.0% |
! | AGTACAAAATACTAACCTAA+TGG | - | chr5.2:54191837-54191856 | None:intergenic | 25.0% |
! | ATGTCTATAAGATATATAGG+TGG | + | chr5.2:54191376-54191395 | MS.gene035858:CDS | 25.0% |
! | ATTCTATTTACACAACACAA+TGG | + | chr5.2:54192205-54192224 | MS.gene035858:intron | 25.0% |
! | TGAAATTTGAATGAATGTTC+TGG | + | chr5.2:54191884-54191903 | MS.gene035858:intron | 25.0% |
! | TGTCTATAAGATATATAGGT+GGG | + | chr5.2:54191377-54191396 | MS.gene035858:CDS | 25.0% |
!! | AGGTTTAGAATTTAATGTTC+TGG | + | chr5.2:54191986-54192005 | MS.gene035858:intron | 25.0% |
!! | TGTTGTATTTTGTTCTGATT+TGG | + | chr5.2:54192246-54192265 | MS.gene035858:intron | 25.0% |
!!! | AAGACATAGCTAGTATTTTT+TGG | + | chr5.2:54191724-54191743 | MS.gene035858:CDS | 25.0% |
!!! | AGACATAGCTAGTATTTTTT+GGG | + | chr5.2:54191725-54191744 | MS.gene035858:CDS | 25.0% |
!!! | CTTATTTTGTGAATTGTTCT+TGG | - | chr5.2:54191163-54191182 | None:intergenic | 25.0% |
!!! | GAATTTAATGTTCTGGTTTA+TGG | + | chr5.2:54191993-54192012 | MS.gene035858:intron | 25.0% |
!!! | GCTTTAATAAATTCTAAAGC+TGG | + | chr5.2:54191489-54191508 | MS.gene035858:CDS | 25.0% |
AAACACATATGATCTTTCCA+TGG | - | chr5.2:54192057-54192076 | None:intergenic | 30.0% | |
AACAAAGAAGGTTTCAAGAA+GGG | + | chr5.2:54191219-54191238 | MS.gene035858:CDS | 30.0% | |
AACAATAAATATCGGCCATT+AGG | + | chr5.2:54191819-54191838 | MS.gene035858:CDS | 30.0% | |
AGAACATCTTATGAAGTGAT+GGG | + | chr5.2:54191522-54191541 | MS.gene035858:CDS | 30.0% | |
AGAGAATGCAAAGAAAATCT+CGG | + | chr5.2:54192511-54192530 | MS.gene035858:CDS | 30.0% | |
ATGATTGTCAAAACCAAGAA+AGG | - | chr5.2:54192291-54192310 | None:intergenic | 30.0% | |
CAACAAGATTATGCTCTATT+TGG | + | chr5.2:54191762-54191781 | MS.gene035858:CDS | 30.0% | |
CTGGTATATGTGTGTTAATT+TGG | + | chr5.2:54191923-54191942 | MS.gene035858:intron | 30.0% | |
GCCGATATTTATTGTTTGTT+CGG | - | chr5.2:54191815-54191834 | None:intergenic | 30.0% | |
TAAAGAAAAACCAGAGGAAA+GGG | + | chr5.2:54191308-54191327 | MS.gene035858:CDS | 30.0% | |
TAACAAAGAAGGTTTCAAGA+AGG | + | chr5.2:54191218-54191237 | MS.gene035858:CDS | 30.0% | |
TGGATATCATAGTAAAAACC+TGG | - | chr5.2:54191690-54191709 | None:intergenic | 30.0% | |
TTTAAGTCCGAAAATCGAAA+AGG | - | chr5.2:54191576-54191595 | None:intergenic | 30.0% | |
! | AAATGCTCTGGTTTATGTAA+TGG | - | chr5.2:54191420-54191439 | None:intergenic | 30.0% |
! | AGCTGGAATATATTTGAAGT+TGG | + | chr5.2:54191341-54191360 | MS.gene035858:CDS | 30.0% |
! | GAATCTTCCTTTTCGATTTT+CGG | + | chr5.2:54191566-54191585 | MS.gene035858:CDS | 30.0% |
! | TATGGTTTGAGGTTTCTTAT+TGG | - | chr5.2:54192405-54192424 | None:intergenic | 30.0% |
! | TCAATTCCGAATGTTTTTCA+AGG | + | chr5.2:54192455-54192474 | MS.gene035858:CDS | 30.0% |
!! | ATGTTCTGGTTTAGAATTGA+AGG | + | chr5.2:54191898-54191917 | MS.gene035858:intron | 30.0% |
!!! | GTTTTTCAAGGTGTTTTTCA+TGG | + | chr5.2:54192467-54192486 | MS.gene035858:CDS | 30.0% |
CGAGAAGTAAATGAAGTTCA+AGG | + | chr5.2:54191459-54191478 | MS.gene035858:CDS | 35.0% | |
CGTTATGCTTGTAACAAAGA+AGG | + | chr5.2:54191207-54191226 | MS.gene035858:CDS | 35.0% | |
CTAAAGAAAAACCAGAGGAA+AGG | + | chr5.2:54191307-54191326 | MS.gene035858:CDS | 35.0% | |
GAAAGCTAAAGAAAAACCAG+AGG | + | chr5.2:54191302-54191321 | MS.gene035858:CDS | 35.0% | |
GAGAACATCTTATGAAGTGA+TGG | + | chr5.2:54191521-54191540 | MS.gene035858:CDS | 35.0% | |
GTCTGCTTAATCCTAAAAAC+AGG | + | chr5.2:54191244-54191263 | MS.gene035858:CDS | 35.0% | |
TCTAATGACAACTCGTCAAA+AGG | + | chr5.2:54191602-54191621 | MS.gene035858:CDS | 35.0% | |
TGTACAGAGCACAAATTCTA+AGG | - | chr5.2:54192033-54192052 | None:intergenic | 35.0% | |
! | CATCGTAAGAGTGTGTTATT+TGG | + | chr5.2:54192308-54192327 | MS.gene035858:CDS | 35.0% |
! | TGGTTTAGAATTGAAGGTTC+TGG | + | chr5.2:54191904-54191923 | MS.gene035858:intron | 35.0% |
! | TTTTTCATGGTCTTTGCTCA+TGG | + | chr5.2:54192480-54192499 | MS.gene035858:CDS | 35.0% |
!! | CACAAATTCTAAGGCAAGAT+AGG | - | chr5.2:54192024-54192043 | None:intergenic | 35.0% |
!!! | AGACATCAGCTACTTTTGAT+TGG | + | chr5.2:54192351-54192370 | MS.gene035858:CDS | 35.0% |
AGAACTAGACTGTCACATGT+TGG | - | chr5.2:54191270-54191289 | None:intergenic | 40.0% | |
TACATTTCAGCTGCCTTTCT+TGG | + | chr5.2:54192275-54192294 | MS.gene035858:intron | 40.0% | |
TGGTCTGTGTATATGGTTTG+AGG | - | chr5.2:54192416-54192435 | None:intergenic | 40.0% | |
TGTCTTCTACAGCATCAACT+TGG | - | chr5.2:54191710-54191729 | None:intergenic | 40.0% | |
!! | TCACATGTTGGCCTGTTTTT+AGG | - | chr5.2:54191258-54191277 | None:intergenic | 40.0% |
!! | TCTTATGAAGTGATGGGTCA+AGG | + | chr5.2:54191528-54191547 | MS.gene035858:CDS | 40.0% |
!!! | GCTAGTATTTTTTGGGCAGA+TGG | + | chr5.2:54191732-54191751 | MS.gene035858:CDS | 40.0% |
AACTCGTCAAAAGGAGATGG+TGG | + | chr5.2:54191611-54191630 | MS.gene035858:CDS | 45.0% | |
AATGAAGCTCTCTCGAAACC+AGG | + | chr5.2:54191669-54191688 | MS.gene035858:CDS | 45.0% | |
ACCAGCTTGGTCTGTGTATA+TGG | - | chr5.2:54192423-54192442 | None:intergenic | 45.0% | |
ACCATATACACAGACCAAGC+TGG | + | chr5.2:54192419-54192438 | MS.gene035858:CDS | 45.0% | |
ACCTATGCTCTTTGCATAGC+TGG | - | chr5.2:54192155-54192174 | None:intergenic | 45.0% | |
ATTTGTGCTCTGTACAGCCA+TGG | + | chr5.2:54192037-54192056 | MS.gene035858:intron | 45.0% | |
GAAAAACCAGAGGAAAGGGT+TGG | + | chr5.2:54191312-54191331 | MS.gene035858:CDS | 45.0% | |
GACAACTCGTCAAAAGGAGA+TGG | + | chr5.2:54191608-54191627 | MS.gene035858:CDS | 45.0% | |
TTACAACCAACCCTTTCCTC+TGG | - | chr5.2:54191321-54191340 | None:intergenic | 45.0% | |
! | TCCAGCTATGCAAAGAGCAT+AGG | + | chr5.2:54192151-54192170 | MS.gene035858:intron | 45.0% |
!! | GAAAGGGTTGGTTGTAAAGC+TGG | + | chr5.2:54191324-54191343 | MS.gene035858:CDS | 45.0% |
ACTTCAACAACGCACCAGCT+TGG | - | chr5.2:54192436-54192455 | None:intergenic | 50.0% | |
CTCAAGTAGCGCAAATGCTC+TGG | - | chr5.2:54191432-54191451 | None:intergenic | 50.0% | |
GGTCTTTGCTCATGGCACAT+GGG | + | chr5.2:54192488-54192507 | MS.gene035858:CDS | 50.0% | |
TGGTCTTTGCTCATGGCACA+TGG | + | chr5.2:54192487-54192506 | MS.gene035858:CDS | 50.0% | |
!! | GAAGTGATGGGTCAAGGAGT+TGG | + | chr5.2:54191534-54191553 | MS.gene035858:CDS | 50.0% |
! | CGTCAAAAGGAGATGGTGGC+TGG | + | chr5.2:54191615-54191634 | MS.gene035858:CDS | 55.0% |
!! | GTGATGGGTCAAGGAGTTGG+AGG | + | chr5.2:54191537-54191556 | MS.gene035858:CDS | 55.0% |
GGGTCAAGGAGTTGGAGGCA+CGG | + | chr5.2:54191542-54191561 | MS.gene035858:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 54191150 | 54192568 | 54191150 | ID=MS.gene035858 |
chr5.2 | mRNA | 54191150 | 54192568 | 54191150 | ID=MS.gene035858.t1;Parent=MS.gene035858 |
chr5.2 | exon | 54191150 | 54191840 | 54191150 | ID=MS.gene035858.t1.exon1;Parent=MS.gene035858.t1 |
chr5.2 | CDS | 54191150 | 54191840 | 54191150 | ID=cds.MS.gene035858.t1;Parent=MS.gene035858.t1 |
chr5.2 | exon | 54192285 | 54192568 | 54192285 | ID=MS.gene035858.t1.exon2;Parent=MS.gene035858.t1 |
chr5.2 | CDS | 54192285 | 54192568 | 54192285 | ID=cds.MS.gene035858.t1;Parent=MS.gene035858.t1 |
Gene Sequence |
Protein sequence |